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characteristic: ENA-FIRST-PUBLIC

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text: Lakeus full scale reed wetland, W2.1 outflow sediment sample, summer 2020, RNA

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characteristic: geographic location (longitude)

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text: wetland metagenome

text: wetland metagenome


status: PUBLIC

tag: attribute

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characteristic: geographic location (latitude)

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characteristic: INSDC first public

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characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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text: Lakeus full scale reed wetland, W2.1 water sample, spring 2020, DNA

characteristic: environmental medium

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characteristic: geographic location (country and/or sea)

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text: UNIVERSITY OF OULU

characteristic: INSDC first public

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text: Lakeus full scale reed wetland, W2.1 water sample, spring 2020, RNA

text: Finland

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characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

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characteristic: broad-scale environmental context

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text: Lakeus full scale reed wetland, W2.3 sample, spring 2020, DNA

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characteristic: geographic location (longitude)

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text: wetland metagenome


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characteristic: INSDC first public

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characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

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characteristic: broad-scale environmental context

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text: Finland

characteristic: geographic location (latitude)

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characteristic: organism

text: wetland metagenome


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characteristic: INSDC center name

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text: Lakeus full scale reed wetland, W2.2 water sample, summer 2020, DNA

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text: Lakeus full scale reed wetland, W2.2 water sample, summer 2020, RNA

text: Finland

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text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

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characteristic: broad-scale environmental context

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text: Lakeus full scale reed wetland, W1.3 water sample, summer 2020, DNA

characteristic: description

characteristic: elevation

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characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF OULU

characteristic: INSDC center name

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text: Lakeus full scale reed wetland, W1.3 water sample, summer 2020, RNA

text: Finland

characteristic: geographic location (latitude)

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Lakeus full scale reed wetland, W2.3 water sample, summer 2020, DNA

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Lakeus full scale reed wetland, W2.3 water sample, summer 2020, RNA

characteristic: description

characteristic: elevation

text: Finland

characteristic: geographic location (longitude)

characteristic: local environmental context

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: Lakeus full scale reed wetland, W2 outflow water sample, summer 2020, DNA

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome

text: W2_outflow_SF_full_scale_water_summer_DNA


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Lakeus full scale reed wetland, W2 outflow water sample, summer 2020, RNA

text: Finland

characteristic: geographic location (latitude)

text: wetland metagenome

characteristic: organism

text: wetland metagenome

text: W2_outflow_SF_full_scale_water_summer_RNA


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Lakeus full scale reed wetland, W1 inflow water sample, summer 2020, DNA

characteristic: description

characteristic: elevation

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

text: W1_inflow_SF_full_scale_water_summer_DNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: Lakeus full scale reed wetland, W1 inflow water sample, summer 2020, RNA

text: Finland

characteristic: geographic location (longitude)

characteristic: local environmental context

text: wetland metagenome

text: wetland metagenome

text: W1_inflow_SF_full_scale_water_summer_RNA


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Pilot 2 (reed), water, frozen, DNA

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: Microbial communities in reed and peat wetlands used for treatment of municipal wastewater

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Pilot 2 (reed), water, frozen, RNA

characteristic: description

characteristic: elevation

text: Finland

characteristic: geographic location (latitude)

text: wetland metagenome

characteristic: organism

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: Pilot 3 (reed), water, unfrozen, DNA

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Pilot 3 (reed), water, unfrozen, RNA

text: Finland

characteristic: geographic location (longitude)

characteristic: local environmental context

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: unknown v0.0

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1.0

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome-assembled genome assembled from the metagenomic run ERR4336989 of study ERP122587.

characteristic: description

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

characteristic: metagenomic source

text: Blastocystis hominis

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum and ileum samples. Samples selected for this batch were randomised among trials (feed), age, and breed to overcome batch effect. The caecum samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]), and the ileum samples contributed to the chicken ileum MAG catalogue (project: PRJEB55375 [ERP140264]).

characteristic: sample derived from

text: Blastocystis hominis

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with BAT, which assigned the following NCBI taxonomic annotation: 1;131567;2759;2698737;33634;2683628;2683629;42740;2547934;12967;12968

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4336989_bin.116_CONCOCT_v1.1.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

characteristic: Submitter Id

text: R. Buonaurio

text: Italy

text: Northern Italy, Piacenza Province, Pontenure

characteristic: geographic location (region and locality)

text: Solanum lycopersicum

characteristic: host scientific name

text: IPVPG 215

characteristic: isolate

text: tomato bacterial speck symptoms on leaves

text: Pseudomonas syringae pv. tomato

characteristic: organism

text: Pseudomonas syringae pv. tomato

text: DAPP-PG 215

characteristic: strain

text: Pseudomonas syringae pv. tomato DAPP-PG 215

characteristic: title


text: public

tag: Namespace:Columbia University Irving Medical Center

text: Compound 49 resistant clone B2

characteristic: description

text: asexual blood stage

text: Plasmodium falciparum Dd2

text: David Fidock

characteristic: provider

text: Plasmodium falciparum Dd2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Columbia University Irving Medical Center

text: public

text: Compound 49 resistant clone C5

text: asexual blood stage

text: Plasmodium falciparum Dd2

text: David Fidock

text: Plasmodium falciparum Dd2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Compound 49 resistant clone C7

text: asexual blood stage

text: Plasmodium falciparum Dd2

text: David Fidock

text: Plasmodium falciparum Dd2


text: San Diego State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:San Diego State University

text: freshwater river biome (ENVO:01000253)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Metagenomic water sample taken from Stewart's Drain site on 02-12-20

text: surface water (ENVO:00002042)

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: large river biome (ENVO:00000887)

characteristic: local environmental context

text: metagenome

text: Tijuana River and Estuary Surface Water Metagenomes

characteristic: project name

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text: San Diego State University

characteristic: INSDC last update

text: public

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characteristic: SRA accession

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text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from Yogurt Canyon site on 02-12-20

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text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

text: metagenome

characteristic: organism

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characteristic: ENA-CHECKLIST

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text: San Diego State University

characteristic: INSDC center name

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text: public

text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from TJ River Concrete Channel site on 02-12-20

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

text: metagenome

text: metagenome


text: San Diego State University

text: public

text: freshwater river biome (ENVO:01000253)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Metagenomic water sample taken from Smuggler's Gulch site on 02-12-20

text: surface water (ENVO:00002042)

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: large river biome (ENVO:00000887)

text: metagenome

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text: San Diego State University

characteristic: INSDC last update

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text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from Boca Rio site on 02-12-20

text: surface water (ENVO:00002042)

text: USA

characteristic: geographic location (longitude)

text: large river biome (ENVO:00000887)

characteristic: local environmental context

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text: San Diego State University

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text: Metagenomic water sample taken from Smuggler's Gulch site on 11-22-19

characteristic: description

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

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text: public

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characteristic: broad-scale environmental context

characteristic: collection date

text: Metagenomic water sample taken from TJ River Concrete Channel site on 11-22-19

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

text: metagenome

text: metagenome


text: San Diego State University

characteristic: INSDC last update

text: public

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text: freshwater river biome (ENVO:01000253)

characteristic: depth

text: Metagenomic water sample taken from Stewart's Drain site on 11-22-19

text: surface water (ENVO:00002042)

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: large river biome (ENVO:00000887)

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: San Diego State University

text: public

characteristic: SRA accession

text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from Goat Canyon site on 11-22-19

text: surface water (ENVO:00002042)

text: USA

characteristic: geographic location (longitude)

text: large river biome (ENVO:00000887)

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: San Diego State University

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text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from Boca Rio site on 11-22-19

characteristic: description

text: surface water (ENVO:00002042)

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characteristic: organism

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text: San Diego State University

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text: public

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characteristic: broad-scale environmental context

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text: Metagenomic water sample taken from Yogurt Canyon site on 11-22-19

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: San Diego State University

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text: Metagenomic water sample taken from Smuggler's Gulch site on 12-06-19

text: surface water (ENVO:00002042)

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: large river biome (ENVO:00000887)

text: metagenome

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: San Diego State University

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text: surface water (ENVO:00002042)

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characteristic: geographic location (longitude)

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characteristic: INSDC center name

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text: public

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text: Metagenomic water sample taken from Stewart's Drain site on 12-06-19

characteristic: description

text: surface water (ENVO:00002042)

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text: San Diego State University

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characteristic: broad-scale environmental context

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text: Metagenomic water sample taken from Goat Canyon site on 12-06-19

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

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text: metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: San Diego State University

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text: Metagenomic water sample taken from Boca Rio site on 12-06-19

text: surface water (ENVO:00002042)

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: large river biome (ENVO:00000887)

text: metagenome

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text: San Diego State University

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text: Metagenomic water sample taken from Yogurt Canyon site on 12-06-19

text: surface water (ENVO:00002042)

text: USA

characteristic: geographic location (longitude)

text: large river biome (ENVO:00000887)

characteristic: local environmental context

text: metagenome

characteristic: project name

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characteristic: ENA-FIRST-PUBLIC

text: San Diego State University

text: public

characteristic: Submitter Id

text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from Smuggler's Gulch site on 02-24-20

characteristic: description

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

text: metagenome

characteristic: organism

text: Tijuana River and Estuary Surface Water Metagenomes

text: metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: San Diego State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome (ENVO:01000253)

characteristic: broad-scale environmental context

characteristic: collection date

text: Metagenomic water sample taken from TJ River Concrete Channel site on 02-24-20

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

text: metagenome

text: metagenome


text: San Diego State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: freshwater river biome (ENVO:01000253)

characteristic: depth

text: Metagenomic water sample taken from Stewart's Drain site on 02-24-20

text: surface water (ENVO:00002042)

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: large river biome (ENVO:00000887)

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: San Diego State University

text: public

characteristic: SRA accession

text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from Boca Rio site on 02-24-20

text: surface water (ENVO:00002042)

text: USA

characteristic: geographic location (longitude)

text: large river biome (ENVO:00000887)

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: San Diego State University

text: public

characteristic: Submitter Id

text: freshwater river biome (ENVO:01000253)

text: Metagenomic water sample taken from Yogurt Canyon site on 02-24-20

characteristic: description

text: surface water (ENVO:00002042)

text: USA

text: large river biome (ENVO:00000887)

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UPPSALA UNIVERSITY

text: human

characteristic: common name

text: Stone-Age

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: INRA

text: public

text: Hospital WW laboratory biofilm #2

text: biofilm metagenome

text: biofilm metagenome


characteristic: ENA-FIRST-PUBLIC

text: INRA

text: public

text: Hospital WW laboratory biofilm #1

text: biofilm metagenome

text: biofilm metagenome


text: INRA

text: public

characteristic: SRA accession

text: Hospital Waste Water

text: biofilm metagenome

text: biofilm metagenome


text: INRA

text: public

text: Hospital WW in situ biofilm

text: biofilm metagenome

text: biofilm metagenome


text: INRA

text: public

text: Urban WW laboratory biofilm #2

text: biofilm metagenome

text: biofilm metagenome


text: INRA

text: public

text: Urban WW laboratory biofilm #1

text: biofilm metagenome

text: biofilm metagenome


text: INRA

text: public

text: Urban Waste Water

text: biofilm metagenome

text: biofilm metagenome


text: INRA

text: public

text: Urban WW in situ biofilm

text: biofilm metagenome

text: biofilm metagenome


text: public

tag: Namespace:ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: Labrador Retriever

characteristic: breed

text: dog

text: Subject recruited from DogsLife Project

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Female

characteristic: sex

text: saliva


text: ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: public

text: Labrador Retriever

text: dog

text: Subject recruited from DogsLife Project

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Male

text: saliva


text: public

text: Labrador Retriever

text: dog

text: Subject recruited from DogsLife Project

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Female

text: saliva


text: UNIVERSITY OF COPENHAGEN

text: public

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.01 from tank SA01 with treatment Tiger

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Fermented algae meal (added in in oil coating)

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

unit: % mass

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

unit: g

characteristic: host gutted mass

unit: cm

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

unit: °C

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit

characteristic: library name

text: rRNA depletion + strand specific library

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

unit: day

characteristic: trial timepoint

type: EXTERNAL LINKS

type: SAMPLE

value: Sample code

value: Experiment

value: transcriptomics

value: Project

value: HoloFood

value: Organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.02 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title

value: Body site

value: distal gut tissue

value: Fermented algae meal (added in in oil coating)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.03 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.04 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title

value: Salmon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.05 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:+

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.11 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.12 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.13 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.16 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.19 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.20 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.21 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.23 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.24 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.26 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Fermented algae meal (added in in oil coating)

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

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text: HoloFood Salmon - Host Transcriptome

characteristic: project name

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text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

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text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

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characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.27 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit

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text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

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text: RNAlater

text: UCPH

text: Salmo salar

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characteristic: title


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.29 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

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characteristic: host subject id

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characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

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characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA01.30 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

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characteristic: host disease status

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text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

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text: Salmo salar

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characteristic: title


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.01 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

characteristic: host taxid

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characteristic: library name

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text: D-rex protocol

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text: Salmo salar

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text: RNAlater

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characteristic: sample storage location

characteristic: sample storage temperature

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text: Salmo salar

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characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.02 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

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characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.03 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

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characteristic: library name

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text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

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text: RNAlater

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characteristic: sample storage container

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characteristic: sample storage temperature

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text: Salmo salar

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characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF COPENHAGEN

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text: public

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characteristic: SRA accession

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.04 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.05 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

characteristic: host taxid

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characteristic: library name

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text: D-rex protocol

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characteristic: sample storage temperature

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text: Salmo salar

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characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.11 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

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characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.14 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

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text: LetSea Tank: Jaguar

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characteristic: library name

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text: D-rex protocol

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text: Salmo salar

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.15 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

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characteristic: organism

text: HoloFood

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characteristic: title


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characteristic: INSDC center name

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characteristic: SRA accession

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.16 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

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text: LetSea Tank: Jaguar

characteristic: host subject id

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text: Salmo salar

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text: RNAlater

characteristic: sample storage buffer

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characteristic: sample storage location

characteristic: sample storage temperature

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text: Salmo salar

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characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF COPENHAGEN

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text: public

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.17 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

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characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

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characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

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text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

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characteristic: organism

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text: RNAlater

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text: Salmo salar

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.18 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Fermented algae meal (added in in oil coating)

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

characteristic: host taxid

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.20 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

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characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

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characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.21 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

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text: Jaguar SA Seaweed 2%

text: Wounded:-

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text: LetSea Tank: Jaguar

characteristic: host subject id

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characteristic: sample storage temperature

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characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.22 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

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characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.23 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.25 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.26 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.27 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.28 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.29 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut tissue

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Transcriptome

text: RNAlater

text: UCPH

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host transcriptome data from Distal gut tissue; animal SA02.30 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut tissue

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: RNAlater

characteristic: sample storage buffer

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina Novaseq 6000

characteristic: sequencing method

characteristic: trial timepoint