characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CA21.02 from cage CA21 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: Sample code


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

text: Prior chicken data from Caecum content; animal CA23.01 from cage CA23 with treatment CC

text: Spain

unit: DD

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Control

text: Campylobacter:NS;Salmonella:NS;Clostridium:NS

text: Gallus gallus

text: male

unit: °C

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

unit: g

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

unit: day

characteristic: trial length

characteristic: trial timepoint

type: EXTERNAL LINKS

type: BIOGENIC AMINES

type: SAMPLE

value: Raw sequence name

value: UCPH

value: ng used for library build

value: Body site

value: caecum content

value: Pool

value: Experiment

value: metagenomics

value: Lab Process ID

value: Organism

value: Chicken

value: Sequencing company

value: BGI

value: Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CA23.02 from cage CA23 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

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text: Gallus gallus

characteristic: host scientific name

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characteristic: host sex

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characteristic: organism

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text: Shield

text: E-matrix 2ml

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characteristic: title

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CA24.09 from cage CA24 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

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characteristic: sequencing method

characteristic: trial length

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CA24.16 from cage CA24 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

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characteristic: host breed

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characteristic: host common name

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characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

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characteristic: organism

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characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CB02.14 from cage CB02 with treatment CE

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text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

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characteristic: host storage container temperature

characteristic: host subject id

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text: D-rex protocol

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text: E-matrix 2ml

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characteristic: sample storage location

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characteristic: trial length

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characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CB03.02 from cage CB03 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

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text: Gallus gallus

characteristic: host scientific name

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text: public

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characteristic: SRA accession

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text: Prior chicken data from Caecum content; animal CB03.13 from cage CB03 with treatment CC

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text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

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text: chicken gut metagenome

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characteristic: sample storage temperature

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text: chicken gut metagenome

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characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CB04.03 from cage CB04 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

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text: D-rex protocol

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characteristic: title


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characteristic: SRA accession

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text: Prior chicken data from Caecum content; animal CB05.03 from cage CB05 with treatment CO

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text: Prior chicken data from Caecum content; animal CB05.09 from cage CB05 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

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characteristic: host breed

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characteristic: host common name

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characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

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text: Prior chicken data from Caecum content; animal CB05.15 from cage CB05 with treatment CO

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text: Chicken

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characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

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text: Prior chicken data from Caecum content; animal CB06.02 from cage CB06 with treatment CC

characteristic: description

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

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characteristic: host common name

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characteristic: host diet treatment

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characteristic: host scientific name

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text: Prior chicken data from Caecum content; animal CB07.14 from cage CB07 with treatment CE

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text: Caecum content

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characteristic: host storage container temperature

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characteristic: ENA-CHECKLIST

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characteristic: Submitter Id

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CB09.12 from cage CB09 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

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characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

text: Prior chicken data from Caecum content; animal CB10.17 from cage CB10 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

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text: HoloFood Chicken - Prior Chicken

characteristic: project name

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text: Shield

characteristic: sample storage buffer

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characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

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characteristic: ENA-CHECKLIST

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characteristic: Submitter Id

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CB11.08 from cage CB11 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

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characteristic: organism

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characteristic: title

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text: Prior chicken data from Caecum content; animal CB12.09 from cage CB12 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

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text: D-rex protocol

characteristic: nucleic acid extraction

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text: Prior chicken data from Caecum content; animal CB13.04 from cage CB13 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

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characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CB14.10 from cage CB14 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Prebiotic

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

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characteristic: project

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characteristic: project name

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text: Shield

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text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CB15.07 from cage CB15 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CB17.08 from cage CB17 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CB18.09 from cage CB18 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: HoloFood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CB18.14 from cage CB18 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

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text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

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characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CB20.13 from cage CB20 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: Raw sequence name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CB21.03 from cage CB21 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

text: Campylobacter:NS;Salmonella:NS;Clostridium:NS

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: UCPH


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF COPENHAGEN

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CB22.08 from cage CB22 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: ng used for library build


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CB23.10 from cage CB23 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

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text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

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value: Body site


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CB23.14 from cage CB23 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

text: Prior chicken data from Caecum content; animal CB24.15 from cage CB24 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC01.06 from cage CC01 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

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characteristic: title

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characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC01.09 from cage CC01 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Campylobacter:+;Salmonella:-;Clostridium:-

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

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text: HoloFood Chicken - Prior Chicken

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text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Pool


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF COPENHAGEN

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC01.17 from cage CC01 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC02.17 from cage CC02 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

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text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

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characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC04.06 from cage CC04 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

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characteristic: SRA accession

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text: Prior chicken data from Caecum content; animal CC04.08 from cage CC04 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

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text: D-rex protocol

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CC05.07 from cage CC05 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

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characteristic: host breed

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characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

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characteristic: host scientific name

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characteristic: host sex

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characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC06.05 from cage CC06 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

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characteristic: nucleic acid extraction

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characteristic: SRA accession

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CC06.09 from cage CC06 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

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characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

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characteristic: host scientific name

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characteristic: organism

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characteristic: title

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characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC06.17 from cage CC06 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

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text: HoloFood

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characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

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characteristic: sequencing method

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text: public

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text: Prior chicken data from Caecum content; animal CC07.04 from cage CC07 with treatment CE

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

text: Prior chicken data from Caecum content; animal CC08.01 from cage CC08 with treatment CC

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text: Prior chicken data from Caecum content; animal CC11.11 from cage CC11 with treatment CC

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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characteristic: host scientific name

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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characteristic: adapters

characteristic: collection date

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC14.05 from cage CC14 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Campylobacter:-;Salmonella:+;Clostridium:-

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC14.15 from cage CC14 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: HoloFood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC16.01 from cage CC16 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Campylobacter:-;Salmonella:-;Clostridium:-

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Sample code


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC16.07 from cage CC16 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: Raw sequence name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC16.10 from cage CC16 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: UCPH


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC17.03 from cage CC17 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: ng used for library build


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC17.07 from cage CC17 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Body site


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC18.06 from cage CC18 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title