characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SD12.23 from tank SD12 with treatment SK0

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Seaweed

text: SK0 SD Fermented seaweed 0.0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: SK0

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SD12.24 from tank SD12 with treatment SK0

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Seaweed

characteristic: host diet

text: SK0 SD Fermented seaweed 0.0%

characteristic: host diet treatment

unit: % mass

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

unit: g

characteristic: host gutted mass

unit: cm

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: SK0

characteristic: host storage container

characteristic: host storage container pH

unit: °C

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

text: Shield

text: 2ml E-matrix

text: UCPH

unit: mL

text: Salmo salar

text: Illumina MiSeq

unit: day

type: EXTERNAL LINKS

type: SAMPLE

value: Project

value: HoloFood

value: Organism

value: Salmon

value: Sample code

value: Experiment

value: Trial D: Fermented seaweed open water-dose response


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SD12.28 from tank SD12 with treatment SK0

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Seaweed

text: SK0 SD Fermented seaweed 0.0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: SK0

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Body site

value: distal gut content

value: amplicon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SD12.29 from tank SD12 with treatment SK0

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Seaweed

characteristic: host diet

text: SK0 SD Fermented seaweed 0.0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: SK0

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq


text: Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Engebretsen Serina Beate, Pedersen Benedikte Nevjen, Line Victoria Moen, Hilde Nordby Falkenhaug, Debech Nadia, Atiya R Ali, Marie Paulsen Madsen, Rasmus Riis Kopperud, Hilde Vollan, Karoline Bragstad, Olav Hungnes

characteristic: Authors

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Norwegian Institute of Public Health (NIPH)

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: NA ; NA

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Viken

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


characteristic: Authors

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Norwegian Institute of Public Health (NIPH)

characteristic: INSDC center name

text: public

text: ELIXIR-Norway

text: NA ; NA

text: not provided

text: Norway

text: Viken

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


text: THE JACKSON LABORATORY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Instrument

characteristic: Instrument

characteristic: SRA accession

tag: Namespace:THE JACKSON LABORATORY

characteristic: Submitter Id

text: human

characteristic: common name

text: HG03009_GT20-08888_ATGGCATG-AAGGTACC_S33_L004_R1_001.fastq.gz

text: PolyA

text: TRANSCRIPTOMIC

text: RNASeq

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

text: public

text: Instrument

text: human

text: HG00733_GT20-08868_ACTAAGAT-AACCGCGG_S12_L002_R2_001.fastq.gz

text: PolyA

text: TRANSCRIPTOMIC

text: RNASeq

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: THE JACKSON LABORATORY

text: public

text: Instrument

text: human

text: HG03009_GT20-08888_ATGGCATG-AAGGTACC_S33_L004_R2_001.fastq.gz

text: PolyA

text: TRANSCRIPTOMIC

text: RNASeq

text: Homo sapiens

text: Homo sapiens


text: Portugal

characteristic: Country

characteristic: External Id

text: public

text: Sensitive

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Portugal

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

text: public

text: Sensitive

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Portugal

text: public

text: HR-TB

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Portugal

text: public

text: Other

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Portugal

text: public

text: RR-TB

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Portugal

text: public

text: MDR-TB

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: NORMAN LEE

text: ST OLAF COLLEGE

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: NORTHFIELD | MN | ST OLAF COLLEGE

characteristic: geographic location (region and locality)

text: LAB POPULATION

characteristic: habitat

text: NORMAN LEE

text: ST OLAF COLLEGE

text: adult

characteristic: lifestage

text: Ormia ochracea

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Ormia ochracea

text: FEMALE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NORMAN LEE

text: ST OLAF COLLEGE

text: USA

text: NORTHFIELD | MN | ST OLAF COLLEGE

text: LAB POPULATION

text: NORMAN LEE

text: ST OLAF COLLEGE

text: adult

text: Ormia ochracea

characteristic: organism

text: WHOLE ORGANISM

characteristic: sample same as

text: Ormia ochracea

text: FEMALE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: ANDREW HENDRY

text: MCGILL UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: three-spined stickleback

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ALASKA | WATSON LAKE

characteristic: geographic location (region and locality)

text: LAKE

characteristic: habitat

text: ANDREW HENDRY

text: MCGILL UNIVERSITY

text: adult

characteristic: lifestage

text: Gasterosteus aculeatus

text: FIN

characteristic: sample derived from

text: Gasterosteus aculeatus

text: NOT COLLECTED

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Pohang University of Science and Technology

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Col x Ler F2

characteristic: cultivar

text: Protocols: 3 rosette leaves of 5 week old plants long day conditions (16 hr light), 20 degrees Celcius CTAB Ultra™ II DNA Library Prep Kit for Illumina®

characteristic: description

text: adult

characteristic: developmental stage

text: recq4ab Col x recq4a Ler

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana


characteristic: External Id

text: Pohang University of Science and Technology

characteristic: INSDC center name

text: public

text: ArrayExpress

text: thale cress

characteristic: common name

text: Col x Ler F2

text: adult

text: recq4ab Col x recq4a Ler

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NTU, SBS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:NTU, SBS

text: ArrayExpress

text: stiff brome

text: Protocols: Sample collection was performed by Dr. Richard Poire, ANU Four B. distachyon Bd21-3 seeds were sowed in the soil and vernalized for 5 days in the 4℃ cold room. After vernalization, the seeds were grown at 25℃, 50% relative humidity, 100 μE*m-2*s-1 light intensity, and with a day/night cycle of 24/0 hours DNA was extracted from samples using the CTAB method The preparation of the DNA library and Whole Genome Bisulfite Sequencing was conducted by Novogene.

text: wild type genotype

text: Brachypodium distachyon

text: Brachypodium distachyon

text: shoot system

text: Brachypodium distachyon


text: NTU, SBS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stiff brome

text: warm/hot temperature regimen

characteristic: environmental stress

text: wild type genotype

text: Brachypodium distachyon

text: Brachypodium distachyon

text: shoot system

text: Brachypodium distachyon


text: NTU, SBS

text: public

text: ArrayExpress

text: stiff brome

characteristic: cultivar

characteristic: description

text: warm/hot temperature regimen then recovery

text: wild type genotype

characteristic: genotype

text: Brachypodium distachyon

text: Brachypodium distachyon

text: shoot system

characteristic: organism part

text: Brachypodium distachyon


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Scottish Fish Immunology Research Centre, University of Aberdeen

text: ArrayExpress

text: macrophage

text: rainbow trout

characteristic: common name

text: Protocols: Samples were collected from their respective wells within a 24 well plate after 4 hrs of stimulation. Initially the media was taken off and spun down at 12000g for 5 mins and pelleted with the supernatant being discarded to isolate any cells that were non-adherent. 750μl of TRI reagent (Sigma) was added to each well, with each well being scraped to ensure all adherent cells were collected. The TRI reagent was then added to the subsequent tube containing pelleted non-adherent cells before being shaken to ensure samples were mixed. The subsequent TRI-lysate was then stored at -80oC until further processing. RTS11 cells were cultured in flasks (75 cm2) at 20oC in growth media (Leibovitz L-15 media + 30% FBS + 1% Penicillin/Streptomycin). Before stimulation, RTS11 cells were collected, and pelleted by centrifugation at 500g for 10 min at 4oC before being resuspended in fresh stimulation media (Leibovitz L-15 media + 1% FBS + 1% Penicillin/streptomycin). Cell concentrations were adjusted to 5x105 cells/ml before 1 ml was added to 24 well plates. Cells were stimulated using 100 µg/ml of M-glucans (Biotec) for 4 hr. Fresh M-glucan stock solutions were made from a powdered version, suspended in L-15 media, and stored at 4oC until use. Stock solutions were then added to wells containing cells diluted in media to give the working solutions. All experiments were performed in randomized design with quadruplicate wells that were treated independently through the entire protocol (n = 4). Total RNA extraction was performed from cells in individual wells using 750 µL of TRI Reagent (Sigma) following the manufacturer’s instructions. The RNA pellet was washed using 80% ethanol, dissolved in RNase-free water, and stored at -80oC until use. Quality control of the samples was determined by nanodrop spectrophotometer for quantity and Agilent bioanalyzer 2100 to determine RNA integrity where samples were ensured to be above 7.0 RIN (9.5-9.8 in all samples) before being used for library generation and sequencing. RNA-seq library preparation and sequencing were carried out by Novogene ltd in Cambridge (UK). Libraries for each of the 8 samples were enriched for Poly A+ RNA and used to generate True seq libraries. Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers followed by the second strand cDNA synthesis. The library was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. The library was checked with Qubit and real-time PCR for quantification and bioanalyzer for size distribution detection.

text: adult

characteristic: developmental stage

text: disease

characteristic: disease

text: wild type genotype

text: Oncorhynchus mykiss

characteristic: organism

text: Oncorhynchus mykiss

text: spleen

text: Oncorhynchus mykiss


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Scottish Fish Immunology Research Centre, University of Aberdeen

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: macrophage

text: rainbow trout

text: adult

text: disease

text: wild type genotype

text: Oncorhynchus mykiss

text: Oncorhynchus mykiss

text: spleen

text: Oncorhynchus mykiss

characteristic: title


characteristic: Further Details

text: CIRAD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: m

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: lake water sample (surface water filtered at 0.2 µm), collected in Somogy, Siofok, Lake Balaton (46° 56.014', 18° 7.056'; altitude: 133 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Somogy, Siofok, Lake Balaton

characteristic: geographic location (region and locality)

text: small freshwater lake biome (ENVO_00000892)

characteristic: local environmental context

text: uncultured eukaryote

text: CCAGCA[GC]C[CT]GCGGTAATTCC_ACTTTCGTTCTTGAT[CT][AG]A

characteristic: pcr primers

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment

text: lake water sample from Plattensee (Hungary)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Further Details

text: CIRAD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater lake biome (ENVO_01000252)

text: lake water sample (surface water filtered at 0.2 µm), collected in Opole Voivodeship, Turawa (50° 43.2359', 18° 06.4311'; altitude: 172 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Poland

text: Opole Voivodeship, Turawa

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Turawa (Poland)

characteristic: title


text: CIRAD

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: lake water sample (surface water filtered at 0.2 µm), collected in Thuringen, Frankenhain, Talsperre Lutsche (50° 44' 01'', 10° 45' 24''; altitude: 591 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Lütschetalsperre (Germany)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Further Details

text: CIRAD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater lake biome (ENVO_01000252)

text: lake water sample (surface water filtered at 0.2 µm), collected in Bourgogne, Les Bordes, Lac de Panthier (47° 14' 17.06'', 4° 37' 52.9''; altitude: 413 meters)

text: lake water (ENVO_04000007)

text: Yes

text: France

text: Bourgogne, Les Bordes, Lac de Panthier

text: uncultured eukaryote

characteristic: pcr primers

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment

text: lake water sample from Lac de Panthier (France)


text: CIRAD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: lake water sample (surface water filtered at 0.2 µm), collected in Granada, Collado del Veleta, Laguna de las Aquas Verdes (37° 2' 53.15'', -3° -22' -6.1''; altitude: 3110 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Laguna de las Aquas Verdes (Spain)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Further Details

text: CIRAD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater lake biome (ENVO_01000252)

text: lake water sample (surface water filtered at 0.2 µm), collected in Tarn-et-Garonne, Mantagnes, Lac du Tordre (44° 1' 22.08'', 1° 27' 33.71''; altitude: 175 meters)

text: lake water (ENVO_04000007)

text: Yes

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Lac du Tordre (France)


text: CIRAD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: lake water sample (surface water filtered at 0.2 µm), collected in Rheinland-Pfalz, Meerfeld, Meerfelder Maar (50° 6' 1.45'', 6° 45' 48.06''; altitude: 375 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Germany

text: uncultured eukaryote

characteristic: pcr primers

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment

text: lake water sample from Meerfelder Maar (Germany)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Further Details

text: CIRAD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater lake biome (ENVO_01000252)

text: lake water sample (surface water filtered at 0.2 µm), collected in Steiermark, Tote Gebirge, Augstsee (47° 39' 49.27'', 13° 47' 10.43''; altitude: 1646 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Steiermark, Tote Gebirge, Augstsee

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Augstsee (Austria)

characteristic: title


text: CIRAD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: lake water sample (surface water filtered at 0.2 µm), collected in Karnten, Annenheim, Ossiacher See (46° 39.291', 13° 54.053'; altitude: 501 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Karnten, Annenheim, Ossiacher See

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Ossiacher See (Austria)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Further Details

text: CIRAD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater lake biome (ENVO_01000252)

text: lake water sample (surface water filtered at 0.2 µm), collected in Karnten, Ebene Reichenau, Windebensee (46° 53' 20'', 13° 48' 19''; altitude: 1889 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Karnten, Ebene Reichenau, Windebensee

text: small freshwater lake biome (ENVO_00000892)

text: uncultured eukaryote

text: CCAGCA[GC]C[CT]GCGGTAATTCC_ACTTTCGTTCTTGAT[CT][AG]A

characteristic: pcr primers

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment

text: lake water sample from Windebensee (Austria)


text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12729:AB14_ara_T12_S2_all_R1_001_cutadapt.fastq.gz

tag: Namespace:Paris-Saclay University, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC); 91198, Gif-sur-Yvette, France.

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Cells were grown in the MM (minimal media supplemented with fructose, with or without arabinose (ara). Vibrio cholerae population were maintained in steady state in minimal medium (M9 + 0.2% fructose) at 30°C for 12h to 20h without (top) or with (bottom) arabinose (0,02% final concentration Sigma GenElute® bacterial genomic DNA kit 'Nextera DNA library preparation kit’ (Illumina) following the manufacturer’s recommendations.

characteristic: description

text: YAV20 inv[glmU-mioC]

characteristic: genotype

text: not applicable

characteristic: isolate

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

text: whole organism

characteristic: organism part

text: Vibrio cholerae

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Paris-Saclay University, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC); 91198, Gif-sur-Yvette, France.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12729:AB14_noara_T12_S2_all_R1_001_cutadapt.fastq.gz

text: ArrayExpress

text: YAV20 inv[glmU-mioC]

text: not applicable

text: Vibrio cholerae

text: Vibrio cholerae

text: whole organism

text: Vibrio cholerae


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12729:AB23_ara_T12_S2_all_R1_001_cutadapt.fastq.gz

text: ArrayExpress

text: YAV20 ΔrecB::CmR

text: not applicable

text: Vibrio cholerae

text: Vibrio cholerae

text: whole organism

text: Vibrio cholerae


text: public

characteristic: SRA accession

text: E-MTAB-12729:AB23_noara_T12_S2_all_R1_001_cutadapt.fastq.gz

characteristic: Submitter Id

text: ArrayExpress

text: YAV20 ΔrecB::CmR

text: not applicable

text: Vibrio cholerae

text: Vibrio cholerae

text: whole organism

text: Vibrio cholerae


text: public

text: E-MTAB-12729:Psh10_Vc10_S10_all_R1_001_cutadapt.fastq.gz

text: ArrayExpress

characteristic: broker name

characteristic: description

text: E7946 loxP[dciA] SpR lacZ::cre ZeoR

text: not applicable

text: Vibrio cholerae

text: Vibrio cholerae

text: whole organism

text: Vibrio cholerae


text: public

text: E-MTAB-12729:Psh7_Vc7_S7_all_R1_001_cutadapt.fastq.gz

text: ArrayExpress

text: E7946 loxP[dciA] SpR lacZ::cre ZeoR

characteristic: genotype

text: not applicable

characteristic: isolate

text: Vibrio cholerae

text: Vibrio cholerae

text: whole organism

text: Vibrio cholerae


text: public

text: E-MTAB-12729:Psh8_Vc8_S8_all_R1_001_cutadapt.fastq.gz

text: ArrayExpress

text: E7946 loxP[dciA] SpR lacZ::cre ZeoR

text: not applicable

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

text: whole organism

characteristic: organism part

text: Vibrio cholerae


text: public

text: E-MTAB-12729:Psh9_Vc9_S9_all_R1_001_cutadapt.fastq.gz

text: ArrayExpress

text: E7946 loxP[dciA] SpR lacZ::cre ZeoR

text: not applicable

text: Vibrio cholerae

text: Vibrio cholerae

text: whole organism

text: Vibrio cholerae

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital of RWTH Aachen

text: public

tag: Namespace:University Hospital of RWTH Aachen

text: negative control

characteristic: broad-scale environmental context

characteristic: collection date

text: domestic pig

characteristic: common name

text: negative control; water

text: water

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: negative control

characteristic: local environmental context

text: Sus scrofa domesticus

text: 16S rRNA gene amplicon sequencing of V3-V4 region on Illumina MiSeq (PE300)

characteristic: project name

text: Sus scrofa domesticus

characteristic: sequencing method

text: negative control; water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital of RWTH Aachen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: negative control

text: domestic pig

text: negative control; dnastab

characteristic: description

text: dnastab

text: Germany

text: host-associated

text: negative control

text: Sus scrofa domesticus

characteristic: organism

text: Sus scrofa domesticus

text: negative control; dnastab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:RADBOUD UNIVERSITY, Department Microbiology

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

text: Bac341F (5 - CCTACGGGNGGCWGCAG - 3); Bac806R (5 - GGACTACHVGGGTWTCTAAT-3); Arch349F (5 - GYGCASCAGKCGMGAAW - 3); Arch806R (5 - GGACTACVSGGGTATCTAAT - 3)

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Amstel river 1cm

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RADBOUD UNIVERSITY, Department Microbiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Amstel river 2cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Amstel river 3cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Amstel river 4cm

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Amstel river 5cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Amstel river 6cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Amstel river 7cm

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Amstel river 8cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Amstel river 9cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Amstel river 10cm

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Amstel river 10-12cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Amstel river 12-14cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Zoutkeetsgracht 1cm

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Zoutkeetsgracht 2cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Zoutkeetsgracht 3cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Zoutkeetsgracht 4cm

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Zoutkeetsgracht 5cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Zoutkeetsgracht 6cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Zoutkeetsgracht 7cm

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Zoutkeetsgracht 8cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Zoutkeetsgracht 9cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Zoutkeetsgracht 10cm

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Dijksgracht 1cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Dijksgracht 2cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Dijksgracht 3cm

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Dijksgracht 4cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Dijksgracht 5cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Dijksgracht 6cm

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Dijksgracht 7cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Dijksgracht 8cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Dijksgracht 9cm

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Dijksgracht 10cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Dijksgracht 10-12cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Dijksgracht 12-14cm

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Dijksgracht 14-16cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Dijksgracht 16-18cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Dijksgracht 18-20cm

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Dijksgracht 20-22cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Dijksgracht 22-24cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: urban

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: canal

text: freshwater sediment metagenome

characteristic: pcr primers

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Dijksgracht 24-26cm

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

characteristic: geographic location (longitude)

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Anaerobic methanotrophy in urban canals

characteristic: project name

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Dijksgracht 26-28cm


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

characteristic: organism

text: Anaerobic methanotrophy in urban canals

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Dijksgracht 28-30cm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UDS

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-07-03-2023-14:36:16:121-13647

text: Lachancea kluyveri, CBS10367 diploid isolate

characteristic: description

text: Lachancea kluyveri

text: Lachancea kluyveri

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

text: lake water sample (surface), collected in 2006-07-12 (47.662778, 13.7875; altitude: 1600 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Steiermark, Tote Gebirge, Augstsee

characteristic: geographic location (region and locality)

text: small freshwater lake biome (ENVO_00000892)

characteristic: local environmental context

text: uncultured eukaryote

text: CCAGCA[GC]C[CT]GCGGTAATTCC_ACTTTCGTTCTTGAT[CT][AG]A

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment

text: lake water sample from Steiermark, Tote Gebirge, Augstsee (Austria)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-07-24 (47.662778, 13.7875; altitude: 1600 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Steiermark, Tote Gebirge, Augstsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

text: lake water sample (surface), collected in 2006-08-08 (47.662778, 13.7875; altitude: 1600 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Steiermark, Tote Gebirge, Augstsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-08-22 (47.662778, 13.7875; altitude: 1600 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Steiermark, Tote Gebirge, Augstsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-09-19 (47.662778, 13.7875; altitude: 1600 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Steiermark, Tote Gebirge, Augstsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-10-04 (47.662778, 13.7875; altitude: 1600 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Steiermark, Tote Gebirge, Augstsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-10-17 (47.662778, 13.7875; altitude: 1600 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Steiermark, Tote Gebirge, Augstsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-10-31 (47.662778, 13.7875; altitude: 1600 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Steiermark, Tote Gebirge, Augstsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-04-18 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Salzburg, Fuschl am See, Fuschlsee (Austria)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-05-02 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-05-15 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-05-31 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-06-12 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-06-26 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-07-10 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: small freshwater lake biome (ENVO_00000892)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-07-21 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

text: CCAGCA[GC]C[CT]GCGGTAATTCC_ACTTTCGTTCTTGAT[CT][AG]A

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-08-07 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-08-21 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-09-04 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-09-18 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-10-02 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-10-16 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-10-30 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-11-15 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Salzburg, Fuschl am See, Fuschlsee (Austria)

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-11-27 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-12-11 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-04-18 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Salzburg, Henndorf am Wallersee, Wallersee (Austria)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-05-02 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Henndorf am Wallersee, Wallersee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-05-15 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: small freshwater lake biome (ENVO_00000892)

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-05-31 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: CCAGCA[GC]C[CT]GCGGTAATTCC_ACTTTCGTTCTTGAT[CT][AG]A

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-06-12 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-06-26 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-07-10 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-07-21 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-08-07 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2007-08-21 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-09-04 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-09-18 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-10-02 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-10-16 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-11-15 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Salzburg, Henndorf am Wallersee, Wallersee (Austria)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2006-11-27 (47.909722, 13.179444; altitude: 514 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Henndorf am Wallersee, Wallersee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2006-12-11 (47.909722, 13.179444; altitude: 514 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: small freshwater lake biome (ENVO_00000892)

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2007-04-16 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

text: CCAGCA[GC]C[CT]GCGGTAATTCC_ACTTTCGTTCTTGAT[CT][AG]A

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA

text: lake water sample from Salzburg, Fuschl am See, Fuschlsee (Austria)


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2007-05-07 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2007-05-30 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2007-06-21 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2007-07-09 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

text: Yes

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: geographic location (region and locality)

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: title


characteristic: Further Details

text: CIRAD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: collection date

characteristic: depth

text: lake water sample (surface), collected in 2007-07-31 (47.805833, 13.255556; altitude: 701 meters)

characteristic: description

text: lake water (ENVO_04000007)

text: Yes

text: Austria

text: Salzburg, Fuschl am See, Fuschlsee

characteristic: local environmental context

text: uncultured eukaryote

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIRAD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

text: lake water sample (surface), collected in 2007-08-22 (47.805833, 13.255556; altitude: 701 meters)

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: Salzburg, Fuschl am See, Fuschlsee

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: 18S SSU rRNA