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characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Venus

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit

text: D-rex protocol

text: fish gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Salmon - MetaTranscriptomics

text: Shield

text: 2ml E-matrix

text: UCPH

text: fish gut metagenome

text: Illumina NovaSeq 6000

characteristic: title

value: Pool


text: Anopheles coluzzii

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Anopheles coluzzii

characteristic: common name

text: Anopheles coluzzii

text: Anopheles coluzzii


text: Anopheles darlingi

text: SC

text: public

text: Anopheles darlingi

text: Anopheles darlingi

text: Anopheles darlingi


text: Anopheles aquasalis

text: SC

text: public

text: Anopheles aquasalis

text: Anopheles aquasalis

text: Anopheles aquasalis


text: Anopheles funestus

text: SC

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus


text: Anopheles gambiae

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Anopheles oryzalimnetes

text: SC

text: public

text: Anopheles oryzalimnetes

text: Anopheles oryzalimnetes

text: Anopheles oryzalimnetes


text: Anopheles cruzii

text: SC

text: public

text: Anopheles cruzii

text: Anopheles cruzii

text: Anopheles cruzii


text: Anopheles moucheti

text: SC

text: public

text: Anopheles moucheti

text: Anopheles moucheti moucheti

text: Anopheles moucheti moucheti


text: Anopheles marshallii

text: SC

text: public

text: Anopheles marshallii

text: Anopheles marshallii

text: Anopheles marshallii


text: Anopheles bellator

text: SC

text: public

text: Anopheles bellator

text: Anopheles bellator

text: Anopheles bellator


text: Anopheles ziemanni

text: SC

text: public

text: Anopheles ziemanni

text: Anopheles ziemanni

text: Anopheles ziemanni


text: Sabethes cyaneus

text: SC

text: public

text: Sabethes cyaneus

text: Sabethes cyaneus

text: Sabethes cyaneus


text: Anopheles coustani

text: SC

text: public

text: Anopheles coustani

text: Anopheles coustani

text: Anopheles coustani


text: Anopheles maculipalpis

text: SC

text: public

text: Anopheles maculipalpis

text: Anopheles maculipalpis

text: Anopheles maculipalpis


text: Anopheles nili

text: SC

text: public

text: Anopheles nili

text: Anopheles nili

text: Anopheles nili


text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Austria

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Austria

text: Austria

text: not provided

text: Gallus gallus

text: meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


text: DTU-GE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Austria

text: Austria

text: not provided

text: Meleagris gallopavo

text: caecal sample

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

text: public

text: Yes

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Austria

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: caecal sample

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Austria

text: Austria

text: not provided

text: Gallus gallus

characteristic: isolate

text: boot sock sample

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Austria

text: Austria

text: not provided

text: Gallus gallus

text: boot sock sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


text: DTU-GE

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Belgium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: caecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

text: not provided

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: meat

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

text: not provided

text: Bos taurus

text: caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Belgium

text: Belgium

text: not provided

text: Chondrichthyes

text: meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Meleagris gallopavo

text: meat

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: isolate

text: caecal sample

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

text: not provided

text: Gallus gallus

text: meat neck skin

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Belgium

text: Belgium

text: not provided

text: Gallus gallus

text: meat neck skin

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Monophasic TM 1,415,12:i:-

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: caecal sample

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

text: not provided

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: meat neck skin

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Belgium

text: Belgium

text: not provided

text: Gallus gallus

text: caecal sample

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Kedougou

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: caecal sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Minnesota

characteristic: serovar


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: meat neck skin

text: Salmonella enterica

text: Salmonella enterica

text: Newport


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Belgium

text: Belgium

text: not provided

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: caecal sample

text: Salmonella enterica

text: Salmonella enterica

text: Paratyphy B


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: meat neck skin

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Paratyphy B

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

text: not provided

text: Gallus gallus

text: caecal sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Bulgaria

text: Bulgaria

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: Caecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Bulgaria

text: Bulgaria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: broiler meat

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Bulgaria

text: Bulgaria

text: not provided

text: Gallus gallus

text: boot swabs

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Estonia

text: Estonia

text: not provided

text: Gallus gallus

text: caecal sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Estonia

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: meat sample

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

text: No

text: Finland

text: Finland

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: caecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: France

text: France

text: not provided

text: Gallus gallus

text: caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: France

text: France

text: not provided

text: Gallus gallus

text: meat sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Meleagris gallopavo

text: caecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (latitude)

text: not provided

text: Meleagris gallopavo

characteristic: host scientific name

characteristic: isolate

text: boot swabs

text: Salmonella enterica

text: Salmonella enterica

text: Bredeney

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: France

text: France

text: not provided

text: Meleagris gallopavo

text: boot swabs

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Coeln

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: France

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Meleagris gallopavo

text: boot swabs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Hadar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: boot swabs

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: France

text: France

text: not provided

text: Gallus gallus

characteristic: isolate

text: carcasses swabs

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Greece

text: Greece

text: not provided

text: Gallus gallus

text: caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

text: No

text: Greece

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: fresh meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: caecal sample

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Hungary

text: Hungary

text: not provided

text: Gallus gallus

characteristic: isolate

text: meat sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: Meleagris gallopavo

text: caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: environmental sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis

characteristic: serovar


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: faeces

text: Salmonella enterica

text: Salmonella enterica

text: Kentucky


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Hungary

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: Meleagris gallopavo

characteristic: isolate

text: environmental sample

text: Salmonella enterica

text: Salmonella enterica

text: Bredeney


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: environmental sample

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

text: not provided

text: Gallus gallus

text: faeces

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Hungary

text: Hungary

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: neck skin

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

characteristic: isolate

text: environmental sample

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

text: not provided

text: Meleagris gallopavo

text: environmental sample

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Newport

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Hungary

text: Hungary

text: not provided

text: Gallus gallus

text: faeces

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

text: No

text: Latvia

text: Latvia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: meat

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Lithuania

text: Lithuania

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: isolate

text: caecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Norway

text: Norway

text: not provided

text: Meleagris gallopavo

text: caecal

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

text: No

text: Portugal

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: cecal sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Portugal

text: Portugal

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: meat sample from retail

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Portugal

text: Portugal

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

characteristic: isolate

text: cecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Sus scrofa domesticus

text: Caecal sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Portugal

text: Portugal

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Meat carcase

text: Salmonella enterica

text: Salmonella enterica

text: Paratyphi B var. Java

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Portugal

text: Portugal

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: isolate

text: environmental sample boot swabs and dust

text: Salmonella enterica

text: Salmonella enterica

text: Havana


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Portugal

text: Portugal

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: food sample neck skin

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Macedonia

text: Macedonia

characteristic: geographic location (latitude)

text: not provided

characteristic: host health state

text: Coturnix japonica

text: faecal sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Romania

text: Romania

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: caecal sample

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Romania

text: Romania

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

characteristic: isolate

text: caecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Romania

text: Romania

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: boot swabs

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Romania

text: Romania

characteristic: geographic location (latitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


20537_2 PR_IISPV

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: 20537_2 PR_IISPV

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Romania

text: Romania

text: not provided

text: Meleagris gallopavo

characteristic: host scientific name

text: 20537_2 PR_IISPV

text: neck skin

text: Salmonella enterica

text: Salmonella enterica

text: Hadar

text: 20537_2 PR_IISPV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Slovakia

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: isolate

text: Environmetal sample boot swabs

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Enteritids


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Slovakia

text: Slovakia

characteristic: geographic location (latitude)

text: not provided

text: Meleagris gallopavo

text: Environmetal sample boot swabs

text: Salmonella enterica

text: Salmonella enterica

text: Kentucky

characteristic: serovar

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Slovakia

text: Slovakia

text: not provided

characteristic: host health state

text: Gallus gallus

text: Meat from broilers

text: Escherichia coli

characteristic: organism

text: Escherichia coli


AmpC 3901_18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: AmpC 3901_18

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Slovenia

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: AmpC 3901_18

text: caecal sample

text: Escherichia coli

text: Escherichia coli

text: AmpC 3901_18


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Slovenia

text: Slovenia

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

characteristic: isolate

text: caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Slovenia

text: Slovenia

text: not provided

text: Gallus gallus

text: meat sample

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Slovenia

text: Slovenia

text: not provided

characteristic: host health state

text: Gallus gallus

text: boot swabs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Spain

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: Caecum

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Spain

text: Spain

characteristic: geographic location (latitude)

text: not provided

text: Meleagris gallopavo

characteristic: isolate

text: Caecum

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Spain

text: Spain

text: not provided

characteristic: host health state

text: Gallus gallus

text: Faeces

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Spain

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: Faeces

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis

characteristic: serovar


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Spain

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

characteristic: host scientific name

text: Faeces

text: Salmonella enterica

text: Salmonella enterica

text: Kentucky


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Spain

text: Spain

text: not provided

text: Gallus gallus

characteristic: isolate

text: Faeces

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Spain

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Gallus gallus

text: meat

text: Escherichia coli

text: Escherichia coli

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Spain

text: Spain

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: meat

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Belgium

text: Belgium

characteristic: geographic location (longitude)

text: not provided

text: Bos taurus

characteristic: host scientific name

text: caecal sample

text: Escherichia coli

text: Escherichia coli


HPK 4490_18

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: HPK 4490_18

text: DTU-GE

text: DTU

text: No

text: Czech Republic

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: HPK 4490_18

characteristic: isolate

text: Caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli

text: HPK 4490_18


HPK 7185_18

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: HPK 7185_18

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Czech Republic

text: Czech Republic

characteristic: geographic location (latitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: HPK 7185_18

text: Caecal sample

text: Escherichia coli

text: Escherichia coli

text: HPK 7185_18

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Czech Republic

text: Czech Republic

text: not provided

text: Gallus gallus

text: meat neck skin

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


S 3569

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: S 3569

text: DTU-GE

text: DTU

text: No

text: Czech Republic

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: S 3569

text: boot swabs

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

text: S 3569


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Czech Republic

text: Czech Republic

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

characteristic: isolate

text: meat neck skin

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Finland

text: Finland

text: not provided

characteristic: host health state

text: Gallus gallus

text: caecal sample

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: caecal sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: meat sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: DTU-GE

text: DTU

text: No

text: Netherlands

text: Netherlands

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

characteristic: isolate

text: meat

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Netherlands

text: Netherlands

text: not provided

characteristic: host health state

text: Gallus gallus

text: neckskin

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Netherlands

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: neckskin

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Paratyphi B var Java


NCP_NL 2018_09

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

text: NCP_NL 2018_09

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Netherlands

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: NCP_NL 2018_09

text: overshoes

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

text: NCP_NL 2018_09


NCP_NL 2018_33

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

text: NCP_NL 2018_33

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collection date

text: No

text: Netherlands

text: Netherlands

text: not provided

characteristic: host health state

text: Gallus gallus

text: NCP_NL 2018_33

characteristic: isolate

text: overshoes

characteristic: isolation source host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

text: NCP_NL 2018_33


NRS 2018 ESBL 22.62

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: NRS 2018 ESBL 22.62

text: DTU-GE

text: DTU

text: No

text: Netherlands

text: Netherlands

text: not provided

text: Gallus gallus

text: NRS 2018 ESBL 22.62

text: caecum

text: Escherichia coli

text: Escherichia coli

text: NRS 2018 ESBL 22.62

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Romania

text: Romania

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: caecum sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Slovakia

text: Slovakia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: Meat from broilers

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Sweden

text: Sweden

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: isolate

text: caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Switzerland

text: Switzerland

text: not provided

text: Gallus gallus

text: ceacal sample

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: meat sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Switzerland

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: not specified

text: Salmonella enterica

text: Salmonella enterica

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: United Kingdom

text: United Kingdom

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: isolate

text: Caecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: United Kingdom

text: United Kingdom

text: not provided

text: Meleagris gallopavo

text: Caecal sample

text: Escherichia coli

text: Escherichia coli

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: United Kingdom

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Boot Swab

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Belgium

text: Belgium

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: caecal sample

text: Salmonella enterica

text: Salmonella enterica

text: Paratyphy B

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: France

text: France

text: not provided

text: Gallus gallus

characteristic: isolate

text: meat sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Greece

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: caecal sample

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

text: Yes

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Greece

text: Greece

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: boot swabs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Gloucester


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Hungary

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: meat sample

text: Escherichia coli

text: Escherichia coli


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Portugal

text: Portugal

text: not provided

text: Gallus gallus

characteristic: isolate

text: cecal sample

characteristic: isolation source host-associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

tag: Namespace:Kulakov National Medical Research Center of Obstetrics, Gynecology, and Perinatology, Ministry of Health of Russia

text: human

characteristic: common name

text: placenta out of the area of pathological invasion from the accreta group, patient 1

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: placenta

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kulakov National Medical Research Center of Obstetrics, Gynecology, and Perinatology, Ministry of Health of Russia

text: public

text: human

text: placenta out of the area of pathological invasion from the accreta group, patient 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: placenta


characteristic: INSDC last update

text: public

characteristic: SRA accession

text: human

text: placenta out of the area of pathological invasion from the accreta group, patient 3

text: Homo sapiens

text: Homo sapiens

text: placenta


characteristic: INSDC center name

text: public

text: human

text: placenta out of the area of pathological invasion from the increta group, patient 4

text: Homo sapiens

text: Homo sapiens

text: placenta


characteristic: INSDC first public

text: public

text: human

text: placenta out of the area of pathological invasion from the increta group, patient 8

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

characteristic: Submitter Id

text: human

text: placenta out of the area of pathological invasion from the increta group, patient 5

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta out of the area of pathological invasion from the percreta group, patient 6

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta out of the area of pathological invasion from the percreta group, patient 7

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta in the area of pathological invasion from the accreta group, patient 1

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta in the area of pathological invasion from the accreta group, patient 2

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta in the area of pathological invasion from the accreta group, patient 3

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta in the area of pathological invasion from the increta group, patient 4

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta in the area of pathological invasion from the increta group, patient 5

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta in the area of pathological invasion from the percreta group, patient 6

text: Homo sapiens

text: Homo sapiens

text: placenta


text: public

text: human

text: placenta in the area of pathological invasion from the percreta group, patient 7

text: Homo sapiens

text: Homo sapiens

text: placenta


text: THE ROSLIN INSTITUTE

text: public

tag: Namespace:THE ROSLIN INSTITUTE

text: cattle

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Bos taurus

text: Bos taurus

text: Female

characteristic: sex

text: Blood

text: Holstein Friesian 3465


text: THE ROSLIN INSTITUTE

text: public

text: cattle

text: United Kingdom

text: Bos taurus

text: Bos taurus

text: Female

text: Blood

text: Holstein Friesian 3649


text: THE ROSLIN INSTITUTE

text: public

text: cattle

text: United Kingdom

text: Bos taurus

text: Bos taurus

text: Female

text: Blood

text: Holstein Friesian 3666


text: THE ROSLIN INSTITUTE

text: public

text: cattle

text: United Kingdom

text: Bos taurus

text: Bos taurus

text: Female

text: Blood

text: Holstein Friesian 3683


text: public

text: E-MTAB-10202:Transcriptome_Control_Rep_1

tag: Namespace:Department of anesthesiology, The first affiliated hospital of Zhengzhou university

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: oxygen; 60 percent

characteristic: compound

text: Protocols: We got the mice from Shanghai SLAC Laboratory Animal (C57BL/J6, Shanghai, China) and separated the mice into three groups randomly. The mice stayed in a temperature and humidity-controlled environment with free access to standard rodent food and water. The mice received sevoflurane anesthesia using the protocol from Lu et al 2017 (PMID: 28968276). Briefly, one group of mice (defined as Group A) received 2.5% sevoflurane with 60% O2 at the flow rate of 2 L/min for 3 min and 1 L/min for 2 h on postnatal day 6, 7, 8, 9 in an anesthetizing chamber (Datex Ohmeda, Madison, USA). Another group of mice (defined as Group B) received 2.5% sevoflurane with 60% O2 at the flow rate of 2 L/min for 3 min and 1 L/min for 2 h on postnatal day 6, 7 in the same anesthetizing chamber. The control group received 60% O2 at the same flow rate and in the same anesthetizing chamber. Polysome fraction was isolated with the method from Lupinacci et al 2019 (PMID: 31052505) with small changes. Briefly, we lysed the hippocampus tissues in a Polytron with 400 uL lysis buffer (using 100 μg/mL cycloheximide), incubated the lysates on ice for 10 min and conducted centrifugation at 10000x g for 10 min at 4°C. The supernatants were collected and loaded into 10-50% sucrose gradients. Gradients were placed in a Beckman SW41Ti rotor and centrifuged at 39,000 rpm at 4 °C for 2.5 h, after which the polysome fractions were collected. Then, polysome-associated RNA was extracted with TRIZOL according to the manufacturer’s protocol (Invitrogen, Waltham, USA). Total RNA was extracted directly from the hippocampus tissues following the same TRIZOL protocol. The extracted RNA was treated with DNase to remove genomic DNA contamination. Isolation of mRNA was based on NEBNext PolyA mRNA Magnetic Isolation Module (New England Biolabs, Ipswich, USA) and the mRNA was further used with NEB Next Ultra Directional RNA Library Prep Kit for Illumina (New England Biolabs, Ipswich, USA) for sequencing library preparation.

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

unit: liter per minute

characteristic: dose

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: Mus musculus

characteristic: strain

unit: hour

characteristic: time

text: treated on days 6 to 9

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of anesthesiology, The first affiliated hospital of Zhengzhou university

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10202:Transcriptome_Control_Rep_2

text: ArrayExpress

text: house mouse

characteristic: common name

text: oxygen; 60 percent

characteristic: description

text: neonate

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: Mus musculus

characteristic: title

text: treated on days 6 to 9


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10202:Transcriptome_Group_A_Rep_1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: oxygen; 60 percent, sevoflurane; 0.25 percent

characteristic: compound

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: dose

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

text: Mus musculus

text: treated on days 6 to 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10202:Transcriptome_Group_A_Rep_2

text: ArrayExpress

text: house mouse

text: neonate

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: Mus musculus

characteristic: strain

characteristic: time

text: treated on days 6 to 9

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10202:Transcriptome_Group_B_Rep_1

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: Mus musculus

characteristic: title

text: treated on days 6 to 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10202:Transcriptome_Group_B_Rep_2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: compound

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: dose

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

text: Mus musculus

text: treated on days 6 to 7


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: oxygen; 60 percent

text: neonate

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: Mus musculus

characteristic: strain

characteristic: time

text: treated on days 6 to 9

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: Mus musculus

characteristic: title

text: treated on days 6 to 9


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: compound

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: dose

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

text: Mus musculus

text: treated on days 6 to 7


SF-I

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Microbiomex

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SF-I

characteristic: collection date

text: SF-I

text: Wastewater

characteristic: environment (biome)

text: Wastewater

characteristic: environment (feature)

text: Wastewater

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: environmental samples

characteristic: project name

text: environmental samples

text: Illumina

characteristic: sequencing method

text: SF-I

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: female

characteristic: ArrayExpress-SEX

text: Anopheles funestus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Female

characteristic: GENDER

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: African malaria mosquito

characteristic: common name

text: Anopheles funestus

characteristic: organism

text: Anopheles funestus

characteristic: title


text: wild type D6 Male

characteristic: ArrayExpress-PHENOTYPE

text: Schistosoma mansoni

text: Puerto Rican strain

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: wild type D6 Male

characteristic: PHENOTYPE

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni


text: wild type D6 Female

text: Schistosoma mansoni

characteristic: ArrayExpress-SPECIES

text: Puerto Rican strain

text: SC

text: public

text: wild type D6 Female

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni


text: wild type D13 Male

text: Schistosoma mansoni

text: Puerto Rican strain

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: wild type D13 Male

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni


text: wild type D13 Female

text: Schistosoma mansoni

text: Puerto Rican strain

characteristic: External Id

text: SC

text: public

text: wild type D13 Female

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni


text: medium

characteristic: Compound

text: 0 µM

characteristic: Concentration

text: 24 h

characteristic: Exposure time

text: public

tag: Namespace:Fraunhofer Institute for Toxicology and Experimental Medicine

text: single dose

characteristic: Treatment

text: complex (has to be extracted from test method description)

characteristic: Treatment scheme

text: EU-ToxRisk DCC

characteristic: broker name

text: human

text: Homo sapiens

text: Homo sapiens