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text: human

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text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-DJ

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

characteristic: subgroup

text: Ph-pos_59---c_pre-B---Ph-pos---1_ED---BM---IGH-DJ_S54

characteristic: title


characteristic: ENA-CHECKLIST

text: Laboratory for Specialized Hematological Diagnostics, Medical Department II, University Hospital Schleswig-Holstein

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1604

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-VJ-FR1

characteristic: description

text: c/pre-B

text: bone marrow

text: Homo sapiens

characteristic: person

text: Homo sapiens

text: Ph-pos

text: Ph-pos_59---c_pre-B---Ph-pos---1_ED---BM---IGH-VJ-FR1_S66


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1605

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: peripheral blood---IGH-DJ

text: c/pre-B

characteristic: immunophenotype

text: peripheral blood

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

text: Ph-pos_60---c_pre-B---Ph-pos---1_ED---PB---IGH-DJ_S51


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1606

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: peripheral blood---IGH-VJ-FR1

text: c/pre-B

text: peripheral blood

text: Homo sapiens

text: Homo sapiens

text: Ph-pos

text: Ph-pos_60---c_pre-B---Ph-pos---1_ED---PB---IGH-VJ-FR1_S63


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1607

text: human

text: Ph-pos---c/pre-B------timepoint: ED---material: peripheral blood---IGH-DJ

text: c/pre-B

text: peripheral blood

characteristic: material

text: Homo sapiens

characteristic: organism

text: IGH-DJ

text: Homo sapiens

text: Ph-pos_61---c_pre-B------1_ED---PB---IGH-DJ_S54


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1608

characteristic: Submitter Id

text: human

text: Ph-pos---c/pre-B------timepoint: ED---material: peripheral blood---IGH-VJ-FR1

text: c/pre-B

text: peripheral blood

text: Homo sapiens

text: Homo sapiens

text: Ph-pos_61---c_pre-B------1_ED---PB---IGH-VJ-FR1_S66


text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1609

text: human

characteristic: common name

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-DJ

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

characteristic: subgroup

characteristic: timepoint

text: Ph-pos_62---c_pre-B---Ph-pos---1_ED---BM---IGH-DJ_S56


characteristic: ENA-CHECKLIST

text: Laboratory for Specialized Hematological Diagnostics, Medical Department II, University Hospital Schleswig-Holstein

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1610

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-VJ-FR1

characteristic: description

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: Ph-pos

text: Ph-pos_62---c_pre-B---Ph-pos---1_ED---BM---IGH-VJ-FR1_S68

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1611

text: human

text: c/pre-B

text: bone marrow

text: Homo sapiens

characteristic: person

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

text: Ph-pos_66---c_pre-B---Ph-pos---1_ED---BM---IGH-DJ_S56


characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1612

text: human

text: c/pre-B

characteristic: immunophenotype

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: Ph-pos

text: Ph-pos_66---c_pre-B---Ph-pos---1_ED---BM---IGH-VJ-FR1_S68


characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1613

text: human

text: c/pre-B

text: bone marrow

characteristic: material

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

text: Ph-pos_67---c_pre-B---Ph-pos---1_ED---BM---IGH-DJ_S54


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1614

text: human

text: c/pre-B

text: bone marrow

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Ph-pos

text: Ph-pos_67---c_pre-B---Ph-pos---1_ED---BM---IGH-VJ-FR1_S66


text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1615

characteristic: Submitter Id

text: human

characteristic: common name

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

characteristic: subgroup

text: Ph-pos_68---c_pre-B---Ph-pos---1_ED---BM---IGH-DJ_S51


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1616

text: human

characteristic: description

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: Ph-pos

characteristic: timepoint

text: Ph-pos_68---c_pre-B---Ph-pos---1_ED---BM---IGH-VJ-FR1_S63


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1617

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-DJ

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

text: Ph-pos_69---c_pre-B---Ph-pos---1_ED---BM---IGH-DJ_S53

characteristic: title


characteristic: External Id

text: Laboratory for Specialized Hematological Diagnostics, Medical Department II, University Hospital Schleswig-Holstein

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:969-1618

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-VJ-FR1

text: c/pre-B

text: bone marrow

text: Homo sapiens

characteristic: person

text: Homo sapiens

text: Ph-pos

text: Ph-pos_69---c_pre-B---Ph-pos---1_ED---BM---IGH-VJ-FR1_S65


characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1619

text: human

text: Ph-pos---c/pre-B------timepoint: ED---material: bone marrow---IGH-DJ

text: c/pre-B

characteristic: immunophenotype

text: bone marrow

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos_73---c_pre-B------1_ED---BM---IGH-DJ_S58


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1620

text: human

text: Ph-pos---c/pre-B------timepoint: ED---material: bone marrow---IGH-VJ-FR1

text: c/pre-B

text: bone marrow

characteristic: material

text: Homo sapiens

text: Homo sapiens

text: Ph-pos_73---c_pre-B------1_ED---BM---IGH-VJ-FR1_S70


text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1621

characteristic: Submitter Id

text: human

characteristic: common name

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: peripheral blood---IGH-DJ

text: c/pre-B

text: peripheral blood

text: Homo sapiens

characteristic: organism

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

text: Ph-pos_74---c_pre-B---Ph-pos---1_ED---PB---IGH-DJ_S53


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1622

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: peripheral blood---IGH-VJ-FR1

characteristic: description

text: c/pre-B

text: peripheral blood

text: Homo sapiens

text: Homo sapiens

text: Ph-pos

characteristic: subgroup

text: Ph-pos_74---c_pre-B---Ph-pos---1_ED---PB---IGH-VJ-FR1_S65


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1623

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-DJ

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

characteristic: timepoint

text: Ph-pos_79---c_pre-B---Ph-pos---1_ED---BM---IGH-DJ_S50


characteristic: External Id

text: Laboratory for Specialized Hematological Diagnostics, Medical Department II, University Hospital Schleswig-Holstein

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1624

text: human

text: Ph-pos---c/pre-B---subgroup: Ph-pos---timepoint: ED---material: bone marrow---IGH-VJ-FR1

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: Ph-pos

text: Ph-pos_79---c_pre-B---Ph-pos---1_ED---BM---IGH-VJ-FR1_S62

characteristic: title


characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1625

text: human

text: Ph-pos---pro-B---subgroup: Ph-pos---timepoint: ED---material: peripheral blood---IGH-DJ

text: pro-B

text: peripheral blood

text: Homo sapiens

characteristic: person

text: IGH-DJ

text: Homo sapiens

text: Ph-pos

text: Ph-pos_81---pro-B---Ph-pos---1_ED---PB---IGH-DJ_S52


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1626

text: human

text: Ph-pos---pro-B---subgroup: Ph-pos---timepoint: ED---material: peripheral blood---IGH-VJ-FR1

text: pro-B

characteristic: immunophenotype

text: peripheral blood

text: Homo sapiens

text: Homo sapiens

text: Ph-pos

text: Ph-pos_81---pro-B---Ph-pos---1_ED---PB---IGH-VJ-FR1_S64


text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1627

characteristic: Submitter Id

text: human

characteristic: common name

text: Ph-pos---c/pre-B------timepoint: ED---material: bone marrow---IGH-DJ

text: c/pre-B

text: bone marrow

characteristic: material

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos_83---c_pre-B------1_ED---BM---IGH-DJ_S52


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1628

text: human

text: Ph-pos---c/pre-B------timepoint: ED---material: bone marrow---IGH-VJ-FR1

characteristic: description

text: c/pre-B

text: bone marrow

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Ph-pos_83---c_pre-B------1_ED---BM---IGH-VJ-FR1_S64


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1629

text: human

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: IGH-DJ

text: Homo sapiens

text: Ph-pos_88---c_pre-B------1_ED---BM---IGH-DJ_S56


characteristic: External Id

text: Laboratory for Specialized Hematological Diagnostics, Medical Department II, University Hospital Schleswig-Holstein

text: public

text: ena-SAMPLE-TAB-18-01-2023-08:01:13:970-1630

text: human

text: c/pre-B

text: bone marrow

text: Homo sapiens

text: Homo sapiens

characteristic: timepoint

text: Ph-pos_88---c_pre-B------1_ED---BM---IGH-VJ-FR1_S68


text: UNIVERSITY HOSPITAL JENA

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY HOSPITAL JENA

text: routine

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: bacteria

characteristic: isolate

text: Hospital

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Inland Norway university of applied sciences

text: Clinical Isolate

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella


text: Inland Norway university of applied sciences

text: public

characteristic: Submitter Id

text: Clinical Isolate

text: Escherichia coli

text: Escherichia coli

text: Escherichia


characteristic: ENA-CHECKLIST

text: public

text: Clinical Isolate

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter�


text: public

text: reference sample

characteristic: description

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4993373 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Ruminococcus sp.

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

characteristic: project name

characteristic: sample derived from

text: uncultured Ruminococcus sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4993373_bin.61_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Anaerotignum lactatifermentans

text: Anaerotignum lactatifermentans

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerotignum;s__Anaerotignum lactatifermentans

text: multi-marker approach

text: Binned metagenome: ERR4993373_bin.62_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4968586 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4968586_bin.3_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4968570 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4968570_bin.16_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4993382 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4993382_bin.70_MetaWRAP_v1.1_bin