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characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83621:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 0 -- North Pacific -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: ambient / starting community

text: Pacific Ocean

text: Bering Sea / Longhurst: NPPF or PSAE

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: Niskin bottles on CTD rosette -- filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 0 -- North Pacific -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 83620:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

tag: Namespace:Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

text: marine biome [ENVO:00000447]

text: GFBIO

unit: m

text: day 6 -- free-living -- DNA

text: sea water [ENVO:00002149]

text: water

text: alginate mesocosm

characteristic: experimental factor

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Equatorial Upwelling / Longhurst: PNEC

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: PowerWater

characteristic: nucleic acid extraction

text: seawater metagenome

characteristic: organism

text: FWD:CCTACGGGNGGCWGCAG REV:GACTACHVGGGTATCTAATCC; 341F-785R

characteristic: pcr primers

text: Bacterial community dynamics during alginate degradation in the South, Equatorial, and North Pacific Ocean

text: filtration (peristaltic pump)

characteristic: sample collection device or method

text: polycarbonate filter_0.2um

characteristic: sample material processing

text: day 6 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83619:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 3 -- free-living -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: alginate mesocosm

text: Pacific Ocean

text: Equatorial Upwelling / Longhurst: PNEC

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 3 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 83618:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

text: marine biome [ENVO:00000447]

text: GFBIO

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text: sea water [ENVO:00002149]

text: water

text: alginate mesocosm

characteristic: experimental factor

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Equatorial Upwelling / Longhurst: PNEC

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: PowerWater

characteristic: nucleic acid extraction

text: seawater metagenome

characteristic: organism

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characteristic: sample collection device or method

text: polycarbonate filter_0.2um

characteristic: sample material processing

text: day 1 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

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characteristic: target subfragment

characteristic: title

text: water

characteristic: water environmental package


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characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83617:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 6 -- free-living -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: control mesocosm

text: Pacific Ocean

text: Equatorial Upwelling / Longhurst: PNEC

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 6 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 83616:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

text: marine biome [ENVO:00000447]

text: GFBIO

text: day 3 -- free-living -- DNA

text: sea water [ENVO:00002149]

text: water

text: control mesocosm

characteristic: experimental factor

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Equatorial Upwelling / Longhurst: PNEC

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: PowerWater

characteristic: nucleic acid extraction

text: seawater metagenome

characteristic: organism

characteristic: pcr primers

text: filtration (peristaltic pump)

characteristic: sample collection device or method

text: polycarbonate filter_0.2um

characteristic: sample material processing

text: day 3 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83615:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 1 -- free-living -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: control mesocosm

text: Pacific Ocean

text: Equatorial Upwelling / Longhurst: PNEC

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 1 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 83614:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

text: marine biome [ENVO:00000447]

text: GFBIO

text: day 0 -- DNA

text: sea water [ENVO:00002149]

text: water

text: ambient / starting community

characteristic: experimental factor

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Equatorial Upwelling / Longhurst: PNEC

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: PowerWater

characteristic: nucleic acid extraction

text: seawater metagenome

characteristic: organism

characteristic: pcr primers

characteristic: sample collection device or method

text: polycarbonate filter_0.2um

characteristic: sample material processing

text: day 0 -- DNA

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83613:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 6 -- free-living -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: alginate mesocosm

text: Pacific Ocean

text: South Pacific Gyre / Longhurst: SPSG

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 6 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: public

text: 83612:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

text: marine biome [ENVO:00000447]

text: GFBIO

text: day 3 -- free-living -- DNA

text: sea water [ENVO:00002149]

text: water

text: alginate mesocosm

characteristic: experimental factor

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: South Pacific Gyre / Longhurst: SPSG

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: PowerWater

characteristic: nucleic acid extraction

text: seawater metagenome

characteristic: organism

characteristic: pcr primers

text: filtration (peristaltic pump)

characteristic: sample collection device or method

text: polycarbonate filter_0.2um

characteristic: sample material processing

text: day 3 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83611:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 1 -- free-living -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: alginate mesocosm

text: Pacific Ocean

text: South Pacific Gyre / Longhurst: SPSG

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 1 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 83610:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

text: marine biome [ENVO:00000447]

text: GFBIO

text: day 6 -- free-living -- DNA

text: sea water [ENVO:00002149]

text: water

text: control mesocosm

characteristic: experimental factor

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: South Pacific Gyre / Longhurst: SPSG

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: PowerWater

characteristic: nucleic acid extraction

text: seawater metagenome

characteristic: organism

characteristic: pcr primers

text: filtration (peristaltic pump)

characteristic: sample collection device or method

text: polycarbonate filter_0.2um

characteristic: sample material processing

text: day 6 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83609:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 3 -- free-living -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: control mesocosm

text: Pacific Ocean

text: South Pacific Gyre / Longhurst: SPSG

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 3 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 83608:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

text: marine biome [ENVO:00000447]

text: GFBIO

text: day 1 -- free-living -- DNA

text: sea water [ENVO:00002149]

text: water

text: control mesocosm

characteristic: experimental factor

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: South Pacific Gyre / Longhurst: SPSG

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: PowerWater

characteristic: nucleic acid extraction

text: seawater metagenome

characteristic: organism

characteristic: pcr primers

text: filtration (peristaltic pump)

characteristic: sample collection device or method

text: polycarbonate filter_0.2um

characteristic: sample material processing

text: day 1 -- free-living -- DNA

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83607:c39ced7b-4a0c-4c39-9f1a-7c6fec1040ef

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: day 0 -- DNA

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

characteristic: environmental package

text: ambient / starting community

text: Pacific Ocean

text: South Pacific Gyre / Longhurst: SPSG

characteristic: geographic location (region and locality)

text: mimarks-survey

text: microbial community [PCO:1000004]

text: PowerWater

text: seawater metagenome

characteristic: project name

text: Niskin bottles on CTD rosette; filtration (peristaltic pump)

text: polycarbonate filter_0.2um

text: day 0 -- DNA

text: seawater metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WAGENINGEN UNIVERSITY

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

text: Spain

characteristic: geographic location (country and/or sea)

text: Lactuca saligna

characteristic: organism

text: Lactuca saligna

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Cells were filtered through a 40 µm cell strainer (KKE3.1, Carl Roth) and processed for CUT&RUN (Zambanini et al., 2022). 500,000 cells/sample were harvested using either Trypsin EDTA 0.25% (HEK293Ts) or EDTA 0.5 mM in PBS (hESCs) and washed twice in DPBS (Cat. #14190094, Thermo Fisher Scientific). HEK293T cells (HEK293Ts) were cultured in medium consisting of DMEM, high glucose (41966-029, Gibco - Thermo Fisher Scientific) supplemented with 10% Calf Bovine Serum (12133C, Sigma-Aldrich) and 10 U/ml Penicillin-Streptomycin (15276355, Gibco - Thermo Fisher Scientific). HEK293Ts were passaged by incubation in Trypsin EDTA 0.25% (25-200-056, Thermo Fisher Scientific). hESCs were cultured in Essential 8TM medium (A1517001, ThermoFisher Scientific) in plates and flasks coated with 10ug/ml Vitronectin (A14700, ThermoFisher Scientific). Cells were passaged by incubation in 0.5 mM EDTA-PBS (stock: 0.5 M EDTA, AM9260G, Thermo Fisher Scientific). HEK293Ts were grown in culture medium supplemented with 10 nM LGK (S7143, Selleck Chemicals) for the 48 hours preceding the seeding. HEK293Ts were then seeded at a density of 104 cells/cm2 in culture medium (see “Cell Culture” section) supplemented with 10 nM LGK. After 24 hours, cells were cultured in medium supplemented with 10 mM CHIR99021 (SML1046, Sigma Aldrich). Medium and treatment were renewed every 24 hours. hESCs were seeded at a density of 104 cells/cm2 in Essential 8TM medium, and after 24 hours, they were cultured in Essential 8TM medium supplemented with 10 uM CHIR99021. Cells were then detached (as described in the “Sample collection protocol”) after 90 minutes, 4 hours, 24 hours, and 72 hours of CHIR treatment. All experiments were performed in triplicate (n = 3 for each cell type at each time-point). Cells were washed three times in Nuclear Extraction (NE) buffer (HEPES-KOH pH-8.2 [20 mM], KCl [10 mM], Spermi- dine [0.5 mM], IGEPAL [0.05%], Glycerol [20%], Roche Complete Protease Inhibitor EDTA-Free), then resuspended in 40 μl NE per sample and bound to 20 μl Magnetic ConA Agarose beads equilibrated in binding buffer. After incubation, nuclei and beads were resuspended for 5 minutes in EDTA wash buffer (wash buffer with EDTA [0.2 mM]). Samples were divided in 200 μl PCR tubes and antibody incubation was performed in 200 μl wash buffer with 2 μl of anti-β-catenin antibody (Cat. #ABIN2855042, antibodies-online) overnight (ON) at 4 °C on a rotator. After ON incubation, samples were washed five times in wash buffer and resuspended in 200 μl of pAG-MN buffer (wash buffer supplemented with pAG-MN 0.6 μg/ml) for 30 minutes at 4 °C on a rotator. Samples were washed five times, followed by digestion for 30 minutes in wet ice in wash buffer with 2 mM CaCl2. After 30 minutes, the digestion buffer was removed and the reaction was stopped with 50 μl of 1X Urea STOP buffer (NaCl [100 mM], EDTA [2 mM], EGTA [2 mM], IGEPAL [0.5%], Urea [8.8 M]) and the samples were incubated for 1 hour at 4°C. Beads were collected on the magnetic rack, while the liquid was transferred to a new PCR tube, where it was cleaned up twice using Mag-Bind TotalPure NGS beads (Cat. #M1327, Omega Bio- Tek) at 2X, and then resuspended in 20 μl Tris-HCl pH 7.5. Library preparation was performed using the KAPA Hyper Prep Kit for Illumina platforms (Cat. #KK8504, KAPA Biosystems) according to the manufacturer’s guidelines with the following modifications. End repair and A-tailing was performed with 0.4 size reactions with 20 µl of purified DNA. The thermocycler conditions were set to 12 °C for 15 min, 37 °C for 15 min and 58 °C for 25 min to prevent thermal degradation of the shortest fragments. Adapter ligation was done with 0.4 size reactions. KAPA Dual Indexed adapters were used at 0.15 µM. A post-ligation clean-up was performed with Mag-Bind TotalPure NGS beads at 1.2X. Resuspension was done in 10 mM Tris-HCl pH 8.0. Library amplification was performed with 0.5 size reactions. The cycling conditions were set as follows: 45 sec initial denaturation at 98 °C, 15 sec denaturation at 98 °C, 10 sec annealing/elongation at 60 °C, 1 min final extension at 72 °C, hold at 4 °C, with 13 cycles. After amplification, a post-amplification cleanup was performed with 1.2X beads. Libraries were then run on an E-Gel EX 2% agarose gel (Cat. # G402022, Invitrogen) for 10 min using the E-Gel Power Snap Electrophoresis System (Invitrogen). Bands of interest between 150 and 500 bp were cut out and purified using the GeneJET Gel Extraction Kit (Cat. #K0691, Thermo Scientific) according to manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: colorectal cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: colorectal cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: embryo

text: normal

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens


characteristic: External Id

text: Hopital Henri Mondor APHP

characteristic: INSDC center name

text: public

tag: Namespace:Hopital Henri Mondor APHP

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: Créteil

characteristic: geographic location (region and locality)

characteristic: isolate

text: Human

text: NextEra XT Illumina

characteristic: library construction method

text: Escherichia coli

text: Escherichia coli

characteristic: title


Bacillus

text: GENGS-CBMSO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bacillus

text: GENGS-CBMSO

text: Paired-end read

text: Bacillus sp. T2.9-1

text: Bacillus sp. T2.9-1

text: Paired-end read


Citrobacter

characteristic: ENA-CHECKLIST

text: GENGS-CBMSO

text: public

text: Citrobacter

characteristic: Submitter Id

text: GENGS-CBMSO

characteristic: broker name

text: Paired-end read

text: Citrobacter sp. T1.2D-1

text: Citrobacter sp. T1.2D-1

text: Paired-end read


Lelliottia

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GENGS-CBMSO

text: public

text: Lelliottia

text: GENGS-CBMSO

text: Paired-end read

characteristic: description

text: Lelliottia sp. T2.26D-8

text: Lelliottia sp. T2.26D-8

text: Paired-end read


Microbacterium

characteristic: External Id

text: GENGS-CBMSO

characteristic: INSDC center name

text: public

text: Microbacterium

text: GENGS-CBMSO

text: Paired-end read

text: Microbacterium sp. T2.11-28

characteristic: organism

text: Microbacterium sp. T2.11-28

text: Paired-end read


Nocardioides

text: GENGS-CBMSO

text: public

text: Nocardioides

text: GENGS-CBMSO

text: Paired-end read

text: Nocardioides sp. T2.26MG-1

text: Nocardioides sp. T2.26MG-1

text: Paired-end read


Pleomorphomonas

text: GENGS-CBMSO

text: public

text: Pleomorphomonas

text: GENGS-CBMSO

text: Paired-end read

text: Pleomorphomonas sp. T1.2MG-36

text: Pleomorphomonas sp. T1.2MG-36

text: Paired-end read


Pseudomonas

text: GENGS-CBMSO

text: public

text: Pseudomonas

text: GENGS-CBMSO

text: Paired-end read

text: Pseudomonas sp. T2.1D-1.1

text: Pseudomonas sp. T2.1D-1.1

text: Paired-end read


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Bacillus sp. T2.9-1

text: Bacillus sp. T2.9-1


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Citrobacter sp. T1.2D-1

text: Citrobacter sp. T1.2D-1


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Lelliottia sp. T2.26D-8

text: Lelliottia sp. T2.26D-8


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Microbacterium sp. T2.11-28

text: Microbacterium sp. T2.11-28


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Nocardioides sp. T2.26MG-1

text: Nocardioides sp. T2.26MG-1


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Pleomorphomonas sp. T1.2MG-36

text: Pleomorphomonas sp. T1.2MG-36


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Pseudomonas sp. T2.1D-1.1

text: Pseudomonas sp. T2.1D-1.1


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45543

tag: Namespace:University of Copenhagen, Faculty of Health and Medical Sciences

characteristic: collection date

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: bos taurus

characteristic: host scientific name

text: Cattle

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain


text: University of Copenhagen, Faculty of Health and Medical Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45544

text: Uganda

text: healthy

text: environment

characteristic: isolate

text: Household toilet

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45545

characteristic: Submitter Id

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45546

text: Uganda

text: healthy

text: Homo sapiens

text: Index patient

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45547

text: Uganda

text: healthy

text: Homo sapiens

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45548

characteristic: collection date

text: Uganda

text: healthy

text: environment

text: Ward trolleys

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45549

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:703-45550

text: Uganda

text: healthy

text: environment

characteristic: host scientific name

text: House hold Window

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45551

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45552

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45553

text: Uganda

text: healthy

text: Homo sapiens

characteristic: isolate

text: Index patient

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45554

characteristic: Submitter Id

text: Uganda

text: healthy

text: environment

text: Ward toilets

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45555

text: Uganda

text: healthy

text: goat

text: Goat

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45556

text: Uganda

text: healthy

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45557

characteristic: collection date

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45558

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

text: Index patient

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45559

text: Uganda

text: healthy

text: Homo sapiens

characteristic: host scientific name

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


text: University of Copenhagen, Faculty of Health and Medical Sciences

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45560

text: Uganda

text: healthy

text: environment

text: Ward bathrooms

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45561

text: Uganda

text: healthy

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45562

text: Uganda

text: healthy

text: pig

characteristic: isolate

text: Pig

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45563

characteristic: Submitter Id

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45564

text: Uganda

text: healthy

text: environment

text: Hospital equipment

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45565

text: Uganda

text: healthy

text: Homo sapiens

text: Index patient

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45566

characteristic: collection date

text: Uganda

text: healthy

text: Homo sapiens

text: Index patient

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45567

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45568

text: Uganda

text: healthy

text: Homo sapiens

characteristic: host scientific name

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:704-45569

text: Uganda

text: healthy

text: pig

text: Pig

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45570

text: Uganda

text: healthy

text: animal

text: Animal rectal swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45571

text: Uganda

text: healthy

text: goat

characteristic: isolate

text: Goat

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45572

characteristic: Submitter Id

text: Uganda

text: healthy

text: environment

text: Household soil

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45573

text: Uganda

text: healthy

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45574

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45575

characteristic: collection date

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: University of Copenhagen, Faculty of Health and Medical Sciences

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45576

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: environment

text: Household toilet

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45577

text: Uganda

text: healthy

text: Homo sapiens

characteristic: host scientific name

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45578

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45579

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45580

text: Uganda

text: healthy

text: Homo sapiens

characteristic: isolate

text: Index patient

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45581

characteristic: Submitter Id

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45582

text: Uganda

text: healthy

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45583

text: Uganda

text: healthy

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45584

characteristic: collection date

text: Uganda

text: healthy

text: chicken

text: Chicken

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45585

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: pig

text: Pig

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45586

text: Uganda

text: healthy

text: Homo sapiens

characteristic: host scientific name

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45587

text: Uganda

text: healthy

text: Homo sapiens

text: Index patient

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:705-45588

text: Uganda

text: healthy

text: environment

text: Hospital sewer

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45589

text: Uganda

text: healthy

text: environment

characteristic: isolate

text: Ward Floor

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45590

characteristic: Submitter Id

text: Uganda

text: healthy

text: environment

text: Ward trolleys

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45591

text: Uganda

text: healthy

text: environment

text: Ward BP machines

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: University of Copenhagen, Faculty of Health and Medical Sciences

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45592

text: Uganda

text: healthy

text: environment

text: Ward Floor

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45593

characteristic: collection date

text: Uganda

text: healthy

text: Homo sapiens

text: Health care worker

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45594

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45595

text: Uganda

text: healthy

text: Homo sapiens

characteristic: host scientific name

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45596

text: Uganda

text: healthy

text: Homo sapiens

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45597

text: Uganda

text: healthy

text: Homo sapiens

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45598

text: Uganda

text: healthy

text: Homo sapiens

characteristic: isolate

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45599

characteristic: Submitter Id

text: Uganda

text: healthy

text: Homo sapiens

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45600

text: Uganda

text: healthy

text: Homo sapiens

text: Health care worker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45601

text: Uganda

text: healthy

text: Homo sapiens

text: Index patient

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45602

characteristic: collection date

text: Uganda

text: healthy

text: pig

text: Pig

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45603

text: Uganda

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

text: Household family member

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45604

text: Uganda

text: healthy

text: gallus gallus

characteristic: host scientific name

text: Chicken

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45605

text: Uganda

text: healthy

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45606

text: Uganda

text: healthy

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:706-45607

text: Uganda

text: healthy

text: Homo sapiens

characteristic: isolate

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: University of Copenhagen, Faculty of Health and Medical Sciences

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:707-45608

characteristic: Submitter Id

text: Uganda

text: healthy

text: environment

text: Ward trolleys

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-04-2023-09:11:57:707-45609

text: Uganda

text: healthy

text: Homo sapiens

text: Caretaker

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-SIRL00017713/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-SIRL00017229/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-SIRL00018008/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

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characteristic: broker name

text: National Virus Reference Laboratory

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text: Europe / Ireland / Dublin

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characteristic: host health state

text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-SIRL00018041/2023


text: NVRL

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characteristic: geographic location (latitude)

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text: Europe / Ireland / Dublin

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text: NVRL

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characteristic: geographic location (latitude)

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text: Europe / Ireland / Dublin

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text: Europe / Ireland / Dublin

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text: hCoV-19/Ireland/D-NVRL-SIRL00017521/2023

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text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Dublin

text: human

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characteristic: host health state

text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-SIRL00017673/2023


text: NVRL

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text: Europe / Ireland / Dublin

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text: hCoV-19/Ireland/D-NVRL-SIRL00017524/2023

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characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

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characteristic: host health state

text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-SIRL00017785/2023


text: NVRL

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text: Europe / Ireland / Dublin

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characteristic: broker name

text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Dublin

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characteristic: host health state

text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-SIRL00017238/2023


text: NVRL

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

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text: Europe / Ireland / Dublin

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text: human

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characteristic: broker name

text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Dublin

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characteristic: host health state

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text: Europe / Ireland / Dublin

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: female

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text: hCoV-19/Ireland/D-NVRL-SIRL00017066/2023


text: NVRL

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text: Human coronavirus 2019

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

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text: hCoV-19/Ireland/D-NVRL-SIRL00016845/2023

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Galway

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/G-NVRL-SIRL00017682/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

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text: not provided

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: female

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/G-NVRL-SIRL00017560/2023

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

text: human

text: not provided

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characteristic: host health state

text: Homo sapiens

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text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-SIRL00017710/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

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text: Human coronavirus 2019

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text: Ireland

characteristic: geographic location (latitude)

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text: Europe / Ireland / Kildare

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text: human

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text: hCoV-19/Ireland/KE-NVRL-SIRL00017758/2023

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characteristic: broker name

text: National Virus Reference Laboratory

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text: not provided

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text: Ireland

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text: Europe / Ireland / Kildare

text: human

text: not provided

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characteristic: host health state

text: Homo sapiens

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text: female

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text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-SIRL00017711/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

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text: Human coronavirus 2019

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

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text: hCoV-19/Ireland/KE-NVRL-SIRL00017753/2023

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kerry

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KY-NVRL-SIRL00017737/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

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text: not provided

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text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Louth

characteristic: geographic location (region and locality)

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text: human

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text: female

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text: hCoV-19/Ireland/LH-NVRL-SIRL00017728/2023

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characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Louth

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LH-NVRL-SIRL00017715/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Limerick

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: male

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/LK-NVRL-SIRL00017549/2023

characteristic: title

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Limerick

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: female

text: not provided

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/LK-NVRL-SIRL00017712/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Leitrim

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: not provided

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text: female

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: active surveillance in response to outbreak

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text: hCoV-19/Ireland/LM-NVRL-SIRL00017695/2023

characteristic: title

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Laois

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LS-NVRL-SIRL00017704/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

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text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Laois

characteristic: geographic location (region and locality)

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text: human

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text: not provided

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/LS-NVRL-SIRL00017755/2023

characteristic: title

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text: NVRL

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Laois

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LS-NVRL-SIRL00017701/2023


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

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text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Laois

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

text: Homo sapiens

text: female

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text: hCoV-19/Ireland/LS-NVRL-SIRL00017749/2023

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characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Laois

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

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characteristic: organism

text: hCoV-19/Ireland/LS-NVRL-SIRL00017756/2023


text: NVRL

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text: National Virus Reference Laboratory

characteristic: collecting institution

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

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text: human

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text: not provided

text: Homo sapiens

text: female

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text: not provided

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text: hCoV-19/Ireland/MH-NVRL-SIRL00017553/2023

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characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-SIRL00017739/2023


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

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text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

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text: not provided

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text: hCoV-19/Ireland/MH-NVRL-SIRL00017716/2023

characteristic: title

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text: NVRL

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text: public

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characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-SIRL00017699/2023


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Monaghan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: not provided

text: Homo sapiens

text: male

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text: not provided

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text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

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text: hCoV-19/Ireland/MN-NVRL-SIRL00017724/2023

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text: public

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characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Mayo

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MO-NVRL-SIRL00017688/2023


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

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text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Mayo

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: female

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text: not provided

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text: hCoV-19/Ireland/MO-NVRL-SIRL00017738/2023

characteristic: title

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characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Mayo

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text: not provided

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text: Homo sapiens

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text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/MO-NVRL-SIRL00017742/2023


text: NVRL

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text: National Virus Reference Laboratory

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

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text: Europe / Ireland / Roscommon

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text: human

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text: not provided

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text: not provided

text: Homo sapiens

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: active surveillance in response to outbreak

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text: hCoV-19/Ireland/RN-NVRL-SIRL00017732/2023

characteristic: title

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text: NVRL

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characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/TA-NVRL-SIRL00017545/2023


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

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text: human

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text: female

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/TA-NVRL-SIRL00017689/2023

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characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Westmeath

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: female

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text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WH-NVRL-SIRL00017697/2023


text: NVRL

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text: National Virus Reference Laboratory

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wicklow

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: not provided

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text: hCoV-19/Ireland/WW-NVRL-SIRL00017217/2023

characteristic: title

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text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wexford

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-SIRL00017745/2023


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (latitude)

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text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: not provided

text: Homo sapiens

text: female

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/WX-NVRL-SIRL00017533/2023

characteristic: title

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wexford

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-SIRL00017538/2023