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text: Staphylococcus aureus


characteristic: ENA-FIRST-PUBLIC

text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: FLUID

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: EYE

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: External Id

text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: BLOOD

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

characteristic: INSDC status

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

characteristic: SRA accession

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: EAR

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

characteristic: Submitter Id

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: TRACHEAL ASPIRATE

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

characteristic: description

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: ENDT ASP

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: Alive

text: Homo sapinens

text: Homo sapinens

text: SPUTUM LUNG

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: LEFT FOOT

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


text: KAIMRC

characteristic: INSDC center name

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: TOE/TISSUE

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

characteristic: INSDC first public

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: FINGER

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

characteristic: INSDC last update

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: LEFT HIP

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

characteristic: host health state

text: Homo sapinens

text: Homo sapinens

text: NASAL

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

characteristic: host scientific name

text: Homo sapinens

text: TISSUE

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

characteristic: isolate

text: WOUND

text: Staphylococcus aureus

text: Staphylococcus aureus


text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: PERIPHERAL

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-CHECKLIST

text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: PEG SITE

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-FIRST-PUBLIC

text: KAIMRC

text: public

text: Saudi Arabia

text: Alive

text: Homo sapinens

text: Homo sapinens

text: SPUTUM

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

text: Ruhr University Bochum

text: public

tag: Namespace:Ruhr University Bochum

text: human

characteristic: common name

text: monocytes

text: Homo sapiens

text: Homo sapiens

text: PTSD patient prae


characteristic: External Id

text: Ruhr University Bochum

text: public

characteristic: INSDC status

text: human

text: monocytes

text: Homo sapiens

text: Homo sapiens

text: PTSD patient post


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: GISAID Accession ID

text: public

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: not provided

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUTE OF APPLIED BIOSCIENCES - CERTH

characteristic: Submitter Id

text: not provided

characteristic: collecting institution

text: not provided

characteristic: collection date

text: not provided

characteristic: common name

characteristic: description

text: Greece

text: not provided

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: not provided

text: RNA

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSTITUTE OF APPLIED BIOSCIENCES - CERTH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: not provided

text: not provided

characteristic: collector name

text: Greece

text: not provided

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: sample capture status


E-MTAB-12525:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12525:Sample 2

tag: Namespace:Medical University of Vienna Center for Cancer Research

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: house mouse

text: Protocols: Intestines were isolated, flushed with Hank’s balanced salt solution, and opened longitudinally. Tissue pieces of 2^3 mm were shaken in Hank’s balanced salt solution containing 30 mM EDTA for the small intestine and 40 mM EDTA for the colon at 37°C for 15 minutes. The supernatant was filtered and centrifuged. The cell pellet was washed once with ice-cold phosphate-buffered saline and snap-frozen in liquid N2 for RNA or protein isolation Total RNA from purified epithelial cells were extracted using TRIzol Reagent (Thermo Fisher Scientific) according to the instructions of the manufacturer. Second-strand cDNA synthesis was performed using DNA polymerase I and RNase H. cDNA was end-repaired, A-tailed, ligated to adapters and amplified to create the final cDNA library for sequencing (HiSeq2000, Illumina).

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: intestine

characteristic: organism part

text: Mus musculus

text: Sample 2

characteristic: title


E-MTAB-12525:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Medical University of Vienna Center for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12525:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: normal

text: CDHR5 -/-

text: Mus musculus

text: Mus musculus

text: intestine

text: Mus musculus

text: Sample 5


E-MTAB-12525:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-12525:Sample 6

text: ArrayExpress

text: epithelial cell

text: house mouse

text: adult

text: normal

text: CDHR5 -/-

text: Mus musculus

text: Mus musculus

text: intestine

text: Mus musculus

text: Sample 6


E-MTAB-12525:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-12525:Sample 8

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: house mouse

text: adult

characteristic: developmental stage

text: normal

text: CDHR5 -/-

text: Mus musculus

text: Mus musculus

text: intestine

text: Mus musculus

text: Sample 8


E-MTAB-12525:Sample 1

text: public

text: E-MTAB-12525:Sample 1

text: ArrayExpress

text: epithelial cell

text: house mouse

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: intestine

text: Mus musculus

text: Sample 1


E-MTAB-12525:Sample 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12525:Sample 3

text: ArrayExpress

text: epithelial cell

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: intestine

characteristic: organism part

text: Mus musculus

text: Sample 3

characteristic: title


E-MTAB-12525:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12525:Sample 4

text: ArrayExpress

text: epithelial cell

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: intestine

text: Mus musculus

text: Sample 4


E-MTAB-12525:Sample 7

characteristic: INSDC last update

text: public

text: E-MTAB-12525:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: house mouse

characteristic: common name

text: adult

text: normal

text: CDHR5 -/-

text: Mus musculus

text: Mus musculus

text: intestine

text: Mus musculus

text: Sample 7


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IGTP

text: public

text: Irsicaixa

characteristic: collecting institution

characteristic: collection date

text: Pista group

characteristic: collector name

text: Viral isolate from MPXV lession

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Catalunya, Badalona

characteristic: geographic location (region and locality)

text: other

characteristic: host behaviour

text: human

characteristic: host common name

text: other

characteristic: host habitat

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: sample code 340050320

characteristic: host subject id

text: Supernatant from vero E6 cells

characteristic: isolate

text: Monkeypox virus

text: other

characteristic: sample capture status

text: Monkeypox virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Systems Genomics

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-03-04-2023-21:37:47:713-4

tag: Namespace:Institute for Systems Genomics

characteristic: Submitter Id

text: Ashley Ridlon

text: Field Museum

characteristic: collecting institution

text: Promethion long reads of reference tree

text: USA

text: not provided

text: not provided

text: Texas

text: Private facility

characteristic: habitat

text: adult

characteristic: lifestage

text: Cacatua haematuropygia

characteristic: organism

text: whole blood

characteristic: organism part

text: ORG.one sequencing of the Red Vented Cockatoo

characteristic: project name

text: Cacatua haematuropygia

text: Female

characteristic: sex

text: sequence

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

characteristic: broker name

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


sour cherry_3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Julius Kuehn Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sour cherry_3

tag: Namespace:Julius Kuehn Institute

text: leaf material_3

text: Prunus cerasus

text: Prunus cerasus

text: cultivar Schattenmorelle accession KIZC99-2_3


sour cherry_4

text: Julius Kuehn Institute

text: public

characteristic: SRA accession

text: sour cherry_4

characteristic: Submitter Id

text: leaf material_4

text: Prunus cerasus

text: Prunus cerasus

text: cultivar Schattenmorelle accession KIZC99-2_4


sour cherry_5

text: Julius Kuehn Institute

text: public

text: sour cherry_5

text: leaf material_5

text: Prunus cerasus

characteristic: organism

text: Prunus cerasus

text: cultivar Schattenmorelle accession KIZC99-2_5


sour cherry_6

characteristic: ENA-LAST-UPDATE

text: Julius Kuehn Institute

text: public

text: sour cherry_6

text: leaf material_6

text: Prunus cerasus

text: Prunus cerasus

text: cultivar Schattenmorelle accession KIZC99-2_6


characteristic: External Id

text: IZSLER

text: public

characteristic: collection date

text: Sequencing of Listeria monocytogenes isolated from fish and supermarket

text: Italy

text: not provided

characteristic: host scientific name

characteristic: isolate

text: environmental

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Food Biotechnology Department, Instituto de la Grasa (CSIC), Carretera de Utrera, km 1, 41013 Seville, Spain.

text: Ruiz-Barba J.L., Higinio Sánchez A., López-López A., Cortés-Delgado A., Montaño A.

characteristic: authors

text: Food research institution

characteristic: broad-scale environmental context

text: FISABIONGS

characteristic: broker name

text: Spanish-style green-olive fermenting brine

characteristic: description

text: Table olive fermenting brine

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 30-L fermenter at pilot plant

characteristic: local environmental context

text: food fermentation metagenome

text: Microbial community and volatilome changes in brines along the spontaneous fermentation of Spanish-style and Natural-style green table olives (Manzanilla cultivar)

characteristic: project name

text: food fermentation metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Food Biotechnology Department, Instituto de la Grasa (CSIC), Carretera de Utrera, km 1, 41013 Seville, Spain.

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Food research institution

text: FISABIONGS

text: Table olive fermenting brine

text: Spain

characteristic: geographic location (country and/or sea)

text: 30-L fermenter at pilot plant

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Wageningen University and Research

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_01, timepoint 0H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

text: Sample VOL_01, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ileum

characteristic: local environmental context

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_01, timepoint 8H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

characteristic: project name

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_02, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

text: ileum

text: human gut metagenome

characteristic: organism

text: INSIDE survival

text: human gut metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

characteristic: broad-scale environmental context

text: Sample VOL_02, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

characteristic: collection date

text: Sample VOL_02, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_02, timepoint 8H

text: ileal effluent

text: Netherlands

text: ileum

characteristic: local environmental context

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_03, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

text: ileum

text: human gut metagenome

characteristic: organism

text: INSIDE survival

characteristic: project name

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_03, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome

characteristic: title


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_03, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (latitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_03, timepoint 8H

text: ileal effluent

text: Netherlands

characteristic: geographic location (longitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_05, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

text: ileum

characteristic: local environmental context

text: human gut metagenome

characteristic: organism

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_05, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

characteristic: project name

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_05, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_05, timepoint 8H

text: ileal effluent

text: Netherlands

characteristic: geographic location (latitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_06, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: ileum

characteristic: local environmental context

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_06, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

characteristic: organism

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_06, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

characteristic: project name

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_06, timepoint 8H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome

characteristic: title


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_07, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_07, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

characteristic: local environmental context

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_07, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

text: ileum

text: human gut metagenome

characteristic: organism

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_07, timepoint 8H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

characteristic: project name

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_08, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_08, timepoint 12H

text: ileal effluent

text: Netherlands

characteristic: geographic location (longitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_08, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

text: ileum

characteristic: local environmental context

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_08, timepoint 8H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

characteristic: organism

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_10, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

characteristic: project name

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_10, timepoint 4H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome

characteristic: title


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_10, timepoint 8H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (longitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_10, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

characteristic: local environmental context

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_11, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: ileum

text: human gut metagenome

characteristic: organism

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_11, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

characteristic: project name

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_11, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_11, timepoint 8H

text: ileal effluent

text: Netherlands

characteristic: geographic location (longitude)

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: Sample VOL_13, timepoint 0H

text: ileal effluent

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: ileum

characteristic: local environmental context

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome

text: Sample VOL_13, timepoint 12H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

characteristic: organism

text: INSIDE survival

text: human gut metagenome


text: Wageningen University and Research

text: public

text: urban biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample VOL_13, timepoint 4H

characteristic: description

text: ileal effluent

characteristic: environmental medium

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

characteristic: project name

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: Sample VOL_13, timepoint 8H

text: ileal effluent

text: Netherlands

text: ileum

text: human gut metagenome

text: INSIDE survival

text: human gut metagenome

characteristic: title


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:562-3413

tag: Namespace:Hospital General Universitario Gregorio Maranon

characteristic: Submitter Id

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital General Universitario Gregorio Maranon

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:562-3414

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

characteristic: organism

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3415

characteristic: collection date

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3416

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3417

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus subsp. massiliense str. GO 06


characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3418

text: Spain

text: not applicable

text: Human

text: Sputum


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3419

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3420

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977

characteristic: title


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3421

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3422

characteristic: Submitter Id

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3423

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:563-3424

text: Spain

text: not applicable

characteristic: host health state

text: Human

text: Sputum


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3425

text: Spain

text: not applicable

text: Human

characteristic: host scientific name

text: Sputum


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3426

text: Spain

text: not applicable

text: Human

characteristic: isolate

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3427

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3428

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: Hospital General Universitario Gregorio Maranon

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3429

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3430

text: Spain

text: not applicable

text: Human

text: Sputum


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3431

text: Spain

text: not applicable

text: Human

text: Sputum

characteristic: organism


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3432

characteristic: collection date

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3433

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3434

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:564-3435

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3436

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3437

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977

characteristic: title


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3438

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3439

characteristic: Submitter Id

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3440

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3441

text: Spain

text: not applicable

characteristic: host health state

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3442

text: Spain

text: not applicable

text: Human

characteristic: host scientific name

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3443

text: Spain

text: not applicable

text: Human

characteristic: isolate

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:565-3444

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: External Id

text: Hospital General Universitario Gregorio Maranon

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3445

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3446

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3447

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3448

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

characteristic: organism

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3449

characteristic: collection date

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3450

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3451

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3452

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3453

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3454

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977

characteristic: title


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:566-3455

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3456

characteristic: Submitter Id

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3457

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3458

text: Spain

text: not applicable

characteristic: host health state

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3459

text: Spain

text: not applicable

text: Human

characteristic: host scientific name

text: BAL

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3460

text: Spain

text: not applicable

text: Human

characteristic: isolate

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: ENA-LAST-UPDATE

text: Hospital General Universitario Gregorio Maranon

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3461

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3462

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-04-04-2023-11:52:51:567-3463

text: Spain

text: not applicable

text: Human

text: Sputum

text: Mycobacteroides abscessus ATCC 19977

text: Mycobacteroides abscessus ATCC 19977


characteristic: INSDC first public

text: public

tag: Namespace:University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology Biotechnology and Environmental Protection

text: rhizosphere soil taken from phytoremediation experiment

characteristic: description

text: Poland

text: soil metagenome

text: soil metagenome

text: inoculation 1 day 20 rep 1


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Lysis

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: restricted access

characteristic: isolate

text: Throat/Nasal

characteristic: title


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Throat/Nasal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Utrecht

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

text: not provided

text: restricted access

text: Throat/Nasal

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status


text: National Institute of Chemistry

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:National Institute of Chemistry

text: Sequences of RNA isolated from subunits of VLPT43C+D136C filaments encapsidating CP RNA after pulldown

characteristic: description

text: Escherichia coli BL21(DE3)

text: Escherichia coli BL21(DE3)

characteristic: title


characteristic: ENA-CHECKLIST

text: National Institute of Chemistry

text: public

text: Sequences of RNA isolated from subunits of VLPT43C+D136C filaments encapsidating CP-p97 RNA after pulldown

text: Escherichia coli BL21(DE3)

text: Escherichia coli BL21(DE3)


characteristic: ENA-FIRST-PUBLIC

text: National Institute of Chemistry

text: public

text: Sequences of total RNA isolated from host organism expressing subunits of VLPT43C+D136C filaments and CP-p97

text: Escherichia coli BL21(DE3)

text: Escherichia coli BL21(DE3)


E-MTAB-12824:Sample 1

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 1

tag: Namespace:UNIVERSITY OF MANCHESTER

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: Protocols: Cells from kidney organoids were collected at day 0, 7, 12, 19 and 25 of the differentiation protocol. CRISPR/Cas9 gene editing was used to mutate HNF1B in MAN13 hESCs (PMID: 28583200). We first constructed a pair of plasmids expressing the nickase (D10A) version of Cas9 (Cas9 n ) and a gRNA each. The two gRNAs targeted the Cas9 n to nick at position 231 of the coding strand of HNF1B and at position 171 of the complementary strand, resulting in a deletion of 58 bases (plus/minus any indels) near the beginning of the coding sequence of the gene (Fig. 1A). Each gRNA-coding insert was designed as a pair of oligonucleotides that, upon annealing, produced overhangs that allowed cloning into the pX461 plasmid vector, (Addgene, #48140), under the control of a U6 promoter. The vector also expresses Cas9 n , and a GFP tag for cell sorting. The primers used to create the inserts are listed in Table S2. Each pair of oligonucleotides was annealed and phosphorylated, using T4 Polynucleotide Kinase (NEB, #M0201S), then ligated into BbsI-digested pX461, to produce pX461-gRNA(HNF1B/231+) and pX461-gRNA(HNF1B/177-). 4x10 5 MAN13 hESCs were nucleofected with both pX461-gRNA(HNF1B/231+) and pX461-gRNA(HNF1B/177-), using the AmaxaTM P3 Primary Cell 4D-NucleofectorTM X Kit L (Lonza, #V4XP-3024), in 100μl nucleofection buffer according to the manufacturer’s instructions, on a Lonza 4D-Nucleofector (program DN100). 1ml of TeSR1 medium, containing 10 μM ROCK inhibitor, was then added to the cell mix and the cells were plated on a well of a 12-well plate coated with Vitronectin. The medium was replaced 16h later with 1ml fresh TeSR1 medium. Two days post-nucleofection, the cells were collected by TrypLE treatment (Life Technlogies, #12605-028) for 2min at 37 o C and sorted for GFP fluorescence on a BD FACSAria Fusion flow cytometer. Two aliquots of the sorted, GFP+ cells of 5,000 and 10,000 cells were then plated in one Vitronectin-coated well each in a 6-well plate. The rest of the GFP+ cells (approximately 35,000) were plated on a separate well and – when confluent – they were stored in liquid N 2 , as backup. After 8-15 days, separate cell colonies had emerged on the sparsely seeded plates. Each was manually passaged, using a flame-pulled glass Pasteur pipette, into a separate well of a 24-well plate. Each clonal line thus produced was expanded further by EDTA passaging when confluent, and genomic DNA (gDNA) was extracted for genotyping using the Wizard® Genomic DNA Purification Kit (Promega, #A1120). A 781bp fragment around the expected mutation site was amplified by PCR, using Herculase II polymerase (Agilent, #600675) and was then sequenced to verify the presence/absence of the deletion. Of 21 clones isolated and sequenced, 3 were heterozygous mutants and one (IBM13-19) was studied further. This clone carried a frameshift in exon 1 (Fig. 1B) such that mutant mRNA would contain a premature stop codon 51 nucleotides downstream. A wild-type clone (IBM13-08) constituted an isogenic non-mutant control line. Samples were taken at time points in the differentiation of stem cells to organoids. The first differentiation steps occur in 2D over 7 days when dissociated cells are plated onto the air/medium interface of semipermeable membranes andthen maintained in 3D organoid culture for a further 18 days. Differentiation of cells into kidney in 2D and 3D (organoids) was performed as described previously (PMID: 29429961; PMID: 26444236), substituting APELTM with APELTM2 medium, supplemented with 1% (v/v) PFHM-II Protein-Free Hybridoma Medium (Thermo Fisher Scientific, # 11370882), hereafter referred to as APELTM2. For 2D differentiation, stem cells were plated on Vitronectin-coated plates, at a density of 18,000 cells cm -2 in culture medium containing 10μM Y-27632. The following day the medium was replaced with STEMdiffTM APELTM2 (StemCell Technologies, #05270), containing 8 μM CHIR-99021 (Tocris, #4423) for three days, followed by APELTM2 supplemented with 200 ng ml −1 FGF9 (Peprotech, #100-23) and 1 μg ml −1 heparin (Sigma, #3149) for a further 10 days. Subsequently, the cells were cultured in basal APELTM2 medium which was changed daily. For 3D organoid cultures was performed according as described (PMID: 26444236). Cells were differentiated for the first 7 days as in the 2D protocol above, except that APEL/CHIR-99021 medium was used for the first four days. On day 7, cells were dissociated with TrypLE. Aliquots of 2x10 5 cells were centrifuged at 400g for 2 min and the pellets were subsequently cultured on a medium-air interface by transfer onto a MilliCell cell culture insert (0.4μm pore size; Millipore, #PICM03050) inserted into the wells of 6-well plates. Upon transfer, the cells were exposed to APELTM2 medium containing 5μM CHIR-99021 for 1h, before reverting back to APELTM2 with FGF9/Heparin for a further 5 days. Finally, the 3D cultures were maintained in basal APELTM2 medium for up to another 13 days. Total RNA was extracted using the miRVana miRNA isolation kit (Thermo Fisher, AM1560) without using the optional miRNA-enriching protocol Truseq stranded mRNA Assay. Paired end.

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-12824:Sample 11

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 11


E-MTAB-12824:Sample 12

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 12

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 12

characteristic: title


E-MTAB-12824:Sample 13

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 13

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 13


E-MTAB-12824:Sample 14

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 14

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: Sample 14


E-MTAB-12824:Sample 15

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 15

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 15


E-MTAB-12824:Sample 2

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 2

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 2


E-MTAB-12824:Sample 21

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 21

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 21

characteristic: title


E-MTAB-12824:Sample 22

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 22

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 22


E-MTAB-12824:Sample 23

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 23

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: Sample 23


E-MTAB-12824:Sample 24

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 24

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 24


E-MTAB-12824:Sample 25

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 25

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 25


E-MTAB-12824:Sample 3

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 3

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-12824:Sample 31

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 31

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 31


E-MTAB-12824:Sample 4

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: Sample 4


E-MTAB-12824:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 5

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 5


E-MTAB-12824:Sample 10

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 10

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: CRISPR/Cas9 HNF1B mutation

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 10


E-MTAB-12824:Sample 16

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 16

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 16

characteristic: title


E-MTAB-12824:Sample 17

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 17

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 17


E-MTAB-12824:Sample 18

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 18

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: Sample 18


E-MTAB-12824:Sample 19

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 19

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: CRISPR/Cas9 HNF1B mutation

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 19