E-MTAB-11580:Sample 21

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11580:Sample 21

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 21


E-MTAB-11580:Sample 12

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11580:Sample 12

tag: Namespace:UNIVERSITY OF MANCHESTER

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: All stocks were grown and maintained at 20°C and raised at 25°C for experiments on standard fly food media (yeast 50g/L, glucose 78g/L, maize 72g/L, agar 8g/L, 10% nipagen in EtOH 27mL/L and proprionic acid 3mL/L). The following fly lines were used in this study, y1 w* (BDSC Stock #6599), y1 w*; P{His2Av-mRFP1}II.2 (BDSC Stock #23651). Flies carrying His-RFP were allowed to lay on apple juice agar plates in small cages for 1 hour. Embryos were dechorinated in 50% bleach (2.5% final concentration of sodium hypochlorite diluted in distilled water) for 3 minutes and washed thoroughly in distilled water. Individual embryos were carefully transferred into a droplet of halocarbon oil (Sigma-Aldrich; a mix of 700 and 27 oil at a ratio of 1:4) on a rectangular coverslip (Deltalab, 24X50mm, Nr. 1) and inverted over a cavity slide (Karl Hecht). Embryos were visualised and imaged with a Leica optigrid microscope at 20X magnification using a Texas red filter. Embryos were timed following the observation of a nuclear division, an image was taken and the embryo was immediately picked out of the oil droplet with a pipette tip and transferred to Eppendorf tubes containing 50μL TRIzol Reagent (Invitrogen). Single embryos were crushed and homogenised using a pipettetip and an additional 450uL Trizol added. Samples were immediately snap frozen in liquid nitrogen and stored at -80°C until processing for nucleic acid extraction. Ten timepoints were collected spanning early Drosophila embryonic development from nc11 through to cephalic furrow formation (Table 1). Embryos were collected 5 minutes after nuclear division for nc11 and nc12, 5 and 15 minutes following the nc13 nuclear division and every 15 minutes following the nc14 nuclear division as well as embryos that showed clear cephalic furrow formation. This yielded samples covering every 10-15 minutes through development from nc11 to cephalic furrow formation. The internuclear distance of 15-20 nuclei pairs per embryo was measured in Fiji and normalised to the whole embryo length to obtain an average internuclear distance per embryo (Figure S1A and B). This was compared to the internuclear distance of embryos of known stages to accurately confirm the nuclear cleavage stage and age of embryos. All embryos were collected at 20°C with approximate time after egg lay in minutes shown in Table 1. Three female embryos from each time point were used as replicates to make 30 individual RNAseq libraries. Samples stored in Trizol (Invitrogen) were used for RNA extraction according to the manufacturer’s protocol and resuspended in 10μL (RNA) nuclease free water. Total RNA was treated with TURBO DNA-free Kit Dnase (Invitrogen) and depleted of rRNA using the Ribo-Zero Magnetic Kit HMN/Mouse/Rat 24 Rxn (Illumina; Cat# MRZH11124) according to the manufacturer’s protocol using a low input protocol with 2-4μL rRNA removal solution yielding a 20μL final sample volume added to 90μL magnetic beads. Beads were resuspended in 35μL resuspension solution and ribo-depleted total RNA was ethanol precipitated and resuspended in 18μL FPF mix prior to RNAseq library preparation. Individual total RNAseq libraries were prepared from ribo-depleted RNA using a TruSeq stranded library prep kit (Illumina) according to the manufacturer’s protocol.

characteristic: description

text: embryo stage

characteristic: developmental stage

text: pool of 3 embryos

characteristic: individual

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: female

characteristic: sex

characteristic: strain

text: Sample 12

characteristic: title


E-MTAB-11580:Sample 2

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11580:Sample 2

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: y1 w*; P{His2Av-mRFP1}II.2 (BDSC Stock #23651)

text: Sample 2


E-MTAB-11580:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 22

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 22


E-MTAB-11580:Sample 13

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11580:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 13


E-MTAB-11580:Sample 23

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 23

text: ArrayExpress

text: fruit fly

characteristic: description

text: embryo stage

characteristic: developmental stage

text: pool of 3 embryos

characteristic: individual

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 23


E-MTAB-11580:Sample 3

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 3

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: female

characteristic: sex

characteristic: strain

text: Sample 3

characteristic: title


E-MTAB-11580:Sample 14

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11580:Sample 14

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 14


E-MTAB-11580:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 24

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 24


E-MTAB-11580:Sample 4

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11580:Sample 4

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 4


E-MTAB-11580:Sample 15

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 15

text: ArrayExpress

text: fruit fly

characteristic: description

text: embryo stage

characteristic: developmental stage

text: pool of 3 embryos

characteristic: individual

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 15


E-MTAB-11580:Sample 25

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 25

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: female

characteristic: sex

characteristic: strain

text: Sample 25

characteristic: title


E-MTAB-11580:Sample 5

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11580:Sample 5

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 5


E-MTAB-11580:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 16

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 16


E-MTAB-11580:Sample 26

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11580:Sample 26

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 26


E-MTAB-11580:Sample 6

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 6

text: ArrayExpress

text: fruit fly

characteristic: description

text: embryo stage

characteristic: developmental stage

text: pool of 3 embryos

characteristic: individual

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 6


E-MTAB-11580:Sample 17

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 17

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: female

characteristic: sex

characteristic: strain

text: Sample 17

characteristic: title


E-MTAB-11580:Sample 27

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11580:Sample 27

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 27


E-MTAB-11580:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 7

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 7


E-MTAB-11580:Sample 18

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11580:Sample 18

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 18


E-MTAB-11580:Sample 28

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 28

text: ArrayExpress

text: fruit fly

characteristic: description

text: embryo stage

characteristic: developmental stage

text: pool of 3 embryos

characteristic: individual

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 28


E-MTAB-11580:Sample 8

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 8

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: female

characteristic: sex

characteristic: strain

text: Sample 8

characteristic: title


E-MTAB-11580:Sample 19

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11580:Sample 19

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 19


E-MTAB-11580:Sample 29

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 29

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 29


E-MTAB-11580:Sample 9

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11580:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 9


E-MTAB-11580:Sample 10

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 10

text: ArrayExpress

text: fruit fly

characteristic: description

text: embryo stage

characteristic: developmental stage

text: pool of 3 embryos

characteristic: individual

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 10


E-MTAB-11580:Sample 20

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11580:Sample 20

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: female

characteristic: sex

characteristic: strain

text: Sample 20

characteristic: title


E-MTAB-11580:Sample 30

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11580:Sample 30

text: ArrayExpress

text: fruit fly

text: embryo stage

text: pool of 3 embryos

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: female

text: Sample 30


E-MTAB-11581:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11581:Sample 1

tag: Namespace:Departamento de Produccion Animal, Facultad de Veterinaria, Universidad de Leon

unit: year

characteristic: age

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: Protocols: Milk samples for RNA extraction were collected at the end of the adaptation period (no-MFD, control samples) from all goats, and at the end of the fish-oil (FO) supplementation period from goats selected as RESPO− and RESPO+. Milk samples were collected 1 hour after milking and 10 min after injection of 5 IU of oxytocin/animal (Facilpart, Laboratorios SYVA, León, Spain) to maximize milk somatic cell concentration. To prevent RNA degradation, udders were cleaned with soap and water and disinfected with povidone-iodine, and the nipples were also flushed with RNAseZap (Ambion, Austin, TX, USA). A sterile gauze was used to cover the collection tube to avoid contamination. 25 Murciano-Granadina goats (body weight: 30.5 ± 3.6 kg) at a similar stage of their first lactation (days in milk: 40.1 ± 5.9) were housed in individual tie stalls. During a 3 wk adaptation period, goats were fed a total mixed ration (TMR) formulated with alfalfa hay (particle size > 4 cm) and concentrate (forage:concentrate ratio 50:50) without lipid supplementation. Subsequently, goats were supplemented with 20 g of fish oil (FO; Afampes 121 DHA, Afamsa, Mos, Spain)/kg of diet DM, which is known to cause milk fat depression in dairy goats, for 5 additional weeks to induce a stable inhibition in milk fat synthesis. At the end of this second period, and on the basis of the magnitude of MFD, the 5 most-responsive goats (RESPO+; with a mean decrease in milk fat content of 26.0%) and the 5 least-responsive goats (RESPO−; with a mean decrease in milk fat content of 9.7%) were selected. Animals were milked once daily at approximately 0830 h in a 10-stall milking parlor (DeLaval, Madrid, Spain). They had ad libitum access to diets daily, and clean drinking water was available at all times. For RNA extraction, the MSCs from 50 mL of fresh milk were pelleted by centrifugation at 650×g for 10min at 4 °C in the presence of a final concentration of 0.5 mM of EDTA. Then, the pellet was washed three times with 10, 2 and 1.5 mL of PBS (pH 7.2 and 0.5 mM of EDTA) followed by centrifugation at 650×g for 10 min at 4 °C. The last pellet was used for RNA extraction using 500 μL of TRIzol (Invitrogen, Carlsbad, CA, USA). The RNA sequencing was conducted at CNAG (Centro Nacional de Análisis Genómico, Barcelona, Spain), where the TruSeq Stranded Total RNA Library Prep Kit (Illumina, San Diego, CA, USA) was used for library preparation.

text: adult

text: control

characteristic: diet

text: Capra hircus

text: Capra hircus

text: milk

characteristic: organism substance

text: control

characteristic: response to treatment

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 1


E-MTAB-11581:Sample 10

text: Departamento de Produccion Animal, Facultad de Veterinaria, Universidad de Leon

text: public

characteristic: SRA accession

text: E-MTAB-11581:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mammary epithelial cell

text: goat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: fish oil supplementation

text: Capra hircus

characteristic: organism

text: Capra hircus

text: milk

text: high response

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 10


E-MTAB-11581:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11581:Sample 11

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: adult

text: fish oil supplementation

text: Capra hircus

text: Capra hircus

text: milk

text: low response

text: Capra hircus

text: female

characteristic: sex

text: Murciano-Granadina

characteristic: strain

text: Sample 11

characteristic: title


E-MTAB-11581:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-11581:Sample 12

characteristic: age

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: adult

text: fish oil supplementation

text: Capra hircus

text: Capra hircus

text: milk

text: low response

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 12


E-MTAB-11581:Sample 13

text: public

characteristic: SRA accession

text: E-MTAB-11581:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mammary epithelial cell

text: goat

text: adult

text: fish oil supplementation

characteristic: diet

text: Capra hircus

text: Capra hircus

text: milk

characteristic: organism substance

text: low response

characteristic: response to treatment

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 13


E-MTAB-11581:Sample 14

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11581:Sample 14

text: ArrayExpress

text: mammary epithelial cell

text: goat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: fish oil supplementation

text: Capra hircus

characteristic: organism

text: Capra hircus

text: milk

text: low response

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 14


E-MTAB-11581:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11581:Sample 15

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: adult

text: fish oil supplementation

text: Capra hircus

text: Capra hircus

text: milk

text: low response

text: Capra hircus

text: female

characteristic: sex

text: Murciano-Granadina

characteristic: strain

text: Sample 15

characteristic: title


E-MTAB-11581:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11581:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: adult

text: control

text: Capra hircus

text: Capra hircus

text: milk

text: control

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 2


E-MTAB-11581:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11581:Sample 3

text: ArrayExpress

characteristic: broker name

text: mammary epithelial cell

text: goat

text: adult

text: control

characteristic: diet

text: Capra hircus

text: Capra hircus

text: milk

characteristic: organism substance

text: control

characteristic: response to treatment

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 3


E-MTAB-11581:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11581:Sample 4

text: ArrayExpress

text: mammary epithelial cell

text: goat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: control

text: Capra hircus

characteristic: organism

text: Capra hircus

text: milk

text: control

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 4


E-MTAB-11581:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-11581:Sample 5

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: adult

text: control

text: Capra hircus

text: Capra hircus

text: milk

text: control

text: Capra hircus

text: female

characteristic: sex

text: Murciano-Granadina

characteristic: strain

text: Sample 5

characteristic: title


E-MTAB-11581:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11581:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: adult

text: fish oil supplementation

text: Capra hircus

text: Capra hircus

text: milk

text: high response

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 6


E-MTAB-11581:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11581:Sample 7

text: ArrayExpress

characteristic: broker name

text: mammary epithelial cell

text: goat

text: adult

text: fish oil supplementation

characteristic: diet

text: Capra hircus

text: Capra hircus

text: milk

characteristic: organism substance

text: high response

characteristic: response to treatment

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 7


E-MTAB-11581:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11581:Sample 8

text: ArrayExpress

text: mammary epithelial cell

text: goat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: fish oil supplementation

text: Capra hircus

characteristic: organism

text: Capra hircus

text: milk

text: high response

text: Capra hircus

text: female

text: Murciano-Granadina

text: Sample 8


E-MTAB-11581:Sample 9

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11581:Sample 9

text: ArrayExpress

text: mammary epithelial cell

text: goat

text: adult

text: fish oil supplementation

text: Capra hircus

text: Capra hircus

text: milk

text: high response

text: Capra hircus

text: female

characteristic: sex

text: Murciano-Granadina

characteristic: strain

text: Sample 9

characteristic: title


E-MTAB-11584:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MICHIGAN

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11584:Sample 1

tag: Namespace:UNIVERSITY OF MICHIGAN

characteristic: Submitter Id

text: ArrayExpress

text: splenocyte

text: house mouse

text: Protocols: Spleens were collected from mice from each treatment condition and processed into a single cell suspension. Mice were treated with saline, one dose of ONP-302 (1 mg/dose), three consecutive daily doses of ONP-302, or three doses of ONP-302 every three days Nucleic acids were extracted using the 10X Genomics platform for Gel Bead-In Emulsion generation and barcoding Library construction was conducted with the Chromium Single Gel Bead-In Emulsion Sing Cell 3' reagent kit 3.1

text: adult

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: female

text: Sample 1


E-MTAB-11584:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MICHIGAN

text: public

text: E-MTAB-11584:Sample 2

text: ArrayExpress

characteristic: broker name

text: splenocyte

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: female

text: Sample 2


E-MTAB-11584:Sample 3

text: UNIVERSITY OF MICHIGAN

text: public

text: E-MTAB-11584:Sample 3

text: ArrayExpress

text: splenocyte

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: female

text: Sample 3


E-MTAB-11584:Sample 4

text: UNIVERSITY OF MICHIGAN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11584:Sample 4

text: ArrayExpress

text: splenocyte

text: house mouse

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: female

text: Sample 4


Heli

text: Weizmann Institute of Science

characteristic: INSDC last update

text: public

text: Heli

tag: Namespace:Weizmann Institute of Science

text: not collected

characteristic: collection date

text: Helichrysum umbraculigerum is a fast-growing, erect, perennial herb, prolific producer of phytocannabinoids

text: 1.3 Gb

characteristic: estimated size

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: Grew from seeds

characteristic: isolation and growth condition

characteristic: number of replicons

text: Helichrysum umbraculigerum

text: Heli

characteristic: organism common name

text: Young

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: Cuttings

characteristic: propagation

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Seeds

characteristic: source material identifiers

text: Helichrysum umbraculigerum Leaves


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HZI - HELMHOLTZ CENTRE FOR INFECTION RESEARCH, BRAUNSCHWEIG, GERMANY

characteristic: Submitter Id

characteristic: description

text: Stenotrophomonas bentonitica

characteristic: organism

text: Stenotrophomonas bentonitica

characteristic: title


text: HZI - HELMHOLTZ CENTRE FOR INFECTION RESEARCH, BRAUNSCHWEIG, GERMANY

text: public

text: Stenotrophomonas bentonitica

text: Stenotrophomonas bentonitica


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA01.03 from cage CA01 with treatment CC; Raw data

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

unit: °C

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

unit: g

characteristic: host total mass

text: Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

unit: day

characteristic: trial length

characteristic: trial timepoint

type: EXTERNAL LINKS

type: BIOGENIC AMINES

type: SAMPLE

value: Project

value: HoloFood

value: Body site

value: ileum mucosa

value: Organism

value: Chicken

value: Sample code

value: Experiment

value: transcriptomics

type: TRIAL

value: Trial description

value: Trial 1

value: Trial code


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA01.03 from cage CA01 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title

value: caecum mucosa

value: CA

value: Trial start


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA01.09 from cage CA01 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA01.09 from cage CA01 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA01.15 from cage CA01 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Trial end


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA01.15 from cage CA01 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA02.15 from cage CA02 with treatment CO; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA02.15 from cage CA02 with treatment CO; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA04.01 from cage CA04 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA04.01 from cage CA04 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA04.12 from cage CA04 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA04.12 from cage CA04 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA04.14 from cage CA04 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA04.14 from cage CA04 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA05.03 from cage CA05 with treatment CE; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA11.02 from cage CA11 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Control

text: Campylobacter:NS;Salmonella:NS;Clostridium:NS

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA11.02 from cage CA11 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA11.08 from cage CA11 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA11.08 from cage CA11 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA11.18 from cage CA11 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA11.18 from cage CA11 with treatment CC; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA13.06 from cage CA13 with treatment CE; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Prebiotic

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Caecum mucosa; animal CA13.06 from cage CA13 with treatment CE; Raw data

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: cDNA

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host transcriptome data from Ileum mucosa; animal CA14.02 from cage CA14 with treatment CC; Raw data

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

characteristic: library name

text: cDNA

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint