characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University Department of Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Lund University Department of Biology

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: oats

characteristic: common name

text: Belinda

characteristic: cultivar

text: Protocols: The second leaf of the two-week-old seedlings (two leaf stage) were gently brushed 10 times from the base to the top with a soft brush with 7 cm fibres. For RNA-seq transcript analysis, leaves were harvested 0, 25 min, 1h and 2h after touch treatment, and then snap-frozen in liquid N2 and stored at -80°C until use. To study touch-mediated molecular responses in cereal, Triticum aestivum (Chinese spring), Hordeum vulgare (Morex), and Avena sativa (Belinda) were grown as follows. The grains were grown in soil mixture (soil, perlite) under greenhouse conditions (25°C, 16h light/ 8h dark, 100 µmol m-2s-1). For treated samples (time point 22 minutes), the second leaf of the plant was gently brushed around 10 times with a soft hand brush. Data were processed using Demultiplexing and quality controlled with FastQC. Preparation of the samples for RNA isolation was done by grinding them in a mortar and pestle. The mortar and pestle were first cooled using liquid nitrogen and then frozen samples were transferred into the mortar. The samples were ground to a fine powder in the mortar with a pestle while adding liquid nitrogen whenever needed to prevent the sample from thawing. Approximately 100 milligrams of the powdered sample were transferred into microfuge tubes and placed in liquid nitrogen to prevent thawing. Once all 36 samples were prepared, RNA was extracted from them using the Qiagen RNeasy Plant Mini Kit (Qiagen. catalog no: 74904), following the manufacturer’s protocol with a slight modification. The DNase treatment was performed to remove genomic DNA contamination, which may produce non-specific amplicons during qPCR reaction. The column was then washed twice with RPE buffer followed by a dry spin for 1 minute to dry the membrane before finally eluting the RNA with 30 µL RNase-free water. 500 ng of total RNA was used for library preparation using Illumina TruSeq mRNA (poly-A selection) and TruSeq RNA UD Indexes for up to 96 samples (Illumina, 20022371).

characteristic: description

text: LP.02 two leaves visible stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Avena sativa

characteristic: organism

text: Avena sativa

text: second leaf

characteristic: organism part

characteristic: replicate

text: Avena sativa


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University Department of Biology

text: public

text: ArrayExpress

text: oats

text: Belinda

text: LP.02 two leaves visible stage

text: wild type genotype

text: Avena sativa

text: Avena sativa

text: second leaf

text: Avena sativa

text: brushed

characteristic: stimulus

characteristic: title


text: Lund University Department of Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Morex

text: LP.02 two leaves visible stage

text: wild type genotype

text: Hordeum vulgare

text: Hordeum vulgare

text: second leaf

text: Hordeum vulgare


text: Lund University Department of Biology

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Morex

characteristic: cultivar

characteristic: description

text: LP.02 two leaves visible stage

characteristic: developmental stage

text: wild type genotype

text: Hordeum vulgare

text: Hordeum vulgare

text: second leaf

text: Hordeum vulgare

text: brushed


characteristic: ENA-CHECKLIST

text: Lund University Department of Biology

text: public

text: ArrayExpress

text: bread wheat

characteristic: common name

text: Chinese Spring

text: LP.02 two leaves visible stage

text: wild type genotype

characteristic: genotype

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: second leaf

characteristic: organism part

characteristic: replicate

text: Triticum aestivum


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University Department of Biology

characteristic: INSDC center name

text: public

text: ArrayExpress

text: bread wheat

text: Chinese Spring

text: LP.02 two leaves visible stage

text: wild type genotype

text: Triticum aestivum

text: Triticum aestivum

text: second leaf

text: Triticum aestivum

text: brushed

characteristic: stimulus

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Methylotenera

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Methylotenera oryzisoli

characteristic: project name

characteristic: sample derived from

text: Methylotenera oryzisoli

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Gammaproteobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Flavobacterium psychrophilum

characteristic: project name

characteristic: sample derived from

text: Flavobacterium psychrophilum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Methylotenera oryzisoli

characteristic: organism

text: Methylotenera oryzisoli

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Cytophagia; Cytophagales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Spirosoma fluviale

characteristic: project name

characteristic: sample derived from

text: Spirosoma fluviale

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flectobacillus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Flectobacillus sp. BAB-3569

characteristic: organism

text: Flectobacillus sp. BAB-3569

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Crocinitomicaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Lishizhenia tianjinensis

characteristic: project name

characteristic: sample derived from

text: Lishizhenia tianjinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chryseobacterium gleum

characteristic: project name

characteristic: sample derived from

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Spirosoma fluviale

characteristic: organism

text: Spirosoma fluviale

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chryseobacterium gleum

characteristic: project name

characteristic: sample derived from

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pedosphaera parvula Ellin514

characteristic: project name

characteristic: sample derived from

text: Pedosphaera parvula Ellin514

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Akkermansia muciniphila

characteristic: organism

text: Akkermansia muciniphila

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Deltaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Syntrophobacter sp. SbD2

characteristic: project name

characteristic: sample derived from

text: Syntrophobacter sp. SbD2

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Midichloriaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Fokinia solitaria

characteristic: organism

text: Candidatus Fokinia solitaria

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobiaceae; Prosthecobacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Prosthecobacter debontii

characteristic: project name

characteristic: sample derived from

text: Prosthecobacter debontii

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria; Candidatus Nanopelagicales; Candidatus Nanopelagicaceae; Candidatus Planktophila

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Planktophila lacus

characteristic: organism

text: Candidatus Planktophila lacus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rhodoluna

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhodoluna limnophila

characteristic: project name

characteristic: sample derived from

text: Rhodoluna limnophila

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Limnohabitans

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Limnohabitans sp. Rim8

characteristic: organism

text: Limnohabitans sp. Rim8

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Verrucomicrobia; Opitutae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Opitutus sp. GAS368

characteristic: project name

characteristic: sample derived from

text: Opitutus sp. GAS368

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Polaromonas sp. YR568

characteristic: organism

text: Polaromonas sp. YR568

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Actinobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bifidobacterium breve

characteristic: project name

characteristic: sample derived from

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Flavobacterium psychrophilum

characteristic: organism

text: Flavobacterium psychrophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Sediminibacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sediminibacterium ginsengisoli

characteristic: organism

text: Sediminibacterium ginsengisoli

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhodoferax sp. OV413

characteristic: project name

characteristic: sample derived from

text: Rhodoferax sp. OV413

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Polynucleobacter meluiroseus

characteristic: organism

text: Polynucleobacter meluiroseus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Gammaproteobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Alphaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chryseobacterium gleum

characteristic: organism

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingomonas paucimobilis

characteristic: organism

text: Sphingomonas paucimobilis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Comamonas sp. lk

characteristic: project name

characteristic: sample derived from

text: Comamonas sp. lk

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria; Candidatus Nanopelagicales; Candidatus Nanopelagicaceae; Candidatus Planktophila

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Planktophila lacus

characteristic: organism

text: Candidatus Planktophila lacus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chryseobacterium gleum

characteristic: project name

characteristic: sample derived from

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bifidobacterium breve

characteristic: organism

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Actinobacteria; Micrococcales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Auritidibacter sp. Marseille-P8566

characteristic: project name

characteristic: sample derived from

text: Auritidibacter sp. Marseille-P8566

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Verrucomicrobia; Opitutae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Opitutus sp. GAS368

characteristic: organism

text: Opitutus sp. GAS368

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Spirosoma fluviale

characteristic: project name

characteristic: sample derived from

text: Spirosoma fluviale

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rhodoluna

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Rhodoluna limnophila

characteristic: organism

text: Rhodoluna limnophila

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Actinobacteria; Candidatus Nanopelagicales; Candidatus Nanopelagicaceae; Candidatus Nanopelagicus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Nanopelagicus abundans

characteristic: project name

characteristic: sample derived from

text: Candidatus Nanopelagicus abundans

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Verrucomicrobia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Akkermansia muciniphila

characteristic: organism

text: Akkermansia muciniphila

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Gulosibacter sp. Marseille-P7157

characteristic: project name

characteristic: sample derived from

text: Gulosibacter sp. Marseille-P7157

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bifidobacterium breve

characteristic: organism

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudorhodobacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pseudorhodobacter antarcticus

characteristic: project name

characteristic: sample derived from

text: Pseudorhodobacter antarcticus

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chryseobacterium gleum

characteristic: project name

characteristic: sample derived from

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Rhizobium sp. Q54

characteristic: organism

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingobacterium thalpophilum

characteristic: project name

characteristic: sample derived from

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Flavobacterium psychrophilum

characteristic: organism

text: Flavobacterium psychrophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Planktophila lacus

characteristic: project name

characteristic: sample derived from

text: Candidatus Planktophila lacus

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Sediminibacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sediminibacterium ginsengisoli

characteristic: organism

text: Sediminibacterium ginsengisoli

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chryseobacterium gleum

characteristic: project name

characteristic: sample derived from

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Crocinitomicaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Lishizhenia tianjinensis

characteristic: organism

text: Lishizhenia tianjinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Polaromonas sp. YR568

characteristic: organism

text: Polaromonas sp. YR568

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingobacterium thalpophilum

characteristic: project name

characteristic: sample derived from

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Verrucomicrobia; Opitutae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Opitutus sp. GAS368

characteristic: organism

text: Opitutus sp. GAS368

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bifidobacterium breve

characteristic: project name

characteristic: sample derived from

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Limnohabitans

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Limnohabitans sp. Rim8

characteristic: organism

text: Limnohabitans sp. Rim8

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pedobacter schmidteae

characteristic: project name

characteristic: sample derived from

text: Pedobacter schmidteae

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rhodoluna

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Rhodoluna limnophila

characteristic: organism

text: Rhodoluna limnophila

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Actinobacteria; Micrococcales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Auritidibacter sp. Marseille-P8566

characteristic: project name

characteristic: sample derived from

text: Auritidibacter sp. Marseille-P8566

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Cyanobacteria; ; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chryseobacterium gleum

characteristic: project name

characteristic: sample derived from

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Acidimicrobium ferrooxidans DSM 10331

characteristic: organism

text: Acidimicrobium ferrooxidans DSM 10331

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rickettsia typhi

characteristic: project name

characteristic: sample derived from

text: Rickettsia typhi

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Chloroflexi

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thermoflexus hugenholtzii JAD2

characteristic: organism

text: Thermoflexus hugenholtzii JAD2

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Methylotenera

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Methylotenera oryzisoli

characteristic: project name

characteristic: sample derived from

text: Methylotenera oryzisoli

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria; Candidatus Nanopelagicales; Candidatus Nanopelagicaceae; Candidatus Planktophila

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Planktophila lacus

characteristic: organism

text: Candidatus Planktophila lacus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Verrucomicrobia; Spartobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chthoniobacter flavus

characteristic: project name

characteristic: sample derived from

text: Chthoniobacter flavus

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Gulosibacter sp. Marseille-P7157

characteristic: organism

text: Gulosibacter sp. Marseille-P7157

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Planctomycetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Kuenenia stuttgartiensis

characteristic: project name

characteristic: sample derived from

text: Candidatus Kuenenia stuttgartiensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Flavobacterium psychrophilum

characteristic: organism

text: Flavobacterium psychrophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Ferrithrix thermotolerans DSM 19514

characteristic: project name

characteristic: sample derived from

text: Ferrithrix thermotolerans DSM 19514

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Verrucomicrobia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Akkermansia muciniphila

characteristic: organism

text: Akkermansia muciniphila

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Crenothrix polyspora

characteristic: project name

characteristic: sample derived from

text: Crenothrix polyspora

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bifidobacterium breve

characteristic: organism

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bordetella parapertussis

characteristic: organism

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Limnohabitans

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Limnohabitans sp. Rim8

characteristic: organism

text: Limnohabitans sp. Rim8

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Fibrobacteres

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Fibrobacter sp. UWT3

characteristic: project name

characteristic: sample derived from

text: Fibrobacter sp. UWT3

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Bacteria; Planctomycetes; Planctomycetia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Singulisphaera sp. GP187

characteristic: organism

text: Singulisphaera sp. GP187

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title