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characteristic: sample capture status


characteristic: External Id

text: HUG

characteristic: INSDC center name

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text: public

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

characteristic: collecting institution

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text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

text: GE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-40608236/2023

characteristic: organism

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: INSDC status

characteristic: SRA accession

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characteristic: geographic location (country and/or sea)

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/UN-HUG-40584727/2023

text: active surveillance not initiated by an outbreak


characteristic: External Id

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characteristic: ENA-CHECKLIST

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characteristic: GISAID Accession ID

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: public

text: SIB

text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Martinetti Lucchini Gladys, Valeria Spina, Gloria Gaudio

characteristic: collector name

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-42_27756085/2023

characteristic: organism

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba690ec/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: public

text: SIB

text: Universität Zürich, Zürich, Switzerland

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Annette Audigé, Guido Bloemberg, Michael Huber, Alexandra Trkola

text: Switzerland

text: ZH

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-40629008/2023

characteristic: organism

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text: restricted access

text: restricted access

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characteristic: External Id

text: HUG

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text: public

text: SIB

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text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: GE

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text: Homo sapiens

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text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-22_27757275/2023

characteristic: organism

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-SNRCI-HUG-40684980/2023

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: GISAID Accession ID

text: public

text: SIB

text: Universitäts-Kinderspital Zürich, Zürich, Switzerland

text: Switzerland

text: ZH

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characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

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text: restricted access

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text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba68f26/2023

characteristic: isolate

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characteristic: External Id

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text: public

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characteristic: collecting institution

characteristic: collection date

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text: Switzerland

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text: Human

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-40646716/2023

characteristic: organism

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text: HUG

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text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-40678258/2023


characteristic: External Id

text: HUG

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characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: GE

text: Human

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characteristic: host health state

text: Homo sapiens

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text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-40589346/2023

characteristic: isolate

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: Institute of Medical Virology, Zürich, Switzerland

text: public

text: SIB

text: Stadtspital Waid, Zürich, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Annette Audigé, Guido Bloemberg, Michael Huber, Alexandra Trkola

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6916e/2023

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Universität Zürich, Zürich, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba69113/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: HUG

text: public

text: SIB

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-40699280/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: UniversitätsSpital Zürich, Zürich, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: SZ

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SZ-UZH-IMV-3ba68f5a/2023

characteristic: organism

characteristic: title


PiburgerSee

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Further Details

text: CIRAD

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PiburgerSee

characteristic: Submitter Id

unit: m

characteristic: altitude

text: freshwater lake biome (ENVO_01000252)

characteristic: broad-scale environmental context

characteristic: depth

text: Sampling position 47.11 N 10.53 E; altitude 913 m; march 2011)

characteristic: description

text: lake water (ENVO_04000007)

characteristic: environmental medium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tyrol, Otztal, Piburger See

text: small freshwater lake biome (ENVO_00000892)

characteristic: local environmental context

text: uncultured eukaryote

text: CCAGCA[GC]C[CT]GCGGTAATTCC_ACTTTCGTTCTTGAT[CT][AG]A

characteristic: pcr primers

text: uncultured eukaryote

text: 18S SSU rRNA

characteristic: target gene

characteristic: target subfragment

text: surface water sample from PiburgerSee (Tyrol, Austria)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DPSQ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: axolotl

characteristic: common name

text: DPY30 Morphant

text: Ambystoma mexicanum

characteristic: organism

text: Ambystoma mexicanum

text: Whole Embryo Stg 10.5

characteristic: title


text: DPSQ

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: axolotl

text: DPY30 Morphant

characteristic: description

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Whole Embryo Stg 22


text: DPSQ

text: public

text: axolotl

text: Nanog Morphant

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Whole Embryo Stg 10.5


text: DPSQ

text: public

text: axolotl

text: Nanog Morphant

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Whole Embryo Stg 22


text: DPSQ

text: public

text: axolotl

text: SB413542 Inhibition

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Whole Embryo Stg 10.5


text: DPSQ

text: public

text: axolotl

text: SB413542 Inhibition

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Whole Embryo Stg 22


text: DPSQ

text: public

text: axolotl

text: Control

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Whole Embryo Stg 10.5


text: DPSQ

text: public

text: axolotl

text: Control

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Whole Embryo Stg 22


text: DPSQ

text: public

text: axolotl

text: Normal Animal Cap Explant

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: Animal Cap Explant


text: University Hospital of RWTH Aachen

text: public

tag: Namespace:University Hospital of RWTH Aachen

text: mouse gut microbiome

characteristic: broad-scale environmental context

characteristic: collection date

text: house mouse

text: 16S rRNA gene amplicon sequencing of V3-V4 region of mouse colon content; genotype:wt, treatment:AOM/DSS, HFD;microbiota: BACOMI 7alphaDH

text: colon content

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: mouse colon

characteristic: local environmental context

text: Mus musculus

text: Secondary bile acid production by gut bacteria promotes Western diet-associated colorectal cancer

characteristic: project name

text: Mus musculus

text: 16S rRNA gene amplicon sequencing of V3-V4 region on Illumina MiSeq (PE300)

characteristic: sequencing method

text: 16S rRNA gene amplicon sequencing of mouse colon content


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital of RWTH Aachen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: mouse gut microbiome

text: house mouse

characteristic: common name

text: 16S rRNA gene amplicon sequencing of V3-V4 region of mouse colon content; genotype:wt, treatment:AOM/DSS, HFD;microbiota: BACOMI 7alphaDH+

text: colon content

text: Germany

text: host-associated

text: mouse colon

text: Mus musculus

characteristic: organism

text: Mus musculus


text: University Hospital of RWTH Aachen

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: negative control

characteristic: broad-scale environmental context

characteristic: collection date

text: house mouse

text: negative control; blank extraction

characteristic: description

text: buffer

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: negative control

text: Mus musculus

text: Mus musculus

text: negative control; blank extraction

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital of RWTH Aachen

text: public

text: pig gut microbiome

text: domestic pig

text: 16S rRNA gene amplicon sequencing of V3-V4 region of pig faeces; genotype:APC1311/+, diet: RL; time: start

text: feces

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: pig stool

characteristic: local environmental context

text: Sus scrofa domesticus

characteristic: project name

text: Sus scrofa domesticus

characteristic: sequencing method

text: 16S rRNA gene amplicon sequencing of pig faeces


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital of RWTH Aachen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pig gut microbiome

text: domestic pig

characteristic: common name

text: 16S rRNA gene amplicon sequencing of V3-V4 region of pig faeces; genotype:APC1311/+, diet: CTRL; time: start

text: feces

text: Germany

text: host-associated

text: pig stool

text: Sus scrofa domesticus

characteristic: organism

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital of RWTH Aachen

text: public

characteristic: Submitter Id

text: pig gut microbiome

characteristic: broad-scale environmental context

characteristic: collection date

text: domestic pig

text: 16S rRNA gene amplicon sequencing of V3-V4 region of pig faeces; genotype:APC1311/+, diet: RL; time: end

characteristic: description

text: feces

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: pig stool

text: Sus scrofa domesticus

text: Sus scrofa domesticus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital of RWTH Aachen

text: public

text: pig gut microbiome

text: domestic pig

text: 16S rRNA gene amplicon sequencing of V3-V4 region of pig faeces; genotype:APC1311/+, diet: CTRL; time: end

text: feces

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: pig stool

characteristic: local environmental context

text: Sus scrofa domesticus

characteristic: project name

text: Sus scrofa domesticus

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital of RWTH Aachen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pig gut microbiome

text: domestic pig

characteristic: common name

text: feces

text: Germany

text: host-associated

text: pig rectum

text: Sus scrofa domesticus

characteristic: organism

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIPH

text: public

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: S. pyogenes

text: GAS routine sample

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIPH

characteristic: INSDC center name

text: public

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: jointfluid

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: NIPH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: pleural fluid

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: NIPH

text: public

characteristic: SRA accession

text: ELIXIR-Norway

text: S. pyogenes

characteristic: common name

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: Aspirate thigh

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIPH

text: public

characteristic: Submitter Id

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: Secretion (mastoiditis)

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: UCL Genetics Institute

text: public

tag: Namespace:UCL Genetics Institute

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Protocols: Right amygdalas were collected for RNA extraction. All samples were done with Qiagen lipid tissue mini kit. RNA degradation and contamination was monitored on 1% agarose gels. dUTP directional protocol

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: amygdala

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: N:HS

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL Genetics Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

unit: day

characteristic: age

text: ArrayExpress

text: Norway rat

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: amygdala

text: Rattus norvegicus

text: male

text: N:HS

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:The Azrieli Center for Stem Cells and Genetic Research, Department of Genetics, Silberman Institute of Life Sciences, The Hebrew University

text: ArrayExpress

text: neural progenitor cell

text: human

characteristic: common name

text: Protocols: Cell were washed and harvested using trypsin. MACHEREY-NAGEL GmbH & Co KG NucleoSpin® RNA Plus kit TruSeq RNA Library Prep Kit v2 (Illumina)

text: blastula stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: diploid

characteristic: ploidy

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female


text: The Azrieli Center for Stem Cells and Genetic Research, Department of Genetics, Silberman Institute of Life Sciences, The Hebrew University

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neural progenitor cell

text: human

characteristic: description

text: blastula stage

text: Homo sapiens

text: Homo sapiens

text: diploid

text: embryonic stem cell

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11430_2:3n_f10_clone_H_NPCs_day_7

text: ArrayExpress

text: neural progenitor cell

text: human

text: blastula stage

text: Homo sapiens

text: Homo sapiens

text: triploid

text: embryonic stem cell

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: neural progenitor cell

text: human

text: blastula stage

characteristic: developmental stage

text: Homo sapiens

text: Homo sapiens

text: triploid

text: embryonic stem cell

text: Homo sapiens

text: female

characteristic: title


characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11430_2:pES10_1n_dsRed-hygro_rep1

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: Homo sapiens

text: Homo sapiens

text: haploid

text: Homo sapiens

text: female


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text: Protocols: 3 rosette leaves of 5 week old plants long day conditions (16 hr light), 20 degrees Celcius CTAB Ultra™ II DNA Library Prep Kit for Illumina®

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