characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Biotodoma cupido

characteristic: organism

text: FIN

text: Biotodoma cupido

text: MALE

text: NOT COLLECTED

text: N

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Amazonas | Novo Airão | Igarapé da Freguesia

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Crenicichla notophthalmus

text: FIN

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Crenicichla notophthalmus

text: MALE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: Amazonas | Novo Airão | Igarapé Sobrado

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Biotodoma cupido

characteristic: organism

text: FIN

text: Biotodoma cupido

text: MALE

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Satanoperca lilith

text: FIN

characteristic: organism part

text: Satanoperca lilith

text: NOT COLLECTED

text: NOT COLLECTED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

text: Brazil

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Crenicichla notophthalmus

text: FIN

characteristic: project name

characteristic: sample derived from

text: Crenicichla notophthalmus

text: FEMALE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Satanoperca lilith

characteristic: organism

text: FIN

text: Satanoperca lilith

text: MALE

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Amazonas | Novo Airão | Igarapé Sobrado

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Biotodoma cupido

text: FIN

characteristic: organism part

text: Biotodoma cupido

text: FEMALE

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Satanoperca lilith

text: FIN

characteristic: project name

characteristic: sample derived from

text: Satanoperca lilith

text: FEMALE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Aequidens pallidus

characteristic: organism

text: FIN

text: Aequidens pallidus

text: FEMALE

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Amazonas | Novo Airão | Igarapé Sobrado

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Aequidens pallidus

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Aequidens pallidus

text: FEMALE

text: NOT COLLECTED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

text: Brazil

text: Minas Gerais | Rio Paranaíba | Fazenda 3 Barras

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Australoheros barbosae

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Australoheros barbosae

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: Rio do Sul | Porto Alegre | UFRGS

text: Lake

characteristic: habitat

text: JULIANA WINGERT

text: UFRGS

text: adult

text: Gymnogeophagus labiatus

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Gymnogeophagus labiatus

text: NOT COLLECTED

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Amazonas | Novo Airão | Igarapé Sobrado

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Aequidens pallidus

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Aequidens pallidus

text: MALE

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

text: Brazil

text: Amazonas | Novo Airão | Igarapé Sobrado

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Crenicichla lugubris

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Crenicichla lugubris

text: FEMALE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: Amazonas | Novo Airão | Igarapé Sobrado

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Crenicichla lugubris

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Crenicichla lugubris

text: MALE

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Australoheros barbosae

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Australoheros barbosae

text: MALE

text: NOT COLLECTED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

text: Brazil

text: Rio do Sul | Porto Alegre | UFRGS

text: Lake

text: JULIANA WINGERT

text: UFRGS

text: adult

text: Gymnogeophagus rhabdotus

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Gymnogeophagus rhabdotus

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: Amazonas | Novo Airão | Igarapé Sobrado

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Aequidens pallidus

characteristic: organism

text: FIN

characteristic: sample derived from

text: Aequidens pallidus

text: FEMALE

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Australoheros barbosae

text: FIN

characteristic: organism part

text: Australoheros barbosae

text: NOT COLLECTED

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collection date

text: Brazil

text: Rio do Sul | Porto Alegre | UFRGS

text: Lake

text: JULIANA WINGERT

text: UFRGS

text: adult

text: Gymnogeophagus labiatus

text: MUSCLE

characteristic: project name

text: Gymnogeophagus labiatus

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

characteristic: geographic location (country and/or sea)

text: Amazonas | Novo Airão | Igarapé Sobrado

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Aequidens pallidus

characteristic: organism

text: FIN

characteristic: sample derived from

text: Aequidens pallidus

text: MALE

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Amazonas | Novo Airão | Igarapé Sobrado

characteristic: geographic location (region and locality)

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

characteristic: lifestage

text: Crenicichla lugubris

text: FIN

characteristic: organism part

text: Crenicichla lugubris

text: FEMALE

text: NOT COLLECTED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

characteristic: collection date

text: Brazil

text: Amazonas | Novo Airão | Igarapé Sobrado

text: River

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Crenicichla lugubris

text: FIN

characteristic: project name

text: Crenicichla lugubris

text: MALE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

text: Brazil

characteristic: geographic location (country and/or sea)

text: River

characteristic: habitat

text: ADRIAN INDERMAUR

text: University of Basel

text: adult

text: Australoheros barbosae

characteristic: organism

text: FIN

characteristic: sample derived from

text: Australoheros barbosae

text: MALE

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MARCOS DA SILVA

text: UNIVERSITY OF BASEL

characteristic: collecting institution

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Rio do Sul | Porto Alegre | UFRGS

characteristic: geographic location (region and locality)

text: Lake

text: JULIANA WINGERT

text: UFRGS

text: adult

characteristic: lifestage

text: Gymnogeophagus rhabdotus

text: MUSCLE

characteristic: organism part

text: Gymnogeophagus rhabdotus

text: NOT COLLECTED

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:Dutch COVID-19 response team

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

text: Zuid-Holland

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: Throat/Nasal

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: Lysis

characteristic: organism

characteristic: title


text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Zeeland

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Lysis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: Lysis

characteristic: isolation source host-associated

characteristic: sample capture status


text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

text: not provided

text: restricted access

text: Throat/Nasal

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Utrecht

text: Human

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Throat/Nasal


text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Curacao

text: Curacao

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: Throat/Nasal

characteristic: isolation source host-associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Gelderland

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

text: not provided

text: restricted access

text: Throat/Nasal

characteristic: organism

characteristic: title


text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Noord-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Throat/Nasal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

text: metagenome

text: metagenome


text: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: University of Wisconsin - Madison

text: public

tag: Namespace:University of Wisconsin - Madison

text: house mouse

characteristic: common name

text: DonB-FF

characteristic: description

text: FF

characteristic: diet

text: DonB

characteristic: donor

text: Mus musculus

text: Mus musculus

text: Female

characteristic: sex

text: ApoE-/-

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Wisconsin - Madison

text: public

text: house mouse

text: DonA-FF

text: FF

text: DonA

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Wisconsin - Madison

text: public

text: house mouse

text: DonB-CC

text: CC

text: DonB

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-


text: University of Wisconsin - Madison

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: DonC-FF

text: FF

text: DonC

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-


text: University of Wisconsin - Madison

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: house mouse

text: DonC-CC

text: CC

text: DonC

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-


text: University of Wisconsin - Madison

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: DonA-CC

text: CC

text: DonA

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-


text: public

tag: Namespace:School of Biological Sciences, NTU, Singapore

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stiff brome

characteristic: cultivar

text: Protocols: Sample collection was performed by Dr. Richard Poire, ANU Plant organ samples were frozen in liquid nitrogen and stored in -80C before grinding with liquid nitrogen and extraction 100mg of samples with Sigma Spectrum Plant Total RNA kit. Four B. distachyon Bd21-3 seeds were sowed in the soil and vernalized for 5 days in the 4℃ cold room. After vernalization, the seeds were grown at 25℃, 50% relative humidity, 100 μE*m-2*s-1 light intensity, and with a day/night cycle of 24/0 hours B. distachyon Bd21-3 seedlings were divided into an acclimated group and a non-acclimated group respectively after 21 days from vernalization. Before a 1-day 39℃ heat stress treatment, the acclimated group went through a 1-day 39℃ heat priming and a 2-day recovery, while the non-acclimated group kept at normal temperature for 3 days. In each group, leaves of 3 biological replicates at 10 important time points were cut and immediately stored in a -80℃ freezer. N/A RNA extraction performed with Sigma Spectrum Plant Total RNA kit Directional mRNA library preparation (poly A enrichment)

text: wild type genotype

characteristic: genotype

text: Brachypodium distachyon

characteristic: organism

text: Brachypodium distachyon

text: leaf

characteristic: organism part

text: Brachypodium distachyon

unit: Celsius

characteristic: temperature

unit: minute

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: School of Biological Sciences, NTU, Singapore

text: public

text: ArrayExpress

text: stiff brome

characteristic: common name

characteristic: description

text: wild type genotype

text: Brachypodium distachyon

text: Brachypodium distachyon

text: leaf

text: Brachypodium distachyon


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: stiff brome

text: warm/hot temperature regimen

characteristic: environmental stress

text: wild type genotype

text: Brachypodium distachyon

text: Brachypodium distachyon

text: leaf

text: Brachypodium distachyon


text: King's College London

text: public

characteristic: SRA accession

tag: Namespace:King's College London

characteristic: Submitter Id

text: P. gingivalis W50 grown in limited hemin (0.2 mg/L)

text: Porphyromonas gingivalis W50

text: Porphyromonas gingivalis W50

text: Limited hemin sample 1


text: King's College London

text: public

text: Porphyromonas gingivalis W50

characteristic: organism

text: Porphyromonas gingivalis W50

text: Limited hemin sample 2


text: King's College London

text: public

text: Porphyromonas gingivalis W50

text: Porphyromonas gingivalis W50

text: Limited hemin sample 3


text: King's College London

text: public

text: P. gingivalis W50 grown in excess hemin (5 mg/L)

text: Porphyromonas gingivalis W50

text: Porphyromonas gingivalis W50

text: Excess hemin sample 1


text: King's College London

text: public

text: Porphyromonas gingivalis W50

text: Porphyromonas gingivalis W50

text: Excess hemin sample 2


text: King's College London

text: public

text: Porphyromonas gingivalis W50

text: Porphyromonas gingivalis W50

text: Excess hemin sample 3


text: Laboratory of Microbiology, UZ Brussel

text: public

tag: Namespace:Laboratory of Microbiology, UZ Brussel

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: F. Crombe, UZ Brussel

text: Whole genome sequencing data uploaded by EnteroBase user

text: Belgium

characteristic: geographic location

text: Human

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

text: University of Wisconsin - Madison

text: public

text: human

text: Donor

characteristic: diet

text: DonB

characteristic: donor

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Wisconsin - Madison

text: public

text: human

characteristic: common name

characteristic: description

text: Donor

text: DonA

text: Homo sapiens

text: Homo sapiens

text: feces


characteristic: External Id

text: University of Wisconsin - Madison

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: CC-bound

text: DonB

text: Mus musculus

text: Mus musculus

text: Female

characteristic: sex

text: ApoE-/-

text: feces


text: University of Wisconsin - Madison

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: FF-bound

text: DonB

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Female

text: ApoE-/-

text: feces


characteristic: ENA-CHECKLIST

text: University of Wisconsin - Madison

text: public

text: house mouse

text: FF-bound

text: DonA

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-

characteristic: strain

text: feces


text: University of Wisconsin - Madison

text: public

text: house mouse

text: FF-bound

characteristic: diet

text: DonC

characteristic: donor

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-

text: feces


characteristic: ENA-FIRST-PUBLIC

text: University of Wisconsin - Madison

text: public

text: house mouse

text: CC-bound

text: DonA

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-

text: feces

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Wisconsin - Madison

text: public

text: house mouse

characteristic: common name

text: CC-bound

text: DonC

text: Mus musculus

text: Mus musculus

text: Female

text: ApoE-/-

text: feces


characteristic: External Id

text: University of Wisconsin - Madison

text: public

text: human

characteristic: description

text: Donor

text: DonC

text: Homo sapiens

text: Homo sapiens

text: feces


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:INSTITUT PASTEUR

text: Animal

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2022/01186


text: INSTITUT PASTEUR

characteristic: INSDC last update

text: public

text: Animal

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2022/01187


text: UCBL

text: public

characteristic: INSDC status

text: Sequencing on MinION : MIN-101B | kit :SQK-LSK109 | flowcell : Minion_R9 (FLO-MIN106D)

text: Proasellus coiffaiti

text: Proasellus coiffaiti

text: DNA for genome sequencing of Proasellus coiffaiti


text: UCBL

text: public

characteristic: SRA accession

text: Sequencing on MinION : MIN-101B | kit :SQK-LSK110 | flowcell : Minion_R10.3 (FLO-MIN111)

text: Proasellus coiffaiti

text: Proasellus coiffaiti


text: UCBL

text: public

characteristic: Submitter Id

text: Sequencing on MinION : MIN-101B | kit :SQK-LSK110 | flowcell : Minion_R9.4.1 (MIN106D)

text: Proasellus coiffaiti

text: Proasellus coiffaiti


text: UCBL

text: public

text: Sequencing on MinION : MIN-101B | kit :SQK-LSK112 | flowcell : Minion_R10.4 (FLO-MIN112)

text: Proasellus coiffaiti

characteristic: organism

text: Proasellus coiffaiti


characteristic: ENA-CHECKLIST

text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:The First Affiliated Hospital, Zheng Zhou University.

text: human metagenome

text: metagenome

characteristic: organism

text: metagenome

text: human metagenome


text: The First Affiliated Hospital, Zheng Zhou University.

text: public

text: human metagenome

text: metagenome

text: metagenome

text: human metagenome


E-MTAB-12770:Sample 1

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 1

tag: Namespace:University of Liverpool

characteristic: age

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

characteristic: common name

text: Protocols: Cell Cultures Primary chondrifying micromass cell cultures (high density cultures, HDCs) were used as an in vitro experimental model for hyaline cartilage formation. LMP cells in HDCs first proliferate and then differentiate into matrix-producing chondroblasts during the first 3 days of culture, and a well-detectable hyaline cartilage-specific metachromatic ECM was formed on the 6th day of culture, which became even more abundant by day 15. HDCs were established as previously described.. Briefly, chondroprogenitor cells were isolated from the developing limb buds of chicken embryos at Hamburger-Hamilton stages 22-24. The in vitro work on early-stage (4.5-day-old) chicken embryos does not require approval from the Ethics Committee of the University of Debrecen. To obtain a sufficiently high yield of primary chondrogenic cells, the limb buds of ~100 embryos were collected for each experiment. Distal parts of the fore and hind limb buds of embryos were pooled and dissociated in 0.25% trypsin-EDTA (Sigma-Aldrich, Merck, St. Louis, MO, USA; pH 7.4) at 37 °C for 1 h. The digestion of limb buds was terminated by the addition of an equal volume of foetal bovine serum (FBS; Gibco, Thermo Fisher Scientific, Gaithersburg, MD, USA). Single-cell suspensions of chondrogenic LMP cells were obtained by filtering through a 20-μm pore size plastic filter (Millipore, Merck, Billerica, MA, USA). After centrifugation of the suspension at 800 × g for 10 min at room temperature, cells were resuspended in Ham’s F12 culture medium (Euroclone, Pero, Italy) supplemented with 10% FBS at a concentration of 1.5 × 107 cells/mL. Droplets of various numbers (100 µL; 12-12 droplets for days 0 & 1; 10 droplets for day 2; 8-8 droplets for days 3 & 4; and 6-6 droplets for the remaining days) were inoculated into 150-mm Petri dishes (Eppendorf, Hamburg, Germany) and the cells were allowed to attach to the surface for 2 hours in a CO2 incubator (5% CO2 and 90% humidity). Finally, 1.5 mL of Ham’s F12 supplemented with 10% FBS, 0.5 mM L-glutamine, and 1% penicillin/streptomycin (TEVA, Debrecen, Hungary) was added to the colonies. The day of inoculation was considered as day 0 of culturing. Cultures were maintained at 37 °C in a CO2 incubator for 1, 2, 3, 4, 6, 10, or 15 days. Cultures designated “day 0” were kept in the incubator for 2 hours after being flooded with F12 medium, and then harvested. The culture medium was changed every two days. Articular Cartilage Shavings Full depth articular cartilage shavings were harvested from knee joints of 35-day-old broilers as described in detail elsewhere. Shavings were minced into small chips (~1-2 mm3) using sterile scalpels and 100 mg of cartilage chips were subjected to enzymatic digestion by 1.2% collagenase type II (Merck) in DMEM overnight at 37°C. On the designated days of culturing, HDCs were washed twice with physiological NaCl and then stored at -80 °C. Chondrocytes obtained from collagenase type II digested articular cartilage were collected using centrifugation at 5,000×g at 4°C for 10 minutes). For total RNA isolation, the micromass cultures and pelleted articular chondrocytes were dissolved in TRI Reagent (Applied Biosystems, Foster City, CA, USA). Samples were mixed with 20% chloroform and centrifuged at 4 °C at 10,000 × g for 20 min. After incubation at −20 °C for 1 h in 500 μL of RNase-free isopropanol, the pellet of total RNA was dissolved in RNase-free water (Promega, Madison, WI, USA) and stored at −80 °C. RNASeq libraries were prepared from total RNA using the Ultra II RNA Sample Prep Kit (New England BioLabs, Ipswitch, MA, USA) according to the manufacturer’s protocol. Briefly, poly-A RNAs were captured with oligo-dT conjugated magnetic beads then the mRNAs were eluted and fragmented at 94 °C. First-strand cDNA was generated by random priming

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

characteristic: organism part

text: Gallus gallus

text: Sample 1


E-MTAB-12770:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Liverpool

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12770:Sample 10

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 10


E-MTAB-12770:Sample 11

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 11

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chondroprogenitor cell

text: chicken

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 11

characteristic: title


E-MTAB-12770:Sample 12

characteristic: ENA-CHECKLIST

text: University of Liverpool

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12770:Sample 12

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 12


E-MTAB-12770:Sample 13

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 13

characteristic: age

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

characteristic: common name

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 13


E-MTAB-12770:Sample 14

characteristic: ENA-FIRST-PUBLIC

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 14

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

characteristic: organism part

text: Gallus gallus

text: Sample 14


E-MTAB-12770:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Liverpool

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12770:Sample 15

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 15


E-MTAB-12770:Sample 16

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 16

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chondroprogenitor cell

text: chicken

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 16

characteristic: title


E-MTAB-12770:Sample 17

characteristic: ENA-CHECKLIST

text: University of Liverpool

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12770:Sample 17

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 17


E-MTAB-12770:Sample 18

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 18

characteristic: age

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

characteristic: common name

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 18


E-MTAB-12770:Sample 19

characteristic: ENA-FIRST-PUBLIC

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 19

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

characteristic: organism part

text: Gallus gallus

text: Sample 19


E-MTAB-12770:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Liverpool

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12770:Sample 2

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 2


E-MTAB-12770:Sample 20

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 20

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chondroprogenitor cell

text: chicken

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 20

characteristic: title


E-MTAB-12770:Sample 21

characteristic: ENA-CHECKLIST

text: University of Liverpool

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12770:Sample 21

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 21


E-MTAB-12770:Sample 22

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 22

characteristic: age

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

characteristic: common name

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 22


E-MTAB-12770:Sample 23

characteristic: ENA-FIRST-PUBLIC

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 23

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

characteristic: organism part

text: Gallus gallus

text: Sample 23


E-MTAB-12770:Sample 24

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Liverpool

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12770:Sample 24

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 24


E-MTAB-12770:Sample 25

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 25

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chondroprogenitor cell

text: chicken

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: knee joint

text: Gallus gallus

text: Sample 25

characteristic: title


E-MTAB-12770:Sample 26

characteristic: ENA-CHECKLIST

text: University of Liverpool

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12770:Sample 26

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: adult

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: knee joint

text: Gallus gallus

text: Sample 26


E-MTAB-12770:Sample 27

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 27

characteristic: age

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: knee joint

text: Gallus gallus

text: Sample 27


E-MTAB-12770:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 3

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

characteristic: organism part

text: Gallus gallus

text: Sample 3


E-MTAB-12770:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Liverpool

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12770:Sample 4

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 4


E-MTAB-12770:Sample 5

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chondroprogenitor cell

text: chicken

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 5

characteristic: title


E-MTAB-12770:Sample 6

characteristic: ENA-CHECKLIST

text: University of Liverpool

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12770:Sample 6

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 6


E-MTAB-12770:Sample 7

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 7

characteristic: age

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

characteristic: common name

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 7


E-MTAB-12770:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: University of Liverpool

text: public

text: E-MTAB-12770:Sample 8

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

characteristic: organism part

text: Gallus gallus

text: Sample 8


E-MTAB-12770:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Liverpool

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12770:Sample 9

text: ArrayExpress

text: chondroprogenitor cell

text: chicken

text: embryo

text: normal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: limb bud

text: Gallus gallus

text: Sample 9


text: public

tag: Namespace:Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM), Shanghai0, China, 20001.

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: B cell

text: house mouse

text: Protocols: Splenic B cells from Pbx1-Ctrl and Pbx1-CKO mice stimulated with anti-IgM (10ug/mL) for 6h were harvested. Total RNA was extracted using TRIzol reagent (15596018, Thermo Fisher) Total RNA was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations.

characteristic: description

text: normal

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM), Shanghai0, China, 20001.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: B cell

text: house mouse

text: normal

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: B cell

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus


text: Cornell University

text: public

characteristic: Sample same as

tag: Namespace:Cornell University

text: not collected

text: Sample from voucher specimen stored in the herbarium of the CNGB

text: China

characteristic: geographic location (country and/or sea)

text: Euphorbia tirucalli

text: soil

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: Euphorbia tirucalli

characteristic: source material identifiers


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBE-UPF

characteristic: INSDC center name

text: public

characteristic: LibraryID

characteristic: OldSampleID

characteristic: SRA accession

characteristic: Submitter Id

text: western lowland gorilla

text: Gorilla single hair

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla

text: Hair


characteristic: ENA-CHECKLIST

text: IBE-UPF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Cross River gorilla

text: Gorilla single hair

characteristic: description

text: Gorilla gorilla diehli

text: Gorilla gorilla diehli

text: Hair

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: IBE-UPF

text: public

characteristic: INSDC status

text: eastern lowland gorilla

characteristic: common name

text: Gorilla single hair

text: Gorilla beringei graueri

characteristic: organism

text: Gorilla beringei graueri

text: Hair


text: IBE-UPF

text: public

text: Gorilla single hair

text: Pan troglodytes ellioti

text: Pan troglodytes ellioti

text: Hair


text: Cornell University

text: public

characteristic: Sample same as

text: not collected

text: China

characteristic: geographic location (country and/or sea)

text: Euphorbia schlechtendalii

text: soil

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: Euphorbia schlechtendalii

characteristic: source material identifiers


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: public

text: not collected

text: China

text: Triadica sebifera

text: soil

text: leaves

text: Triadica sebifera


characteristic: ENA-CHECKLIST

text: Cornell University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

text: China

text: Mallotus japonicus

text: soil

text: leaves

text: Mallotus japonicus


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

characteristic: description

text: China

text: Macaranga tanarius

text: soil

text: leaves

text: Macaranga tanarius


characteristic: ENA-FIRST-PUBLIC

text: Cornell University

text: public

characteristic: INSDC status

text: not collected

text: China

text: Mallotus repandus

text: soil

text: leaves

text: Mallotus repandus

characteristic: title


text: Cornell University

text: public

characteristic: Sample same as

text: not collected

text: China

text: Croton laevigatus

characteristic: organism

text: soil

text: leaves

text: Croton laevigatus


text: Cornell University

text: public

text: not collected

text: China

characteristic: geographic location (country and/or sea)

text: Vernicia montana

text: soil

characteristic: plant growth medium

text: leaves

text: Vernicia montana


text: Cornell University

text: public

text: not collected

text: China

text: Balakata baccata

text: soil

text: leaves

characteristic: plant structure

text: Balakata baccata

characteristic: source material identifiers


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:RIVM - National Institute for Public Health and the Environment

text: Netherlands

characteristic: country

text: Layers

characteristic: host

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-CHECKLIST

text: RIVM - National Institute for Public Health and the Environment

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Netherlands

text: Layers

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Netherlands

text: No

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: public

text: Netherlands

text: Human

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Derby


text: public

text: Netherlands

text: Human

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: UNIVERSITY OF GENEVA

text: public

tag: Namespace:UNIVERSITY OF GENEVA

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989816 of study ERP022980.

characteristic: description

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Microbiota of caloric restricted mice by WMGS

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00015_1678865615


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989817 of study ERP022980.

text: Cecum

text: Switzerland

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Christensenellaceae bacterium

characteristic: organism

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00050_1678865625

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989821 of study ERP022980.

characteristic: description

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00129_1678865627


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: Cecum

text: Switzerland

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00141_1678865629

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989810 of study ERP022980.

characteristic: description

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00234_1678865633


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12641940 of study SRP278569.

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

characteristic: organism

text: Metagenomic data of mice

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00360_1678865634

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506348 of study SRP278569.

characteristic: description

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00415_1678865636


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506343 of study SRP278569.

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00498_1678865640

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: Host-associated

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989791 of study ERP022980.

characteristic: description

text: Feces

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG21440_1678865645


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989803 of study ERP022980.

text: Feces

text: Switzerland

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Microbiota of caloric restricted mice by WMGS

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG21719_1678865646

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989804 of study ERP022980.

characteristic: description

text: Feces

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG21735_1678865649


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: Feces

text: Switzerland

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG21750_1678865650

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1989806 of study ERP022980.

characteristic: description

text: Feces

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG21800_1678865653


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506345 of study SRP278569.

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG21834_1678865657

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG21846_1678865660


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Christensenellaceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG21856_1678865663

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506344 of study SRP278569.

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillibacter sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillibacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG21882_1678865665


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506355 of study SRP278569.

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG21940_1678865667

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506352 of study SRP278569.

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG21978_1678865669


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506351 of study SRP278569.

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG22013_1678865671

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG22019_1678865673


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG22022_1678865675

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506350 of study SRP278569.

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Flavonifractor sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Flavonifractor sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG22048_1678865677


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506349 of study SRP278569.

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Bilophila sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Bilophila sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG22091_1678865679

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG22110_1678865680


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Dorea sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Dorea sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG22113_1678865685

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506363 of study SRP278569.

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG22148_1678865687


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506362 of study SRP278569.

text: Feces

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG22166_1678865689

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG22176_1678865691