characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 17 Sample 3


status: PUBLIC

unit: mg/l

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

unit: h

text: Lund University

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Lund University

characteristic: Submitter Id

text: wastewater treatment plant (ENVO:00002043)

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

unit: DD

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

text: Partial nitritation anammox biofilm colonization

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

unit: ºC

characteristic: temperature

text: Day 22 Sample 1

characteristic: title


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 22 Sample 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 22 Sample 3


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 37 Sample 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 37 Sample 2


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 37 Sample 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 51 Sample 1

characteristic: title


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 51 Sample 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 51 Sample 3


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 63 Sample 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 63 Sample 2


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 63 Sample 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 78 Sample 1

characteristic: title


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 78 Sample 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 78 Sample 3


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 92 Sample 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 92 Sample 2


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 92 Sample 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 107 Sample 1

characteristic: title


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 107 Sample 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 107 Sample 3


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 120 Sample 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 120 Sample 2


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 120 Sample 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 134 Sample 1

characteristic: title


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 134 Sample 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 134 Sample 3


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 148 Sample 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 148 Sample 2


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 148 Sample 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 162 Sample 1

characteristic: title


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 162 Sample 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 162 Sample 3


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

text: Sweden

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

characteristic: local environmental context

text: biofilm metagenome

characteristic: organism

characteristic: project name

text: Sidestream PNA MBBR

characteristic: reactor type

text: biofilm metagenome

characteristic: temperature

text: Day 175 Sample 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Biofilm from an MBBR carrier

text: waste water (ENVO:00002001)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Klagshman WWTP

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 175 Sample 2


characteristic: DO

characteristic: HRT

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Biofilm from an MBBR carrier

characteristic: description

text: waste water (ENVO:00002001)

text: Sweden

characteristic: geographic location (longitude)

text: Klagshman WWTP

characteristic: geographic location (region and locality)

text: biofilm (ENVO_00002034)

text: biofilm metagenome

text: Sidestream PNA MBBR

text: biofilm metagenome

text: Day 175 Sample 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: France

text: ceftriaxone

characteristic: group

text: stool

characteristic: host body product

text: human-gut

characteristic: host body site

characteristic: individual

text: human gut metagenome

characteristic: organism

text: human gut metagenome

characteristic: time

text: human gut metagenome

characteristic: title


text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: France

characteristic: geographic location (country and/or sea)

text: cefotaxime

text: stool

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: human gut metagenome


text: Liverpool John Moores University

text: public

characteristic: SRA accession

tag: Namespace:Liverpool John Moores University

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample buried in Balintore, Scotland

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Liverpool John Moores University

text: public

text: human

text: Sample buried in Lundin Link, Scotland

text: Homo sapiens

text: Homo sapiens


text: Philipps University Marburg

text: public

tag: Namespace:Philipps University Marburg

text: ArrayExpress

characteristic: broker name

text: monocyte derived macrophage - M1 like

text: human

text: Protocols: Protocol ascTAM isolation: • Ascites were collected from patients with ovarian carcinoma undergoing primary surgery at the University Hospital in Marburg. • approval of collection and analysis of human material by the ethics committee at Philipps University (reference number 205/10) • ascTAM were isolated from ascites by a combination of density gradient centrifugation, filtration using 30μm and 100μm cell strainer, followed by magnetic cell sorting (MACS; Miltenyi Biotec, Bergisch Gladbach, Germany) • Cell populations with a purity of >95% CD45+ cells, as determined by flow cytometry, were cryopreserved for subsequent functional assays, Protocol CAF isolation and culture:• omental tissue with metastasis was collected from patients with ovarian carcinoma undergoing primary surgery at the University Hospital in Marburg • Omental CAF were separated from omental tumor tissue by trypsin digestion (2 h at 37°C) with following treatment with a mixture of 18.5 U/ml collagenase and 2.5 μg/ml hyaluronidase (Sigma Aldrich) in fibroblast culture medium (DMEM/HAMs F12 (1:1), 10 % FCS, 10 ng/ml EGF, 1 % Pen/Strep) overnight at 37°C • disgested tissue was filtered through a 100 μm mesh and washed • CAF enriched fraction was precultured in fibroblast culture medium • if necessary MACS depletion of CD45+ and EpCAM+ cells / positive selection via anti- fibroblast beads (Miltenyi Biotec) was performed • for functional assays pure CAF were cultured for a maximum of three passages in OCMI/50%Ascites. Protocol: Flow cytometric analysis of cell phenotypes: • Characterization of cells (ascTAM, CAF, M1-MDM, asc-MDM) by flow cytometry on a FACS Canto II instrument using Diva Software (BD Biosciences) and analysis by FlowJo™ v10.8 Software (BD Life Sciences) • ascTAM and MDM were identified with anti-human CD14-FITC (Miltenyi Biotech) • CAF were identified by negative staining with anti-EpCAM-Vioblue and anti-CD45-FITC • further discrimination of CAF: via fibroblast markers anti-human CD140a-PE (eBioscience/Thermo Fisher Scientific) and FAP-PE (R&D Systems/Thermo Fisher Scientific) in combination with anti-human mesothelin-APC (R&D Systems) and intracellular staining with anti-human cytokeratin-APC and anti-human imentin-FITC (both from Miltenyi Biotec). M1-MDM cells are differentiated in vitro. Protocol: Differentiation of monocyte-derived macrophages (MDM) from healthy donors • Leucoreduction system chambers from healthy adult volunteers, provided by the Center for Transfusion Medicine and Hemotherapy at the University Hospital Gießen and Marburg • Monocytes were isolated by Ficoll density gradient centrifugation and following purification by adherence selection or via CD14+ MACS microbeads • Differentiation of monocytes: ◦ Approximately 3x106 monocytes per 6-well ◦ culture for 7 days prior to treatment and RNA collection ◦ TAM-like asc-MDM: in cell-free ascites pool derived from 10 patients ◦ m1-MDM: differentiation in RPMI1640 (Life Technologies, Darmstadt, Germany) supplemented with 5% human AB serum (Sigma Aldrich), 1% sodium pyruvate (Sigma Aldrich), and 100 ng/ml granulocyte macrophage colony-stimulating factor (CSF) (Peprotech, Hamburg, Germany) for 5 days followed by activation with 100 ng/ml LPS (Sigma Aldrich) and 20 ng/ml IFNγ (Biozol, Echingen, Germany) for 2 days PBMCs were thawed and cultivated for 7 days in RPMI (5 %AB-Serum, 1 % Sodium-Pyruvat. 100 ng/mL GM-CSF were added on day 0 (until day 7), 100 ng/mL LPS and 20 ng/mL IFNj were added on day 5 (until day 7). Half renew of media was performed on day 5. Format: 6 well, 4 x 10^6 cells On day 7 media was changed to serum free media (RPMI/1 % So.-Py.)for 24 h. cells were treated with 1 μM MRE for 5 h. RNA was isolated with NucleoSpin® RNA II kit purchased from Macherey Nagel. RNA was eluted in 30 μL water. DNAse digestion was performed with DNA-freeTM DNA Removal kit purchased from Thermo Fischer Scientifi Lexogen Quantseq

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: normal tissue

characteristic: sampling site

text: Homo sapiens


text: Philipps University Marburg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: tumor associated macrophage - TAM like

text: human

text: adult

text: high grade ovarian serous adenocarcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ascitic fluid

text: neoplasm

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


text: Philipps University Marburg

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: cancer associated fibroblast

text: human

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: ascitic fluid

text: neoplasm

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIAB

text: public

characteristic: collection date

text: fava bean

text: susceptible, inoculated

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: number of replicons

text: Vicia faba

text: faba bean

characteristic: organism common name

text: LP.02 two leaves visible stage

characteristic: plant developmental stage

text: horticultural compost

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: early chocolate spot symptoms

characteristic: sample disease stage

text: diseased

characteristic: sample health state

text: Vicia faba

characteristic: source material identifiers

text: inbred line

characteristic: subspecific genetic lineage rank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIAB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: fava bean

characteristic: common name

text: susceptible, control

characteristic: description

text: United Kingdom

text: growth chamber

text: Vicia faba

characteristic: organism

text: faba bean

text: LP.02 two leaves visible stage

text: horticultural compost

text: leaf

text: diploid

text: sexual

text: healthy

text: healthy

text: Vicia faba

text: inbred line

characteristic: title


text: NIAB

text: public

characteristic: collection date

text: fava bean

text: resistant, inoculated

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: number of replicons

text: Vicia faba

text: faba bean

characteristic: organism common name

text: LP.02 two leaves visible stage

characteristic: plant developmental stage

text: horticultural compost

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: early chocolate spot symptoms

characteristic: sample disease stage

text: diseased

characteristic: sample health state

text: Vicia faba

text: inbred line


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIAB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: fava bean

characteristic: common name

text: resistant, control

characteristic: description

text: United Kingdom

text: growth chamber

text: Vicia faba

text: faba bean

text: LP.02 two leaves visible stage

text: horticultural compost

text: leaf

text: diploid

text: sexual

text: healthy

text: healthy

text: Vicia faba

characteristic: source material identifiers

text: inbred line

characteristic: subspecific genetic lineage rank


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31354

tag: Namespace:UK Health Security Agency

characteristic: collection date

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: M22 240150

characteristic: isolate

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31355

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240131

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31356

characteristic: Submitter Id

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240106

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31357

characteristic: collection date

text: Invasive isolate

characteristic: description

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240123

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31358

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: M21 240221

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31359

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: M22 240021

characteristic: isolate

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31360

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240141

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31361

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240127

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31362

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240050

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31363

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240108

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31364

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240139

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31365

characteristic: Submitter Id

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240004

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:822-31366

characteristic: collection date

text: Invasive isolate

characteristic: description

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240046

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31367

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: M22 240138

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31368

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: M22 240119

characteristic: isolate

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31369

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240136

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31370

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240107

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31371

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240117

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31372

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240034

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31373

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240134

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31374

characteristic: Submitter Id

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240113

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:868-31375

characteristic: collection date

text: Invasive isolate

characteristic: description

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240146

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31376

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: M22 240116

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31377

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: M22 240110

characteristic: isolate

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31378

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240125

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31379

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240152

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31380

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240151

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31381

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240100

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31382

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240092

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31383

characteristic: Submitter Id

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240094

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31384

characteristic: collection date

text: Invasive isolate

characteristic: description

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240091

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31385

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: M22 240101

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31386

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: M22 240160

characteristic: isolate

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31387

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240093

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31388

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240159

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31389

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240087

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31390

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240161

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31391

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:869-31392

characteristic: Submitter Id

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31393

characteristic: collection date

text: Invasive isolate

characteristic: description

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31394

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31395

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31396

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31397

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31398

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31399

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31400

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31401

characteristic: Submitter Id

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M21 240004

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31402

characteristic: collection date

text: Invasive isolate

characteristic: description

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31403

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31404

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31405

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31406

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31407

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240128

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31408

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31409

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240129

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31410

characteristic: Submitter Id

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:870-31411

characteristic: collection date

text: Invasive isolate

characteristic: description

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:871-31412

text: Invasive isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:871-31413

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:871-31414

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:871-31415

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UK Health Security Agency

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:871-31416

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:871-31417

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UK Health Security Agency

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2022-10:23:27:871-31418

text: Invasive isolate

text: United Kingdom

text: diseased

text: Homo sapiens

text: M22 240090

text: invasive

text: Neisseria meningitidis

text: Neisseria meningitidis


text: public

characteristic: SRA accession

tag: Namespace:Department of Agriculture, Food, Environment and Forestry (DAGRI) - University of Florence

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Dress

characteristic: cultivar

text: Protocols: 10 plants of Photinia x fraseri Dress were planted in pots using commercial soils collected from two different areas of Altopascio (Lucca, Tuscany, Italy). 5 plants were cultivated in a rural area (named \R\) sparsely inhabited, with significant lower levels of PM (control) compared to 5 plants exposed to higher levels of PM (named \T\; “traffic”, close to a traffic light with a high number of moving cars). Plants were irrigated weekly and routinely inspected to determine any eventual symptoms of biotic and abiotic stresses. Plants remain healthy during the three months of the experimental trial. Healthy, fully-expanded, green leaves were sampled from the 5 plants from each zone at the time of planting (T0; 15th March 2021) and three months after planting (T1; 15th June 2021). Leaves were immediately frozen in liquid nitrogen and stored at -80 °C until RNA extraction. Plants have a height of around 1.5 meters and were bought in the same plant nursery to reduce plants' physiological and agronomic variability at the beginning of the trial. Frozen leaves were grounded in liquid nitrogen and a CTAB-modified protocol was used (Doyle & Doyle, 1987) to extract RNA from the tissue powder. The RNAs were eluted in 130 µL of nuclease-free water, treated with DNaseI (NEB) and purified using specific silica-based columns (Monarch RNA Cleanup kit - NEB). Qualitative and quantitative check of the nucleic acid extracted were performed through Agilent 2100 Bioanalyzer (kit RNA nano - Agilent Technologies) and Qubit™ 4 Fluorometer (kit RNA BR - Thermo Fisher Scientific) respectively. Each sample was converted into sequencing libraries following the procedure of Stranded mRNA Library Prep (Illumina) and a combination of exclusive unique dual index. The concentration of each of the libraries was determined using Qubit™ 4 Fluorometer (dsDNA High Sensitivity Kit -Invitrogen).

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: rural environment (not polluted)

characteristic: growth condition

text: Photinia x fraseri

text: Photinia x fraseri

text: leaf

characteristic: organism part

text: Photinia x fraseri


characteristic: ENA-CHECKLIST

text: Department of Agriculture, Food, Environment and Forestry (DAGRI) - University of Florence

text: public

text: ArrayExpress

text: Dress

characteristic: description

text: adult

text: wild type genotype

text: rural environment (not polluted)

text: Photinia x fraseri

characteristic: organism

text: Photinia x fraseri

text: leaf

text: Photinia x fraseri

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Dress

text: adult

text: wild type genotype

text: traffic (polluted)

text: Photinia x fraseri

text: Photinia x fraseri

text: leaf

text: Photinia x fraseri


text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360661 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360661_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358602 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR9358602_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360683 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360683_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358533 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358533_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360684 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360684_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360680 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9360680_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360657 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360657_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358613 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Pseudomonas sp.

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358613_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360717 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360717_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360664 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9360664_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360679 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360679_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358595 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Pseudomonas sp.

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

text: multi-marker approach

text: Binned metagenome: ERR9358595_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358598 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358598_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358625 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358625_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358569 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358569_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360703 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9360703_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358530 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358530_bin.2_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358562 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa

text: multi-marker approach

text: Binned metagenome: ERR9358562_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358554 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358554_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358510 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Pseudomonas sp.

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

text: multi-marker approach

text: Binned metagenome: ERR9358510_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358579 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358579_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358610 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358610_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358573 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358573_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358583 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR9358583_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358583_bin.2_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358608 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358608_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358604 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358604_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358521 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358521_bin.1_MetaWRAP_v1.3_bin

characteristic: title