characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Angelakisella sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Angelakisella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00504_1676042885

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

tag: Namespace:UNIVERSITY OF GENEVA

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run SRR12506343 of study SRP278569.

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

unit: DD

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriaceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacteriaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00505_1676042887


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00507_1676042890

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00508_1676042892


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

text: This sample represents a binned metagenome assembled from the metagenomic run SRR12506342 of study SRP278569.

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Porphyromonadaceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Porphyromonadaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00509_1676042894

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00510_1676042896


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00511_1676042897

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillibacter sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillibacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00512_1676042899


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00513_1676042901

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00514_1676042903


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00515_1676042905

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Muribaculum intestinale

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: Muribaculum intestinale

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00517_1676042907


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00518_1676042907

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00519_1676042910


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00520_1676042913

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00521_1676042916


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00522_1676042918

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00523_1676042921


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00524_1676042924

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00525_1676042926


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Eubacteriales bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Eubacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00526_1676042928

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00527_1676042934


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00529_1676042936

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00530_1676042938


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

text: This sample represents a binned metagenome assembled from the metagenomic run SRR12641939 of study SRP278569.

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Clostridiaceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Clostridiaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00531_1676042940

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00532_1676042943


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00534_1676042946

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00535_1676042948


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00536_1676042952

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Anaerotruncus sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerotruncus sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00537_1676042954


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Odoribacter sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Odoribacter sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00538_1676042956

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00539_1676042957


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00540_1676042959

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00542_1676042963


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00543_1676042964

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00544_1676042966


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Roseburia sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Roseburia sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00545_1676042969

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Prevotella sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Prevotella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00546_1676042970


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Bilophila sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Bilophila sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00547_1676042971

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00548_1676042973


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00549_1676042975

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenellaceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00550_1676042977


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: Switzerland

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00552_1676042979

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run SRR12506357 of study SRP278569.

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Anaeroplasmataceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Anaeroplasmataceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00593_1676043050


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

characteristic: organism

text: Metagenomic data of mice

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00594_1676043052

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00595_1676043054


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Odoribacter sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Odoribacter sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00596_1676043056

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Prevotella sp.

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Prevotella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00597_1676043057


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

text: Metagenomic data of mice

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00598_1676043058

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00599_1676043059


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00600_1676043064

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: MGG00601_1676043067


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: binned metagenome: MGG00602_1676043070

characteristic: title


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:University of Cologne, Faculty of Medicine and University Hospital Cologne, Department I of Internal Medicine, Center for Integrated Oncology Aachen Bonn Cologne Duesseldorf, 50931 Cologne, Germany

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: human

characteristic: common name

text: Protocols: LYN WT and LYN KO cells (2 clones per genotype) were cultured with primary CLL patient samples (3 different patients) for 72h. CLL cells were removed, feeder layers washed carefully before trypsinization and subsequently contaminating CLL cells were removed by magnetic depletion of CD45+ cells using human CD45 MojoSort reagents (Biolegend) according to the manufacturer’s instructions. mRNA was isolated HS-5 cells using the RNeasy plus kit (Qiagen) according to the manufacturer’s instructions and RNA quantity and quality was examined by NanoDrop1000 (Thermo Scientific) spectrometric measurement. Samples were processed and sequenced PE100, 50M reads per sample at the Cologne Center for Genomics according to in-house standards.

text: adult

characteristic: developmental stage

text: chronic leukemia

characteristic: disease

text: LYN knockout

characteristic: genotype

text: co-culture with chronic lymphocytic leukemia cells from patient_1

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: LYN deficiency

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cologne, Faculty of Medicine and University Hospital Cologne, Department I of Internal Medicine, Center for Integrated Oncology Aachen Bonn Cologne Duesseldorf, 50931 Cologne, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: stromal cell

text: human

text: adult

text: chronic leukemia

text: LYN knockout

text: co-culture with chronic lymphocytic leukemia cells from patient_2

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: LYN deficiency

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: human

characteristic: common name

characteristic: description

text: adult

text: chronic leukemia

text: LYN knockout

text: co-culture with chronic lymphocytic leukemia cells from patient_3

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: LYN deficiency

text: Homo sapiens

text: male

characteristic: title


text: public

text: ArrayExpress

text: stromal cell

text: human

text: adult

characteristic: developmental stage

text: chronic leukemia

characteristic: disease

text: LYN knockout

characteristic: genotype

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: LYN deficiency

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: stromal cell

text: human

text: adult

text: chronic leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: wild type

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: human

characteristic: common name

characteristic: description

text: adult

text: chronic leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: wild type

text: Homo sapiens

text: male


text: public

text: ArrayExpress

text: stromal cell

text: human

text: adult

characteristic: developmental stage

text: chronic leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: wild type

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: Protocols: Spleens were isolated from Lynwt/wt and Lyn-/- mice and digested according to a modified established protocol. In brief, 1ml of digestion cocktail (0.4mg/ml Collagenase P, 1.2U/ml Dispase and 50µg DNase I in 1640 RPMI with 1% P/S and 10% FBS) was injected per spleen and incubated for 5 min at RT. Then, spleens were mechanically minced and incubated for 30 minutes in additional 2ml of digestion cocktail at 37°C under repeated mixing. Cells were filtered through an 100µm filter, erythrocytes were lysed in ACK-buffer and subsequently washed in PBS. Resulting single cell suspension was labelled with 7AAD and fluorescent antibodies as indicated in Table S1. Splenic fibroblasts were sorted via FACS as 7AAD- CD45- CD71- CD31- CD29+ CD54+ cells at the FACS & Imaging Core Facility, Max-Planck Institute for Biology of Aging. mRNA was isolated using the RNeasy plus kit (Qiagen) according to the manufacturer’s instructions and RNA quantity and quality was checked by NanoDrop1000 (Thermo Scientific) spectrometric measurement. Samples were processed and sequenced PE100, 35M reads per sample in the Cologne Center for Genomics according to in-house standards.

text: wild type genotype

text: control

characteristic: individual

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

characteristic: strain

text: Control


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: splenic fibroblast

text: house mouse

text: LYN knockout

text: 7AAD-; CD45-; CD71-; CD31-; CD29+; CD54+

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus


text: public

text: ArrayExpress

text: splenic fibroblast

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Laboratory of Molecular Infection Medicine Sweden (MIMS), Department of molecular biology, Umea university

text: ArrayExpress

text: human

text: Protocols: Tonsils were collected from 5 human donors scheduled for tonsillectomy. B cells were enriched using negative selection magnetic beads (EasySep Human B Cell Isolation kit, Stemcell technologies, #17954). They were then pooled to avoid batch effects, with an average viability per donor of 92% (S.D. 1.5%). Library construction using 10x Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle. Enriched B cells were washed in ice-cold ATAC-seq resuspension buffer (RSB, 10 mM Tris pH 7.4, 10 mM NaCl, 3 mM MgCl2), spun down, and resuspended in 100 mL ATAC-seq lysis buffer (RSB plus 0.1% NP-40 and 0.1% Tween-20 (Thermo Fisher). Lysis was allowed to proceed on ice for 5 min, then 900 mL RSB was added before spinning down again and resuspending in 50 mL 1X Nuclei Resuspension Buffer (10x Genomics). To assess nuclei purity and integrity after lysis, nuclei were stained with Trypan Blue (15250061, Thermo Fisher Scientific), and DAPI (D1306, Thermo Fisher Scientific), according to manufacturer recommendation. If necessary, cell concentrations were adjusted to equal ratios (per donor) prior to starting single-cell GEM emulsion droplet generation with the ATAC-seq NextGEM kit (10x Genomics). Briefly, nuclei were incubated in a transposition mix. Transposed nuclei were then loaded into a Chromium Next GEM Chip J. 9.000 nuclei were loaded per lane, with a target recovery of 5.500 (doublet rate 4% - 4.8%). After GEM emulsion generation, reverse transcription, cDNA amplification and multiome sc library generation occurred, according to manufacturer specifications (Chromium Next GEM Single Cell Multiome ATAC + Gene Expression, CG000338 Rev A, 10x Genomics, September 2020).

text: adult

characteristic: developmental stage

text: tonsillitis

characteristic: disease

text: mixed

text: Homo sapiens

text: Homo sapiens

text: tonsil

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Laboratory of Molecular Infection Medicine Sweden (MIMS), Department of molecular biology, Umea university

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: adult

text: tonsillitis

text: mixed

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: male


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: tonsillitis

text: otherdonor

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kaunda Yamba, Zambia

text: public

tag: Namespace:Kaunda Yamba, Zambia

text: EnteroBase

text: EnteroBase

text: K. Yamba, Roslin

text: Whole genome sequencing data uploaded by EnteroBase user

text: Zambia, Lusaka

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Kaunda Yamba, Zambia

text: public

text: EnteroBase

text: EnteroBase

text: K. Yamba, Roslin

text: Zambia, Central, Lusaka

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: title


text: Kaunda Yamba, Zambia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: K. Yamba, Roslin

text: Zambia, Lusaka

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Kaunda Yamba, Zambia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: K. Yamba, Roslin

text: Zambia, Ndola

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Kaunda Yamba, Zambia

text: public

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: K. Yamba, Roslin

text: Zambia, Ndola

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Kaunda Yamba, Zambia

text: public

text: EnteroBase

text: EnteroBase

text: K. Yamba, Roslin

characteristic: description

text: Zambia, Lusaka

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


E-MTAB-12635:Sample 7

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12635:Sample 7

tag: Namespace:Laboratory of Molecular Medicine and Genomics

characteristic: age

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

characteristic: common name

text: Protocols: Human luminal ERα-positive MCF-7 breast cancer cell line (ATCC, #HTB-22) was purchased from the American Type Culture Collection (ATCC). MCF-7 was cultured in Dulbecco's Modified Eagle Medium (DMEM, Sigma-Aldrich) supplemented with 10% FBS (HyClone, Milan, Italy) and 100 U/ml penicillin, 100 mg/mL streptomycin and 250 ng/mL Amphotericin-B. MCF-7 cells were routinely tested for Mycoplasma contamination with a PCR mycoplasma detection kit (Abm, Richmond, BC, Canada). Genomic DNA were extracted from three independent biological replicates of MCF-7 cells in exponentially growing condition, treated with 6.4 μM of selective DOT1L inhibitor, the EPZ004777 namely EPZ (S7353, Selleckchem), for 6 days or with 100 nM of selective estrogen receptor degrader, Fulvestrant (ICI182, 780) namely ICI. To this aim, cell pellets were resuspended in 2 volumes of lysis buffer (10 mM Tris EDTA pH 8.4, 100 mM NaCl) supplemented with 3% sodium dodecyl sulphate and Proteinase K (Thermo Fischer scientific) and incubated for 15 minutes at 60°C under gentle shaking. Then, NaCl saturated was added and centrifuged for 15 min at 25000 rpm at 4 °C. Supernatants were then collected, diluted in 2 volume of ethanol and centrifuged for 10 min at 25000 rpm at 4 °C. DNA pellets were washed, resuspended and quantified. Three independent biological replicates of MCF-7 cells following 6 or 3 days of treatment with vehicle (DMSO) were used as control performed in parallel. DNA purity was determined by using NanoDrop spectrophotometer ND-2000 (Thermo Scientific) through the evaluation of the absorbance ratio A260/A280. DNA concentration was determined by using Quant-IT DNA Assay Kit-High Sensitivity and a Qubit Fluorometer (Life Technologies) and its quality and integrity assessed with the Agilent 4200 Tapestation System (Agilent Technologies). Genomic DNA were extracted from three independent biological replicates of MCF-7 cells in exponentially growing condition, treated with 6.4 μM of selective DOT1L inhibitor, the EPZ004777 namely EPZ (S7353, Selleckchem), for 6 days or with 100 nM of selective estrogen receptor degrader, Fulvestrant (ICI182, 780) namely ICI. To this aim, cell pellets were resuspended in 2 volumes of lysis buffer (10 mM Tris EDTA pH 8.4, 100 mM NaCl) supplemented with 3% sodium dodecyl sulphate and Proteinase K (Thermo Fischer scientific) and incubated for 15 minutes at 60°C under gentle shaking. Then, NaCl saturated was added and centrifuged for 15 min at 25000 rpm at 4 °C. RRBS libraries were constructed according to the manufacturer’s instructions. In detail, 2 μg of genomic DNA were used for each library preparation. DNA was digested with the MspI enzyme (CCGG site) at 37 °C for 16 h for each sample. The digested products were purified with the GeneJet PCR Purification Kit (Thermo Fisher Scientific) and libraries were prepared with TruSeq Library Prep Kit (Illumina). The recovered DNA was treated with the EZ DNA Methylation-Gold Kit (Zymo Research) for the bisulfite conversion. The converted DNA was amplified using PfuTurbo Cx Hotstart DNA Polymerase (Agilent Technologies).

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 7


E-MTAB-12635:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Molecular Medicine and Genomics

text: public

text: E-MTAB-12635:Sample 8

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

text: Sample 8

characteristic: title


E-MTAB-12635:Sample 9

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12635:Sample 9

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-12635:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12635:Sample 1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: breast invasive ductal carcinoma cell

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

text: Sample 1


E-MTAB-12635:Sample 2

text: public

text: E-MTAB-12635:Sample 2

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 2


E-MTAB-12635:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12635:Sample 3

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

characteristic: sex

text: Sample 3


E-MTAB-12635:Sample 10

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12635:Sample 10

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

text: Sample 10

characteristic: title


E-MTAB-12635:Sample 11

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-12635:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

text: Sample 11


E-MTAB-12635:Sample 12

text: public

text: E-MTAB-12635:Sample 12

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

text: Sample 12


E-MTAB-12635:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12635:Sample 4

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 4


E-MTAB-12635:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12635:Sample 5

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

characteristic: sex

text: Sample 5


E-MTAB-12635:Sample 6

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-12635:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

text: Sample 6

characteristic: title


text: Monash University

text: public

tag: Namespace:Monash University

text: not provided

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homosapiens

characteristic: host scientific name

text: Klebsiella pneumoniae

characteristic: isolate

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

tag: Namespace:ETH ZURICH D-BSSE

text: SIB

characteristic: broker name

text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

characteristic: collecting institution

characteristic: collection date

text: Christian Beisel et al

characteristic: collector name

text: Switzerland

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN

text: human

characteristic: common name

text: HEK293T cells, untransfected, treated with 1uM NMS-P715 for 3h.

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN

characteristic: INSDC center name

text: public

text: human

text: HEK293T cells, transfected with dCas9-EGFP and Chr1-TELO guide RNA, treated with 1uM NMS-P715 for 3h.

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: HEK293T cells, transfected with dCas9-EGFP and Chr9-CEN guide RNA, treated with 1uM NMS-P715 for 3h.

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: HEK293T cells, transfected with CENPTdC-dCas9-EGFP and Chr1-TELO guide RNA, treated with 1uM NMS-P715 for 3h.

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: Submitter Id

text: human

text: HEK293T cells, transfected with CENPTdC-dCas9-EGFP and Chr9-CEN guide RNA, treated with 1uM NMS-P715 for 3h.

text: Homo sapiens

text: Homo sapiens


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Christian Beisel et al

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Christian Beisel et al

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: organism

characteristic: title


text: Microbiomex

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: agricultural site

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: description

text: soil

characteristic: environmental medium

text: Brazil

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: agricultural site

characteristic: local environmental context

text: marsupial metagenome

text: MicroGeo

characteristic: project name

text: marsupial metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Microbiomex

characteristic: INSDC center name

text: public

text: agricultural site

text: soil

text: Paraguay

text: agricultural site

text: marsupial metagenome

text: MicroGeo

text: marsupial metagenome


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Christian Beisel et al

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Christian Beisel et al

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access


text: ETH ZURICH D-BSSE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Christian Beisel et al

characteristic: collector name

text: Switzerland

text: ZG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH D-BSSE

text: public

text: SIB

text: Christian Beisel et al

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: Ramazzottius varieornatus

characteristic: common name

text: 260 tardigrade specimens

characteristic: description

text: Control 24h

characteristic: group

text: Sediment samples from a roof gutter

text: Ramazzottius varieornatus

text: Ramazzottius varieornatus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COPENHAGEN

text: public

text: Ramazzottius varieornatus

text: 320 tardigrade specimens

text: Control 24h

text: Sediment samples from a roof gutter

text: Ramazzottius varieornatus

text: Ramazzottius varieornatus


characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

text: public

text: Ramazzottius varieornatus

text: 285 tardigrade specimens

text: Control 24h

text: Sediment samples from a roof gutter

text: Ramazzottius varieornatus

text: Ramazzottius varieornatus


text: UNIVERSITY OF COPENHAGEN

text: public

text: Ramazzottius varieornatus

text: 213 tardigrade specimens

text: Osmotic 24h

text: Sediment samples from a roof gutter

text: Ramazzottius varieornatus

text: Ramazzottius varieornatus


text: UNIVERSITY OF COPENHAGEN

text: public

text: Ramazzottius varieornatus

text: 220 tardigrade specimens

text: Osmotic 24h

text: Sediment samples from a roof gutter

text: Ramazzottius varieornatus

text: Ramazzottius varieornatus


text: UNIVERSITY OF COPENHAGEN

text: public

text: Ramazzottius varieornatus

text: 240 tardigrade specimens

text: Osmotic 24h

text: Sediment samples from a roof gutter

text: Ramazzottius varieornatus

text: Ramazzottius varieornatus


text: UNIVERSITY OF GENEVA

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506346 of study SRP278569.

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00482_1676276581


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00483_1676276598

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00484_1676276601


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00485_1676276603

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Mucispirillum schaedleri

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: Mucispirillum schaedleri

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00486_1676276605


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

text: not provided

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR12506343 of study SRP278569.

characteristic: description

text: Cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Metagenomic data of mice

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00487_1676276605

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

text: Host-associated

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Porphyromonadaceae bacterium

text: Metagenomic data of mice

characteristic: project name

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00488_1676276607