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text: Palliativzentrum Hildegard, Basel, Switzerland

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_03_14_d26c303c/2023

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_6cd9c54c/2023

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: University Psychiatric Clinics Basel, Basel, Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_81123cf3/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_8a7fa100/2023

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_03_14_e9d1bbce/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_60bd3de0/2023


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

text: SIB

text: Switzerland

text: BS

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text: restricted access

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characteristic: host sex

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text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_369b3fe4/2023

characteristic: isolate

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text: University Hospital Basel

text: public

characteristic: INSDC status

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characteristic: broker name

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text: Switzerland

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text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_03_14_909784e5/2023


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_b2659d0a/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_03_14_56bffb40/2023

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_6b146e05/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_9e19f6e9/2023


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_6eb13b6a/2023

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_e7eed51d/2023

text: Severe acute respiratory syndrome coronavirus 2


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_32630848/2023

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_d0dae27d/2023

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_03_14_29332661/2023

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-UHB-USB_2023_03_14_2b4c3836/2023


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_03_14_b820f9d7/2023

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

characteristic: collector name

text: Switzerland

text: GR

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GR-UHB-USB_2023_03_14_f37a8055/2023


E-MTAB-12786:Sample 1

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12786:Sample 1

tag: Namespace:UNIVERSITY OF CAMBRIDGE

text: ArrayExpress

text: Protocols: P. aeruginosa monocultures and co-cultures with A. fumigatus were harvested in the stationary phase of growth (triplicates) by aspirating the contents of the petri-dish well into a 15 ml falcon tube (passed over a 40 µm cell strainer) and combining this with an equal volume of RNA-later. Cultures stored in RNAlater were pelleted, resuspended in 1 mL RNA Bee, and RNA was extracted. Cultures stored in RNAlater were pelleted, resuspended in 1 mL RNA Bee, and RNA was extracted as described previously (https://doi.org/10.1073/pnas.1717525115). Microbial Genome Sequencing Center (MiGS) - DNAse Treatment, rRNA Depletion, Stranded Library Prep and sequencing

characteristic: description

text: wild type genotype

characteristic: genotype

text: monoculture

characteristic: growth condition

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 1


E-MTAB-12786:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: SRA accession

text: E-MTAB-12786:Sample 2

text: ArrayExpress

text: wild type genotype

text: monoculture

text: Pseudomonas aeruginosa UCBPP-PA14

characteristic: organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 2

characteristic: title


E-MTAB-12786:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-12786:Sample 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: monoculture

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 3


E-MTAB-12786:Sample 4

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-12786:Sample 4

text: ArrayExpress

text: wild type genotype

text: co-culture with Aspergillus fumigatus

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 4


E-MTAB-12786:Sample 5

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

text: public

text: E-MTAB-12786:Sample 5

text: ArrayExpress

text: wild type genotype

text: co-culture with Aspergillus fumigatus

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 5


E-MTAB-12786:Sample 6

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC last update

text: public

text: E-MTAB-12786:Sample 6

text: ArrayExpress

text: wild type genotype

text: co-culture with Aspergillus fumigatus

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 6


text: public

characteristic: INSDC status

tag: Namespace:1. Section of Paediatric Infectious Disease, Department of Infectious Disease, Imperial College London, London, UK 2. Centre for Paediatrics and Child Health, Imperial College London, London, UK 3. Section of Virology, Department of Infectious Diseases, Faculty of Medicine, Imperial College London, London, UK

unit: year

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Whole blood was collected at the time of recruitment into PAXgene blood miRNA tubes (PreAnalytiX) and frozen. Total RNA (including RNA > 18 nucleotides) was isolated using RNeasy microkit according to the manufacturer's instructions (Qiagen). Input material was normalised and strand specific library preparation was completed using NEBNext Ultra II mRNA kit (NEB) and NEB rRNA/globin depletion probes following manufacturer's instructions. Libraries were on a Tetrad (Bio-Rad) using in-house unique dual indexing primers. Individual libraries were normalised using Qubit and pooled together. The pooled library was diluted to ~10 nM for storage and denatured and further diluted prior to loading on the sequencer.

text: adult

characteristic: developmental stage

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: 1. Section of Paediatric Infectious Disease, Department of Infectious Disease, Imperial College London, London, UK 2. Centre for Paediatrics and Child Health, Imperial College London, London, UK 3. Section of Virology, Department of Infectious Diseases, Faculty of Medicine, Imperial College London, London, UK

text: public

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: description

text: adult

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: human

text: child

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: description

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: juvenile stage

text: probable bacterial infection

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: title


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: juvenile stage

characteristic: developmental stage

text: bacterial infection

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: less than 1

text: ArrayExpress

text: human

characteristic: description

text: infant

text: bacterial infection

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: infant

text: bacterial infection

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: infant

text: viral infection

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male


text: public

text: less than 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: infant

characteristic: developmental stage

text: viral infection

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: less than 1

text: ArrayExpress

text: human

characteristic: description

text: infant

text: viral infection

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: juvenile stage

text: viral infection

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: juvenile stage

text: viral infection

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: sex


E-MTAB-12785:Sample 1

text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-12785:Sample 1

text: ArrayExpress

characteristic: broker name

text: Protocols: Pseudomonas aeruginosa PA14 was precultured in SCFM2, and the OD600 was adjusted to 0.05 in 8 ml of SCFM2, in 6-well flat bottom cell culture plates. Gliotoxin (20 µM) or MeOH (solvent control) was added at log phase (optical density at 600 nm [OD600] = 0.3), and the cultures were incubated statically for an additional 4 h. 5 ml of each culture (triplicate) was then immediately added to an equal volume of RNA-later. Cultures stored in RNAlater were pelleted, resuspended in 1 mL RNA Bee, and RNA was extracted as described previously (https://doi.org/10.1073/pnas.1717525115). Microbial Genome Sequencing Center (MiGS) - DNAse Treatment, rRNA Depletion, Stranded Library Prep and sequencing

text: wild type genotype

characteristic: genotype

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 1


E-MTAB-12785:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-12785:Sample 2

text: ArrayExpress

text: wild type genotype

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 2

characteristic: title


E-MTAB-12785:Sample 3

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: SRA accession

text: E-MTAB-12785:Sample 3

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 3


E-MTAB-12785:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-12785:Sample 4

text: ArrayExpress

text: wild type genotype

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 4


E-MTAB-12785:Sample 5

text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-12785:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 5


E-MTAB-12785:Sample 6

text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-12785:Sample 6

text: ArrayExpress

text: wild type genotype

text: Pseudomonas aeruginosa UCBPP-PA14

characteristic: organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: whole organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: Sample 6


text: FZB

characteristic: INSDC center name

text: public

text: WGS of M. tuberculosis complex strains

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UCBL

characteristic: INSDC first public

text: public

text: Sequencing on Pacbio RS II

text: Proasellus coiffaiti

text: Proasellus coiffaiti

text: DNA for genome sequencing of Proasellus coiffaiti


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC last update

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This is a Metagenome-assembled genome derived from the primary whole genome shotgun (WGS) of multiple metagenomic data sets ERP008710,ERP011836,ERP115625. This sample represents a Metagenome-assembled genome from the runs of the following projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

text: feces

characteristic: environmental medium

text: not provided

unit: DD

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Agrobacterium tumefaciens

text: This sample represents a Metagenome-assembled genome assembled from runs of multiple projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

characteristic: project name

text: ERS606288,ERS606289,ERS606290,ERS606291,ERS606292,ERS606293,ERS606294,ERS606295,ERS606296,ERS606297,ERS606298,ERS606299,ERS606300,ERS606301,ERS606302,ERS606303,ERS606304,ERS606305,ERS606306,ERS606307,ERS606308,ERS606309,ERS606310,ERS606311,ERS606312,ERS606313,ERS606314,ERS606315,ERS606316,ERS606317,ERS606318,ERS606319,ERS606320,ERS606321,ERS606322,ERS606323,ERS606324,ERS606325,ERS606326,ERS606327,ERS606328,ERS606329,ERS606330,ERS606331,ERS606332,ERS606333,ERS606334,ERS606335,ERS606336,ERS606337,ERS606338,ERS606339,ERS606340,ERS606341,ERS606342,ERS606343,ERS606344,ERS606345,ERS606346,ERS606347,ERS606348,ERS606349,ERS606350,ERS606351,ERS606352,ERS606353,ERS606354,ERS606355,ERS606356,ERS606357,ERS606358,ERS606359,ERS606360,ERS606361,ERS606362,ERS606363,ERS606364,ERS606365,ERS606366,ERS606367,ERS606368,ERS606369,ERS606370,ERS606371,ERS606372,ERS606373,ERS606374,ERS606375,ERS606376,ERS606377,ERS606378,ERS606379,ERS606380,ERS606381,ERS606382,ERS606383,ERS606384,ERS606385,ERS606386,ERS606387,ERS606388,ERS606389,ERS606390,ERS606391,ERS606392,ERS606393,ERS606394,ERS606395,ERS606396,ERS606397,ERS606398,ERS606399,ERS606400,ERS606400,ERS606401,ERS606401,ERS606402,ERS606402,ERS606403,ERS606403,ERS606404,ERS606405,ERS606406,ERS606406,ERS606407,ERS606408,ERS606409,ERS606409,ERS606410,ERS606411,ERS606412,ERS606413,ERS606414,ERS606415,ERS606416,ERS606417,ERS606418,ERS606419,ERS606420,ERS606421,ERS606422,ERS606423,ERS606424,ERS606425,ERS606426,ERS606427,ERS606428,ERS606429,ERS606430,ERS606431,ERS606432,ERS606433,ERS606434,ERS606435,ERS606436,ERS606437,ERS606438,ERS606439,ERS606440,ERS606441,ERS606442,ERS606443,ERS606444,ERS606445,ERS606446,ERS606447,ERS606448,ERS606449,ERS606450,ERS606451,ERS606452,ERS606453,ERS606454,ERS606455,ERS606456,ERS606457,ERS606458,ERS606459,ERS606460,ERS606461,ERS606462,ERS606463,ERS606464,ERS606465,ERS606466,ERS606467,ERS606468,ERS606469,ERS606470,ERS606471,ERS606288,ERS606289,ERS606290,ERS606291,ERS606292,ERS606293,ERS606294,ERS606295,ERS606296,ERS606297,ERS606298,ERS606299,ERS606300,ERS606301,ERS606302,ERS606303,ERS606304,ERS606305,ERS606306,ERS606307,ERS606308,ERS606309,ERS606310,ERS606311,ERS606312,ERS606313,ERS606314,ERS606315,ERS606316,ERS606317,ERS606318,ERS606319,ERS606320,ERS606321,ERS606322,ERS606323,ERS606324,ERS606325,ERS606326,ERS606327,ERS606328,ERS606329,ERS606330,ERS606331,ERS606332,ERS606333,ERS606334,ERS606335,ERS606336,ERS606337,ERS606338,ERS606339,ERS606340,ERS606341,ERS606342,ERS606343,ERS606344,ERS606345,ERS606346,ERS606347,ERS606348,ERS606349,ERS606350,ERS606351,ERS606352,ERS606353,ERS606354,ERS606355,ERS606356,ERS606357,ERS606358,ERS606359,ERS606360,ERS606361,ERS606362,ERS606363,ERS606364,ERS606365,ERS606366,ERS606367,ERS606368,ERS606369,ERS606370,ERS606371,ERS606372,ERS606373,ERS606374,ERS606375,ERS606376,ERS606377,ERS606378,ERS606379,ERS606380,ERS606381,ERS606382,ERS606383,ERS606384,ERS606385,ERS606386,ERS606387,ERS606388,ERS606389,ERS606390,ERS606391,ERS606392,ERS606393,ERS606394,ERS606395,ERS606396,ERS606397,ERS606398,ERS606399,ERS606400,ERS606400,ERS606401,ERS606401,ERS606402,ERS606402,ERS606403,ERS606403,ERS606404,ERS606405,ERS606406,ERS606406,ERS606407,ERS606408,ERS606409,ERS606409,ERS606410,ERS606411,ERS606412,ERS606413,ERS606414,ERS606415,ERS606416,ERS606417,ERS606418,ERS606419,ERS606420,ERS606421,ERS606422,ERS606423,ERS606424,ERS606425,ERS606426,ERS606427,ERS606428,ERS606429,ERS606430,ERS606431,ERS606432,ERS606433,ERS606434,ERS606435,ERS606436,ERS606437,ERS606438,ERS606439,ERS606440,ERS606441,ERS606442,ERS606443,ERS606444,ERS606445,ERS606446,ERS606447,ERS606448,ERS606449,ERS606450,ERS606451,ERS606452,ERS606453,ERS606454,ERS606455,ERS606456,ERS606457,ERS606458,ERS606459,ERS606460,ERS606461,ERS606462,ERS606463,ERS606464,ERS606465,ERS606466,ERS606467,ERS606468,ERS606469,ERS606470,ERS606471,ERS3493779,ERS3493780,ERS3493781,ERS3493782,ERS3493783,ERS3493784,ERS3493785,ERS3493786,ERS3493787,ERS3493788,ERS3493789,ERS3493790,ERS3493791,ERS3493792,ERS3493793,ERS3493794,ERS3493795,ERS3493796,ERS3493797,ERS3493798,ERS3493799,ERS3493800,ERS3493801,ERS3493802,ERS3493803,ERS3493804,ERS3493805,ERS3493806,ERS3493807,ERS3493808,ERS3493809,ERS3493810,ERS3493811,ERS3493812,ERS3493813,ERS3493814,ERS3493815,ERS3493816,ERS3493817,ERS3493818,ERS3493819,ERS3493820,ERS3493821,ERS3493822,ERS3493823,ERS3493824,ERS3493825,ERS3493826,ERS3493827,ERS3493828,ERS3493829,ERS3493830,ERS3493831,ERS3493832,ERS3493833,ERS3493834,ERS3493835,ERS3493836,ERS3493837,ERS3493838,ERS3493839,ERS3493840,ERS3493841,ERS3493842,ERS3493843,ERS3493844,ERS3493845,ERS3493846,ERS3493847,ERS3493848,ERS3493849,ERS3493850,ERS3493851,ERS3493852,ERS3493853,ERS3494289,ERS3494290,ERS3494291,ERS3494292,ERS3494293,ERS3494294,ERS3494295,ERS3494296,ERS3494297,ERS3494298,ERS3494299,ERS3494300,ERS3494301,ERS3494302,ERS3494303,ERS3494304,ERS3494305,ERS3494306,ERS3494307,ERS3494308,ERS3494309,ERS3494310,ERS3494311,ERS3494312,ERS3494313,ERS3494314,ERS3494315,ERS3494316,ERS3494317,ERS3494318,ERS823133,ERS823134,ERS823135

characteristic: sample derived from

text: Agrobacterium tumefaciens

text: Illumina HiSeq 2000, Illumina MiSeq, Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-16_1678881632


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Pseudomonas aeruginosa C3719

characteristic: organism

text: Pseudomonas aeruginosa C3719

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-18_1678881731

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides intestinalis

characteristic: project name

characteristic: sample derived from

text: Bacteroides intestinalis

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-19_1678881723


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Reyranella sp.

characteristic: organism

text: uncultured Reyranella sp.

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-20_1678881660

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Parabacteroides goldsteinii

characteristic: project name

characteristic: sample derived from

text: Parabacteroides goldsteinii

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-21_1678881730


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-22_1678881676

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides sp. 41_26

characteristic: project name

characteristic: sample derived from

text: Bacteroides sp. 41_26

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-24_1678881672


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Eubacterium sp.

characteristic: organism

text: uncultured Eubacterium sp.

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-25_1678881637

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides thetaiotaomicron

characteristic: project name

characteristic: sample derived from

text: Bacteroides thetaiotaomicron

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-26_1678881699


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Clostridium perfringens SM101

characteristic: organism

text: Clostridium perfringens SM101

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-28_1678881632

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides congonensis

characteristic: project name

characteristic: sample derived from

text: Bacteroides congonensis

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-29_1678881675


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-32_1678881660

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-33_1678881657


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

text: This is a Metagenome-assembled genome derived from the primary whole genome shotgun (WGS) of multiple metagenomic data sets ERP008710,ERP011836,ERP115625. This sample represents a Metagenome-assembled genome from the runs of the following projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Duncaniella sp.

characteristic: organism

text: This sample represents a Metagenome-assembled genome assembled from runs of multiple projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

text: uncultured Duncaniella sp.

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-36_1678881718

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

text: ERS606288,ERS606289,ERS606290,ERS606291,ERS606292,ERS606293,ERS606294,ERS606295,ERS606296,ERS606297,ERS606298,ERS606299,ERS606300,ERS606301,ERS606302,ERS606303,ERS606304,ERS606305,ERS606306,ERS606307,ERS606308,ERS606309,ERS606310,ERS606311,ERS606312,ERS606313,ERS606314,ERS606315,ERS606316,ERS606317,ERS606318,ERS606319,ERS606320,ERS606321,ERS606322,ERS606323,ERS606324,ERS606325,ERS606326,ERS606327,ERS606328,ERS606329,ERS606330,ERS606331,ERS606332,ERS606333,ERS606334,ERS606335,ERS606336,ERS606337,ERS606338,ERS606339,ERS606340,ERS606341,ERS606342,ERS606343,ERS606344,ERS606345,ERS606346,ERS606347,ERS606348,ERS606349,ERS606350,ERS606351,ERS606352,ERS606353,ERS606354,ERS606355,ERS606356,ERS606357,ERS606358,ERS606359,ERS606360,ERS606361,ERS606362,ERS606363,ERS606364,ERS606365,ERS606366,ERS606367,ERS606368,ERS606369,ERS606370,ERS606371,ERS606372,ERS606373,ERS606374,ERS606375,ERS606376,ERS606377,ERS606378,ERS606379,ERS606380,ERS606381,ERS606382,ERS606383,ERS606384,ERS606385,ERS606386,ERS606387,ERS606388,ERS606389,ERS606390,ERS606391,ERS606392,ERS606393,ERS606394,ERS606395,ERS606396,ERS606397,ERS606398,ERS606399,ERS606400,ERS606400,ERS606401,ERS606401,ERS606402,ERS606402,ERS606403,ERS606403,ERS606404,ERS606405,ERS606406,ERS606406,ERS606407,ERS606408,ERS606409,ERS606409,ERS606410,ERS606411,ERS606412,ERS606413,ERS606414,ERS606415,ERS606416,ERS606417,ERS606418,ERS606419,ERS606420,ERS606421,ERS606422,ERS606423,ERS606424,ERS606425,ERS606426,ERS606427,ERS606428,ERS606429,ERS606430,ERS606431,ERS606432,ERS606433,ERS606434,ERS606435,ERS606436,ERS606437,ERS606438,ERS606439,ERS606440,ERS606441,ERS606442,ERS606443,ERS606444,ERS606445,ERS606446,ERS606447,ERS606448,ERS606449,ERS606450,ERS606451,ERS606452,ERS606453,ERS606454,ERS606455,ERS606456,ERS606457,ERS606458,ERS606459,ERS606460,ERS606461,ERS606462,ERS606463,ERS606464,ERS606465,ERS606466,ERS606467,ERS606468,ERS606469,ERS606470,ERS606471,ERS606288,ERS606289,ERS606290,ERS606291,ERS606292,ERS606293,ERS606294,ERS606295,ERS606296,ERS606297,ERS606298,ERS606299,ERS606300,ERS606301,ERS606302,ERS606303,ERS606304,ERS606305,ERS606306,ERS606307,ERS606308,ERS606309,ERS606310,ERS606311,ERS606312,ERS606313,ERS606314,ERS606315,ERS606316,ERS606317,ERS606318,ERS606319,ERS606320,ERS606321,ERS606322,ERS606323,ERS606324,ERS606325,ERS606326,ERS606327,ERS606328,ERS606329,ERS606330,ERS606331,ERS606332,ERS606333,ERS606334,ERS606335,ERS606336,ERS606337,ERS606338,ERS606339,ERS606340,ERS606341,ERS606342,ERS606343,ERS606344,ERS606345,ERS606346,ERS606347,ERS606348,ERS606349,ERS606350,ERS606351,ERS606352,ERS606353,ERS606354,ERS606355,ERS606356,ERS606357,ERS606358,ERS606359,ERS606360,ERS606361,ERS606362,ERS606363,ERS606364,ERS606365,ERS606366,ERS606367,ERS606368,ERS606369,ERS606370,ERS606371,ERS606372,ERS606373,ERS606374,ERS606375,ERS606376,ERS606377,ERS606378,ERS606379,ERS606380,ERS606381,ERS606382,ERS606383,ERS606384,ERS606385,ERS606386,ERS606387,ERS606388,ERS606389,ERS606390,ERS606391,ERS606392,ERS606393,ERS606394,ERS606395,ERS606396,ERS606397,ERS606398,ERS606399,ERS606400,ERS606400,ERS606401,ERS606401,ERS606402,ERS606402,ERS606403,ERS606403,ERS606404,ERS606405,ERS606406,ERS606406,ERS606407,ERS606408,ERS606409,ERS606409,ERS606410,ERS606411,ERS606412,ERS606413,ERS606414,ERS606415,ERS606416,ERS606417,ERS606418,ERS606419,ERS606420,ERS606421,ERS606422,ERS606423,ERS606424,ERS606425,ERS606426,ERS606427,ERS606428,ERS606429,ERS606430,ERS606431,ERS606432,ERS606433,ERS606434,ERS606435,ERS606436,ERS606437,ERS606438,ERS606439,ERS606440,ERS606441,ERS606442,ERS606443,ERS606444,ERS606445,ERS606446,ERS606447,ERS606448,ERS606449,ERS606450,ERS606451,ERS606452,ERS606453,ERS606454,ERS606455,ERS606456,ERS606457,ERS606458,ERS606459,ERS606460,ERS606461,ERS606462,ERS606463,ERS606464,ERS606465,ERS606466,ERS606467,ERS606468,ERS606469,ERS606470,ERS606471,ERS3493779,ERS3493780,ERS3493781,ERS3493782,ERS3493783,ERS3493784,ERS3493785,ERS3493786,ERS3493787,ERS3493788,ERS3493789,ERS3493790,ERS3493791,ERS3493792,ERS3493793,ERS3493794,ERS3493795,ERS3493796,ERS3493797,ERS3493798,ERS3493799,ERS3493800,ERS3493801,ERS3493802,ERS3493803,ERS3493804,ERS3493805,ERS3493806,ERS3493807,ERS3493808,ERS3493809,ERS3493810,ERS3493811,ERS3493812,ERS3493813,ERS3493814,ERS3493815,ERS3493816,ERS3493817,ERS3493818,ERS3493819,ERS3493820,ERS3493821,ERS3493822,ERS3493823,ERS3493824,ERS3493825,ERS3493826,ERS3493827,ERS3493828,ERS3493829,ERS3493830,ERS3493831,ERS3493832,ERS3493833,ERS3493834,ERS3493835,ERS3493836,ERS3493837,ERS3493838,ERS3493839,ERS3493840,ERS3493841,ERS3493842,ERS3493843,ERS3493844,ERS3493845,ERS3493846,ERS3493847,ERS3493848,ERS3493849,ERS3493850,ERS3493851,ERS3493852,ERS3493853,ERS3494289,ERS3494290,ERS3494291,ERS3494292,ERS3494293,ERS3494294,ERS3494295,ERS3494296,ERS3494297,ERS3494298,ERS3494299,ERS3494300,ERS3494301,ERS3494302,ERS3494303,ERS3494304,ERS3494305,ERS3494306,ERS3494307,ERS3494308,ERS3494309,ERS3494310,ERS3494311,ERS3494312,ERS3494313,ERS3494314,ERS3494315,ERS3494316,ERS3494317,ERS3494318,ERS823133,ERS823134,ERS823135

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2000, Illumina MiSeq, Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-38_1678881684


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Clostridium clostridioforme CAG:132

characteristic: organism

text: Clostridium clostridioforme CAG:132

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-40_1678881685

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-41_1678881649


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Eubacterium sp.

characteristic: organism

text: uncultured Eubacterium sp.

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-42_1678881642

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: Lachnospiraceae bacterium

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-45_1678881682


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Acetatifactor sp.

characteristic: organism

text: uncultured Acetatifactor sp.

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-46_1678881686

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-47_1678881638


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Bacteroides caccae

characteristic: organism

text: Bacteroides caccae

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-49_1678881640

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Parabacteroides sp. HGS0025

characteristic: project name

characteristic: sample derived from

text: Parabacteroides sp. HGS0025

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-50_1678881714


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Acetatifactor sp.

characteristic: organism

text: uncultured Acetatifactor sp.

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-51_1678881701

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: Lachnospiraceae bacterium

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-52_1678881672


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

text: CheckM

text: This is a Metagenome-assembled genome derived from the primary whole genome shotgun (WGS) of multiple metagenomic data sets ERP008710,ERP011836,ERP115625. This sample represents a Metagenome-assembled genome from the runs of the following projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

characteristic: description

text: feces

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: multi-marker approach

text: Metagenome-assembled genome: iMGMC-53_1678881720

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: megahit

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Eubacterium sp.

text: This sample represents a Metagenome-assembled genome assembled from runs of multiple projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacterium sp.

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iMGMC-55_1678881675