characteristic: ENA-CHECKLIST

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characteristic: External Id

text: NVRL

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S23IRL00007124/2023

characteristic: title


status: PUBLIC

tag: attribute

text: NVRL

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characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

unit: DD

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

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text: Severe acute respiratory syndrome coronavirus 2

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characteristic: virus identifier


characteristic: ENA-CHECKLIST

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characteristic: common name

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characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

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characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S23IRL00007129/2023

characteristic: title


text: NVRL

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text: Ireland

text: Europe / Ireland / Dublin

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text: hCoV-19/Ireland/D-NVRL-S23IRL00007076/2023


characteristic: ENA-CHECKLIST

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characteristic: common name

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characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S23IRL00007183/2023

characteristic: virus identifier


text: NVRL

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text: Irish Consortium for Sequencing Covid

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text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: human

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008195/2023

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characteristic: ENA-CHECKLIST

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characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

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text: Europe / Ireland / Dublin

text: human

text: not provided

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text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008215/2023


text: NVRL

text: public

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text: Irish Consortium for Sequencing Covid

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text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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characteristic: common name

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text: Europe / Ireland / Dublin

text: human

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text: Homo sapiens

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characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S23IRL00008232/2023

characteristic: title


text: NVRL

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text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: human

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text: female

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008219/2023


characteristic: ENA-CHECKLIST

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text: National Virus Reference Laboratory

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characteristic: common name

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

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characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S23IRL00008197/2023

characteristic: virus identifier


text: NVRL

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text: Irish Consortium for Sequencing Covid

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text: National Virus Reference Laboratory

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text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: human

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text: Homo sapiens

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text: female

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text: not provided

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

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characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

text: not provided

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text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S23IRL00008108/2023


text: NVRL

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text: Irish Consortium for Sequencing Covid

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text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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characteristic: virus identifier


characteristic: ENA-CHECKLIST

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text: National Virus Reference Laboratory

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characteristic: common name

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text: Ireland

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text: Europe / Ireland / Dublin

text: human

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008390/2023

characteristic: title


text: NVRL

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: human

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text: male

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text: not provided

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008340/2023


characteristic: ENA-CHECKLIST

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text: National Virus Reference Laboratory

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text: Europe / Ireland / Dublin

text: human

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text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

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characteristic: virus identifier


text: NVRL

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

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text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: Homo sapiens

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text: female

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text: not provided

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008328/2023

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text: NVRL

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text: National Virus Reference Laboratory

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characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

text: not provided

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text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S23IRL00008373/2023


text: NVRL

text: public

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

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text: not provided

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text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: female

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text: Oro-Nasopharyngeal swab

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characteristic: virus identifier


characteristic: ENA-CHECKLIST

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characteristic: External Id

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text: National Virus Reference Laboratory

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

text: not provided

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text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S23IRL00008281/2023

characteristic: title


text: NVRL

text: public

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

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text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: Homo sapiens

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text: female

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text: not provided

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text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008272/2023


characteristic: ENA-CHECKLIST

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text: National Virus Reference Laboratory

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characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S23IRL00008381/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

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text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: Homo sapiens

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text: male

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/D-NVRL-S23IRL00008044/2023

characteristic: title


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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

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characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S23IRL00008620/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Donegal

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: Homo sapiens

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text: female

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text: not provided

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/DL-NVRL-S23IRL00008048/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

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text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

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characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/G-NVRL-S23IRL00006990/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Galway

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

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text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/G-NVRL-S23IRL00008133/2023


characteristic: ENA-CHECKLIST

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text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

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characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/G-NVRL-S23IRL00008057/2023

characteristic: virus identifier


text: NVRL

text: public

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

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text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/KE-NVRL-S23IRL00007000/2023

characteristic: title


characteristic: ENA-CHECKLIST

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text: NVRL

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text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-S23IRL00008174/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/KE-NVRL-S23IRL00008172/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-S23IRL00008275/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-S23IRL00008344/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-S23IRL00008052/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/KE-NVRL-S23IRL00008578/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kerry

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/KY-NVRL-S23IRL00007175/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Kerry

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/KY-NVRL-S23IRL00007173/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Longford

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LD-NVRL-S23IRL00008164/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Longford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/LD-NVRL-S23IRL00008183/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Louth

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LH-NVRL-S23IRL00007026/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Louth

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/LH-NVRL-S23IRL00007082/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Louth

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/LH-NVRL-S23IRL00008246/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Limerick

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/LK-NVRL-S23IRL00008138/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Limerick

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/LK-NVRL-S23IRL00008139/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Limerick

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/LK-NVRL-S23IRL00008140/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Limerick

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LK-NVRL-S23IRL00008137/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Limerick

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/LK-NVRL-S23IRL00008339/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Limerick

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/LK-NVRL-S23IRL00008596/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Leitrim

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/LM-NVRL-S23IRL00008262/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Leitrim

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LM-NVRL-S23IRL00008393/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Laois

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/LS-NVRL-S23IRL00007247/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Laois

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LS-NVRL-S23IRL00008187/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Laois

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/LS-NVRL-S23IRL00008128/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-S23IRL00007027/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/MH-NVRL-S23IRL00007098/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008194/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008211/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008058/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008253/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008266/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008280/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008118/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-S23IRL00008704/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Monaghan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MN-NVRL-S23IRL00008117/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Mayo

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/MO-NVRL-S23IRL00008190/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Mayo

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/MO-NVRL-S23IRL00008119/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Mayo

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/MO-NVRL-S23IRL00008604/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Offaly

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/OY-NVRL-S23IRL00007144/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Offaly

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/OY-NVRL-S23IRL00008176/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Offaly

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/OY-NVRL-S23IRL00008351/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Offaly

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/OY-NVRL-S23IRL00008254/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Roscommon

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/RN-NVRL-S23IRL00007142/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Roscommon

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/RN-NVRL-S23IRL00007146/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Sligo

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/SO-NVRL-S23IRL00007017/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Sligo

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/SO-NVRL-S23IRL00007140/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Sligo

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/SO-NVRL-S23IRL00008240/2023

characteristic: virus identifier


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Westmeath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/WH-NVRL-S23IRL00007100/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Westmeath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/WH-NVRL-S23IRL00008347/2023


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Westmeath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/WH-NVRL-S23IRL00008349/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wicklow

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WW-NVRL-S23IRL00007248/2023

characteristic: title


text: NVRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Wicklow

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/WW-NVRL-S23IRL00007152/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Ibadan

text: Nigeria

characteristic: geographic location (country and/or sea)

text: Ibadan

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Bacterial genome


text: Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Ibadan

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Nigeria

text: Ibadan

characteristic: geographic location (region and locality)

text: Escherichia coli

text: Escherichia coli

text: Bacterial genome

characteristic: title


text: NIPH

text: public

text: ELIXIR-Norway

characteristic: broker name

text: N. meningitidis

characteristic: common name

text: Norway

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Nigeria

text: Ibadan

text: Salmonella enterica

text: Salmonella enterica

text: Bacterial genome


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: sample capture status


text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: not provided

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: Acinetobacter baumanii strain Ab09 progenitor used in Aci01-1 phage infection experiments

characteristic: description

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Acinetobacter baumanii variant resistant to infection by phage Aci01-1

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

characteristic: SRA accession

tag: Namespace:Swedish University of Agricultural Sciences

characteristic: Submitter Id

unit: L

characteristic: amount or size of sample collected

text: not provided

characteristic: area of sampling site

characteristic: collection date

text: Untreated wastewater was collected in Kalmar at Kalmarsundsverket on 2021-11-01 over 24 hours using a flow compensated sampler. Viral genomic material was concentrated and extracted by the direct capture method using the Maxwell RSC Enviro Total Nucleic Acid Kit (Promega Corporation, Madison, WI, USA, Cat # AS1831) according to the manufacturer’s protocol (Promega, # TM663 Rev 4/22) at SEEC-SLU. Sequencing libraries were made using Ion AmpliSeq SARS-CoV-2 Insight Research Assay (Thermo Fisher Scientific, Waltham, MA, USA, Cat # A51306) and the SuperScript™ VILO™ cDNA Synthesis Kit (Thermo Fisher, # 11754050) according to the manufacturer’s protocols “Reverse transcribe RNA with the SuperScript™ VILO™ cDNA Synthesis Kit” (Thermo Fisher, # MAN0019277, Rev B.0, pp. 3-4) and “Prepare libraries on the Ion Chef™ Instrument” (Thermo Fisher, # MAN0024915 Rev B.0, Ch 4, pp. 42-43) at the National Genomic Infrastructure (NGI) at SciLifeLab in Uppsala, Sweden. Sequencing was performed on the Ion S5 XL System (Thermo Fisher, # A27214) multiplexing using Torrent Suite Software version 5.16.1 configured according to the manufacturer’s protocol (Thermo Fisher, # MAN0024915 Rev B.0, Ch 5) at NGI.

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kalmar

characteristic: geographic location (region and locality)

text: virus

characteristic: investigation type

text: Kalmarsundsverket

characteristic: name of the sampling site

text: Ion AmpliSeq SARS-CoV-2 Insight Research Assay with SuperScript™ VILO™ cDNA Synthesis Kit using Ion Chef™ (Thermo Fisher, # A51306, # 11754050, # MAN0019277, Rev B.0, pp. 3-4, # MAN0024915 Rev B.0, Ch 4, pp. 42-43)

characteristic: nucleic acid amplification

text: TNA concentration using Maxwell RSC Enviro Total Nucleic Acid Kit (Promega, # AS1831 & # TM663 Rev 4/22)

characteristic: nucleic acid extraction

text: wastewater metagenome

characteristic: population size of the catchment area

characteristic: receipt date

unit: day

characteristic: sample storage duration

text: not provided

characteristic: sample storage location

characteristic: sample transportation date

characteristic: sample transportation time

text: 24 hour period, using a flow compensated sampler

characteristic: sampling time point

text: wastewater metagenome

text: wastewater treatment plant (municipal)

characteristic: sewage type

text: not provided

characteristic: size of the catchment area

characteristic: surveillance target

text: Severe acute respiratory syndrome coronavirus 2

characteristic: surveillance target (scientific name)

text: 2021-W44 Kalmar Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Swedish University of Agricultural Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: not provided

characteristic: area of sampling site

characteristic: collection date

text: Untreated wastewater was collected in Uppsala at Kungsängsverket over 1 week leading up to 2021-11-29. Daily samples were collected over 24 hours using a flow compensated sampler then combined flow-proportionally into a composite weekly sample. Viral genomic material was concentrated and extracted by the direct capture method using the Maxwell RSC Enviro Total Nucleic Acid Kit (Promega Corporation, Madison, WI, USA, Cat # AS1831) according to the manufacturer’s protocol (Promega, # TM663 Rev 4/22) at SEEC-SLU. Sequencing libraries were made using Ion AmpliSeq SARS-CoV-2 Insight Research Assay (Thermo Fisher Scientific, Waltham, MA, USA, Cat # A51306) and the SuperScript™ VILO™ cDNA Synthesis Kit (Thermo Fisher, # 11754050) according to the manufacturer’s protocols “Reverse transcribe RNA with the SuperScript™ VILO™ cDNA Synthesis Kit” (Thermo Fisher, # MAN0019277, Rev B.0, pp. 3-4) and “Prepare libraries on the Ion Chef™ Instrument” (Thermo Fisher, # MAN0024915 Rev B.0, Ch 4, pp. 42-43) at the National Genomic Infrastructure (NGI) at SciLifeLab in Uppsala, Sweden. Sequencing was performed on the Ion S5 XL System (Thermo Fisher, # A27214) multiplexing using Torrent Suite Software version 5.16.1 configured according to the manufacturer’s protocol (Thermo Fisher, # MAN0024915 Rev B.0, Ch 5) at NGI.

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Uppsala

text: virus

text: Kungsängsverket

text: wastewater metagenome

characteristic: organism

text: not provided

text: 1 week period, flow-proportionally combined from daily samples, daily sampling over 24 hour period, using a flow compensated sampler

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: not provided

text: 2021-W48 Uppsala Amplified SARS-CoV-2 RNA from wastewater

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: not provided

text: Untreated wastewater was collected in Stockholm at Käppalaverket, Bromma reningsverk and Henriksdal reningsverk on 2021-12-06 over 24 hours using flow compensated samplers. The samples were then combined flow-proportionally into a composite sample for the city. Viral genomic material was concentrated and extracted by the direct capture method using the Maxwell RSC Enviro Total Nucleic Acid Kit (Promega Corporation, Madison, WI, USA, Cat # AS1831) according to the manufacturer’s protocol (Promega, # TM663 Rev 4/22) at SEEC-KTH. Sequencing libraries were made using Ion AmpliSeq SARS-CoV-2 Insight Research Assay (Thermo Fisher Scientific, Waltham, MA, USA, Cat # A51306) and the SuperScript™ VILO™ cDNA Synthesis Kit (Thermo Fisher, # 11754050) according to the manufacturer’s protocols “Reverse transcribe RNA with the SuperScript™ VILO™ cDNA Synthesis Kit” (Thermo Fisher, # MAN0019277, Rev B.0, pp. 3-4) and “Prepare libraries on the Ion Chef™ Instrument” (Thermo Fisher, # MAN0024915 Rev B.0, Ch 4, pp. 42-43) at the National Genomic Infrastructure (NGI) at SciLifeLab in Uppsala, Sweden. Sequencing was performed on the Ion S5 XL System (Thermo Fisher, # A27214) multiplexing using Torrent Suite Software version 5.16.1 configured according to the manufacturer’s protocol (Thermo Fisher, # MAN0024915 Rev B.0, Ch 5) at NGI.

text: Sweden

text: Stockholm

characteristic: geographic location (region and locality)

text: virus

characteristic: investigation type

characteristic: name of the sampling site

characteristic: nucleic acid amplification

characteristic: nucleic acid extraction

text: wastewater metagenome

characteristic: population size of the catchment area

characteristic: receipt date

characteristic: sample storage duration

text: not provided

characteristic: sample storage location

characteristic: sample transportation date

characteristic: sample transportation time

text: 24 hour period, using a flow compensated sampler at each site, flow-proportionally combined into a single sample

characteristic: sampling time point

text: wastewater metagenome

text: wastewater treatment plant (municipal)

characteristic: sewage type

text: not provided

characteristic: size of the catchment area

characteristic: surveillance target

characteristic: surveillance target (scientific name)

text: 2021-W49 Stockholm Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: not provided

characteristic: area of sampling site

characteristic: collection date

text: Untreated wastewater was collected in Malmö at Sjölunda reningsverk on 2021-12-06 over 24 hours using a flow compensated sampler. Viral genomic material was concentrated and extracted by the direct capture method using the Maxwell RSC Enviro Total Nucleic Acid Kit (Promega Corporation, Madison, WI, USA, Cat # AS1831) according to the manufacturer’s protocol (Promega, # TM663 Rev 4/22) at SEEC-KTH. Sequencing libraries were made using Ion AmpliSeq SARS-CoV-2 Insight Research Assay (Thermo Fisher Scientific, Waltham, MA, USA, Cat # A51306) and the SuperScript™ VILO™ cDNA Synthesis Kit (Thermo Fisher, # 11754050) according to the manufacturer’s protocols “Reverse transcribe RNA with the SuperScript™ VILO™ cDNA Synthesis Kit” (Thermo Fisher, # MAN0019277, Rev B.0, pp. 3-4) and “Prepare libraries on the Ion Chef™ Instrument” (Thermo Fisher, # MAN0024915 Rev B.0, Ch 4, pp. 42-43) at the National Genomic Infrastructure (NGI) at SciLifeLab in Uppsala, Sweden. Sequencing was performed on the Ion S5 XL System (Thermo Fisher, # A27214) multiplexing using Torrent Suite Software version 5.16.1 configured according to the manufacturer’s protocol (Thermo Fisher, # MAN0024915 Rev B.0, Ch 5) at NGI.

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Malmö

text: virus

text: Sjölunda reningsverk

text: wastewater metagenome

characteristic: organism

text: not provided

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: not provided

text: 2021-W49 Malmö Amplified SARS-CoV-2 RNA from wastewater

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:MCD, Centre de Biologie Integrative (CBI), CNRS, Universite de Toulouse, UT3

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: For Hi-C: 10x106 cells were harvested by trypsin and resuspend in PBS. Formaldehyde was added at a final concentration of 2% and crosslinking was allowed to proceed for 10 min at room temperature. Reaction was stopped by adding Stop solution from Arima Hi-C kit (Arima Genomics) and incubation for 5 minutes at room temperature then incubate for 15 min on ice. Cells were resuspended in PBS and 1x106 cells per aliquot were freeze in liquid nitrogen. DIvA (AsiSI-ER-U20S) cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with antibiotics, 10% FCS (Invitrogen) with 1 µg/mL puromycin (DIvA cells) at 37°C under a humidified atmosphere with 5% CO2. For AsiSI-dependent DSB induction, cells were treated with 300 nM OHT (Sigma; H7904) for 4h. siRNA transfection were performed using the 4D Nucleofector X (kit SE cell line) according to the manufacturer's instructions and subsequent treatment(s) were performed 48 h later. siRNA: CTRL: siGENOME Non-targeting Control #2 Dharmacon (D-001206-13), siPER2 Dharmacon (M-012977-01) Hi-C experiments were performed in DIvA cells using the Arima Hi-C kit (Arima Genomics) according to the manufacturer’s instructions. 1 million cells were used by condition. Briefly, cells were cross-linked with 2% formaldehyde for 10 min at RT, lysed and chromatin was digested with two different restriction enzymes included in the kit. Ends were filled-in in the presence of biotinylated nucleotides, followed by subsequent ligation. Ligated DNA was sonicated using the Covaris S220 to an average fragment size of 350 bp with the following parameters (Peak incident power: 140; Duty factor: 10%; Cycles per burst: 200; Treatment time: 70s). DNA was then subjected to a double-size selection to retain DNA fragments between 200 and 600 bp using Ampure XP beads (Beckman Coulter). Biotin-ligated DNA was precipitated with streptavidin-coupled magnetic beads (included in the kit). Hi-C library was prepared on beads using the NEBNext® Ultra™ II DNA Library Prep Kit for Illumina and NEBNext® Multiplex Oligos for Illumina (New England Biolabs) following instructions from the Arima Hi-C kit.

text: osteosarcoma

characteristic: disease

text: AsiSI-ER

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: bone

characteristic: organism part

text: Homo sapiens


characteristic: External Id

text: MCD, Centre de Biologie Integrative (CBI), CNRS, Universite de Toulouse, UT3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: osteosarcoma

text: AsiSI-ER

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone

text: Homo sapiens


text: public

text: ArrayExpress

text: human

text: Protocols: For ChIP: Formaldehyde was added to the culture medium at a final concentration of 1% and crosslinking was allowed to proceed for 15 min at room temperature. Reaction was stopped by adding glycine (0.125M final concentration) and incubation for 5 minutes at room temperature. Cells were washed twice with PBS and harvested by scraping. DIvA (AsiSI-ER-U20S) cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with antibiotics, 10% FCS (Invitrogen) with 1 µg/mL puromycin (DIvA cells) at 37°C under a humidified atmosphere with 5% CO2. For AsiSI-dependent DSB induction, cells were treated with 300 nM OHT (Sigma; H7904) for 4h. siRNA transfection were performed using the 4D Nucleofector X (kit SE cell line) according to the manufacturer's instructions and subsequent treatment(s) were performed 48 h later. siRNA: CTRL: siGENOME Non-targeting Control #2 Dharmacon (D-001206-13), siPER2 Dharmacon (M-012977-01) For ChIP: Cell lysis was performed by incubation in cell lysis buffer (5 mM Pipes pH 8, 85 mM KCl, 0.5% IGEPAL® CA-630) followed by Dounce homogenization. Nuclei were harvested by centrifugation and incubated in nuclear lysis buffer: (50 mM Tris pH 8.1, 10 mM EDTA, 1% SDS) and sonicated 10 times for 10 s at a power setting of 5 and 50% duty cycle (Branson Sonifier 250). Samples were diluted 10 times in ChIP dilution buffer (16.7 mM Tris pH 8.1, 167 mM NaCl, 1.2 mM EDTA, 1.1% Triton X‐100, 0.01% SDS) and precleared using a mixture of protein A-agarose (Pierce) and protein G-sepharose (Sigma) previously blocked with BSA (Sigma). Precleared samples (200 μg) were incubated overnight at 4°C with indicated antibodies. Immune complexes were recovered by incubation with blocked protein A/protein G beads for 2 h at 4°C on a rotating wheel. Beads were washed once in dialysis buffer (50 mM Tris pH 8, 2 mM EDTA, 0.2% Sarkosyl), five times in wash buffer (100 mM Tris pH 8.8, 500 mM LiCl, 1% IGEPAL® CA-630, 1% NaDoc) and twice with TE (10mM Tris-HCl, pH 8, 1mM EDTA). Beads were resuspended in TE supplemented with 50µg/ml DNase-free RNase A (Abcam) and incubated for 30 minutes at 37°C. SDS (final concentration 0.5%) was added and crosslink was reversed by overnight incubation at 70°C. Following a 2 hours treatment with 200 µg/ml proteinase K (Roche) at 45°C, DNA was purified by phenol/chloroform extraction and recovered by ethanol precipitation in presence of 5 µg glycogen (Invitrogen). DNA pellet was resuspended in water. Prior to next-generation sequencing library preparation, samples from multiples ChIP experiments were pooled and sonicated for 5 cycles (30 seconds on, 30 seconds off, high setting) on a Bioruptor (Diagenode) then concentrated with a vacuum concentrator (Eppendorf). Antibodies: PER2 Proteintech 20359-1-AP (5µg), BMAL1 Abcam ab3350 (2µg), SUN1 Sigma HPA008346 (5µg), SUN2 Abcam ab124916 (5µg). For ChIP: Sequencing libraries were prepared from IP of PER2, BMAL1, SUN1 and SUN2 samples using the NEBNext® Ultra™ II Library Prep Kit (NEB)for Illumina.

characteristic: description

text: osteosarcoma

text: AsiSI-ER

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: School of Science, University of Malaga

text: public

tag: Namespace:School of Science, University of Malaga

text: inshore hagfish

text: HiC-seq data from the testis of a second hagfish individual, used to assist the suprascaffolding of the sample SAMEA104124530

text: Japan

characteristic: geographic location (country and/or sea)

text: Eptatretus burgeri

text: Eptatretus burgeri

text: Male

characteristic: sex

text: HiC-seq data from the testis of the hagfish Eptatretus burgeri