E-MTAB-12824:Sample 20

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 20

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 20


E-MTAB-12824:Sample 26

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 26

tag: Namespace:UNIVERSITY OF MANCHESTER

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: Protocols: Cells from kidney organoids were collected at day 0, 7, 12, 19 and 25 of the differentiation protocol. CRISPR/Cas9 gene editing was used to mutate HNF1B in MAN13 hESCs (PMID: 28583200). We first constructed a pair of plasmids expressing the nickase (D10A) version of Cas9 (Cas9 n ) and a gRNA each. The two gRNAs targeted the Cas9 n to nick at position 231 of the coding strand of HNF1B and at position 171 of the complementary strand, resulting in a deletion of 58 bases (plus/minus any indels) near the beginning of the coding sequence of the gene (Fig. 1A). Each gRNA-coding insert was designed as a pair of oligonucleotides that, upon annealing, produced overhangs that allowed cloning into the pX461 plasmid vector, (Addgene, #48140), under the control of a U6 promoter. The vector also expresses Cas9 n , and a GFP tag for cell sorting. The primers used to create the inserts are listed in Table S2. Each pair of oligonucleotides was annealed and phosphorylated, using T4 Polynucleotide Kinase (NEB, #M0201S), then ligated into BbsI-digested pX461, to produce pX461-gRNA(HNF1B/231+) and pX461-gRNA(HNF1B/177-). 4x10 5 MAN13 hESCs were nucleofected with both pX461-gRNA(HNF1B/231+) and pX461-gRNA(HNF1B/177-), using the AmaxaTM P3 Primary Cell 4D-NucleofectorTM X Kit L (Lonza, #V4XP-3024), in 100μl nucleofection buffer according to the manufacturer’s instructions, on a Lonza 4D-Nucleofector (program DN100). 1ml of TeSR1 medium, containing 10 μM ROCK inhibitor, was then added to the cell mix and the cells were plated on a well of a 12-well plate coated with Vitronectin. The medium was replaced 16h later with 1ml fresh TeSR1 medium. Two days post-nucleofection, the cells were collected by TrypLE treatment (Life Technlogies, #12605-028) for 2min at 37 o C and sorted for GFP fluorescence on a BD FACSAria Fusion flow cytometer. Two aliquots of the sorted, GFP+ cells of 5,000 and 10,000 cells were then plated in one Vitronectin-coated well each in a 6-well plate. The rest of the GFP+ cells (approximately 35,000) were plated on a separate well and – when confluent – they were stored in liquid N 2 , as backup. After 8-15 days, separate cell colonies had emerged on the sparsely seeded plates. Each was manually passaged, using a flame-pulled glass Pasteur pipette, into a separate well of a 24-well plate. Each clonal line thus produced was expanded further by EDTA passaging when confluent, and genomic DNA (gDNA) was extracted for genotyping using the Wizard® Genomic DNA Purification Kit (Promega, #A1120). A 781bp fragment around the expected mutation site was amplified by PCR, using Herculase II polymerase (Agilent, #600675) and was then sequenced to verify the presence/absence of the deletion. Of 21 clones isolated and sequenced, 3 were heterozygous mutants and one (IBM13-19) was studied further. This clone carried a frameshift in exon 1 (Fig. 1B) such that mutant mRNA would contain a premature stop codon 51 nucleotides downstream. A wild-type clone (IBM13-08) constituted an isogenic non-mutant control line. Samples were taken at time points in the differentiation of stem cells to organoids. The first differentiation steps occur in 2D over 7 days when dissociated cells are plated onto the air/medium interface of semipermeable membranes andthen maintained in 3D organoid culture for a further 18 days. Differentiation of cells into kidney in 2D and 3D (organoids) was performed as described previously (PMID: 29429961; PMID: 26444236), substituting APELTM with APELTM2 medium, supplemented with 1% (v/v) PFHM-II Protein-Free Hybridoma Medium (Thermo Fisher Scientific, # 11370882), hereafter referred to as APELTM2. For 2D differentiation, stem cells were plated on Vitronectin-coated plates, at a density of 18,000 cells cm -2 in culture medium containing 10μM Y-27632. The following day the medium was replaced with STEMdiffTM APELTM2 (StemCell Technologies, #05270), containing 8 μM CHIR-99021 (Tocris, #4423) for three days, followed by APELTM2 supplemented with 200 ng ml −1 FGF9 (Peprotech, #100-23) and 1 μg ml −1 heparin (Sigma, #3149) for a further 10 days. Subsequently, the cells were cultured in basal APELTM2 medium which was changed daily. For 3D organoid cultures was performed according as described (PMID: 26444236). Cells were differentiated for the first 7 days as in the 2D protocol above, except that APEL/CHIR-99021 medium was used for the first four days. On day 7, cells were dissociated with TrypLE. Aliquots of 2x10 5 cells were centrifuged at 400g for 2 min and the pellets were subsequently cultured on a medium-air interface by transfer onto a MilliCell cell culture insert (0.4μm pore size; Millipore, #PICM03050) inserted into the wells of 6-well plates. Upon transfer, the cells were exposed to APELTM2 medium containing 5μM CHIR-99021 for 1h, before reverting back to APELTM2 with FGF9/Heparin for a further 5 days. Finally, the 3D cultures were maintained in basal APELTM2 medium for up to another 13 days. Total RNA was extracted using the miRVana miRNA isolation kit (Thermo Fisher, AM1560) without using the optional miRNA-enriching protocol Truseq stranded mRNA Assay. Paired end.

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: CRISPR/Cas9 HNF1B mutation

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: Sample 26

characteristic: title


E-MTAB-12824:Sample 27

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 27

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 27


E-MTAB-12824:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 28

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 28


E-MTAB-12824:Sample 29

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 29

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 29


E-MTAB-12824:Sample 30

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 30

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

characteristic: disease

text: CRISPR/Cas9 HNF1B mutation

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: Sample 30


E-MTAB-12824:Sample 6

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12824:Sample 6

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 6

characteristic: title


E-MTAB-12824:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-12824:Sample 7

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 7


E-MTAB-12824:Sample 8

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

text: public

text: E-MTAB-12824:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo

text: normal

text: CRISPR/Cas9 HNF1B mutation

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 8


E-MTAB-12824:Sample 9

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12824:Sample 9

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: CRISPR/Cas9 HNF1B mutation

characteristic: genotype

text: organoid

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: Sample 9


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Escherichia coli

text: Shimwellia blattae

text: Shimwellia blattae


text: Escherichia coli

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: NIPH

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

characteristic: collection date

text: N. meningitidis

characteristic: common name

text: Norway

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: trachea secretions

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis


characteristic: External Id

text: NIPH

characteristic: INSDC last update

text: public

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

characteristic: description

text: Norway

text: not provided

text: Homo sapiens

characteristic: isolate

text: blood

text: Streptococcus pyogenes

text: Streptococcus pyogenes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIPH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: abscess

text: Streptococcus pyogenes

text: Streptococcus pyogenes


characteristic: ENA-LAST-UPDATE

text: NIPH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: expectorate

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: title


text: public

characteristic: NCBI Accession ID

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus

characteristic: common name

text: Portugal

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: Monkeypox virus

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Monkeypox virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PNRI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: baker's yeast

text: Sequencing of yOTC variant codons

characteristic: description

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

characteristic: strain

text: Pyrococcus furiosus control condition at 95�C replicate 1

characteristic: title


text: public

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus control condition at 95�C replicate 2


text: public

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus control condition at 95�C replicate 3


text: public

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus control condition at 95�C replicate 4


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 20 minutes. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 20 minutes at 4�C replicate 1


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 20 minutes. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 20 minutes at 4�C replicate 2


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 20 minutes. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 20 minutes at 4�C replicate 3


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 20 minutes. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 20 minutes at 4�C replicate 4


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 2 hours. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 2 hours at 4�C replicate 1


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 2 hours. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 2 hours at 4�C replicate 2


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 2 hours. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 2 hours at 4�C replicate 3


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 2 hours. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 2 hours at 4�C replicate 4


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 24 hours. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 24 hours at 4�C replicate 1


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 24 hours. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 24 hours at 4�C replicate 2


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 24 hours. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 24 hours at 4�C replicate 3


text: public

text: For cold shock treatment, cells in the mid-exponential phase (see Control samples) were subjected to cold shock by rapidly cooling the medium through a 2.5 m long, 2 mm diameter viton hose flushed with anaerobic NaCl solution into a new bottle containing 1 bar excess of nitrogen. Time at 4�C: 24 hours. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus cold shock 24 hours at 4�C replicate 4


text: public

text: For recovery, the ice bath was replaced with a 95�C hot water bath, and a recovery sample was collected 5 minutes after the target temperature of 95�C was achieved. Starting samples was cells grown to mid-exponential phase, then cold shocked at 4�C as described in the other samples. Recovery time: 5 minutes. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from cold shock 24 hours at 4�C replicate 1


text: public

text: For recovery, the ice bath was replaced with a 95�C hot water bath, and a recovery sample was collected 5 minutes after the target temperature of 95�C was achieved. Starting samples was cells grown to mid-exponential phase, then cold shocked at 4�C as described in the other samples. Recovery time: 5 minutes. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from cold shock 24 hours at 4�C replicate 2


text: public

text: For recovery, the ice bath was replaced with a 95�C hot water bath, and a recovery sample was collected 5 minutes after the target temperature of 95�C was achieved. Starting samples was cells grown to mid-exponential phase, then cold shocked at 4�C as described in the other samples. Recovery time: 5 minutes. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from cold shock 24 hours at 4�C replicate 3


text: public

text: For recovery, the ice bath was replaced with a 95�C hot water bath, and a recovery sample was collected 5 minutes after the target temperature of 95�C was achieved. Starting samples was cells grown to mid-exponential phase, then cold shocked at 4�C as described in the other samples. Recovery time: 5 minutes. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from cold shock 24 hours at 4�C replicate 4


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 5 minutes. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 5 minutes at 105�C replicate 1


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 5 minutes. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 5 minutes at 105�C replicate 2


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 5 minutes. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 5 minutes at 105�C replicate 3


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 5 minutes. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 5 minutes at 105�C replicate 4


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 15 minutes. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 15 minutes at 105�C replicate 1


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 15 minutes. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 15 minutes at 105�C replicate 2


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 15 minutes. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 15 minutes at 105�C replicate 3


text: public

text: For heat shock treatment, serum bottles with in the mid-exponential phase were placed in a 105�C incubator. It took 26 minutes for the cultures to reach the target temperature of 105�C, which was considered the starting point for the heat shock treatment. Samples were collected after 15 minutes. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus heat shock 15 minutes at 105�C replicate 4


text: public

text: For recovery, cultures were transferred to another incubator and allowed to cool down to 95�C, which took 10.5 minutes. Incubation time at 95�C: 5 minutes. Replicate 1

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from heat shock 15 minutes at 105�C replicate 1


text: public

text: For recovery, cultures were transferred to another incubator and allowed to cool down to 95�C, which took 10.5 minutes. Incubation time at 95�C: 5 minutes. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from heat shock 15 minutes at 105�C replicate 2


text: public

text: For recovery, cultures were transferred to another incubator and allowed to cool down to 95�C, which took 10.5 minutes. Incubation time at 95�C: 5 minutes. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from heat shock 15 minutes at 105�C replicate 3


text: public

text: For recovery, cultures were transferred to another incubator and allowed to cool down to 95�C, which took 10.5 minutes. Incubation time at 95�C: 5 minutes. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus 5 minutes recovery at 95�C from heat shock 15 minutes at 105�C replicate 4


text: public

tag: Namespace:Department of Molecular Microbiology John Innes Centre

text: ArrayExpress

characteristic: broker name

text: Protocols: Mycelial mass was harvested by centrifugation for 30 ml cultures grown overnight (14 hours). Streptomyces venezuelae NRRL B-65442 (Wild-type and BldB deletion strain both were grown in triplicates for in 30 ml shaken cultures at 30 degrees Celsius in the Maltose-Yeast extract-Malt Extract (MYM) medium supplemented with R2 trace element solution. The .bam files produced by aligning the reads to the genome were used as input to the featureCounts tool of the Bioconductor package Rsubread (version 2.0.0) along with a a .saf file containing coordinates of genes in the genome. This produced a table of counts of reads mapping to every gene in the genome. Mycelial pellets were washed with 1x PBS followed by lysis and RNA purification using the RNEasy kit (Quiagen). Purified RNA samples were treated with on-column DNase I (Qiagen), followed by an additional DNase I treatment (Turbo DNA-free, Invitrogen). rRNA depletion and Library construction were carried out by Genewiz (NJ, USA).

text: BldB deletion

characteristic: genotype

text: MYM medium

characteristic: growth condition

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: whole organism

characteristic: organism part

text: Streptomyces venezuelae

text: NRRL B-65442


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Molecular Microbiology John Innes Centre

text: public

text: ArrayExpress

text: BldB deletion

text: MYM medium

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: whole organism

text: Streptomyces venezuelae

text: NRRL B-65442


characteristic: External Id

characteristic: INSDC last update

text: public

text: ArrayExpress

text: wild type genotype

text: MYM medium

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: whole organism

text: Streptomyces venezuelae

text: NRRL B-65442


text: public

characteristic: INSDC status

tag: Namespace:Institute of Applied Biosciences, Centre for research and Technology Hellas

text: human

characteristic: common name

text: CLL Subset #201

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Homo Sapiens

characteristic: host scientific name

text: Homo sapiens

text: Homo sapiens

text: peripheral blood


characteristic: ENA-LAST-UPDATE

text: Institute of Applied Biosciences, Centre for research and Technology Hellas

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: human

text: CLL Subset #201

text: Greece

text: Homo Sapiens

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: peripheral blood


text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 1

text: Pyrococcus furiosus DSM 3638

characteristic: organism

text: Pyrococcus furiosus DSM 3638

characteristic: strain

text: Pyrococcus furiosus control condition at 95�C replicate 1


text: public

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 2

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus control condition at 95�C replicate 2

characteristic: title


characteristic: INSDC center name

text: public

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 3

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus control condition at 95�C replicate 3


characteristic: INSDC first public

text: public

text: Pyrococcus furiosus DSM 3638 was cultured in 120 ml serum bottles following the protocol previously described under anaerobic conditions at one bar excess of nitrogen (Gr�nberger et al., 2019). Cells were grown in 40 ml SME medium supplemented with 40 mM pyruvate, 0.1 % peptone and 0.1 % yeast extract for 15 hours at 95�C until they reached the mid-exponential phase with a cell density of 5 x 107 cells/ml. Replicate 4

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus DSM 3638

text: Pyrococcus furiosus control condition at 95�C replicate 4


text: WAGENINGEN UNIVERSITY

characteristic: INSDC last update

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

characteristic: collection date

text: Lacticaseibacillus rhamnosus culture grown in MRS plus glucose

text: Netherlands

text: Lacticaseibacillus rhamnosus

text: Lacticaseibacillus rhamnosus


text: WAGENINGEN UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lacticaseibacillus rhamnosus culture grown in MRS plus lactose

text: Netherlands

text: Lacticaseibacillus rhamnosus

text: Lacticaseibacillus rhamnosus


text: WAGENINGEN UNIVERSITY

text: public

characteristic: Submitter Id

text: Lacticaseibacillus rhamnosus culture grown in MRS plus mannose

text: Netherlands

text: Lacticaseibacillus rhamnosus

text: Lacticaseibacillus rhamnosus


text: WAGENINGEN UNIVERSITY

text: public

text: Lacticaseibacillus rhamnosus culture grown in milk

characteristic: description

text: Netherlands

text: Lacticaseibacillus rhamnosus

text: Lacticaseibacillus rhamnosus


text: WAGENINGEN UNIVERSITY

text: public

text: Lacticaseibacillus rhamnosus culture grown in MRS without sugar supplemetation

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Lacticaseibacillus rhamnosus

text: Lacticaseibacillus rhamnosus


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Stool

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Escherichia coli

text: Escherichia coli

text: O127 H6


E-MTAB-12835:Sample 1_WT

characteristic: External Id

text: E-Da Hospital, Kaohsiung, Taiwan

text: public

text: E-MTAB-12835:Sample 1_WT

tag: Namespace:E-Da Hospital, Kaohsiung, Taiwan

unit: week

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Skin tissues were collected from WT mice, and depigmented and pigmented skins of Ets-1 KO mice. Total RNA was harvested using Trizol reagent (Invitrogen) for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared using SureSelect Strand-Specific RNA Library Prep Kit (Agilent) following manufacturer's protocols, followed by AMPure XP beads (Beckman Coulter) for size selection.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: skin of abdomen

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1_WT


E-MTAB-12835:Sample 2_KOB

text: E-Da Hospital, Kaohsiung, Taiwan

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12835:Sample 2_KOB

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: Ets-1 -/-

text: Mus musculus

text: Mus musculus

text: skin of abdomen

text: wild type phenotype

text: Mus musculus

text: male

text: Sample 2_KOB

characteristic: title


E-MTAB-12835:Sample 3_KOW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: E-Da Hospital, Kaohsiung, Taiwan

text: public

text: E-MTAB-12835:Sample 3_KOW

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: Ets-1 -/-

text: Mus musculus

text: Mus musculus

text: skin of abdomen

text: depigmented skin

text: Mus musculus

text: male

text: Sample 3_KOW


text: Universidad nacional

text: public

tag: Namespace:Universidad nacional

text: cropland biome (ENVO:01000245)

characteristic: broad-scale environmental context

characteristic: collection date

text: 0.25 m

unit: m

characteristic: depth

text: conventional

characteristic: elevation

text: plant matter (ENVO:01001121) | mater (ENVO:00002006) | acidity of soil (ENVO:09200010) | mineral material (ENVO:01000256)

characteristic: environmental medium

text: Colombia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plant rhizosphere (ENVO:01000999)

characteristic: local environmental context

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome


characteristic: ENA-CHECKLIST

text: Universidad nacional

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cropland biome (ENVO:01000245)

text: 0.25 m

text: organic

characteristic: description

text: Colombia

text: Plant rhizosphere (ENVO:01000999)

text: soil metagenome

text: soil metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad nacional

text: public

text: cropland biome (ENVO:01000245)

characteristic: broad-scale environmental context

characteristic: collection date

text: 0.25 m

characteristic: depth

text: agroecological

characteristic: elevation

text: Colombia

text: Plant rhizosphere (ENVO:01000999)

text: soil metagenome

text: soil metagenome


text: Warwick University

text: public

tag: Namespace:Warwick University

text: not collected

text: Genomic DNA collected from RIAIL 1

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Auanema freiburgensis

characteristic: organism

text: Auanema freiburgensis

text: RIAIL 1


characteristic: ENA-CHECKLIST

text: Warwick University

characteristic: INSDC center name

text: public

text: not collected

text: Genomic DNA collected from RIAIL 2

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 2


text: Warwick University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

text: Genomic DNA collected from RIAIL 3

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 3


text: Warwick University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: Genomic DNA collected from RIAIL 4

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 4


text: Warwick University

text: public

characteristic: Submitter Id

text: not collected

text: Genomic DNA collected from RIAIL 5

characteristic: description

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 5


characteristic: ENA-FIRST-PUBLIC

text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 6

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 6

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 7

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 7


text: Warwick University

text: public

text: not collected

characteristic: collection date

text: Genomic DNA collected from RIAIL 8

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 8


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 9

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 9


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 10

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 10


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 11

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 11


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 12

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 12


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 13

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 13


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 14

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 14


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 15

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 15


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 16

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 16


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 17

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 17


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 18

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 18


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 19

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 19


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 20

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 20


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 21

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 21


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 22

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 22


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 23

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 23


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 24

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 24


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 25

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 25


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 26

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 26


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 27

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 27


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 28

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 28


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 29

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 29


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 30

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 30


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 31

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 31


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 32

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 32


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 33

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 33


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 34

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 34


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 35

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 35


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 36

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 36


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 37

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 37


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 38

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 38


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 39

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 39


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 40

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 40


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 41

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 41


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 42

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 42


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 43

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 43


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 44

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 44


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 45

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 45


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 46

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 46


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 47

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 47


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 48

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 48


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 49

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 49


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 50

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 50


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 51

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 51


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 52

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 52


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 53

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 53


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 54

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 54


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 55

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 55


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 56

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 56


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 57

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 57


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 58

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 58


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 59

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 59


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 60

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 60


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 61

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 61


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 62

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 62


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 63

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 63


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 64

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 64


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 65

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 65


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 66

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 66


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 67

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 67


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 68

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 68


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 69

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 69


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 70

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 70


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 71

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 71


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 72

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 72


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 73

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 73


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 74

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 74


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 75

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 75


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 76

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 76


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 77

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 77


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 78

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 78


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 79

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 79


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 80

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 80


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 81

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 81


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 82

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 82


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 83

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 83


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 84

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 84


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 85

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 85


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 86

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 86


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 87

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 87


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 88

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 88


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 89

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 89


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 90

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 90


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 91

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 91


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 92

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 92


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 93

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 93


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 94

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 94


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 95

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 95


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 96

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 96


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 97

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 97


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 98

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 98


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 99

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 99


text: Warwick University

text: public

text: not collected

text: Genomic DNA collected from RIAIL 100

text: United Kingdom

text: Auanema freiburgensis

text: Auanema freiburgensis

text: RIAIL 100


characteristic: GISAID Accession ID

text: public

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Lea Stauber, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230327_os_24/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230327_os_02/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230327_os_23/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Effrenium_voratum_CCMP421-Genome-10X-NovaSeq

tag: Namespace:Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland

text: Genomic DNA derived from Effrenium voratum CCMP421 cell culture for a 10X Linked Reads library sequenced on the NovaSeq6000 platform.

characteristic: description

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effreinum voratum genomic DNA 10X Linked Reads NovaSeq6000


text: Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Effrenium_voratum_RCC1521-Genome-PacBio-Sequel-II_CLR_01

characteristic: Submitter Id

text: Genomic DNA derived from Effrenium voratum RCC1521 cell culture for a PacBio SMRT library sequenced on the Sequel II platform.

text: Australia

characteristic: geographic location (country and/or sea)

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum RCC1521 genomic DNA PacBio SMRT Sequel II CLR


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Effrenium_voratum_RCC1521-Genome-PacBio-Sequel-II_CLR_02

text: Australia

text: Effrenium voratum

characteristic: organism

text: Effrenium voratum


text: public

text: Effrenium_voratum_RCC1521-Genome-Nanopore-MinION

text: Genomic DNA derived from Effrenium voratum RCC1521 cell culture for a Nanopore library sequenced on the MinION platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum RCC1521 genomic DNA Nanopore MinION


text: public

text: Effrenium_voratum_RCC1521-Genome-Illumina-NovaSeq

text: Genomic DNA derived from Effrenium voratum RCC1521 cell culture for an Illumina TruSeq library sequenced on the NovaSeq6000 platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum RCC1521 genomic DNA Illumina NovaSeq


text: public

text: Effrenium_voratum_RCC1521-Transcriptome-PacBio-IsoSeq-Sequel-II

text: Transcriptomic RNA derived from Effrenium voratum RCC1521 cell culture for a PacBio SMRT Iso-Seq library sequenced on the Sequel II platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum RCC1521 transcriptomic RNA PacBio SMRT Sequel II IsoSeq


text: public

text: Effrenium_voratum_RCC1521-Transcriptome-Illumina-RNASeq-NovaSeq-PE100

text: Transcriptomic RNA derived from Effrenium voratum RCC1521 cell culture for a 100 bp PE Illumina RNA-Seq library sequenced on the NovaSeq6000 platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum RCC1521 transcriptomic RNA Illumina RNASeq NovaSeq


text: Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland

text: public

text: Effrenium_voratum_RCC1521-Transcriptome-Illumina-RNASeq-NovaSeq-PE150

text: Transcriptomic RNA derived from Effrenium voratum RCC1521 cell culture for a 150 bp PE Illumina RNA-Seq library sequenced on the NovaSeq6000 platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum


text: public

text: Effrenium_voratum_rt383-Genome-PacBio-Sequel-II_CCS_01

text: Genomic DNA derived from Effrenium voratum rt-383 cell culture for a PacBio SMRT library sequenced on the Sequel II platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum rt-383 genomic DNA PacBio SMRT Sequel II HiFi CCS


text: public

text: Effrenium_voratum_rt383-Genome-PacBio-Sequel-II_CCS_02

text: Australia

text: Effrenium voratum

text: Effrenium voratum


text: public

text: Effrenium_voratum_rt383-Genome-Nanopore-MinION_UNSHEARED

text: Genomic DNA derived from Effrenium voratum rt-383 cell culture for a Nanopore library sequenced on the MinION platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum rt-383 genomic DNA Nanopore MinION


text: public

text: Effrenium_voratum_rt383-Genome-Nanopore-MinION_SHEARED

text: Australia

text: Effrenium voratum

text: Effrenium voratum


text: public

text: Effrenium_voratum_rt383-Genome-Nanopore-PromethION

text: Genomic DNA derived from Effrenium voratum rt-383 cell culture for a Nanopore library sequenced on the PromethION platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum rt-383 genomic DNA Nanopore PromethION


text: public

text: Effrenium_voratum_rt383-Genome-Illumina-NovaSeq-PairA

text: Genomic DNA derived from Effrenium voratum RCC1521 cell culture for an Illumina TruSeq library sequenced on the NovaSeq6000 platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum rt-383 genomic DNA Illumina NovaSeq


text: Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland

text: public

text: Effrenium_voratum_rt383-Genome-Illumina-NovaSeq-PairB

text: Australia

text: Effrenium voratum

text: Effrenium voratum


text: public

text: Effrenium_voratum_rt383-Transcriptome-PacBio-IsoSeq-Sequel-II

text: Transcriptomic RNA derived from Effrenium voratum rt-383 cell culture for a PacBio SMRT Iso-Seq library sequenced on the Sequel II platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum rt-383 transcriptomic RNA PacBio SMRT Sequel II IsoSeq


text: public

text: Effrenium_voratum_rt383-Transcriptome-Illumina-RNASeq-NovaSeq-PE100

text: Transcriptomic RNA derived from Effrenium voratum rt-383 cell culture for 100 bp PE Illumina RNA-Seq library sequenced on the NovaSeq6000 platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum

text: Effrenium voratum rt-383 transcriptomic RNA Illumina RNASeq NovaSeq


text: public

text: Effrenium_voratum_rt383-Transcriptome-Illumina-RNASeq-NovaSeq-PE150

text: Transcriptomic RNA derived from Effrenium voratum rt-383 cell culture for a 150 bp PE Illumina RNA-Seq library sequenced on the NovaSeq6000 platform.

text: Australia

text: Effrenium voratum

text: Effrenium voratum


text: INRAE DE TOURS

text: public

tag: Namespace:INRAE DE TOURS

characteristic: collection date

text: Turbid clone

text: France

text: healthy

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Isolate 180.10

characteristic: isolate

text: In vivo trial chicken gut microbiota

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

characteristic: serovar

text: LA5 775

characteristic: strain

text: Isolate 180.10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRAE DE TOURS

characteristic: INSDC center name

text: public

text: Sensible clone

text: France

text: healthy

text: Gallus gallus

text: Isolate 180.10.1

text: In vivo trial chicken gut microbiota

text: Enteritidis

text: LA5 775

text: Isolate 180.10.1

characteristic: title


text: INRAE DE TOURS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Turbid clone

characteristic: description

text: France

text: healthy

text: Gallus gallus

text: Isolate 191

text: In vivo trial chicken gut microbiota

text: Enteritidis

text: LA5 775

text: Isolate 191


characteristic: ENA-LAST-UPDATE

text: INRAE DE TOURS

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sensible clone

text: France

characteristic: geographic location (country and/or sea)

text: healthy

text: Gallus gallus

text: Isolate 191.7

text: In vivo trial chicken gut microbiota

text: Enteritidis

text: LA5 775

text: Isolate 191.7


characteristic: External Id

text: INRAE DE TOURS

text: public

characteristic: collection date

text: Turbid clone

text: France

text: healthy

characteristic: host health state

text: Gallus gallus

text: Isolate 191.9

text: In vivo trial chicken gut microbiota

characteristic: organism

text: Enteritidis

text: LA5 775

text: Isolate 191.9


text: INRAE DE TOURS

text: public

text: Resistant clone

text: France

text: healthy

text: Gallus gallus

characteristic: host scientific name

text: Isolate 191.10

characteristic: isolate

text: In vivo trial chicken gut microbiota

text: Enteritidis

characteristic: serovar

text: LA5 775

characteristic: strain

text: Isolate 191.10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Mpumalanga

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Reading

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Dublin

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Free State

text: Human, Rectal swab

text: Salmonella enterica

text: Salmonella enterica

text: Irumu


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

characteristic: geographic location

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Mpumalanga

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Dublin


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Panama


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Irumu


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Bovismorbificans

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Durban


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Limpopo

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Agona


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Kisangani


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Eastern Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Bovismorbificans


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Heidelberg


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Chester


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Newport

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Mpumalanga

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Limpopo

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Mpumalanga

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Anatum

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Molade


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Dublin


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Newport


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis