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text: BEMT

text: PCR

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: scientific name

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CB17.03 from cage CB17 with treatment CC

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CB19.12 from cage CB19 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Prior Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: scientific name

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CB24.11 from cage CB24 with treatment CO

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IHU - Mediterranee Infection

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IHU - Mediterranee Infection

characteristic: Submitter Id

text: stool

characteristic: isolation source

text: Agathobaculum sp. Marseille-P4005

characteristic: organism

text: Agathobaculum sp. Marseille-P4005

characteristic: scientific name

characteristic: strain

text: Agathobaculum massiliense genome

characteristic: title


E. coli_194855

text: Cantacuzino NIMMRD

text: public

text: E. coli_194855

tag: Namespace:Cantacuzino NIMMRD

characteristic: collection date

text: Romania

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: E. coli_194855

characteristic: isolate

text: Human faces

text: Escherichia coli O157:H7

text: Escherichia coli O157:H7

characteristic: serovar

text: E. coli_194855


E. coli_197826

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cantacuzino NIMMRD

characteristic: INSDC center name

text: public

text: E. coli_197826

text: Romania

text: diseased

text: Homo sapiens

text: E. coli_197826

text: Human faces

text: Escherichia coli O157:H7

text: Escherichia coli O157:H7

text: E. coli_197826


E. coli_199687

text: Cantacuzino NIMMRD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E. coli_199687

characteristic: Submitter Id

text: Romania

text: diseased

text: Homo sapiens

text: E. coli_199687

text: Human faces

text: Escherichia coli O157:H7

text: Escherichia coli O157:H7

text: E. coli_199687


E. coli_213666

text: Cantacuzino NIMMRD

text: public

text: E. coli_213666

text: Romania

text: diseased

text: Homo sapiens

text: E. coli_213666

text: Human faces

characteristic: isolation source

text: Escherichia coli O157:H7

characteristic: organism

text: Escherichia coli O157:H7

characteristic: scientific name

text: E. coli_213666

characteristic: title


text: UNIVERSITY OF COPENHAGEN

text: public

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: main associated run/experiment: ERR7184420/ERX6754031, merged from ERR6352866/ERX5984441 and ERR6800903/ERX6424524 (linked to this sample as well); Chicken gut metagenomic data from Caecum content; animal CA02.01 from cage CA02 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Extreme Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: CA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: main associated run/experiment: ERR7184419/ERX6754030, merged from ERR6352799/ERX5984374 and ERR6746615/ERX6370673 (linked to this sample as well); Chicken gut metagenomic data from Caecum content; animal CA03.17 from cage CA03 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Extreme Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: scientific name

characteristic: title

value: Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: main associated run/experiment: ERR7184418/ERX6754029, merged from ERR6352808/ERX5984383 and ERR6800893/ERX6424514 (linked to this sample as well); Chicken gut metagenomic data from Caecum content; animal CA10.06 from cage CA10 with treatment CC

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Extreme Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: HoloFood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIAB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: single spore isolate derived from bulk isolate obtained from infected foliage of Matthiola incana

characteristic: description

text: Lincolnshire, UK

characteristic: geographic location (region and locality)

characteristic: isolate

text: sporangia on leaf surface

characteristic: isolation source

text: Peronospora matthiolae

characteristic: organism

text: Peronospora matthiolae

characteristic: scientific name

text: P. matthiolae single spore isolate pm1

characteristic: title


characteristic: ENA-CHECKLIST

text: NIAB

text: public

text: single spore isolate derived from bulk isolate obtained from infected foliage of Ocimum basilicum

text: Italy

text: sporangia on leaf surface

text: Peronospora belbahrii

text: Peronospora belbahrii

text: P. belbahrii single spore isolate pbs1


characteristic: ENA-FIRST-PUBLIC

text: NIAB

text: public

text: Italy

text: sporangia on leaf surface

text: Peronospora belbahrii

text: Peronospora belbahrii

text: P. belbahrii single spore isolate pbs3


characteristic: ENA-LAST-UPDATE

text: NIAB

text: public

text: bulk isolate obtained from infected foliage of Beta vulgaris

text: Norfolk, UK

text: sporangia on leaf surface

text: Peronospora farinosa

text: Peronospora farinosa

text: P. farinosa bulk isolate pf1


text: E. coli

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

text: E. coli

characteristic: common name

text: Escherichia coli

text: Escherichia coli

characteristic: subject id


text: Klebsiella pneumoniae

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

characteristic: SRA accession

tag: Namespace:Centre for Genome-Enabled Biology and Medicine

characteristic: Submitter Id

text: Donor 3, Beetroot AIR, harvested at 24 hours

characteristic: description

text: human gut metagenome

text: human gut metagenome


text: Centre for Genome-Enabled Biology and Medicine

text: public

text: Donor 3, Beetroot AIR, harvested at 48 hours

text: human gut metagenome

characteristic: organism

text: human gut metagenome


text: public

text: human gut metagenome

text: human gut metagenome

characteristic: scientific name


text: public

text: Donor 3, Beet leaf AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Donor 3, Beet leaf AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: Donor 3, Recombined cell wall, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: Donor 3, Kale AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Apple AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Kale AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Bean hull AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Wheat bran FM, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Recombined cell wall, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Carrot Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Carrot Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Beetroot Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Beetroot Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Beet leaf Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Beet leaf Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: Centre for Genome-Enabled Biology and Medicine

text: public

text: Donor 3, Kale Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Apple Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Inulin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, NO CHO, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, NO CHO, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Apple AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Wheat bran AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Wheat bran FM, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Recombined cell wall, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Recombined cell wall, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beetroot Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beetroot Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beet leaf Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beet leaf Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: Centre for Genome-Enabled Biology and Medicine

text: public

text: Donor 1, Kale Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Apple Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Inulin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, NO CHO, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, NO CHO, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Wheat bran AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Carrot AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Carrot AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beetroot AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beetroot AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beetroot AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beetroot AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beet leaf AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beet leaf AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Kale AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Apple AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Bean hull AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Wheat bran FM, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Recombined cell wall, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: Centre for Genome-Enabled Biology and Medicine

text: public

text: Donor 2, Recombined cell wall, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Carrot Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Carrot Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beetroot Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beetroot Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beet leaf Pectin, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Beet leaf Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beet leaf AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Beet leaf AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Kale Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Apple Pectin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Inulin, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, NO CHO, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, NO CHO, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, Wheat bran AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Carrot AIR, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, Carrot AIR, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, D1slurry, harvested at 0 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 2, D2slurry, harvested at 0 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 3, D3Slurry, harvested at 0 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, slurry, harvested at 0 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: negative control, negative control, harvested at control

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, No CHO, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, NO CHO, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR supernatant , harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: Centre for Genome-Enabled Biology and Medicine

text: public

text: Donor 1, Carrot AIR wash 1, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR wash 2, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR pellet, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR supernatant , harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR wash 1, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR wash 2, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Carrot AIR pellet, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR supernatant , harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR wash 1, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR wash 2, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR pellet, harvested at 24 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR supernatant , harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR wash 1, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR wash 2, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


text: public

text: Donor 1, Bean hull AIR pellet, harvested at 48 hours

text: human gut metagenome

text: human gut metagenome


positive

text: public

text: positive

text: positive control, positive control, harvested at control

text: human gut metagenome

text: human gut metagenome

text: positive


text: Centre for Genome-Enabled Biology and Medicine

text: public

text: human gut metagenome

text: human gut metagenome


text: public

tag: Namespace:GFZ German Research Centre for Geosciences

characteristic: collection date

text: lake sediment of thermokarst lake, Bykovsky Peninsula, Siberian Arctic

text: arctic lake sediment biome

characteristic: environment (biome)

text: degrading permafrost

characteristic: environment (feature)

text: themokarst lake sediment

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: Arctic thermokarst lake to lagoon transition and its impact on microbiomes and methane output

characteristic: project name

text: metagenome

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: External Id

text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: common name

characteristic: description

text: arctic lake sediment biome

text: degrading permafrost

text: themokarst lake sediment

text: Russia

text: mimarks-survey

text: metagenome

characteristic: organism

text: metagenome

characteristic: scientific name

text: Illumina MiSeq v3 2x300

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: collection date

text: lake sediment of thermokarst lagoon, Bykovsky Peninsula, Siberian Arctic

text: arctic lake sediment biome

characteristic: environment (biome)

text: degrading permafrost

characteristic: environment (feature)

text: themokarst lake sediment

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: metagenome

text: metagenome

text: Illumina MiSeq v3 2x300

text: soil


characteristic: External Id

text: AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:AstraZeneca R&D

characteristic: Submitter Id

text: 6 to 8

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Single cell suspension was prepared from lungs using the mouse lung dissociation kit (Miltenyi Biotec) and passed through a 70µm strainer. Cells were labelled with fluorochrome conjugated antibodies and different cell populations were sorted in RLTplus buffer (Qiagen) using BD FACS ARIAIII and FACS DIVA software (BD Biosciences). For sorting of tetramer (NP) positive cells, single cell suspensions from lungs were enriched for CD8+ T cells using EasySep™ Mouse CD8+ T Cell Isolation Kit (Stem Cell technologies) prior to staining with antibodies. 6-8 weeks old Balb/cJRj mice (Janvier Labs) were subjected to intranasal (i.n.) sensitization/challenge regimen over a span of three weeks using house dust mite (HDM) extract from Dermatophagoides pteronyssinus (Stallergenes Greer, USA). In the first and third week, the mice were sensitized/challenged with 25mg of HDM extract in 20ml of phosphate-buffered saline (PBS) daily for 5 consecutive days. 21 days after the last HDM dose, the mice were immunized once with a sublethal dose of X47 H3N2 flu virus (0.1LD50, 1 PFU in 30ml of PBS) or PBS only as control via the i.n. route. Control groups of mice that were only sensitized/challenged with HDM, only immunized with X47 H3N2 flu virus or PBS-treated controls were also included. Seven weeks after the immunization with X47 (day 87), mice were sacrificed to study influenza- and HDM-specific memory immune responses. Total RNA was extracted from sorted T cell population using RNeasy plus micro kit (Qiagen) following manufacturer’s instructions Libraries were generated using QIAseq FX single cell RNA library kit (Qiagen) according to manufacturer’s instructions. Libraries were validated on the Fragment Analyzer platform (AATI) and concentrations were determined using the Quant-iT dsDNA HS assay kit on the Qubit fluorometer (Thermo Fisher Scientific) as well as with qPCR using QIAseq Library Quant Assay kit.

text: adult

characteristic: developmental stage

text: Influenza A virus (A/X-47(H3N2))

characteristic: infect

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tetramer (NP) positive

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

text: house dust mite

characteristic: stimulus

text: Balb/cJRj

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AstraZeneca R&D

characteristic: INSDC center name

text: public

text: 6 to 8

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

characteristic: description

text: adult

text: Influenza A virus (A/X-47(H3N2))

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

characteristic: scientific name

text: female

text: house dust mite

text: Balb/cJRj

characteristic: title


text: AstraZeneca R&D

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD4-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: PBS

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: female

text: house dust mite

text: Balb/cJRj


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: AstraZeneca R&D

text: public

text: 6 to 8

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

text: adult

characteristic: developmental stage

text: PBS

characteristic: infect

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: house dust mite

characteristic: stimulus

text: Balb/cJRj

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 6 to 8

text: ArrayExpress

text: CD4-positive, alpha-beta T cell

text: house mouse

characteristic: description

text: adult

text: Influenza A virus (A/X-47(H3N2))

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

characteristic: scientific name

text: female

text: PBS

text: Balb/cJRj

characteristic: title


text: AstraZeneca R&D

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: Influenza A virus (A/X-47(H3N2))

text: Mus musculus

text: Mus musculus

text: lung

text: tetramer (NP) positive

characteristic: phenotype

text: Mus musculus

text: female

text: PBS

text: Balb/cJRj


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AstraZeneca R&D

text: public

text: 6 to 8

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

text: adult

characteristic: developmental stage

text: Influenza A virus (A/X-47(H3N2))

characteristic: infect

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: PBS

characteristic: stimulus

text: Balb/cJRj

characteristic: strain


characteristic: External Id

text: AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6 to 8

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

characteristic: description

text: adult

text: PBS

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

characteristic: scientific name

text: female

text: PBS

text: Balb/cJRj

characteristic: title


E-MTAB-11793:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute

text: public

characteristic: SRA accession

text: E-MTAB-11793:Sample 12

tag: Namespace:Beatson Institute

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Subpopulations of a prostate cancer cell line (PC-3) where generated according to differential cortical levels of the transmembrane protein Podocalyxin. RNA was extracted using the RNeasy kit (Qiagen) including a DNase digestion step using RNase-Free DNase Set (Qiagen), as per manufacturers instructions, followed by reverse transcription by using High-Capacity cDNA Reverse Transcription kit (Thermo Fisher Scientific). Libraries were then prepared using manufacturers standard procedures (Illumina TruSeq stranded mRNA).

text: adult

text: prostate cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: high surface Podocalyxin

characteristic: phenotype

text: Homo sapiens

text: Sample 12


E-MTAB-11793:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute

characteristic: INSDC center name

text: public

text: E-MTAB-11793:Sample 3

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: prostate cancer

text: Homo sapiens

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: high surface Podocalyxin

text: Homo sapiens

text: Sample 3


E-MTAB-11793:Sample 6

text: Beatson Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11793:Sample 6

text: ArrayExpress

text: human

characteristic: description

text: adult

text: prostate cancer

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

text: high surface Podocalyxin

text: Homo sapiens

text: Sample 6


E-MTAB-11793:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute

text: public

characteristic: SRA accession

text: E-MTAB-11793:Sample 9

text: ArrayExpress

text: human

text: adult

text: prostate cancer

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: high surface Podocalyxin

text: Homo sapiens

characteristic: scientific name

text: Sample 9

characteristic: title


E-MTAB-11793:Sample 11

text: Beatson Institute

text: public

text: E-MTAB-11793:Sample 11

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: adult

text: prostate cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: low surface Podocalyxin

text: Homo sapiens

text: Sample 11


E-MTAB-11793:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute

characteristic: INSDC center name

text: public

text: E-MTAB-11793:Sample 2

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: prostate cancer

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: low surface Podocalyxin

characteristic: phenotype

text: Homo sapiens

text: Sample 2


E-MTAB-11793:Sample 5

text: Beatson Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11793:Sample 5

text: ArrayExpress

text: human

characteristic: description

text: adult

text: prostate cancer

text: Homo sapiens

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: low surface Podocalyxin

text: Homo sapiens

text: Sample 5


E-MTAB-11793:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute

text: public

characteristic: SRA accession

text: E-MTAB-11793:Sample 8

text: ArrayExpress

text: human

text: adult

text: prostate cancer

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

text: low surface Podocalyxin

text: Homo sapiens

characteristic: scientific name

text: Sample 8


E-MTAB-11793:Sample 1

text: Beatson Institute

text: public

text: E-MTAB-11793:Sample 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: adult

text: prostate cancer

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: parental

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-11793:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute

characteristic: INSDC center name

text: public

text: E-MTAB-11793:Sample 10

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: prostate cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: parental

text: Homo sapiens

text: Sample 10


E-MTAB-11793:Sample 4

text: Beatson Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11793:Sample 4

text: ArrayExpress

text: human

characteristic: description

text: adult

text: prostate cancer

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: parental

characteristic: phenotype

text: Homo sapiens

text: Sample 4


E-MTAB-11793:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute

text: public

characteristic: SRA accession

text: E-MTAB-11793:Sample 7

text: ArrayExpress

text: human

text: adult

text: prostate cancer

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: parental

text: Homo sapiens

text: Sample 7


text: public

tag: Namespace:BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Asaia bogorensis

characteristic: organism

text: Asaia bogorensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bifidobacterium breve

characteristic: organism

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Flavobacterium psychrophilum

characteristic: project name

characteristic: sample derived from

text: Flavobacterium psychrophilum

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Nitrosovibrio sp. Nv4

characteristic: project name

characteristic: sample derived from

text: Nitrosovibrio sp. Nv4

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Proteobacteria; Alphaproteobacteria; Holosporales; Candidatus Paracaedibacteraceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Finniella inopinata

characteristic: organism

text: Candidatus Finniella inopinata

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingomonas paucimobilis

characteristic: project name

characteristic: sample derived from

text: Sphingomonas paucimobilis

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Verrucomicrobia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Akkermansia muciniphila

characteristic: organism

text: Akkermansia muciniphila

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Crocinitomicaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Lishizhenia tianjinensis

characteristic: organism

text: Lishizhenia tianjinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Actinobacteria; Actinobacteria; Actinomycetales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Actinomyces viscosus

characteristic: project name

characteristic: sample derived from

text: Actinomyces viscosus

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Alphaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Bacteroidetes; Sphingobacteriia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingobacterium thalpophilum

characteristic: project name

characteristic: sample derived from

text: Sphingobacterium thalpophilum

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chryseobacterium gleum

characteristic: organism

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Gammaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Klebsiella pneumoniae

characteristic: project name

characteristic: sample derived from

text: Klebsiella pneumoniae

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Actinobacteria; Actinobacteria; Candidatus Nanopelagicales; Candidatus Nanopelagicaceae; Candidatus Planktophila

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Planktophila lacus

characteristic: organism

text: Candidatus Planktophila lacus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Flavobacterium psychrophilum

characteristic: organism

text: Flavobacterium psychrophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: MEGAHIT; kmer set 49,69,89,109,129,149

text: coverage and kmer

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Limnohabitans

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

characteristic: isolation source

text: freshwater metagenome

characteristic: metagenomic source

text: Limnohabitans sp. Rim8

characteristic: project name

characteristic: sample derived from

text: Limnohabitans sp. Rim8

characteristic: scientific name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT; kmer set 49,69,89,109,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

text: Bacteria; Cyanobacteria; ; Synechococcales; Synechococcaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title