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characteristic: ENA-LAST-UPDATE

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CB10.16 from cage CB10 with treatment CC

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Caecum mucosa

text: Ross

text: Chicken

text: Control

text: Campylobacter:-;Salmonella:-;Clostridium:-

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

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text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

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status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

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characteristic: INSDC status

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characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

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characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Campylobacter:NS;Salmonella:NS;Clostridium:NS

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

unit: °C

characteristic: host storage container temperature

characteristic: host subject id

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text: BEMT

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text: D-rex protocol

text: Gallus gallus

characteristic: organism

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text: Gallus gallus

characteristic: scientific name

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characteristic: title

unit: day

type: EXTERNAL LINKS

type: BIOGENIC AMINES

type: SAMPLE

value: Experiment

value: transcriptomics

value: Sample code

value: Body site

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value: Organism

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value: Project

value: HoloFood

type: TRIAL

value: Trial code

value: CB


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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characteristic: host taxid

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characteristic: sequencing method

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value: Trial start

value: Trial end


characteristic: ENA-CHECKLIST

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characteristic: host body site

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characteristic: host breed

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characteristic: host diet treatment

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characteristic: title

value: Trial description

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text: Caecum mucosa

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: host body site

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characteristic: host diet treatment

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characteristic: ENA-CHECKLIST

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text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC08.02 from cage CC08 with treatment CC

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CC08.02 from cage CC08 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

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characteristic: title

value: caecum mucosa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC08.05 from cage CC08 with treatment CC

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Control

text: Campylobacter:NS;Salmonella:NS;Clostridium:NS

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

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text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

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text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CC08.05 from cage CC08 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title

value: Trial start


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC09.01 from cage CC09 with treatment CO

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

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text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC11.10 from cage CC11 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Campylobacter:+;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC12.06 from cage CC12 with treatment CE

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Prebiotic

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Trial end


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CC12.06 from cage CC12 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC12.11 from cage CC12 with treatment CE

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Prebiotic

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CC13.17 from cage CC13 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC16.06 from cage CC16 with treatment CO

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Trial description


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CC16.08 from cage CC16 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CC18.11 from cage CC18 with treatment CO

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Caecum mucosa

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CC21.08 from cage CC21 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IAI - Institu des Agents Infectieux

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IAI - Institu des Agents Infectieux

characteristic: Submitter Id

characteristic: collection date

text: cultured strain

characteristic: description

text: France

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: isolate

text: Bronchoalveolar lavage fluid

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: Pleural fluid

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: scientific name

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IAI - Institu des Agents Infectieux

characteristic: INSDC center name

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Tracheobronchial aspiration

text: Staphylococcus aureus

text: Staphylococcus aureus


text: IAI - Institu des Agents Infectieux

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Blood culture

text: Staphylococcus aureus

text: Staphylococcus aureus


text: IAI - Institu des Agents Infectieux

text: public

characteristic: collection date

text: cultured strain

characteristic: description

text: France

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: isolate

text: Nasal and perineal swab

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus


text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: Catheter

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: scientific name

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Respiratory sample

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title


text: IAI - Institu des Agents Infectieux

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Sputum

text: Staphylococcus aureus

text: Staphylococcus aureus


text: IAI - Institu des Agents Infectieux

text: public

characteristic: Submitter Id

characteristic: collection date

text: cultured strain

characteristic: description

text: France

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: isolate

text: Protected distal sampling

text: Staphylococcus aureus

text: Staphylococcus aureus


text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: Tracheal aspiration

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: scientific name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: not provided

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: IAI - Institu des Agents Infectieux

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Brush

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title


text: IAI - Institu des Agents Infectieux

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: cultured strain

characteristic: description

text: France

text: not provided

characteristic: host health state

text: Homo sapiens

text: Mini-bronchoalveolar lavage fluid

text: Staphylococcus aureus

text: Staphylococcus aureus


text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: pulmonary abscess

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Pulmonary sample

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: scientific name


text: IAI - Institu des Agents Infectieux

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: strain (???)

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: IAI - Institu des Agents Infectieux

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: cultured strain

characteristic: description

text: France

text: not provided

text: Homo sapiens

text: Bronchial aspiration

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title


text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Bronchoalveolar lavage fluid

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Pleural fluid

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


text: IAI - Institu des Agents Infectieux

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Tracheobronchial aspiration

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: scientific name


text: IAI - Institu des Agents Infectieux

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: cultured strain

characteristic: description

text: France

text: not provided

text: Homo sapiens

text: Blood culture

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Bronchopulmonary swab

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under dark conditions in exponential growth phase

text: Non-axenic Prochlorococcus marinus str. MIT 9301 isolate

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase

text: Prochlorococcus marinus str. MIT 9301

characteristic: organism

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Transcriptomic sample of MIT9301 strain acclimated at 20�C collected under dark conditions in exponential growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301

characteristic: scientific name


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 20�C collected under light conditions in exponential growth phase

characteristic: description

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 25�C collected under dark conditions in exponential growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 25�C collected under light conditions in exponential growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under dark conditions in exponential growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase; unamended, time 0 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase; unamended, time 0 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase; unamended, time 0 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase; unamended, time 1 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 1 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase; unamended, time 2 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 2 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase; unamended, time 3 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 3 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase; unamended, time 4 in decay experiments.

text: Non-axenic Prochlorococcus marinus str. MIT 9301 isolate

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 22�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 4 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase; unamended, time 1 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 1 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase; unamended, time 2 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 2 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase; unamended, time 3 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 3 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase; unamended, time 1 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 1 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase; unamended, time 2 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 2 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase; unamended, time 3 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in exponential growth phase after the addition of rifampicine; time 3 in decay experiments.

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 17�C collected under light conditions in stationary growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 25�C collected under light conditions in stationary growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301


text: AZTI

text: public

text: Transcriptomic sample of MIT9301 strain acclimated at 30�C collected under light conditions in stationary growth phase

text: Prochlorococcus marinus str. MIT 9301

text: Prochlorococcus marinus str. MIT 9301