characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: Poland

text: Biebrza Valley | near Mścichy village

text: wet meadow

characteristic: habitat

text: JUSTYNA KUBACKA

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: Poland | Biebrza Valley | near Mścichy village

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 03

text: N

text: f704c443-eaf4-486a-804f-2e1b8b3606a6-ERGA-specimen

characteristic: title

characteristic: tolid


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: MUSEUM AND INSTITUTE OF ZOOLOGY, POLISH ACADEMY OF SCIENCES | NATURE RESEARCH CENTRE

characteristic: collecting institution

characteristic: collection date

text: 0000-0003-1211-8324 | 0000-0002-4714-0305

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: fen

text: JUSTYNA KUBACKA

text: Museum and Institute of Zoology, Polish Academy of Sciences

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: Poland | Biebrza Valley | Biebrza National Park | Ławki Mire

text: ERGA

text: N

text: mist-netted by nest and blood-sampled through brachial venepuncture; blood placed immediately in tube with EDTA and frozen in liquid nitrogen

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 01

text: N

text: 036f128d-2063-4962-912f-b5ce58be35b3-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: Poland

text: Biebrza Valley | Biebrza National Park | Ławki Mire

text: fen

characteristic: habitat

text: JUSTYNA KUBACKA

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: BLOOD

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 01

text: N

text: c77c375d-eb41-4a6d-a7f4-cff6bb27bf17-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: fen

text: JUSTYNA KUBACKA

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: ERGA

text: N

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 01

text: N

text: d499d4fb-2b8a-4acb-8bdc-1748d6504c6d-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: Poland

text: fen

characteristic: habitat

text: JUSTYNA KUBACKA

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: BLOOD

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 01

text: N

text: d230293b-d0dc-4a9e-8d84-2261b8e6a221-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: fen

text: JUSTYNA KUBACKA

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: ERGA

text: N

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 01

text: N

text: 5a658426-2b29-4907-bd5d-48c25788d9a3-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: Poland

text: fen

characteristic: habitat

text: JUSTYNA KUBACKA

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: BLOOD

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 01

text: N

text: f02015c5-ee03-4abd-8689-5166aaf7ad86-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: fen

text: JUSTYNA KUBACKA

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: ERGA

text: N

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 01

text: N

text: f9c54ecd-2f09-4db6-83f4-6cfde046293f-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 01

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: Poland

text: fen

characteristic: habitat

text: JUSTYNA KUBACKA

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: BLOOD

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 01

text: N

text: 251c44cd-c2bb-42a7-9839-f211aeffeab5-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 02

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: fen

text: JUSTYNA KUBACKA

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: ERGA

text: N

text: mist-netted by nest and blood-sampled through brachial venepuncture; blood placed immediately in 96% cooled ethanol and frozen in liquid nitrogen

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 02

text: N

text: 3d8eae9d-c3dc-40a8-a43a-0c47fd52c905-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 02

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: Poland

text: fen

characteristic: habitat

text: JUSTYNA KUBACKA

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: BLOOD

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 02

text: N

text: b6878eae-a117-4224-8440-c26c101c1061-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 03

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: MUSEUM AND INSTITUTE OF ZOOLOGY, POLISH ACADEMY OF SCIENCES | NATURE RESEARCH CENTRE

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Biebrza Valley | near Mścichy village

characteristic: geographic location (region and locality)

text: wet meadow

text: JUSTYNA KUBACKA

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: Poland | Biebrza Valley | near Mścichy village

text: ERGA

text: N

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 03

text: N

text: 3c40ad37-1364-42af-8ac4-fb191666cb7a-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 03

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: 0000-0003-1211-8324 | 0000-0002-4714-0305

text: Poland

text: Biebrza Valley | near Mścichy village

text: wet meadow

characteristic: habitat

text: JUSTYNA KUBACKA

text: Museum and Institute of Zoology, Polish Academy of Sciences

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: BLOOD

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 03

text: N

text: 941da915-359c-43dc-9cd3-e4c66e521965-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 03

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Biebrza Valley | near Mścichy village

characteristic: geographic location (region and locality)

text: wet meadow

text: JUSTYNA KUBACKA

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: ERGA

text: N

text: mist-netted by nest and blood-sampled through brachial venepuncture; blood placed immediately in tube with EDTA and frozen in liquid nitrogen

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 03

text: N

text: e428ce00-f486-4680-a9ca-f62e1057a6fd-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 03

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: N

text: COPO

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

text: Poland

text: Biebrza Valley | near Mścichy village

text: wet meadow

characteristic: habitat

text: JUSTYNA KUBACKA

text: adult

characteristic: lifestage

text: Acrocephalus paludicola

text: BLOOD

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ERGA

characteristic: project name

text: N

characteristic: proxy voucher

characteristic: relationship

characteristic: sample collection device or method

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Acrocephalus paludicola

text: FEMALE

text: ERGA JKVP 8324 03

text: N

text: 087ab513-7529-40cc-a5d8-9295b55938ab-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope

characteristic: GAL

text: ERGA JKVP 8324 03

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: N

text: COPO

characteristic: broker name

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Biebrza Valley | near Mścichy village

characteristic: geographic location (region and locality)

text: wet meadow

text: JUSTYNA KUBACKA

text: adult

text: Acrocephalus paludicola

characteristic: organism

text: BLOOD

text: ERGA

text: N

text: JUSTYNA KUBACKA | VAIDAS PALINAUSKAS

characteristic: sample derived from

text: Acrocephalus paludicola

text: FEMALE

characteristic: sex

text: ERGA JKVP 8324 03

text: N

text: 2e6fad6d-5b09-4b3f-85ee-0d64695bd193-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH

characteristic: INSDC center name

text: public

tag: Namespace:ETH ZURICH

text: blood

text: domestic pig

characteristic: common name

text: pig

characteristic: description

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: large white

characteristic: title


text: ETH ZURICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: blood

text: domestic pig

text: pig

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Alpenschwein


text: ETH ZURICH

text: public

text: blood

text: domestic pig

text: pig

text: Sus scrofa domesticus

text: Sus scrofa domesticus


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: Pajdak-Stós

text: Jagiellonian University

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: depth

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kraków

characteristic: geographic location (region and locality)

text: activated sludge

characteristic: habitat

text: Bielańska-Grajner

text: University of Silesia, Katowice, Poland

text: adult

characteristic: lifestage

text: Lecane inermis

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Lecane inermis

text: FEMALE

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institute for Functional Gene Analytics (IFGA)

text: human

characteristic: common name

text: Krankenhaus

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: Institute for Functional Gene Analytics (IFGA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Krankenhaus

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Stuhl

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Haut

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Zervix

text: Homo sapiens

text: Homo sapiens


text: ETH ZURICH

text: public

text: testis

text: cattle

text: bull

text: Bos taurus

text: Bos taurus

text: Holstein


text: McGill University

text: public

tag: Namespace:McGill University

text: Wastewater

characteristic: broad-scale environmental context

characteristic: collection date

text: Lab scale activated sludge reactor sample

text: Wastewater

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Activated sludge

characteristic: local environmental context

text: activated sludge metagenome

text: Antimicrobial Resistance Gene Sequencing

characteristic: project name

text: activated sludge metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: McGill University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Wastewater

text: Influent wastewater sample

text: Wastewater

text: Canada

text: Influent wastewater

text: wastewater metagenome

text: wastewater metagenome


text: Facultad de Ciencias de la Vida

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Facultad de Ciencias de la Vida

text: horse

characteristic: common name

text: Sample from healthy individual 01

characteristic: description

text: Equus caballus

characteristic: organism

text: Equus caballus

characteristic: title


text: Facultad de Ciencias de la Vida

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: horse

text: Sample from healthy individual 02

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 03

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 04

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 05

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 06

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 07

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 08

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 09

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 10

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 11

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 12

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 13

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from healthy individual 14

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 01

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 02

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 03

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 04

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 05

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 06

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 07

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 08

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 09

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 10

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 11

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 12

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 13

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 14

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 15

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 16

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 17

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 18

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 19

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 20

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 21

text: Equus caballus

text: Equus caballus


text: Facultad de Ciencias de la Vida

text: public

text: horse

text: Sample from individual with colic 22

text: Equus caballus

text: Equus caballus


text: The Wadsworth Center/NYSDOH

text: public

tag: Namespace:The Wadsworth Center/NYSDOH

text: ArrayExpress

characteristic: broker name

text: Protocols: Cells were collected by filtration over a 0.22 um filter. Cells were scraped off the filter using a cell scraper and flash frozen in liquid nitrogen + 700 ul lysis buffer (20mM Tris pH 8.0; 10mM MgCl2; 100mM NH4Cl; 5mM CaCl2; 0.4% Triton X100; 0.1% NP-40; 1mM chloramphenicol; 100 U/ml DNase I). Frozen cells were milled for 6 cycles (MG1655, mc2-155 and MKD158) or 8 cycles (mc2-7000) of 3 minutes each at 15 Hz. Pulverized cells were transferred to a 50 mL conical containing liquid nitrogen and stored at -80°C. Overnight cultures were set up in 4 mL 7H9 media with 0.2% glycerol, 10% OADC and 0.05% Tween80 and grown at 37°C/225 rpm. Subcultures were set up in 400 mL of the same media at OD600 ~0.01 and grown to OD600 ~ 1.0. Cell extracts were thawed and incubated on ice for 30 min. Samples were transferred to a new 1.7 mL tube and spun at 13,200 rpm for 10 min at 4°C. Supernatants removed and transferred to new tube. For all samples, 1 uL of supernatant was diluted 1:100 in DEPC H2O and quantified by nanodrop. 1 mg aliquots of cell extracts were flash frozen in liquid nitrogen. Monosomes were isolated by digesting 1 mg of cell extract with 1500 units of MNase for 1 hour at room temperature on a rotisserie. The reaction was quenched by adding 2 ul of 0.5 M EGTA after which the digest was run over a 10-50% sucrose gradient. Fractions from the sucrose gradients were run on a 1% agarose gel with 1% bleach. Based on the gel, fractions were selected and monosomes isolated by acid phenol:chloroform extraction and isopropanol precipitation. Monosomes were denatured at 80°C, 1400 rpm for 2 min and then run on a 15% denaturing gel alongside a 15nt RNA oligo and a low range ssRNA ladder to size select approximately 15 nt-50 nt fragments. Samples were gel extracted overnight at 4°C on a nutator in 500 ul RNA gel extraction buffer (300mM NaOAc (pH 5.5), 1 mM EDTA, 0.1 U/ml SUPERase-In) followed by isopropanol precipitation. Samples were denatured at 80°C for 90 sec and then equilibrated to 37°C. Samples were dephosphorylated by incubating with T4 PNK for 1 hour at 37°C and isopropanol precipitated. Approx 1 ug of the preadenylated 3’ linker oligo JW9371 was added to each sample and samples were denatured at 80°C for 90 sec. RNA and JW9371 linker oligo were added to a ligation reaction using T4 RNA Ligase 2, truncated KQ in the presence of 15% w/v PEG8000. The ligation reaction was incubated o/n at 16°C, followed isopropanol precipitation. Samples were denatured at 80°C, 1400 rpm for 2 min and then run on a 15% denaturing gel alongside a mock ligation and a 31 nt marker, and the sample ligation from 31 nt-80 nt was extracted overnight at 4°C on a nutator in 500 uL RNA gel extraction buffer. Reverse transcription was performed on the RNA samples using Superscript III (Life Technologies) and oligo JW8875 at 55°C for 30 min according to the protocol of Ingolia. Samples were hydrolyzed by adding 1N NaOH ([final] = 0.1N) and incubating at 95°C for 15 min followed by 80°C for 2 min. The reaction was run on a 10% denaturing gel and was extracted overnight at 4°C on a nutator in 500 ul DNA gel extraction buffer (300 mM NaCl, 10 mM Tris-Cl (pH 8), 1 mM EDTA). Reverse transcribed samples were then circularized using CircLigase and incubated for 1 hour 30 min at 60°C followed by a 10 minute incubation at 80°C. Samples were PCR amplified according to Ingolia using Phusion High Fidelity DNA Polymerase, JW8835 as the standard forward primer and JW3249, 3250, 8876, 8877, 10754, 10755, 10756 or 10757 corresponding to barcode index numbers 1, 2, 34, 39, 40, 41, 42 or 43 respectively, as the reverse primer. A range of cycle numbers of PCR were tested. Samples were run on an 8% acrylamide gel and were selected for gel extraction based on the appearance of a distinct band above the adapter band on the gel. Gel extraction was in 500 uL DNA gel extraction buffer, overnight at 4°C on a nutator. Following an isopropanol precipitation, samples were quantified by Qubit and sent for sequencing.

text: exponential phase

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 7H9 medium

characteristic: growth condition

text: Mycolicibacterium smegmatis MC2 155

text: Mycolicibacterium smegmatis MC2 155

text: whole organism

characteristic: organism part

text: Mycolicibacterium smegmatis MC2 155


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: The Wadsworth Center/NYSDOH

text: public

text: ArrayExpress

text: exponential phase

text: 7H9 medium

text: Mycolicibacterium smegmatis MC2 155

text: Mycolicibacterium smegmatis MC2 155

text: whole organism

text: Mycolicibacterium smegmatis MC2 155


characteristic: External Id

text: University of Bern

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University of Bern

text: UNIVERSITY OF BERN

characteristic: collecting institution

text: P.F.

characteristic: collector name

text: Transcriptome analysis were done on days 0, 2, 4, 6 of RBP6-induced T. brucei samples

text: Switzerland

characteristic: geographic location (country and/or sea)

text: T. b. brucei 427 (29-13)

characteristic: isolate

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: Transcriptome of RBP6-induced cell line


text: The Wadsworth Center/NYSDOH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: Protocols: Cells were collected by filtration over a 0.22 um filter. Cells were scraped off the filter using a cell scraper and flash frozen in liquid nitrogen + 700 ul lysis buffer (20mM Tris pH 8.0; 10mM MgCl2; 100mM NH4Cl; 5mM CaCl2; 0.4% Triton X100; 0.1% NP-40; 1mM chloramphenicol; 100 U/ml DNase I). Frozen cells were milled for 6 cycles (MG1655, mc2-155 and MKD158) or 8 cycles (mc2-7000) of 3 minutes each at 15 Hz. Pulverized cells were transferred to a 50 mL conical containing liquid nitrogen and stored at -80°C. Overnight cultures were set up in 4 mL 7H9 media with 0.2% glycerol, 10% OADC and 0.05% Tween80 and grown at 37°C/225 rpm. Subcultures were set up in 400 mL of the same media at OD600 ~0.01 and grown to OD600 ~ 1.0. RNA from a scoopful of cell powder was extracted with acid phenol:chloroform followed by isopropanol precipitation as described previously. DNase treat total RNA: set up 50uL reaction including 6-8 ug RNA, 5 uL of 10X buffer and 1 uL DNase enzyme (Ambion). Incubate 45 min at 37 °C. Stop reaction by adding 352 uL DEPC H2O + 134 uL acid phenol:chloroform + 268 uL chloroform:isoamyl alcohol 24:1. Transfer all to phase lock tube and spin at max speed for 6 min. Transfer upper phase to new microcentrifuge tube containing 40 uL 3M Na Acetate + 2 uL glycogen (20 mg/mL stock). Add 1 mL ice cold EtOH and precipitate at -80 °C overnight. Spin samples for 30 min at 4 °C at max speed. Pipet off supernatant. Wash with 0.7 mL of 70% EtOH (in DEPC H2O), spin 10 min at max speed at 4 °C and remove supernatant. Wash again with 0.7 mL of 70% EtOH (in DEPC H2O), spin for 10 min at max speed at 4 °C and pipet off supernatant. Dry pellet at room temperature and resuspend in 15 uL nuclease free water. Remove ribosomal RNA using the NEBNext rRNA Depletion Kit (NEB # E7850): input is 1 ug DNase treated RNA. For mycobacteria, adjust 15 uL probe hybridization reaction to 1 ug RNA in 10 uL + 1 uL NEBNext Bacterial rRNA Depletion Solution + 2 uL NEBNext Probe Hybridization Buffer + 2 uL mycoprobe. Incubate (in thermocycler) 95 °C 2 min, ramp down to 22 °C @ 0.1 °C/sec, 22 °C 5 min. Set up RNase H digestion with 15 uL hybridized RNA: add 2 uL RNase H Reaction buffer, 2 uL NEBNext thermostable RNase H and 1 uL nuclease free water. Incubate in thermocycler 30 min @ 50 °C with heated lid set to 55 °C. Set up DNase I digestion with 20 uL RNA: add 5 uL DNase I reaction buffer, 2.5 uL NEBNext DNase I and 22.5 uL nuclease free water. Incubate in thermocycler 30 min @ 37 °C with heated lid set to 40 °C. Clean reaction using NEBNext RNA Sample Purification beads: add 90 uL beads to RNA and mix by pipetting 10x. Incubate 15 min on ice. Place tube on magnetic stand and when solution clear, pipet off supernatant. Add 200 uL 80% EtOH to tube (do not disturb pellet), incubate 30 sec @ RT, then remove supernatant. Repeat for a second wash. Pipet off residual EtOH and air dry beads up to 5 min with tube on rack. Remove tube from rack and resuspend beads in 25 uL nuclease-free water. Pipet 10x to mix, incubate 2 min @ RT, place tube on magnetic stand until solution clears, transfer supernatant to fresh tube. Fragmentation was performed by incubating the rRNA removed RNA with fragmentation buffer (0.5 M EDTA; 0.1 M Na2CO3; 0.1 M NaHCO3) for 25 minutes at 95°C followed by isopropanol precipitation. rRNA depleted (+/- fragmentation) mRNA was run on a 15% denaturing gel alongside a 15nt RNA oligo and a low range ssRNA ladder to size select approximately 15 nt-50 nt fragments. Samples were gel extracted overnight at 4°C on a nutator in 500 ul RNA gel extraction buffer (300mM NaOAc (pH 5.5), 1 mM EDTA, 0.1 U/ml SUPERase-In) followed by isopropanol precipitation. Samples were denatured at 80°C for 90 sec and then equilibrated to 37°C. Samples were dephosphorylated by incubating with T4 PNK for 1 hour at 37°C and isopropanol precipitated. Approx 1 ug of the preadenylated 3’ linker oligo JW9371 was added to each sample and samples were denatured at 80°C for 90 sec. RNA and JW9371 linker oligo were added to a ligation reaction using T4 RNA Ligase 2, truncated KQ in the presence of 15% w/v PEG8000. The ligation reaction was incubated o/n at 16°C, followed isopropanol precipitation. Samples were denatured at 80°C, 1400 rpm for 2 min and then run on a 15% denaturing gel alongside a mock ligation and a 31 nt marker, and the sample ligation from 31 nt-80 nt was extracted overnight at 4°C on a nutator in 500 uL RNA gel extraction buffer. Reverse transcription was performed on the RNA samples using Superscript III (Life Technologies) and oligo JW8875 at 55°C for 30 min according to the protocol of Ingolia. Samples were hydrolyzed by adding 1N NaOH ([final] = 0.1N) and incubating at 95°C for 15 min followed by 80°C for 2 min. The reaction was run on a 10% denaturing gel and was extracted overnight at 4°C on a nutator in 500 ul DNA gel extraction buffer (300 mM NaCl, 10 mM Tris-Cl (pH 8), 1 mM EDTA). Reverse transcribed samples were then circularized using CircLigase and incubated for 1 hour 30 min at 60°C followed by a 10 minute incubation at 80°C. Samples were PCR amplified according to Ingolia using Phusion High Fidelity DNA Polymerase, JW8835 as the standard forward primer and JW3249, 3250, 8876, 8877, 10754, 10755, 10756 or 10757 corresponding to barcode index numbers 1, 2, 34, 39, 40, 41, 42 or 43 respectively, as the reverse primer. A range of cycle numbers of PCR were tested. Samples were run on an 8% acrylamide gel and were selected for gel extraction based on the appearance of a distinct band above the adapter band on the gel. Gel extraction was in 500 uL DNA gel extraction buffer, overnight at 4°C on a nutator. Following an isopropanol precipitation, samples were quantified by Qubit and sent for sequencing.

characteristic: description

text: exponential phase

text: wild type genotype

text: 7H9 medium

text: Mycolicibacterium smegmatis MC2 155

characteristic: organism

text: Mycolicibacterium smegmatis MC2 155

text: whole organism

text: Mycolicibacterium smegmatis MC2 155

characteristic: title


text: The Wadsworth Center/NYSDOH

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: exponential phase

characteristic: developmental stage

characteristic: genotype

text: 7H9 medium

characteristic: growth condition

text: Mycolicibacterium smegmatis MC2 155

text: Mycolicibacterium smegmatis MC2 155

text: whole organism

characteristic: organism part

text: Mycolicibacterium smegmatis MC2 155


E-MTAB-12800:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12800:Sample 1

tag: Namespace:Wallenberg Centre for Molecular Medicine, Linkoping University, Sweden - Department of Biomedical and Clinical Sciences, Division of Molecular Medicine and Virology; Faculty of Medicine and Health Sciences; Linkoping University, Sweden  - Department of Biomedical and Clinical Sciences, Division of Molecular Medicine and Virology; Faculty of Medicine and Health Sciences; Linkoping University, Sweden

text: ArrayExpress

text: erythroid progenitor cell

text: human

characteristic: common name

text: Protocols: The cells in each sample are in suspension. Medium with the cells was collected, cells were pelleted and then resuspended as described in the nucleic acid extraction protocol (CUT&RUN) CUT&RUN was performed according to the LoV-U protocol described in (Zambanini et al., 2022). Per each sample 500,000 HUDEP1 (SOX6-Flag expressing) were harvested. Cells were washed three times in Nuclear Extraction (NE) buffer (HEPES-KOH pH-8.2 [20 mM], KCl [10 mM],Spermidine [0.5 mM], IGEPAL [0.05%], Glycerol [20%], Roche Complete Protease Inhibitor EDTA-Free), then resuspended in 40 μl NE per sample and bound to 20 μl Magnetic ConA Agarose beads (ABIN6952467) equilibrated in binding buffer (HEPES pH-7.5 [20 mM], KCl [10 mM], CaCl2 [1 mM], MnCl2 [1 mM]). After incubation, nuclei and beads were resuspended for 5 minutes in EDTA wash buffer (HEPES pH-7.5 [20 mM], NaCl [150 mM], spermidine [0.5 mM] in Roche Complete Protease Inhibitor EDTA-Free (COEDTAFRO), + EDTA [0.2 mM]). Samples were divided in 200 μl PCR tubes and antibody incubation was performed in 200 μl wash buffer with 2 μl of anti-FLAG antibody (Cat. F7425, Sigma-aldrich) overnight (ON) at 4 °C on a rotator. After ON incubation, samples were washed five times in wash buffer and resuspended in 200 μl of pAG-MN buffer (wash buffer supplemented with pAG-MN [0.6 μg/ml]) for 30 minutes at 4 °C on a rotator.pAG/MNase was a gift from Steven Henikoff (Addgene #123461), expressed and purified as described previously (Meers et al., 2019a). Samples were washed five times, followed by digestion for 30 minutes in wet ice in 50 µl wash buffer with 2 mM CaCl2. After 30 minutes, the digestion buffer was moved to new collection tubes and the reaction on the beads was stopped with 50 μl of 1X Urea STOP buffer (NaCl [100 mM], EDTA [2 mM], EGTA [2 mM], IGEPAL [0.5%], Urea [8.5 M]) and the samples were incubated for 1 hour at 4°C. Beads were collected on the magnetic rack, while the supernatant was mixed in the corresponding collection tube, where it was cleaned up twice using Mag-Bind TotalPure NGS beads (Cat. #M1327, Omega Bio- Tek) at 2X, and then resuspended in 20 μl Tris-HCl pH 7.5. Library preparation was performed using the KAPA Hyper Prep Kit for Illumina platforms (Cat. #KK8504, KAPA Biosystems) according to the manufacturer’s guidelines with the following modifications. End repair and A-tailing was performed with 0.4 size reactions with 20 μl of purified DNA. The thermocycler conditions were set to 12 °C for 15 min, 37 °C for 15 min and 58 °C for 25 min to prevent thermal degradation of the shortest fragments. Adapter ligation was done with 0.4 size reactions. KAPA Dual Indexed adapters were used at 0.15 μM. A post-ligation clean-up was performed with Mag-Bind TotalPure NGS beads at 1.2X. Resuspension was done in 10 mM Tris-HCl pH 8.0. Library amplification was performed with 0.5 size reactions. The cycling conditions were set as follows: 45 sec initial denaturation at 98 °C, 15 sec denaturation at 98 °C, 10 sec annealing/elongation at 60 °C, 1 min final extension at 72 °C, hold at 4 °C, with 13 cycles. After amplification, a post-amplification cleanup was performed with 1.2X beads. Libraries were then run on an E-Gel EX 2% agarose gel (Cat. # G402022, Invitrogen) for 10 min using the E-Gel Power Snap Electrophoresis System (Invitrogen). Bands of interest between 150 and 500 bp were cut out and purified using the QIAquick Gel Extraction Kit (Cat. #28706, QIAGEN) according to manufacturer’s instructions.

text: neonate

text: normal

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens

text: Sample 1


E-MTAB-12800:Sample 2

text: Wallenberg Centre for Molecular Medicine, Linkoping University, Sweden - Department of Biomedical and Clinical Sciences, Division of Molecular Medicine and Virology; Faculty of Medicine and Health Sciences; Linkoping University, Sweden - Department of Biomedical and Clinical Sciences, Division of Molecular Medicine and Virology; Faculty of Medicine and Health Sciences; Linkoping University, Sweden

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12800:Sample 2

text: ArrayExpress

text: erythroid progenitor cell

text: human

characteristic: description

text: neonate

text: normal

text: Sox6-Flag overexpression

text: Homo sapiens

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens

text: Sample 2


E-MTAB-12800:Sample 3

text: public

text: E-MTAB-12800:Sample 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: erythroid progenitor cell

text: human

text: neonate

text: normal

text: Sox6-Flag overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens

text: Sample 3

characteristic: title


text: UNIVERSITY OF OXFORD

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: University of Oxford

characteristic: collecting institution

characteristic: collection date

text: Modernising Medical Microbiology

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

text: not collected

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Influenza A virus

text: Influenza A virus

text: Influenza genome sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:National Bureau of Plant Genetic Resources

characteristic: Submitter Id

text: IBDC

characteristic: broker name

text: sesame

characteristic: common name

text: F14 genotype

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: National Bureau of Plant Genetic Resources

text: public

text: IBDC

text: sesame

text: K22 genotype

characteristic: description

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


characteristic: External Id

text: public

text: IBDC

text: sesame

text: N25 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: C42 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: A36 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: F15 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: I68 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: B43 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: University of Bern

text: public

text: UNIVERSITY OF BERN

characteristic: collecting institution

text: P.F.

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: T. b. brucei 427 (29-13)

characteristic: isolate

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: Transcriptome of RBP6-induced cell line


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IBDC

text: sesame

text: F80 genotype

text: seedling

text: Sesamum indicum

characteristic: organism

text: diploid

text: Sesamum indicum

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IBDC

text: sesame

text: N17 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


characteristic: ENA-CHECKLIST

text: public

text: IBDC

characteristic: broker name

text: sesame

characteristic: common name

text: Q78 genotype

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: IBDC

text: sesame

text: C43 genotype

characteristic: description

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: N49 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


E-MTAB-12811:Sample 10

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 10

tag: Namespace:Beatson Institute for Cancer Research

text: ArrayExpress

text: house mouse

text: Protocols: Mice were humanely culled by CO2 asphyxiation. Tumours were immediately removed and cut in half along the largest dimension. One half was preserved to be used for immunohistochemistry (IHC). The remaining half was dissected into ~1mm3 fragments, from which three were preserved in RNA later and frozen at -70°c after 30 minutes. For the xenograft model of A375 derived tumours in NSG mice, cells were cultured in MEM, until cells reached 100% confluence. Cells were detached with trypsin, centrifuged at 180 rcf for 5 minutes and resuspended in PBS at a concentration of 10 million cells/mL. 1 million cells were injected subcutaneously into the right flank of NSG mice. For treatment of NSG and C57BL/6 mice, CB-839 was given twice daily dose of 200mg/kg (10uL/g) via oral gavage, in a vehicle of 25% (w/v) hydroxypropyl-β-cyclodextrin in 10 mmol/L citrate (pH 2). PLX4032 (Adooq Bioscience) was given once daily via an intraperitoneal injection of 10mg/kg (4uL/g) in a vehicle of 4% DMSO, 4% TWEEN80 and 92% PBS.Subsequently to transplantation of cells, all mice were weighed and had their tumours measured three times each week. The endpoint for tumour growth was pre-defined as a maximal dimension of 15mm. All in vivo experiments were carried out in a dedicated barriered facility under the Animal (Scientific Procedures) act 1989. Tumour samples in RNAlater were thawed immediately before RNA extraction. Fragments were weighed and a mass of 200-300 tissue was used per sample from the available fragments. RNA extraction was performed using an RNeasy mini kit (Qiagen, 74106) with a RNase-Free DNase Set (Qiagen, 79254) and QIAshredder columns (Qiagen, 79656).Quality control of all RNA samples was performed using High Sensitivity RNA screen tape (Agilent, 5067-5579) on an Agilent Tapestation 2200. All samples had an RNA integrity number (RIN) value >8 and so were processed. RNA concentrations were determined by Qubit Fluorometer using the Qubit RNA Broad Range assay (both Thermo Fisher). 1ug of total RNA was used as input. Libraries were prepared using Illumina Stranded mRNA(Illumina, 2021) with IDT for Illumina RNA UD Indexes (Illumina, 20027213) used to index libraries. Post library QC was then performed using High Sensitivity D1000 screentape (Agilent, 5067-5584) for library sizing and profiling and quantified using Qubit High Sensitivity DNA assay. Libraries were then pooled equimolar, to a final concentration of 4nM prior to sequencing.

text: adult

characteristic: developmental stage

text: metastatic melanoma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: NSG

characteristic: strain

text: Sample 10

text: A375 injected subcutaneously into flank until neoplasm formation

characteristic: xenograft


E-MTAB-12811:Sample 11

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12811:Sample 11

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

text: NSG

text: Sample 11

characteristic: title


E-MTAB-12811:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 12

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

text: NSG

text: Sample 12


E-MTAB-12811:Sample 16

characteristic: External Id

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 16

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: metastatic melanoma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: male

text: NSG

text: Sample 16


E-MTAB-12811:Sample 17

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12811:Sample 17

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

characteristic: sex

text: NSG

characteristic: strain

text: Sample 17

characteristic: xenograft


E-MTAB-12811:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute for Cancer Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12811:Sample 18

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

text: NSG

text: Sample 18

characteristic: title


E-MTAB-12811:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

text: NSG

text: Sample 1


E-MTAB-12811:Sample 13

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12811:Sample 13

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: metastatic melanoma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: male

text: NSG

text: Sample 13


E-MTAB-12811:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute for Cancer Research

characteristic: INSDC last update

text: public

text: E-MTAB-12811:Sample 14

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

characteristic: sex

text: NSG

characteristic: strain

text: Sample 14

characteristic: xenograft


E-MTAB-12811:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute for Cancer Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12811:Sample 15

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

text: NSG

text: Sample 15

characteristic: title


E-MTAB-12811:Sample 2

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12811:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

text: NSG

text: Sample 2


E-MTAB-12811:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 3

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: metastatic melanoma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

text: NSG

text: Sample 3


E-MTAB-12811:Sample 19

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute for Cancer Research

characteristic: INSDC last update

text: public

text: E-MTAB-12811:Sample 19

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

characteristic: sex

text: NSG

characteristic: strain

text: Sample 19

characteristic: xenograft


E-MTAB-12811:Sample 20

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12811:Sample 20

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

text: NSG

text: Sample 20

characteristic: title


E-MTAB-12811:Sample 21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 21

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

text: NSG

text: Sample 21


E-MTAB-12811:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 7

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: metastatic melanoma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

text: NSG

text: Sample 7


E-MTAB-12811:Sample 8

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12811:Sample 8

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

characteristic: sex

text: NSG

characteristic: strain

text: Sample 8

characteristic: xenograft


E-MTAB-12811:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute for Cancer Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12811:Sample 9

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

text: NSG

text: Sample 9

characteristic: title


E-MTAB-12811:Sample 22

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 22

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

text: NSG

text: Sample 22


E-MTAB-12811:Sample 23

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12811:Sample 23

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: metastatic melanoma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: male

text: NSG

text: Sample 23


E-MTAB-12811:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute for Cancer Research

characteristic: INSDC last update

text: public

text: E-MTAB-12811:Sample 24

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: male

characteristic: sex

text: NSG

characteristic: strain

text: Sample 24

characteristic: xenograft


E-MTAB-12811:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beatson Institute for Cancer Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12811:Sample 4

text: ArrayExpress

text: house mouse

text: adult

text: metastatic melanoma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

text: NSG

text: Sample 4

characteristic: title


E-MTAB-12811:Sample 5

text: Beatson Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12811:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: metastatic melanoma

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

text: neoplasm

text: Mus musculus

text: female

text: NSG

text: Sample 5


E-MTAB-12811:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Beatson Institute for Cancer Research

text: public

text: E-MTAB-12811:Sample 6

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: metastatic melanoma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: lateral lumbar region of abdomen

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

text: NSG

text: Sample 6


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: IBDC

text: sesame

text: I58 genotype

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


text: public

characteristic: INSDC status

characteristic: SRA accession

text: IBDC

text: sesame

text: T74 genotype

text: seedling

text: Sesamum indicum

characteristic: organism

text: diploid

text: Sesamum indicum

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: IBDC

characteristic: broker name

text: sesame

text: H83 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: IBDC

text: sesame

characteristic: common name

text: F10 genotype

characteristic: description

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: G34 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: RADBOUD UNIVERSITY NIJMEGEN

text: public

tag: Namespace:RADBOUD UNIVERSITY NIJMEGEN

text: Methylacidiphilum fumariolicum closed genome

text: Methylacidiphilum fumariolicum

text: Methylacidiphilum fumariolicum


text: public

text: IBDC

text: sesame

text: Z28 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: Y18 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: O34 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: U86 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: N75 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

tag: Namespace:Department of Cytology. Faculty of Biology, University of Warsaw

text: ArrayExpress

text: primary cell line

text: myoblast

text: house mouse

text: Protocols: SC-derived myoblasts were transfected with predesigned Silencer Select siRNA (Life Technologies) complementary to CXCR4 encoding mRNA (ID: s64091). Appropriate negative control siRNA was used, according to the manufacturer's recommendation. The siRNA duplexes were diluted in DMEM to a concentration of 100 pmol and Lipofectamine RNAiMAX (Life Technologies) was added according to the manufacturer's instructions. Mouse recombinant SDF-1 (10 ng/µl) was added to cell culture 24 h after transfection. The cells were then collected and processed 48h after SDF-1 treatment for RNA isolation and RNA sequencing. RNA was extracted in AROS Applied Biotechnology A/S Science Park Skejby (Denmark) with the QIAsymphony RNA extraction kit from QIAGEN (Germany) using the QIAsymphony SP Biorobot from QIAGEN (miRNA CT 400 program). MiRNA was quantified using a Qubit fluorometer and approximately 150 bp-long barcode libraries were created. The quality of the libraries was validated using the Bioanalyzer 2100 DNA High Sensitivity Kit (Agilent, USA). Libraries' concentrations were measured with the KAPA Library Quantification Kit during qPCR. Libraries were pooled with a 30% increase in control libraries PhiX (Illumina) and hybridized to a sequencing flow cell.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: skeletal muscle of trunk

characteristic: organism part

text: Mus musculus

text: control


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Cytology. Faculty of Biology, University of Warsaw

characteristic: INSDC last update

text: public

text: ArrayExpress

text: primary cell line

text: myoblast

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: skeletal muscle of trunk

text: Mus musculus


E-MTAB-12810:siRNA CXCR4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12810:siRNA CXCR4

text: ArrayExpress

text: primary cell line

text: myoblast

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: skeletal muscle of trunk

text: Mus musculus

text: siRNA CXCR4


E-MTAB-12810:siRNA CXCR7

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12810:siRNA CXCR7

text: ArrayExpress

text: primary cell line

text: myoblast

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: skeletal muscle of trunk

text: Mus musculus

text: siRNA CXCR7

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: IBDC

characteristic: broker name

text: sesame

text: X84 genotype

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


characteristic: ENA-FIRST-PUBLIC

text: public

text: IBDC

text: sesame

characteristic: common name

text: I75 genotype

characteristic: description

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: K89 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: I82 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: F85 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: Denmark

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

text: IBDC

text: sesame

text: O12 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: X89 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: Z61 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: L47 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: V67 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: I86 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: Z65 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: I65 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: M41 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: N74 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: N13 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: V14 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: J12 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: N30 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: J19 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: Z37 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: N18 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: J10 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: I95 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: public

text: IBDC

text: sesame

text: N42 genotype

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: GHENT UNIVERSITY

text: public

tag: Namespace:GHENT UNIVERSITY

text: solitary bee

characteristic: broad-scale environmental context

characteristic: collection date

text: Anthophora plumipes 10 midgut

text: midgut

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Anthophora plumipes

characteristic: local environmental context

text: insect gut metagenome

text: Gut fungal communities in the gut compartments and ovaries of four solitary bee species

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: solitary bee

text: Anthophora plumipes 12 hindgut

text: hindgut

text: Belgium

text: Anthophora plumipes

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

characteristic: collection date

text: Anthophora plumipes 12 ovaries

characteristic: description

text: ovaries

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Anthophora plumipes

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

text: Anthophora plumipes 16 ovaries

text: ovaries

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Anthophora plumipes

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: solitary bee

text: Anthophora plumipes 17 ovaries

text: ovaries

text: Belgium

text: Anthophora plumipes

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

characteristic: collection date

text: Anthophora plumipes 19 ovaries

characteristic: description

text: ovaries

text: Belgium

text: Anthophora plumipes

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

text: Anthophora plumipes 1 ovaries

text: ovaries

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Anthophora plumipes

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Anthophora plumipes 2 hindgut

text: hindgut

text: Belgium

text: Anthophora plumipes

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

characteristic: collection date

text: Anthophora plumipes 5 midgut

characteristic: description

text: midgut

text: Belgium

text: Anthophora plumipes

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

text: Anthophora plumipes 8 ovaries

text: ovaries

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Anthophora plumipes

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Anthophora plumipes 9 ovaries

text: ovaries

text: Belgium

text: Anthophora plumipes

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Anthophora plumipes 10 hindgut

text: hindgut

text: Belgium

text: Anthophora plumipes

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Anthophora plumipes 8 midgut

characteristic: description

text: midgut

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Anthophora plumipes

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Andrena vaga 11 hindgut

text: hindgut

text: Belgium

text: Andrena vaga

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Andrena vaga 11 midgut

text: midgut

text: Belgium

text: Andrena vaga

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Andrena vaga 12 midgut

characteristic: description

text: midgut

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Andrena vaga

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Andrena vaga 16 midgut

text: midgut

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Andrena vaga

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Andrena vaga 1 midgut

text: midgut

text: Belgium

text: Andrena vaga

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Andrena vaga 3 crop

characteristic: description

text: crop

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Andrena vaga

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Andrena vaga 4 hindgut

text: hindgut

text: Belgium

text: Andrena vaga

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Andrena vaga 2 crop

text: crop

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Andrena vaga

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Andrena vaga 1 hindgut

characteristic: description

text: hindgut

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Andrena vaga

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Andrena vaga 5 hindgut

text: hindgut

text: Belgium

text: Andrena vaga

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Colletes cunicularius 10 ovaries

text: ovaries

text: Belgium

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Colletes cunicularius 13 ovaries

characteristic: description

text: ovaries

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Colletes cunicularius 14 hindgut

text: hindgut

text: Belgium

text: Colletes cunicularius

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Colletes cunicularius 15 ovaries

text: ovaries

text: Belgium

text: Colletes cunicularius

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Colletes cunicularius 1 midgut

characteristic: description

text: midgut

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Colletes cunicularius 1 ovaries

text: ovaries

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Colletes cunicularius 3 hindgut

text: hindgut

text: Belgium

text: Colletes cunicularius

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Colletes cunicularius 4 midgut

characteristic: description

text: midgut

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Colletes cunicularius

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Colletes cunicularius 4 ovaries

text: ovaries

text: Belgium

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Colletes cunicularius 5 ovaries

text: ovaries

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Colletes cunicularius 7 ovaries

characteristic: description

text: ovaries

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Colletes cunicularius

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: solitary bee

text: Colletes cunicularius 8 ovaries

text: ovaries

text: Belgium

text: Colletes cunicularius

characteristic: local environmental context

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: solitary bee

characteristic: broad-scale environmental context

text: Colletes cunicularius 9 midgut

text: midgut

text: Belgium

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-CHECKLIST

text: GHENT UNIVERSITY

text: public

text: solitary bee

characteristic: collection date

text: Colletes cunicularius 4 crop

characteristic: description

text: crop

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Colletes cunicularius

text: insect gut metagenome

text: insect gut metagenome

text: 16S rRNA

text: V3-V4 region