text: public

text: Adult worm grown on Novosphingobium L78

text: Pristionchus pacificus

text: Pristionchus pacificus


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Biology, Tuebingen

characteristic: Submitter Id

text: Adult worm grown on Proteus LRB111

characteristic: description

text: Pristionchus pacificus

characteristic: organism

text: Pristionchus pacificus

characteristic: title


text: Max Planck Institute for Biology, Tuebingen

text: public

text: Adult worm grown on Proteus LRB4

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Adult worm grown on Pseudomonas LRB26

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Adult worm grown on Pseudomonas LRB8

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Adult worm grown on Rhizobium L27

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Adult worm grown on Rhizobium L54

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Adult worm grown on Sphingobium L22

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Adult worm grown on Wautersiella LRB104

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Adult worm grown on Wautersiella LRB89

text: Pristionchus pacificus

text: Pristionchus pacificus


text: JRC

text: public

text: water

text: acquatic

characteristic: environment (biome)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Niederaltaich-Mühlau

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: JRC

text: public

text: water

text: acquatic

text: Austria

text: Downstream Vienna

text: metagenome

text: metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JRC

text: public

text: water

text: acquatic

text: Slovakia

text: Bratislava

text: metagenome

text: metagenome


text: JRC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: water

text: acquatic

text: Serbia

text: Vrbica/Simijan

text: metagenome

text: metagenome


text: JRC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: water

text: acquatic

text: Serbia

text: Upstream Timok (Rudujevac / Gruia)

text: metagenome

text: metagenome


text: JRC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: water

text: acquatic

text: Bulgaria

text: Downstream Ruse/ Giurgiu (Marten)

text: metagenome

text: metagenome


text: JRC

text: public

text: water

characteristic: description

text: acquatic

text: Ukraine

text: Reny

text: metagenome

characteristic: organism

text: metagenome


text: Cell and Developmental Biology

text: public

tag: Namespace:Cell and Developmental Biology

text: Developmental RNA-Seq of P. violaceum at 0 hour time point

text: Polysphondylium violaceum

text: Polysphondylium violaceum

characteristic: strain

text: P. violaceum 0h transcriptome

characteristic: title


text: Cell and Developmental Biology

text: public

text: Developmental RNA-Seq of P. violaceum at 4 hour time point

text: Polysphondylium violaceum

text: Polysphondylium violaceum

text: P. violaceum 4h transcriptome


text: Cell and Developmental Biology

text: public

text: Developmental RNA-Seq of P. violaceum at 16 hour time point

text: Polysphondylium violaceum

text: Polysphondylium violaceum

text: P. violaceum 16h transcriptome


text: Cell and Developmental Biology

text: public

text: Developmental RNA-Seq of P. violaceum at 20 hour time point

text: Polysphondylium violaceum

text: Polysphondylium violaceum

text: P. violaceum 20h transcriptome


text: Cell and Developmental Biology

text: public

text: Developmental RNA-Seq of P. violaceum at 24 hour time point

text: Polysphondylium violaceum

text: Polysphondylium violaceum

text: P. violaceum 24h transcriptome


text: UNIVERSITY OF OXFORD

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: University of Oxford

characteristic: collecting institution

characteristic: collection date

text: Modernising Medical Microbiology

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

text: not collected

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Influenza A virus

text: Influenza A virus

text: Influenza genome sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: seawater

characteristic: broad-scale environmental context

unit: m

characteristic: depth

text: seawater

characteristic: environmental medium

text: Pacific Ocean

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seawater

characteristic: local environmental context

text: aquatic metagenome

text: Responses to organic pollutants in the tropical Pacific and subtropical Atlantic oceans by pelagic marine bacteria

characteristic: project name

text: aquatic metagenome

text: Pacific Jun 7 RNA 0.5


text: IDAEA-CSIC

text: public

characteristic: Submitter Id

text: seawater

characteristic: collection date

text: seawater

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: seawater

text: aquatic metagenome

characteristic: organism

text: aquatic metagenome

text: Pacific Jun 7 RNA 2.0

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDAEA-CSIC

characteristic: INSDC center name

text: public

text: seawater

text: seawater

text: Pacific Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome

text: Pacific Jun 5 RNA 0.5


text: IDAEA-CSIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: seawater

characteristic: broad-scale environmental context

text: seawater

text: Pacific Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome

text: Pacific Jun 5 RNA 2.0


text: IDAEA-CSIC

text: public

text: seawater

characteristic: depth

text: seawater

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seawater

characteristic: local environmental context

text: aquatic metagenome

text: aquatic metagenome

text: Atlantic Jul 2 RNA 0.5


text: IDAEA-CSIC

text: public

characteristic: Submitter Id

text: seawater

characteristic: collection date

text: seawater

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: seawater

text: aquatic metagenome

characteristic: organism

characteristic: project name

text: aquatic metagenome

text: Atlantic Jul 2 RNA 2.0


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDAEA-CSIC

text: public

text: seawater

text: seawater

text: Atlantic Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome

text: Atlantic Jul 10 RNA 0.5

characteristic: title


text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: seawater

text: seawater

text: Atlantic Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome

text: Atlantic Jul 10 RNA 2.0


Pacific Jun 7 DNA 0.5_control

text: IDAEA-CSIC

text: public

text: Pacific Jun 7 DNA 0.5_control

text: seawater

characteristic: broad-scale environmental context

characteristic: depth

text: seawater

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seawater

text: aquatic metagenome

text: aquatic metagenome


Pacific Jun 7 DNA 24.0_treatment

text: IDAEA-CSIC

text: public

text: Pacific Jun 7 DNA 24.0_treatment

characteristic: Submitter Id

text: seawater

characteristic: collection date

text: seawater

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: seawater

characteristic: local environmental context

text: aquatic metagenome

characteristic: organism

text: aquatic metagenome


Pacific Jun 7 DNA 24.0_control

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDAEA-CSIC

text: public

text: Pacific Jun 7 DNA 24.0_control

text: seawater

text: seawater

text: Pacific Ocean

text: seawater

text: aquatic metagenome

characteristic: project name

text: aquatic metagenome


Pacific Jun 5 DNA 0.5_control

text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pacific Jun 5 DNA 0.5_control

text: seawater

text: seawater

text: Pacific Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome


Pacific Jun 5 DNA 24.0_treatment

text: IDAEA-CSIC

text: public

characteristic: SRA accession

text: Pacific Jun 5 DNA 24.0_treatment

text: seawater

characteristic: broad-scale environmental context

characteristic: depth

text: seawater

characteristic: environmental medium

text: Pacific Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome


Pacific Jun 5 DNA 24.0_control

text: IDAEA-CSIC

text: public

text: Pacific Jun 5 DNA 24.0_control

characteristic: Submitter Id

text: seawater

characteristic: collection date

text: seawater

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seawater

text: aquatic metagenome

text: aquatic metagenome


Atlantic Jul 2 DNA 0.5_control

characteristic: ENA-CHECKLIST

text: IDAEA-CSIC

text: public

text: Atlantic Jul 2 DNA 0.5_control

text: seawater

text: seawater

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: seawater

characteristic: local environmental context

text: aquatic metagenome

characteristic: organism

text: aquatic metagenome


Atlantic Jul 2 DNA 24.0_treatment

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDAEA-CSIC

text: public

text: Atlantic Jul 2 DNA 24.0_treatment

text: seawater

text: seawater

text: Atlantic Ocean

text: seawater

text: aquatic metagenome

characteristic: project name

text: aquatic metagenome


Atlantic Jul 2 DNA 24.0_control

text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic Jul 2 DNA 24.0_control

text: seawater

text: seawater

text: Atlantic Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome


Atlantic Jul 10 DNA 0.5_control

text: IDAEA-CSIC

text: public

characteristic: SRA accession

text: Atlantic Jul 10 DNA 0.5_control

text: seawater

characteristic: broad-scale environmental context

characteristic: depth

text: seawater

characteristic: environmental medium

text: Atlantic Ocean

text: seawater

text: aquatic metagenome

text: aquatic metagenome


Atlantic Jul 10 DNA 24.0_treatment

text: IDAEA-CSIC

text: public

text: Atlantic Jul 10 DNA 24.0_treatment

characteristic: Submitter Id

text: seawater

characteristic: collection date

text: seawater

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seawater

text: aquatic metagenome

text: aquatic metagenome


Atlantic Jul 10 DNA 24.0_control

characteristic: ENA-CHECKLIST

text: IDAEA-CSIC

text: public

text: Atlantic Jul 10 DNA 24.0_control

text: seawater

text: seawater

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: seawater

characteristic: local environmental context

text: aquatic metagenome

characteristic: organism

text: aquatic metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

text: public

text: Barley

characteristic: common name

text: RNA seq data from seedling crown tissue of the barley genotype Paloma. 1 cm of tissue above the shoot base was harvested from three replicate plants per genotype when plants were 1 week old.

characteristic: description

text: 1 week old plants

text: Paloma

characteristic: genotype

text: Growth chamber at 20°C with 16 hours of light

characteristic: growth condition

text: Saint Paul, MN, United States of America

characteristic: location

text: Hordeum vulgare

text: 1 cm of seedling crown tissue

characteristic: organism part

text: Spring 2020

characteristic: sampling time point

text: Hordeum vulgare

characteristic: title


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Barley

text: RNA seq data from seedling root tissue of the barley genotype Paloma. The longest root was harvested from three replicate plants per genotype when plants were 1 week old.

text: 1 week old plants

text: Paloma

text: Hordeum vulgare

text: Seedling root tissue

text: Spring 2020

text: Hordeum vulgare


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

text: Barley

text: RNA seq data from seedling crown tissue of the barley genotype Velvet. 1 cm of tissue above the shoot base was harvested from three replicate plants per genotype when plants were 1 week old.

text: 1 week old plants

text: Velvet

text: Hordeum vulgare

characteristic: organism

text: 1 cm of seedling crown tissue

text: Spring 2020

text: Hordeum vulgare


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

text: public

text: Barley

characteristic: common name

text: RNA seq data from seedling root tissue of the barley genotype Velvet. The longest root was harvested from three replicate plants per genotype when plants were 1 week old.

text: 1 week old plants

text: Velvet

text: Hordeum vulgare

text: Seedling root tissue

text: Spring 2020

text: Hordeum vulgare


text: IPK-Gatersleben

text: public

text: Barley

text: RNA seq data from seedling crown tissue of the barley genotype Mala. 1 cm of tissue above the shoot base was harvested from three replicate plants per genotype when plants were 1 week old.

characteristic: description

text: 1 week old plants

text: Mala

characteristic: genotype

characteristic: growth condition

text: Hordeum vulgare

text: 1 cm of seedling crown tissue

text: Spring 2020

text: Hordeum vulgare


text: IPK-Gatersleben

text: public

text: Barley

text: RNA seq data from seedling root tissue of the barley genotype Mala. The longest root was harvested from three replicate plants per genotype when plants were 1 week old.

text: 1 week old plants

text: Mala

characteristic: location

text: Hordeum vulgare

text: Seedling root tissue

characteristic: organism part

text: Spring 2020

characteristic: sampling time point

text: Hordeum vulgare


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:RIVM - National Institute for Public Health and the Environment

text: Netherlands

characteristic: country

text: Sheep/Goat

characteristic: host

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RIVM - National Institute for Public Health and the Environment

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Netherlands

text: Human

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Netherlands

text: Human

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Derby


text: public

text: Netherlands

text: Human

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport


text: public

text: Netherlands

text: Horses/Donkeys

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: public

text: Netherlands

text: Sheep/Goat

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: public

text: Netherlands

text: Broilers

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: public

text: Netherlands

text: Human

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: public

text: Netherlands

text: Cattle

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: public

text: Netherlands

text: Pigs

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: public

text: Netherlands

text: Human

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: mTyphimurium


text: public

text: Netherlands

text: Cattle

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: mTyphimurium


text: Mona Holberg-Petersen, Lise Andresen, Cathrine Fladeby, Mariann Nilsen, Teodora Plamenova Ribarska, Pål Marius Bjørnstad, Gregor D. Gilfillan, Arvind Yegambaram Meenakshi Sundaram, Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Pedersen Benedikte Nevjen, Line Victoria Moen, Rasmus Riis Kopperud, Hilde Vollan, Olav Hungnes, Karoline Bragstad

characteristic: Authors

characteristic: GISAID Accession ID

text: public

text: SARS-CoV-2/human/Norway/OUS-17883/2021/1

tag: Namespace:Norwegian Institute of Public Health (NIPH)

text: ELIXIR-Norway

characteristic: broker name

text: Oslo University Hospital, Department of Microbiology ; P.O.Box 4956 Nydalen, N-0424 Oslo, Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Norwegian Institute of Public Health (NIPH)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17348/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: Authors

characteristic: GISAID Accession ID

text: public

text: SARS-CoV-2/human/Norway/OUS-17893/2021/1

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17879/2021/1

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17312/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17881/2021/1

text: ELIXIR-Norway

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17316/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17831/2021/1

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17803/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17325/2021/1

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17326/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17265/2021/1

text: ELIXIR-Norway

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17327/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


text: Mona Holberg-Petersen, Lise Andresen, Cathrine Fladeby, Mariann Nilsen, Teodora Plamenova Ribarska, Pål Marius Bjørnstad, Gregor D. Gilfillan, Arvind Yegambaram Meenakshi Sundaram, Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Pedersen Benedikte Nevjen, Line Victoria Moen, Rasmus Riis Kopperud, Hilde Vollan, Olav Hungnes, Karoline Bragstad

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17330/2021/1

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17334/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

text: Oslo University Hospital, Department of Microbiology ; P.O.Box 4956 Nydalen, N-0424 Oslo, Norway

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Norwegian Institute of Public Health (NIPH)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17336/2021/1

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17314/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17329/2021/1

text: ELIXIR-Norway

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17271/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17270/2021/1

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17267/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Viken

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SARS-CoV-2/human/Norway/OUS-17882/2021/1

text: ELIXIR-Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SARS-CoV-2/human/Norway/OUS-17889/2021/1

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


text: Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Engebretsen Serina Beate, Pedersen Benedikte Nevjen, Line Victoria Moen, Hilde Nordby Falkenhaug, Debech Nadia, Atiya R Ali, Marie Paulsen Madsen, Rasmus Riis Kopperud, Hilde Vollan, Karoline Bragstad, Olav Hungnes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELIXIR-Norway

text: NA ; NA

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Viken

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

text: NA ; NA

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELIXIR-Norway

characteristic: broker name

text: NA ; NA

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Vestfold og Telemark

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

text: NA ; NA

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Agder

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELIXIR-Norway

text: NA ; NA

text: not provided

text: Norway

text: Troms og Finnmark

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host-associated


characteristic: Authors

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: NA ; NA

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Trondelag

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELIXIR-Norway

text: NA ; NA

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Vestland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR3357530 of study ERP115625.

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

text: The integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs) linked to reconstructed full-length 16S rRNA gene sequences

characteristic: project name

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7_49_ChR7ce.9_1677235609


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Lachnospiraceae bacterium

characteristic: organism

text: Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7_49_ChR7ce.10_1677235609

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7_49_ChR7ce.13_1677235610


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Porphyromonadaceae bacterium UBA3276

characteristic: organism

text: Porphyromonadaceae bacterium UBA3276

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7_49_ChR7ce.16_1677235610

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7_49_ChR7ce.18_1677235610


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7_49_ChR7ce.19_1677235611

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7_49_ChR7ce.23_1677235611


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR3357527 of study ERP115625.

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Porphyromonadaceae bacterium UBA7095

characteristic: organism

text: Porphyromonadaceae bacterium UBA7095

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.1_1677235611

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Porphyromonadaceae bacterium UBA7114

characteristic: project name

characteristic: sample derived from

text: Porphyromonadaceae bacterium UBA7114

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.3_1677235612


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Porphyromonadaceae bacterium UBA7167

characteristic: organism

text: Porphyromonadaceae bacterium UBA7167

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.4_1677235612

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Kineothrix sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Kineothrix sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.5_1677235613


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Porphyromonadaceae bacterium UBA7043

characteristic: organism

text: Porphyromonadaceae bacterium UBA7043

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.7_1677235614

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Enterorhabdus sp. NM05_H27

characteristic: project name

characteristic: sample derived from

text: Enterorhabdus sp. NM05_H27

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.8_1677235615


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Muribaculum sp.

characteristic: organism

text: uncultured Muribaculum sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.9_1677235615

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: bacterium 1xD42-87

text: The integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs) linked to reconstructed full-length 16S rRNA gene sequences

characteristic: project name

characteristic: sample derived from

text: bacterium 1xD42-87

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.13_1677235616


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.15_1677235616

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Desulfovibrio sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Desulfovibrio sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.16_1677235617


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Muribaculaceae bacterium Isolate-084 (Janvier)

characteristic: organism

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.19_1677235621

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroidales bacterium M1

characteristic: project name

characteristic: sample derived from

text: Bacteroidales bacterium M1

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.20_1677235621


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Dorea sp.

characteristic: organism

text: uncultured Dorea sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.23_1677235621

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR3357527 of study ERP115625.

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: Clostridia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.24_1677235621


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.32_1677235622

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.33_1677235622


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Hungatella sp.

characteristic: organism

text: uncultured Hungatella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.34_1677235624

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.36_1677235624


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Christensenella sp.

characteristic: organism

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.41_1677235624

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.47_1677235625


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Bacteroidales bacterium

characteristic: organism

text: The integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs) linked to reconstructed full-length 16S rRNA gene sequences

text: Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.49_1677235625

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.50_1677235626


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Bacteroides sp.

characteristic: organism

text: uncultured Bacteroides sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.52_1677235626

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Prevotella sp. PCHR

characteristic: project name

characteristic: sample derived from

text: Prevotella sp. PCHR

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.53_1677235626


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Lachnospiraceae bacterium

characteristic: organism

text: Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.55_1677235627

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Muribaculaceae bacterium

characteristic: project name

characteristic: sample derived from

text: Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.56_1677235627


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Bacteroidales bacterium

characteristic: organism

text: Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.57_1677235628

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR3357527 of study ERP115625.

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.62_1677235628


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Porphyromonadaceae bacterium UBA3276

characteristic: organism

text: Porphyromonadaceae bacterium UBA3276

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.64_1677235629

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Clostridiaceae bacterium

characteristic: project name

characteristic: sample derived from

text: Clostridiaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.68_1677235629


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Odoribacter sp.

characteristic: organism

text: uncultured Odoribacter sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.74_1677235629

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.75_1677235630


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.78_1677235630

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.82_1677235630


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Christensenella sp.

characteristic: organism

text: The integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs) linked to reconstructed full-length 16S rRNA gene sequences

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.85_1677235631

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.87_1677235632


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Porphyromonadaceae bacterium UBA7145

characteristic: organism

text: Porphyromonadaceae bacterium UBA7145

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.88_1677235632

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.97_1677235633


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Muribaculaceae bacterium

characteristic: organism

text: Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.99_1677235633

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Dorea sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Dorea sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.105_1677235633


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.106_1677235634

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR3357527 of study ERP115625.

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Porphyromonadaceae bacterium UBA7088

characteristic: project name

characteristic: sample derived from

text: Porphyromonadaceae bacterium UBA7088

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.108_1677235634


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

text: mouse digestive system

text: not provided

characteristic: collection date

text: CheckM

text: feces

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: mouse gut

text: mouse gut metagenome

text: Limosilactobacillus reuteri

characteristic: organism

text: Limosilactobacillus reuteri

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ChR7-11_ch1x9.110_1677235634

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: metaSPAdes

text: default

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: mouse gut

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ChR7-11_ch1x9.115_1677235634