characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Rotterdam wastewater monitoring team

text: public

tag: Namespace:Rotterdam wastewater monitoring team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

characteristic: collection date

text: Rotterdam wastewater monitoring team

characteristic: collector name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Rotterdam, Everlo-Waalhaven

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: wasterwater treatment plant at Everlo-Waalhaven

characteristic: name of the sampling site

text: RT-PCR

characteristic: nucleic acid amplification

text: RNA was isolated with the Biomerieux Nuclisens kit (Biomerieux, Amersfoort, the Netherlands) in combination with the semi-automated KingFisher mL (Thermo Scientific, Bleiswijk, The Netherlands) purification system to extract RNA from Centricon concentrates as previously described (Stinear et al. 1996, 10.1128/aem.62.9.3385-3390.1996; Heijnen et al. 2011, 10.2166/wh.2011.019).

characteristic: nucleic acid extraction

text: wastewater metagenome

text: wastewater metagenome

text: municipal (and industrial) wastewater treatment plant

characteristic: sewage type

characteristic: surveillance target

text: Rotterdam wastewater sample sequencing


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Rotterdam wastewater monitoring team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: Rotterdam wastewater monitoring team

text: Netherlands

text: Rotterdam, Wolphaertsbocht

text: metagenome

text: wasterwater treatment plant at Wolphaertsbocht

text: RT-PCR

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: Rotterdam wastewater sample sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Rotterdam wastewater monitoring team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

characteristic: collection date

text: Rotterdam wastewater monitoring team

characteristic: collector name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Rotterdam, Heemraadsplein

characteristic: geographic location (region and locality)

text: metagenome

text: wasterwater treatment plant at Heemraadsplein

text: RT-PCR

text: wastewater metagenome

text: wastewater metagenome

text: Rotterdam wastewater sample sequencing


characteristic: ENA-CHECKLIST

text: Rotterdam wastewater monitoring team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: Rotterdam wastewater monitoring team

text: Netherlands

text: Rotterdam, Pretorialaan

text: metagenome

characteristic: investigation type

text: wasterwater treatment plant at Pretorialaan

characteristic: name of the sampling site

text: RT-PCR

characteristic: nucleic acid amplification

characteristic: nucleic acid extraction

text: wastewater metagenome

text: wastewater metagenome

characteristic: sewage type

characteristic: surveillance target

text: Rotterdam wastewater sample sequencing


characteristic: External Id

text: Rotterdam wastewater monitoring team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: Rotterdam wastewater monitoring team

text: Netherlands

text: Rotterdam, Bergschenhoek

text: metagenome

text: wasterwater treatment plant at Bergschenhoek

text: RT-PCR

text: wastewater metagenome

text: wastewater metagenome

text: Rotterdam wastewater sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Rotterdam wastewater monitoring team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

characteristic: collection date

text: Rotterdam wastewater monitoring team

characteristic: collector name

text: Netherlands

text: Rotterdam, Katendrecht

text: metagenome

text: wasterwater treatment plant at Katendrecht

text: RT-PCR

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: Rotterdam wastewater sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

text: Rotterdam wastewater monitoring team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: Rotterdam wastewater monitoring team

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Rotterdam, Ommoord

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: wasterwater treatment plant at Ommoord

characteristic: name of the sampling site

text: RT-PCR

characteristic: nucleic acid amplification

characteristic: nucleic acid extraction

text: wastewater metagenome

text: wastewater metagenome

text: Rotterdam wastewater sample sequencing


characteristic: External Id

text: Rotterdam wastewater monitoring team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: Rotterdam wastewater monitoring team

text: Netherlands

text: Rotterdam, Pretorialaan-Zuidplein

text: metagenome

text: wasterwater treatment plant at Pretorialaan-Zuidplein

text: RT-PCR

text: wastewater metagenome

text: wastewater metagenome

characteristic: sewage type

characteristic: surveillance target

text: Rotterdam wastewater sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Rotterdam wastewater monitoring team

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

characteristic: collection date

text: Rotterdam wastewater monitoring team

characteristic: collector name

text: Netherlands

text: Rotterdam, Rozenburg

text: metagenome

text: wasterwater treatment plant at Rozenburg

text: RT-PCR

text: wastewater metagenome

text: wastewater metagenome

text: Rotterdam wastewater sample sequencing


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh

unit: day

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Livers from P15 male C3H/HeOuJ mice were isolated and flash frozen at -80°C. Samples were treated as previously described in Omni-ATAC protocol (Corces et al. 2017), with minor modifications to the nuclear isolation steps (in Step 1, 1 ml of 1× homogeniser buffer was used instead of 2 ml; in Step 4, douncing was performed with 30 strokes instead of 20). ATAC-seq was performed as described previously (Corces et al. 2017).

characteristic: description

text: infant

characteristic: developmental stage

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: infant

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: cortical collecting duct

text: house mouse

text: Normoxia replicate 1

text: Mus musculus

text: Mus musculus


text: SIB

text: public

text: cortical collecting duct

text: house mouse

characteristic: common name

text: Normoxia replicate 2

characteristic: description

text: Mus musculus

text: Mus musculus


text: SIB

text: public

text: cortical collecting duct

text: house mouse

text: Normoxia replicate 3

text: Mus musculus

characteristic: organism

text: Mus musculus


text: SIB

text: public

text: cortical collecting duct

text: house mouse

text: Hypoxia replicate 1

text: Mus musculus

text: Mus musculus


text: SIB

text: public

text: cortical collecting duct

text: house mouse

text: Hypoxia replicate 2

text: Mus musculus

text: Mus musculus


text: SIB

text: public

text: cortical collecting duct

text: house mouse

text: Hypoxia replicate 3

text: Mus musculus

text: Mus musculus


text: Friedrich-Loeffler-Institute

text: public

text: IZW Berlin

characteristic: collecting institution

text: IZW Berlin

characteristic: collector name

text: West Nile virus

text: Captive zoo bird: Chinese merganser spleen, sample #C4

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin

characteristic: geographic location (region and locality)

text: Chinese merganser

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Mergus squamatus

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: spleen

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

characteristic: common name

text: Wild bird: Blue tit organ pool, sample #1

text: Germany

text: Berlin-Köpenick

text: Blue tit

text: Death

text: Deceased

text: Cyanistes caeruleus

text: not provided

text: organ pool

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

text: LHL Gießen

characteristic: collecting institution

text: LHL Gießen

characteristic: collector name

text: West Nile virus

text: Captive zoo bird: Snowy owl liver, sample #2

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Thuringia-Erfurt

characteristic: geographic location (region and locality)

text: Snowy owl

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Bubo scandiacus

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: liver

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TLV Bad Langensalza

text: TLV Bad Langensalza

text: West Nile virus

text: Captive zoo bird: Snowy owl liver, sample #3

text: Germany

text: Thuringia-Erfurt

text: Snowy owl

text: Death

text: Deceased

text: Bubo scandiacus

text: not provided

characteristic: isolate

text: liver

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LUA Leipzig

characteristic: collecting institution

text: LUA Leipzig

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Northern Goshawk brain, sample #4

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Leipzig

characteristic: geographic location (region and locality)

text: Northern Goshawk

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Accipiter gentilis

text: not provided

text: brain

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Hobby bird: Bohemian Waxwing liver, sample #5

text: Germany

text: Brandenburg-Forst-Lausitz

text: Bohemian Waxwing

text: Death

text: Deceased

text: Bombycilla garrulus

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: liver

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Hobby bird: Little owl liver, sample #6

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Brandenburg-Beelitz

characteristic: geographic location (region and locality)

text: Little owl

text: Death

text: Deceased

text: Athene noctua

text: not provided

characteristic: isolate

text: liver

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Northern Goshawk brain, sample #7

text: Germany

text: Berlin-Berlin-Mahlsdorf

text: Northern Goshawk

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Accipiter gentilis

text: not provided

text: brain

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: TLV Bad Langensalza

characteristic: collecting institution

text: TLV Bad Langensalza

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Captive zoo bird: Flamingo brain, sample #8

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Thuringia-Erfurt

characteristic: geographic location (region and locality)

text: Flamingo

text: Death

text: Deceased

text: Phoenicopterus sp.

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LAV Stendal

text: LAV Stendal

text: West Nile virus

text: Captive zoo bird: Flamingo kidney, sample #9

text: Germany

text: Saxony-Anhalt-Bernburg-Saale

text: Flamingo

text: Death

text: Deceased

text: Phoenicopterus sp.

text: not provided

characteristic: isolate

text: kidney

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IZW Berlin

characteristic: collecting institution

text: IZW Berlin

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Captive zoo bird: Chilean Flamingo spleen, sample #10

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Friedrichsfelde

characteristic: geographic location (region and locality)

text: Chilean Flamingo

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Phoenicopterus chilensis

text: not provided

text: spleen

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TLV Bad Langensalza

text: TLV Bad Langensalza

text: West Nile virus

text: Wild bird: Eurasian jay brain, sample #11

text: Germany

text: Thuringia-Gera

text: Eurasian jay

text: Death

text: Deceased

text: Garrulus glandarius

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LAV Stendal /TAP Mensing

characteristic: collecting institution

text: LAV Stendal /TAP Mensing

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Hobby bird: Snowy Owl brain, sample #12

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Anhalt-Magdeburg

characteristic: geographic location (region and locality)

text: Snowy Owl

text: Death

text: Deceased

text: Bubo scandiacus

text: not provided

characteristic: isolate

text: brain

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Northern Goshawk brain, sample #13

text: Germany

text: Berlin-Biesdorf

text: Northern Goshawk

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Accipiter gentilis

text: not provided

text: brain

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Northern Goshawk brain, sample #14

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Brandenburg-Ahrensfelde

characteristic: geographic location (region and locality)

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Blue tit brain + liver, sample #15

text: Germany

text: Berlin- Berlin

text: Blue tit

text: Death

text: Deceased

text: Cyanistes caeruleus

text: not provided

characteristic: isolate

text: brain + liver

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LUA Leipzig

characteristic: collecting institution

text: LUA Leipzig

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Blue tit organ pool, sample #16

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Leipzig

characteristic: geographic location (region and locality)

text: Blue tit

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Cyanistes caeruleus

text: not provided

text: organ pool

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Hobby bird: Little owl brain, sample #17

text: Germany

text: Brandenburg-Michendorf

text: Little owl

text: Death

text: Deceased

text: Athene noctua

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Northern Goshawk brain, sample #18

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Daumstraße-Haselhorst

characteristic: geographic location (region and locality)

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

text: not provided

characteristic: isolate

text: brain

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Northern Goshawk brain, sample #19

text: Germany

text: Berlin-Luckenwalder Str. 34-Hellersdorf

text: Northern Goshawk

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Accipiter gentilis

text: not provided

text: brain

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Northern Goshawk brain, sample #20

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Berliner Str. 64-Zehlendorf.

characteristic: geographic location (region and locality)

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Blue tit liver + kidney, sample #21

text: Germany

text: Berlin-Oberschöneweide

text: Blue tit

text: Death

text: Deceased

text: Cyanistes caeruleus

text: not provided

characteristic: isolate

text: liver

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LAV Stendal /TAP Mensing

characteristic: collecting institution

text: LAV Stendal /TAP Mensing

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Hobby bird: Snowy Owl liver, sample #22

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Anhalt-Magdeburg

characteristic: geographic location (region and locality)

text: Snowy owl

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Bubo scandiacus

text: not provided

text: liver

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LAV Stendal

text: LAV Stendal

text: West Nile virus

text: Captive zoo bird: Flamingo brain+liver, sample #23

text: Germany

text: Saxony-Anhalt-Halle-Saale

text: Flamingo

text: Death

text: Deceased

text: Phoenicopterus sp.

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain + liver

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IZW Berlin

characteristic: collecting institution

text: IZW Berlin

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Captive zoo bird: American Flamingo cerebrum, sample #24

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Friedrichsfelde

characteristic: geographic location (region and locality)

text: American Flamingo

text: Death

text: Deceased

text: Phoenicopterus ruber

text: not provided

characteristic: isolate

text: cerebrum

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LUA Leipzig

text: LUA Leipzig

text: West Nile virus

text: Wild birds: Buzzard brain, #25

text: Germany

text: Saxony-Leipzig

text: Buzzard

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Buteo sp.

text: not provided

text: brain

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LUA Dresden

characteristic: collecting institution

text: LUA Dresden

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Great tit brain + liver, #26

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Bad Düben

characteristic: geographic location (region and locality)

text: Great tit

text: Death

text: Deceased

text: Parus major

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Northern Goshawk brain, sample #27

text: Germany

text: Berlin-Treptow

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

text: not provided

characteristic: isolate

text: brain

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Captive zoo bird: Flamingo liver, sample #28

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Berlin

characteristic: geographic location (region and locality)

text: Flamingo

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Phoenicopterus sp.

text: not provided

text: liver

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LUA Leipzig

text: LUA Leipzig

text: West Nile virus

text: Hobby bird: Canary liver+kidney, sample #29

text: Germany

text: Saxony-Anhalt-Kabelsketal

text: Canary

text: Death

text: Deceased

text: Serinus canaria forma domestica

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: liver

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LUA Leipzig

characteristic: collecting institution

text: LUA Leipzig

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Captive zoo bird: Chilean Flamingo brain, sample #30

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Leipzig

characteristic: geographic location (region and locality)

text: Chilean Flamingo

text: Death

text: Deceased

text: Phoenicopterus chilensis

text: not provided

characteristic: isolate

text: brain

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LUA Dresden

text: LUA Dresden

text: West Nile virus

text: Wild bird: House sparrow brain, #31

text: Germany

text: Saxony-Schkeuditz

text: House sparrow

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Passer sp.

text: not provided

text: brain

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Uni Leipzig, Institut für Virologie

characteristic: collecting institution

text: Uni Leipzig, Institut für Virologie

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Horse cerebellum, #32

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Chemnitz-Wittgensdorf

characteristic: geographic location (region and locality)

text: Horse

text: Death

text: Deceased

text: Equus caballus

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: cerebellum

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LAV Stendal

text: LAV Stendal

text: West Nile virus

text: Captive zoo bird: Alpine chough Homogenate Suspension, #33

text: Germany

text: Saxony-Anhalt-Halle-Saale

text: Alpine chough

text: Death

text: Deceased

text: Pyrrhocorax graculus

text: not provided

characteristic: isolate

text: Homogenate Suspension

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: TLV Bad Langensalza

characteristic: collecting institution

text: TLV Bad Langensalza

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Blue tit Homogenate Suspension, sample #34

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Thuringia-Gera

characteristic: geographic location (region and locality)

text: Blue tit

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Cyanistes caeruleus

text: not provided

text: Homogenate Suspension

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Northern Goshawk brain, sample #35

text: Germany

text: Berlin-Spandau

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: brain

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Northern Goshawk brain, sample #36

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Reinickendorf

characteristic: geographic location (region and locality)

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

text: not provided

characteristic: isolate

text: brain

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Northern Goshawk liver, sample #37

text: Germany

text: Berlin-Schmöckwitzer Forst

text: Northern Goshawk

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Accipiter gentilis

text: not provided

text: liver

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Northern Goshawk liver, sample #38

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Marzahn

characteristic: geographic location (region and locality)

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: liver

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LLBB Berlin-Brandenburg

text: LLBB Berlin-Brandenburg

text: West Nile virus

text: Wild bird: Northern Goshawk brain, sample #39

text: Germany

text: Berlin-Mitte

text: Northern Goshawk

text: Death

text: Deceased

text: Accipiter gentilis

text: not provided

characteristic: isolate

text: brain

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LLBB Berlin-Brandenburg

characteristic: collecting institution

text: LLBB Berlin-Brandenburg

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Wild bird: Hooded Crow liver, sample #40

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Berlin-Steglitz-Zehlendorf

characteristic: geographic location (region and locality)

text: Hooded Crow

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Corvus corone cornix

text: not provided

text: liver

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LAV Stendal

text: LAV Stendal

text: West Nile virus

text: Captive zoo bird: Chilean Flamingo spleen, sample #41

text: Germany

text: Saxony-Anhalt-Bernburg- Saale

text: Chilean Flamingo

text: Death

text: Deceased

text: Phoenicopterus chilensis

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: spleen

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LAV Stendal

characteristic: collecting institution

text: LAV Stendal

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Captive zoo bird: Swift parrot brain+liver, sample #42

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Saxony-Anhalt-Halle-Saale

characteristic: geographic location (region and locality)

text: Swift parrot

text: Death

text: Deceased

text: Lathamus discolor

text: not provided

characteristic: isolate

text: brain + liver

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LAV Stendal

text: LAV Stendal

text: West Nile virus

text: Horse cerebellum + spinal cord, sample #43

text: Germany

text: Saxony-Anhalt- Calvörde-OT Berenbrock Landkreis Börde

text: Horse

characteristic: host common name

text: Death

characteristic: host disease outcome

text: Deceased

characteristic: host health state

text: Equus caballus

text: not provided

text: cerebellum + spinal cord

text: West Nile virus

text: Dead

text: West Nile virus

characteristic: title


text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: LUA Dresden

characteristic: collecting institution

text: LUA Dresden

characteristic: collector name

text: West Nile virus

characteristic: common name

text: Horse pooled organ mix, sample #C5

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Brandenburg-Plessa OT Kahla

characteristic: geographic location (region and locality)

text: Horse

text: Death

text: Deceased

text: Equus caballus

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: pooled organ mix

text: West Nile virus

characteristic: organism

text: Dead

text: West Nile virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TLV Bad Langensalza

text: TLV Bad Langensalza

text: West Nile virus

text: Wild bird: Blue tit Homogenate Suspension, sample #46

text: Germany

text: Thuringia-Bad Sulza

text: Blue tit

text: Death

text: Deceased

text: Cyanistes caeruleus

text: not provided

characteristic: isolate

text: Homogenate Suspension

characteristic: isolation source host-associated

text: West Nile virus

text: Dead

characteristic: sample capture status

text: West Nile virus

characteristic: virus identifier


text: public

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

text: Portugal

characteristic: country

text: Mycobacterium tuberculosis

text: Sensitive

characteristic: resistance profile

text: Mycobacterium tuberculosis

characteristic: title


characteristic: ENA-CHECKLIST

text: LIV

text: public

text: not collected

text: 34A; 34A_MWO; 1_seqloc_C10_Liverpool1_C10_34A_CGCTACGATT-GAACTTGCGG_L002

characteristic: description

text: Yes

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: 53.41 2.99

characteristic: lat lon

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LIV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

text: 46A; 46A_MWO; 1_seqloc_D10_Liverpool1_D10_46A_ATTGCATAGT-GGACTTATGG_L002

text: Yes

text: United Kingdom

text: 53.41 2.99


text: LIV

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: 14390; 14390_FZH; 5_seqloc_A7_185_A1_14390_TCCTCCGGTT-TACGCCGTAT_L002

text: Yes

text: United Kingdom

text: 53.41 2.99


text: SC

text: public

text: Escherichia_coli_102606-sc-2012-01-13T20:11:48Z-1332545

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Gambia

text: Not known

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: faeces

characteristic: isolation source

text: Escherichia albertii

text: Escherichia albertii

text: Not known

characteristic: serovar

characteristic: strain


E-MTAB-11787:Sample 11

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11787:Sample 11

tag: Namespace:Center for medical genetics, Universitair Ziekenhuis Brussel, UZ Brussel

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: LP-1 cells were cultured for 6 h and 24 h with or without 25 µM of tasquinimod. Total RNA was extracted and purified using the NucleoSpin RNA plus kit (Macherey-Nagel, Düren, Germany). The RNA sequencing (RNA-seq) library preparation was performed with 150 ng RNA using the Illumina KAPA RNA HyperPrep kit with RiboErase (HMR) (Illumina, Cambridge, UK).

characteristic: description

text: adult

characteristic: developmental stage

text: multiple myeloma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 11

characteristic: title


E-MTAB-11787:Sample 7

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for medical genetics, Universitair Ziekenhuis Brussel, UZ Brussel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11787:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 7


E-MTAB-11787:Sample 9

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11787:Sample 9

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 9


E-MTAB-11787:Sample 1

text: public

text: E-MTAB-11787:Sample 1

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: multiple myeloma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 1


E-MTAB-11787:Sample 3

text: public

text: E-MTAB-11787:Sample 3

text: ArrayExpress

text: human

text: adult

text: multiple myeloma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 3


E-MTAB-11787:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11787:Sample 5

text: ArrayExpress

text: human

text: adult

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-11787:Sample 10

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11787:Sample 10

text: ArrayExpress

text: human

text: adult

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 10


E-MTAB-11787:Sample 12

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11787:Sample 12

text: ArrayExpress

text: human

text: adult

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 12


E-MTAB-11787:Sample 8

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11787:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 8


E-MTAB-11787:Sample 2

text: public

text: E-MTAB-11787:Sample 2

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 2


E-MTAB-11787:Sample 4

text: public

text: E-MTAB-11787:Sample 4

text: ArrayExpress

text: human

text: adult

text: multiple myeloma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 4


E-MTAB-11787:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11787:Sample 6

text: ArrayExpress

text: human

text: adult

text: multiple myeloma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 6


E-MTAB-11788:Sample 1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11788:Sample 1

tag: Namespace:1) Department of Biology, Philipps-Universitat Marburg 2) Center for Synthetic Microbiology (SYNMIKRO), Philipps-Universitat Marburg

text: ArrayExpress

text: Monoclonal ANTI-FLAG® M2 antibody, Sigma-Aldrich

characteristic: chip antibody

text: Protocols: Cells were lysed and DNA fragmented (~500 bp) by sonication in a Bioruptor Plus (Diagenode) for 48 x 30 s and 30 s cooling. 300 µl sonicated product was mixed with 3 ml IP-buffer and 1 mM PMFS and centrifuged at full speed at 4°C for 30 min. 100 µl supernatant were taken and frozen at -20°C as a control. Clr-CF was immunoprecipitated with ANTI-FLAG M2 Affinity Gel (Sigma-Aldrich). The protein was eluted with 100 µl 3x FLAG Peptide elution buffer for 1 h at 4°C. Cross-links of control and ChIP-DNA were removed with 200 µM NaCl and proteins and RNA were degraded with proteinase K and RNAse A overnight at 65°C. Samples were checked in a western blot with monoclonal anti-FLAG M2-peroxidase (HRP) antibody (1 : 1000). Cultures of Rm2011 ∆clr carrying the clr-FLAG overexpression construct pWBT clr-CF were grown in 60 ml of TY or MOPS in 500 ml flasks each supplemented with either 400 µM 3’,5’-cAMP or 3’,5’-cGMP and 500 µM IPTG. Upon reaching an OD600 of 0.6, cells were fixated with 1 % formaldehyde for 20 minutes at room temperature (RT). Fixation was quenched with 250 µM glycine for 20 minutes. Cell-pellets were resuspended in 300 µl IP-buffer (50 mM HEPES-KOH pH7.8; 150 mM NaCl, 1 mM EDTA, 1 % Triton X100, 0.1 % sodium deoxycholate, 0.1 % SDS) with 1 mM of phenylmethylsulfonyl fluoride (PMFS). DNA was purified with the QIAquick PCR kit. 10 ng DNA was taken for ChIP-Seq DNA library preparation and 2.5 ng for qPCR reaction. The DNA library preparation was carried out as described in Ford et al. (2014) with the adapter sequences 2, 4-7 and 12-14 compatible with Illumina’s TruSeq platform.

text: TY, cAMP 400µM, IPTG 500 µM

characteristic: growth condition

text: genomic DNA

characteristic: molecule

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

characteristic: strain

text: C-terminal 3xFLAG tag

characteristic: tag

text: Sample 1

characteristic: title

text: TY cAMP IP


E-MTAB-11788:Sample 3

characteristic: ENA-CHECKLIST

text: 1) Department of Biology, Philipps-Universitat Marburg 2) Center for Synthetic Microbiology (SYNMIKRO), Philipps-Universitat Marburg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11788:Sample 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: TY, cGMP 400µM, IPTG 500 µM

text: genomic DNA

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

text: C-terminal 3xFLAG tag

text: Sample 3

text: TY cGMP IP


E-MTAB-11788:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11788:Sample 5

text: ArrayExpress

characteristic: description

text: MOPS, cAMP 400µM, IPTG 500 µM

text: genomic DNA

text: Sinorhizobium meliloti

characteristic: organism

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

text: C-terminal 3xFLAG tag

text: Sample 5

text: MOPS cAMP IP


E-MTAB-11788:Sample 7

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11788:Sample 7

text: ArrayExpress

characteristic: chip antibody

text: MOPS, cGMP 400µM, IPTG 500 µM

text: genomic DNA

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

text: C-terminal 3xFLAG tag

text: MOPS cGMP IP

text: Sample 7


E-MTAB-11788:Sample 2

text: public

text: E-MTAB-11788:Sample 2

text: ArrayExpress

text: TY, cAMP 400µM, IPTG 500 µM

characteristic: growth condition

text: genomic DNA

characteristic: molecule

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

characteristic: strain

text: C-terminal 3xFLAG tag

text: Sample 2

text: TY cAMP control


E-MTAB-11788:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11788:Sample 4

text: ArrayExpress

text: TY, cGMP 400µM, IPTG 500 µM

text: genomic DNA

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

text: C-terminal 3xFLAG tag

characteristic: tag

text: Sample 4

characteristic: title

text: TY cGMP control


E-MTAB-11788:Sample 6

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11788:Sample 6

text: ArrayExpress

text: MOPS, cAMP 400µM, IPTG 500 µM

text: genomic DNA

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

text: C-terminal 3xFLAG tag

text: MOPS cAMP control

text: Sample 6


E-MTAB-11788:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-11788:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: MOPS, cGMP 400µM, IPTG 500 µM

text: genomic DNA

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Sinorhizobium meliloti

text: Rm2011 Δclr pWBT-clr-CF

text: C-terminal 3xFLAG tag

text: MOPS cGMP control

text: Sample 8


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Leishmania braziliensis

characteristic: common name

text: Brazil

characteristic: country

text: human

characteristic: host scientific name

text: disease: cutaneous leishmaniasis

text: lesion

text: Leishmania braziliensis

text: Leishmania braziliensis MHOM/BR/75/M2903

text: PacBio

characteristic: sample description

text: Leishmania braziliensis M2903


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Leishmania braziliensis

text: Brazil

text: human

text: disease: cutaneous leishmaniasis

text: lesion

text: Leishmania braziliensis

characteristic: organism

text: Leishmania braziliensis MHOM/BR/75/M2904

text: PacBio

text: Leishmania braziliensis M2904


characteristic: ENA-CHECKLIST

text: public

text: control RNAi

characteristic: RNA interference

tag: Namespace:European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen, The Netherlands

text: ArrayExpress

text: Protocols: Nematodes were grown at standard conditions at 20 C. Animals were age-synchronized by hypochlorite treatment, hatched over night in M9 buffer and subsequently cultured on Nematode Growth Medium (NGM) seeded with Escherichia coli strain OP50. On day 1 of adulthood (one day after larval stage L4), animals were transferred to NGM plates containing 5-fluoro-2’deoxy-uridine (FUDR) to prevent the offspring from growing. RNAi experiments were performed on NGM plates containing isopropylthio-β-D-galactoside (IPTG, 15mg/L) and 50μg/ml ampicillin. Plates were seeded with RNAi bacteria. Prior to the experiment, the plates were kept at room temperature for 2 days to allow the production of dsRNA by the bacteria. Plates were produced as fresh as possible (maximum 1 week before start of the experiment). Age-synchronized animals were either directly grown on RNAi food from larval stage L1 onwards or transferred to the RNAi treatment at larval stage L4 (indicated for specific experiments). This depended on a test run to see whether the RNAi treatment effected development. Animals of day 1 of adulthood (day after L4 stage) were transferred to RNAi plates containing FUDR to prevent the growth of the offspring. Animals for RNA isolation were collected on day 4 of adulthood in M9. Only samples from the same run were compared later. Animals were washed a few times and then snap frozen in liquid nitrogen. Total RNA was extracted using TRIzol Reagent (Life Technologies) according to the manufacturer’s description. The TruSeq Sample Preparation V2 Kit was used (Illumina) for polyA RNA sequencing.

characteristic: description

text: day 4 of adulthood

characteristic: developmental stage

text: kmo1 deletion

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen, The Netherlands

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: control RNAi

characteristic: SRA accession

text: ArrayExpress

text: day 4 of adulthood

text: kmo1 deletion

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: tdo2 RNAi

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: day 4 of adulthood

text: kmo1 deletion

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: External Id

text: public

text: control RNAi

text: ArrayExpress

text: day 4 of adulthood

text: tph1 deletion

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: INSDC center name

text: public

text: tdo2 RNAi

text: ArrayExpress

text: day 4 of adulthood

text: tph1 deletion

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: public

text: control RNAi

text: ArrayExpress

text: day 4 of adulthood

text: wild type genotype

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: ENA-CHECKLIST

text: public

text: tdo2 RNAi

text: ArrayExpress

text: day 4 of adulthood

text: wild type genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: Previously released as TB49 (Previous SRA# SRR6511598)

characteristic: comment

text: Portugal

characteristic: country

text: Mycobacterium tuberculosis

text: MR

characteristic: resistance profile

text: Mycobacterium tuberculosis


text: public

text: Portugal

text: Mycobacterium tuberculosis

text: MR

text: Mycobacterium tuberculosis


text: ZOOLOGICAL INSTITUTE KIEL

text: public

tag: Namespace:ZOOLOGICAL INSTITUTE KIEL

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: C. elegans natural microbiome


Diamante Virome1

text: UNIVERSIDAD DE BUENOS AIRES

text: public

text: Diamante Virome1

tag: Namespace:UNIVERSIDAD DE BUENOS AIRES

unit: mEq/L

characteristic: alkalinity

characteristic: collection date

text: Montane grasslands and shrublands

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

unit: m

characteristic: geographic location (altitude)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Catamarca

characteristic: geographic location (region and locality)

text: virus

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: metagenome

characteristic: pH

text: Diamante Virome Project

characteristic: project name

text: metagenome

text: Sequencing libraries were prepared using the Nextera library preparation kit from Promega and sequenced at 2x250bp using a Illumina MiSeq machine

characteristic: sequencing method

unit: ºC

characteristic: temperature

text: Diamante Virome


Yucra Metagenome Project1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DE BUENOS AIRES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Yucra Metagenome Project1

characteristic: Submitter Id

characteristic: collection date

text: The Pampas

text: Orchard

text: water

text: Argentina

text: metagenome

text: metagenome

characteristic: organism

text: Yucra Metagenome Project

text: metagenome

text: Illumina Hiseq

text: soil

characteristic: soil environmental package

text: Yucra Metagenome Project

characteristic: title


Severino Metagenome Project1

text: UNIVERSIDAD DE BUENOS AIRES

text: public

text: Severino Metagenome Project1

text: The Pampas

characteristic: environment (biome)

text: Orchard

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Severino Metagenome Project

characteristic: project name

text: metagenome

text: Illumina Hiseq

text: soil

text: Severino Metagenome Project


Pozo Barvo Metagenome Project1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DE BUENOS AIRES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pozo Barvo Metagenome Project1

text: Puna

text: Lake

text: water

text: Argentina

text: metagenome

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: metagenome

text: Pozo Barvo Metagenome Project

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: Pozo Barvo Metagenome Project


Diamante Metatranscriptome Project1

text: UNIVERSIDAD DE BUENOS AIRES

text: public

characteristic: SRA accession

text: Diamante Metatranscriptome Project1

characteristic: Submitter Id

characteristic: collection date

text: Puna

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

text: metatranscriptome

text: microbial mat/biofilm

text: metagenome

characteristic: organism

text: Diamante Metatranscriptome Project

text: metagenome

text: Illumina

text: Diamante Metatranscriptome Project

characteristic: title


Diamante Metagenome Project1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSIDAD DE BUENOS AIRES

text: public

text: Diamante Metagenome Project1

text: Puna

text: Lake

text: water

text: Argentina

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

text: metagenome

text: Diamante Metagenome Project

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: Diamante Metagenome Project


characteristic: External Id

text: MaizeGDB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: same as dev stage

characteristic: age

text: GRIN-Global

characteristic: biomaterial provider

text: maize

characteristic: common name

characteristic: cultivar

text: 2-Leaf (V2)

characteristic: dev stage

text: Inbred lines

characteristic: genotype

text: USA: Ames

text: Zea mays

text: wild type

characteristic: phenotype

text: tissue sample

characteristic: sample type

text: Zea mays

text: Monecious

characteristic: sex

text: Ames 27133

characteristic: temp

text: whole genome assembly of NAM founder line M162W

text: 48 hour dark treatment was done before tissue harvest to reduce carbohydrates, additional tissue was harvested after two new leaves emerged. Total of 35g tissue was harvested from each line for high molecular weight sequencing

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MaizeGDB

characteristic: INSDC center name

text: public

text: same as dev stage

text: GRIN-Global

text: maize

text: 2-Leaf (V2)

text: Inbred lines

text: USA: Ames

text: Zea mays

characteristic: organism

text: wild type

text: tissue sample

text: Zea mays

text: Monecious

text: Ames 27134

text: whole genome assembly of NAM founder line M37W

characteristic: title


text: MaizeGDB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: same as dev stage

characteristic: age

text: GRIN-Global

characteristic: biomaterial provider

text: maize

text: 2-Leaf (V2)

text: Inbred lines

text: USA: Ames

text: Zea mays

text: wild type

text: tissue sample

text: Zea mays

text: Monecious

text: Ames 19323

text: whole genome assembly of NAM founder line Oh43


text: MaizeGDB

text: public

text: same as dev stage

text: GRIN-Global

text: maize

characteristic: common name

characteristic: cultivar

text: 2-Leaf (V2)

characteristic: dev stage

text: Inbred lines

characteristic: genotype

text: USA: Ames

text: Zea mays

text: wild type

characteristic: phenotype

text: tissue sample

characteristic: sample type

text: Zea mays

text: Monecious

characteristic: sex

text: Ames 19288

text: whole genome assembly of NAM founder line Oh7B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Portugal

characteristic: country

text: Mycobacterium tuberculosis

text: Non-MDR

characteristic: resistance profile

text: Mycobacterium tuberculosis


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Pathology, University of Cambridge

characteristic: Submitter Id

unit: week

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: 2 weeks old arabidopsis seedlings were cultured in 17ºC and were either shifted to 27ºC or remain at 17ºC prior harvesting by snap freeze in liquid nitrogen liquid 1/2-MS media under constant light RNA were extracted by means of phenol-chloroform extraction. Adopted TrueSeq small RNA v2 for ribosome profiling and RNA-seq

characteristic: description

text: seedling

characteristic: developmental stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana

text: untreated

characteristic: stimulus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Pathology, University of Cambridge

text: public

characteristic: age

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: cultivar

text: seedling

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

text: untreated


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: thale cress

text: seedling

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

text: 27oC shift


text: UNIVERSITY OF KIEL

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF KIEL

characteristic: Submitter Id

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus


text: INTA

text: public

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marcos Juarez, Cordoba

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

unit: mm

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: organism

text: soil microbiome

characteristic: project name

unit: g

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

characteristic: soil_taxonomic/FAO classification


Halorubrum diamantensis DM21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DE BUENOS AIRES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Halorubrum diamantensis DM21

characteristic: Submitter Id

characteristic: collection date

text: Halorubrum diamantensis DM2 genome

characteristic: description

text: Puna

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: water

text: Argentina

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Halorubrum sp. DM2

text: Halorubrum diamantensis DM2 genome project

text: Halorubrum sp. DM2

text: Illumina MiSeq

characteristic: title


text: INTA

text: public

text: agricultural soil

text: temperate

text: agricultural

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Marcos Juarez, Cordoba

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

unit: % sand/silt/clay

characteristic: texture

text: jimena 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marcos Juarez, Cordoba

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

text: jimena 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Marcos Juarez, Cordoba

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture

text: jimena 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marcos Juarez, Cordoba

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

text: jimena 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Marcos Juarez, Cordoba

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture

text: jimena 5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marcos Juarez, Cordoba

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

text: jimena 6

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Marcos Juarez, Cordoba

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture

text: jimena 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marcos Juarez, Cordoba

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

text: jimena 8

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Marcos Juarez, Cordoba

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture

text: jimena 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marcos Juarez, Cordoba

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

text: jimena 10

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Marcos Juarez, Cordoba

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture

text: jimena 11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marcos Juarez, Cordoba

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

text: jimena 12

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Barrow, Buenos Aires

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture

text: jimena Barrow1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Barrow, Buenos Aires

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

text: jimena Barrow2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Barrow, Buenos Aires

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture

text: jimena Barrow3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Barrow, Buenos Aires

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INTA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agricutural experiment

characteristic: current land use

text: agricultural soil

text: temperate

text: agricultural

text: soil

text: Argentina

text: Pergamino, Buenos Aires

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mean annual and seasonal precipitation

characteristic: mean annual and seasonal temperature

text: soil metagenome

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina Miseq

text: soil

text: Chernozem

characteristic: soil type

text: Chernozem

characteristic: soil_taxonomic/FAO classification

text: clay silty loam

characteristic: texture


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INTA

text: public

text: agricutural experiment

text: agricultural soil

characteristic: description

text: temperate

characteristic: environment (biome)

text: agricultural

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Corral de Bustos, Cordoba

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Chernozem

text: Chernozem

text: clay silty loam

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UMCG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Netherlands

characteristic: country

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

text: IOA

text: public

text: green mud crab

characteristic: common name

text: China

characteristic: geographic location (country and/or sea)

text: Shajiang village

characteristic: geographic location (region and locality)

characteristic: height

characteristic: length

text: Scylla paramamosain

text: Fx

characteristic: population

text: Scylla paramamosain

text: female

characteristic: sex

text: Muscle (claw)

characteristic: weight

characteristic: width


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: green mud crab

text: China

text: Shajiang village

text: Scylla paramamosain

characteristic: organism

text: Fx

text: Scylla paramamosain

text: male

text: Muscle (claw)

characteristic: title


characteristic: ENA-LAST-UPDATE

text: IOA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: green mud crab

text: China

text: Longmen port

text: Scylla paramamosain

text: Gq

text: Scylla paramamosain

text: female

text: Muscle (claw)


text: IOA

text: public

text: green mud crab

characteristic: common name

text: China

characteristic: geographic location (country and/or sea)

text: Longmen port

characteristic: geographic location (region and locality)

characteristic: height

characteristic: length

text: Scylla paramamosain

text: Gq

text: Scylla paramamosain

text: male

text: Muscle (claw)


characteristic: ENA-CHECKLIST

text: IOA

text: public

text: green mud crab

text: China

text: Zhouxiang town

text: Scylla paramamosain

text: Zc

characteristic: population

text: Wrong species: S. olivacea

characteristic: remark

text: Scylla paramamosain

text: female

characteristic: sex

text: Muscle (claw)

characteristic: weight

characteristic: width


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: green mud crab

text: China

text: Zhouxiang town

text: Scylla paramamosain

characteristic: organism

text: Zc

text: Scylla paramamosain

text: female

text: Muscle (claw)

characteristic: title


characteristic: ENA-LAST-UPDATE

text: IOA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: green mud crab

characteristic: common name

text: China

text: Zhouxiang town

text: Scylla paramamosain

text: Zc

text: Scylla paramamosain

text: male

text: Muscle (claw)


characteristic: ENA-CHECKLIST

text: IOA

text: public

text: green mud crab

text: China

characteristic: geographic location (country and/or sea)

text: Zhouxiang town

characteristic: geographic location (region and locality)

characteristic: height

characteristic: length

text: Scylla paramamosain

text: Zc

characteristic: population

text: Wrong species: S. olivacea

text: Scylla paramamosain

text: male

text: Muscle (claw)


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOA

text: public

text: green mud crab

text: China

text: Qingshan port

text: Scylla paramamosain

text: Zn

text: Scylla paramamosain

text: female

characteristic: sex

text: Muscle (claw)

characteristic: weight

characteristic: width


characteristic: ENA-LAST-UPDATE

text: IOA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: green mud crab

text: China

text: Qingshan port

text: Scylla paramamosain

characteristic: organism

text: Zn

text: Scylla paramamosain

text: male

text: Muscle (claw)

characteristic: title