characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-40811651/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SG-SNRCI-HUG-40732337/2023

characteristic: isolate

text: active surveillance in response to outbreak

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-40838479/2023

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

tag: Namespace:Department of Evolutionary Anthropology, University of Vienna

characteristic: Submitter Id

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Ancient DNA


characteristic: External Id

text: Department of Evolutionary Anthropology, University of Vienna

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Ancient DNA

characteristic: title


text: Marine Biological Association

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: MARINE BIOLOGICAL ASSOCIATION

characteristic: barcoding center

text: COPO

text: JOANNA HARLEY | ANGELA WARD | TYRONE ROBERTS

text: MARINE BIOLOGICAL ASSOCIATION

characteristic: collecting institution

characteristic: collection date

text: PLY 97A

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Devon | Plymouth | Marine Biological Association

characteristic: geographic location (region and locality)

text: cultured

characteristic: habitat

text: MARINE BIOLOGICAL ASSOCIATION | MARINE BIOLOGICAL ASSOCIATION | MARINE BIOLOGICAL ASSOCIATION

text: Prorocentrum micans

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: United Kingdom | Cornwall | St. Germans River. (more commenly called the river Lynher)

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: DTOL

characteristic: project name

text: Cultured in f/2. filtered then pelleted

characteristic: sample collection device or method

text: Prorocentrum micans

text: NOT COLLECTED

characteristic: sex

text: f9479a3a-8d76-4015-a280-fa3ce3ef04d9-DTOL-specimen

characteristic: tolid

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Respiratory Medicine, NUTRIM -School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Center+, Maastricht, the Netherlands.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Respiratory Medicine, NUTRIM –School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Center+, Maastricht, the Netherlands.

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Immune competent, 11 weeks old male 129S2/Sv mice, were randomly allocated to either (1) sham control group or (2) tumor-bearing (OLCC) group. Syngeneic lung epithelium-derived adenocarcinoma cells (K-rasG12D; p53R172HΔG) were inoculated intrapulmonary into the left lung lobe of the mice. Body weight and food intake were measured daily. At baseline and weekly after surgery, grip strength was measured and tumor growth and muscle volume were assessed using micro cone beam CT imaging. After reaching predefined surrogate survival endpoint, animals were euthanized and skeletal muscles of the lower hind limbs were collected forRNA sequencing.Gastrocnemius muscle was collected and snap frozen in liquid nitrogen. Muscle was grinded into powder and homogenized in TRI Reagent by using a Mini bead beater (Cole Parmer) sample homogenizer, and total RNA was extracted. TRI Reagent (Sigma-Aldrich) was used according to the manufacturers’ protocol NEXTFLEX Poly (A) Beads 2.0 kit (PerkinElmer)

characteristic: description

text: adult

characteristic: developmental stage

characteristic: diet

text: lung cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: gastrocnemius

text: Mus musculus

text: male

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: gastrocnemius

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Vastus lateralis muscle biopsies of newly diagnosed treatment‐naïve NSCLC patients with cachexia (n = 8) and age‐matched and sex‐matched healthy controls (n = 8) were processed for RNA sequencing. Muscles were grinded into powder and homogenized in TRI Reagent by using a Mini bead beater (Cole Parmer) sample homogenizer, and total RNA was extracted. For mRNA expression analysis, TRI Reagent (Sigma-Aldrich) was used according to the manufacturers’ protocol. Pure, intact mRNA was isolated from 1 µg of total RNA using the NEXTFLEX Poly (A) Beads 2.0 kit (PerkinElmer). The purified mRNA was used to prepare directional, strand specific RNA libraries for sequencing using the NEXTFLEX Rapid Directional RNA-Seq kit 2.0 (PerkinElmer) according to manufacturer’s instruction. The NETFLEX RNA-Seq 2.0 Unique Dual Index Barcodes (PerkinElmer) were used as adapter. A Qubit fluorometer (Invitrogen) and the Agilent 4200 Tapestation system (Agilent Technologies) were used to measure the quantity and quality of the libraries. Equal amounts (1.6 nM) of libraries were pooled and sequenced using the S2 flow cell (200 cycles) of the Illumina NovaSeq 6000.

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: vastus lateralis

text: Homo sapiens

text: male


text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: vastus lateralis

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: adult

text: non-small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: vastus lateralis

text: Homo sapiens

text: male

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: adult

text: non-small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: vastus lateralis

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Fera Science Limited

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory B ; meat(s): pork

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: butcher's inspection block; material unspecified

characteristic: local environmental context

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: butcher's inspection block


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory B ; meat(s): pork

text: United Kingdom

text: restricted access

text: restricted access

text: loading deck of injector; material unspecified

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: loading deck of injector

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory B ; meat(s): pork ; Duplicate of AMR_MFB_005

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: injection conveyor; material unspecified; ENVO_03501356:conveyor equipment

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: injection conveyor


text: Fera Science Limited

text: public

text: factory B ; meat(s): pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: grading belt; material unspecified; ENVO_03501356:conveyor equipment; ENVO_03501362:belt conveyor system

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: grading belt


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory B ; meat(s): pork ; Duplicate of AMR_MFB_003

text: United Kingdom

text: restricted access

text: restricted access

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: injection conveyor after tumbler

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory B ; meat(s): none ; Control

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: paperwork desk; ENVO_01000585:desk; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: none. Location: desk


text: Fera Science Limited

text: public

text: factory B ; meat(s): none ; Control

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: primal metal detector; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: none. Location: primal metal detector


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory B ; meat(s): none ; Control

text: United Kingdom

text: restricted access

text: restricted access

text: table for salt-cure; ENVO_01000584:table; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: none. Location: table for salt-cure

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory B ; meat(s): pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: needle tenderiser conveyor, hard plastic; ENVO_03501356:conveyor equipment; ENVO_06105101:plastic

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: needle tenderiser conveyor


text: Fera Science Limited

text: public

text: factory B ; meat(s): pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: stringing conveyor belt, hard plastic; ENVO_03501283:conveyor belt; ENVO_06105101:plastic

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: stringing conveyor belt


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory B ; meat(s): pork

text: United Kingdom

text: restricted access

text: restricted access

text: trim-sorting table; ENVO_01000584:table; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: pork. Location: trim-sorting table

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory B ; meat(s): none ; solution in contact: brine

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: brine tap; ENVO_03600052: water tap; ENVO_03501216:stainless steel

text: factory metagenome

text: Pipe; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: none. Location: brine tap


text: Fera Science Limited

text: public

text: factory B ; meat(s): none

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: water point in air dryer corridor; ENVO_03600052: water tap; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Pipe; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: none. Location: water point in air dryer corridor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory B ; meat(s): none

text: United Kingdom

text: restricted access

text: restricted access

text: factory metagenome

characteristic: organism

text: Pipe; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory B ; meat(s): none

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: drain pipe in air dryer corridor, hard plastic; ENVO_01000924:drain; ENVO_06105101:plastic

text: factory metagenome

text: Pipe; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: none. Location: drain pipe air dryer corridor


text: Fera Science Limited

text: public

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory B ; meat(s): none

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: water point in lifting out room; ENVO_03600052:water tap; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Pipe; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant B. Meat processed at sampling location: none. Location: water point in lifting out room


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: mixing room bowl chopper; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: mixing room bowl chopper

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken. Location: mixing room bowl chopper


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: mixing room table far corner (underside); ENVO_01000584:table; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: mixing room table far corner (underside)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: flaker infeed; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: flaker infeed

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: recipe soaks; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: recipe soaks


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: tote bin inside; ENVO_03501292:tote bin; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: tote bin inside


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: tote bin wheel; ENVO_03501292:tote bin; ENVO_03501261:wheel; ENVO_06105101:plastic

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: tote bin wheel

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: mince machine part-plate, hardened steel; ENVO_03501354:steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken. Location: mince machine part-plate


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: burger-former product entrance; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: burger-former product entrance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: vacuum filler inside; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: filler inside - immediately at product exit

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: burger-former belt; ENVO_06105101:plastic

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: burger-former belt


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: burger-former underside of equipment; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: burger-former underside of equipment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: cutter belt; ENVO_06105101:plastic

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: cutter belt

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: ENVO_01000584:table; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: stainless-steel table


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: cutting plate, hardened steel; ENVO_03501354:steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken. Location: cutting plate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory D ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: collator tray belt; ENVO_06105101:plastic

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken. Location: collator blue tray belt

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: collator product belt; ENVO_06105101:plastic

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken. Location: collator blue product belt


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: filler inside; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: filler inside


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: reject bin; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: reject bin

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: cutter belt; ENVO_06105101:plastic

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: pork. Location: cutter belt


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: collator belt; ENVO_06105101:plastic

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: collator belt


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: stainless-steel table surface

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: food contact tray; ENVO_03501262:tray; ENVO_06105101:plastic

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: food contact tray


text: Fera Science Limited

text: public

text: factory D ; meat(s): pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: knife, stainless steel + plastic handle; ENVO_03501216:stainless steel; ENVO_06105101:plastic

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: pork. Location: knife


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: utensil wash; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: utensil wash

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: metal detector frame (bottom of machine); ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken. Location: metal detector frame (bottom of machine)


text: Fera Science Limited

text: public

text: factory D ; meat(s): pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: drain next to production line; ENVO_01000924:drain; ENVO_01000458:concrete; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: pork. Location: drain next to production line


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: top conveyor; ENVO_03501356:conveyor equipment; ENVO_06105101:plastic

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: top blue conveyor

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork ; control: sample not rinsed; see AMR_MFB_082

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: ENVO_01000584:table; ENVO_03501216:stainless steel

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: stainless-steel table


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork ; control: sample rinsed; see AMR_MFB_081

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: floor next to door into goods in chiller (production side) - high traffic area; ENVO_01000489:concrete building floor; ENVO_01000458:concrete

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: floor next to door into goods in chiller (production side) - high traffic area

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: stainless-steel table (underside); ENVO_01000584:table; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: stainless-steel table (underside)


text: Fera Science Limited

text: public

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: join of intake of chiller, concrete, silicone in joint; ENVO_01000458:concrete; CHEBI_60027:polymer

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: join of intake of chiller


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: wide blue belt roller (under); ENVO_03501368:conveyor roller; ENVO_06105101:plastic

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: wide blue belt roller (under)

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: mixing room bowl chopper 2 underside of equipment; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: mixing room bowl chopper, underside of equipment


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: production drain-main long drain; ENVO_01000924:drain; ENVO_01000458:concrete; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: production drain-main long drain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: mixing room bowl chopper; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: mixing room bowl chopper

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: hose head inside; ENVO_03501216:stainless steel; ENVO_06105101:plastic

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Pipe; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: hose head inside


text: Fera Science Limited

text: public

text: factory D ; meat(s): pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: coex pipe; ENVO_03501216:stainless steel; ENVO_06105101:plastic

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Pipe; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: pork. Location: coex pipe


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted access

text: restricted access

text: hose head inside, plastic-rubber; ENVO_06105101:plastic; ENVO_03501324:latex

text: factory metagenome

characteristic: organism

text: Pipe; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory D ; meat(s): chicken_and_pork

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: sausage machine entrance; ENVO_03501216:stainless steel

text: factory metagenome

text: Pipe; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: sausage machine entrance


text: Fera Science Limited

text: public

text: factory D ; meat(s): chicken_and_pork

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: de-gristler; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Pipe; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken_and_pork. Location: de-gristler


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory D ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: alginate pipe (coex); ENVO_06105101:plastic

text: factory metagenome

characteristic: organism

text: Pipe; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant D. Meat processed at sampling location: chicken. Location: alginate pipe (coex)

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): chicken ; Duplicate of AMR_MFB_114

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: ENVO_01000584:table; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: stainless steel table


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: marinade tumbler inside drum; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: marinade tumbler inside drum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: scales weighing pan; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: scales weighing pan

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): none ; solution in contact: brine

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: injection tank on injector; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: injection tank on injector


text: Fera Science Limited

text: public

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory A ; meat(s): chicken ; Duplicate of AMR_MFB_106

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: injector belt, HDPE; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: injector belt


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): chicken ; Duplicate of AMR_MFB_105

text: United Kingdom

text: restricted access

text: restricted access

text: injector belt , HDPE; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: injector rotator; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: injector rotator


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: injector up + over conveyor belt; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: injector up + over conveyor belt


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: belt from whole bird processing; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: belt from whole bird processing

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: hooks-hangers-lines; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: hooks-hangers-lines


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: breast cap cutter (BCC) - blade; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: breast cap cutter (BCC) - blade


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: breast cap cutter (BCC) - chute; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: breast cap cutter (BCC) - chute

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: slicing machine - outfeed; material unspecified

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: slicing machine - outfeed


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken ; Duplicate of AMR_MFB_101

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: ENVO_01000584:table; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: stainless steel table


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: bulk sealer - underside of sealer; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: bulk sealer - underside of sealer

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: retail packing conveyor; ENVO_03501356:conveyor equipment; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: retail packing conveyor


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: bulk station belt; ENVO_03501283:conveyor belt; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: bulk station belt


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: multi-head weigher chute; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: multi-head weigher chute

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: manual butchery table, nylon; ENVO_01000584:table; CHEBI_60160:polyester polymer

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: manual butchery table


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: dicing machine - infeed; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: dicing machine - infeed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): none

text: United Kingdom

text: restricted access

text: restricted access

text: production floor, resin - under conveyor; ENVO_01000486:building floor; ENVO_03510018:resin

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: production floor - under conveyor

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): none

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: production floor, resin; ENVO_01000486:building floor; ENVO_03510018:resin

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: production floor


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: slicing machine - infeed; material unspecified

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: slicing machine - infeed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: robobatcher gripper; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: robobatcher gripper

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: robobatcher packaging belt (breast processing); material unspecified; ENVO_03501283:conveyor belt

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: robobatcher packaging belt (breast processing)


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken ; Duplicate of AMR_MFB_130

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: robobatcher main belt (breast processing); ENVO_03501283:conveyor belt; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

characteristic: local environmental context

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

characteristic: project name

text: Spongesicle; GENEPIO_0100027:swab

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: source material identifiers

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: robobatcher main belt (breast processing)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted access

text: restricted access

text: AMFI-belt: belt surface (breast processing); ENVO_03501283:conveyor belt; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

text: factory metagenome

characteristic: organism

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: AMFI-belt: belt surface (breast processing)

characteristic: title


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: environmental medium

text: factory A ; meat(s): chicken ; Duplicate of AMR_MFB_128

characteristic: experimental factor

text: United Kingdom

text: restricted access

text: restricted access

text: factory metagenome

text: Spongesicle; GENEPIO_0100027:swab

text: factory metagenome

text: Illumina NovaSeq 6000


text: Fera Science Limited

text: public

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: chainmail gloves; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

characteristic: project name

text: Spongesicle

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

characteristic: sequencing method

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: chainmail gloves


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: factory A ; meat(s): none

text: United Kingdom

text: restricted

text: restricted

text: steriliser location (breast processing), resin floor; ENVO_01000486:building floor; ENVO_03510018:resin

text: factory metagenome

characteristic: organism

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: steriliser location (breast processing), floor


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted

text: restricted

text: AMFI cutting board (breast processing); CHEBI_60160:polyester polymer

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: AMFI cutting board (breast processing)

characteristic: title


text: Fera Science Limited

text: public

characteristic: environmental medium

text: factory A ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: hooks-hangers; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

characteristic: local environmental context

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: hooks-hangers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

text: public

text: factory A ; meat(s): none

text: United Kingdom

text: restricted

text: restricted

text: tray wash curtains; material unspecified

text: factory metagenome

characteristic: project name

text: Spongesicle

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: tray wash curtains


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: factory A ; meat(s): none

text: United Kingdom

text: restricted

text: restricted

text: clean storage area - pallets-wheels (tray wash); material unspecified

text: factory metagenome

characteristic: organism

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: clean storage area - pallets-wheels (tray wash)


text: Fera Science Limited

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: broad-scale environmental context

characteristic: environmental medium

text: factory A ; meat(s): chicken

characteristic: experimental factor

text: United Kingdom

text: restricted

text: restricted

text: multi-head weigher bucket; ENVO_03501216:stainless steel

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: multi-head weigher bucket

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Fera Science Limited

text: public

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory A ; meat(s): chicken

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: multi-head weigher infeed conveyor; ENVO_03501356:conveyor equipment; ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

characteristic: local environmental context

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: multi-head weigher infeed conveyor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

text: public

text: factory A ; meat(s): none

text: United Kingdom

text: restricted

text: restricted

text: tray wash nozzles (tray wash); ENVO_03501216:stainless steel

text: factory metagenome

characteristic: project name

text: Pipe

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: tray wash nozzles (tray wash)


text: Fera Science Limited

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: factory A ; meat(s): chicken

text: United Kingdom

text: restricted

text: restricted

text: AMFI cone interior (breast processing); ENVO_06105101:plastic; CHEBI_60034:polyethylene polymer

text: factory metagenome

characteristic: organism

text: Pipe

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: chicken. Location: AMFI cone interior (breast processing)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Fera Science Limited

text: public

characteristic: broad-scale environmental context

characteristic: environmental medium

text: factory A ; meat(s): none

characteristic: experimental factor

text: United Kingdom

text: restricted

text: restricted

text: tray wash chain belt; ENVO_03501216:stainless steel

text: factory metagenome

text: Pipe

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: tray wash chain belt

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

text: public

text: not provided

text: factory A ; meat(s): NA

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: location unspecified; material unspecified

characteristic: local environmental context

text: factory metagenome

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: NA. Location: unspecified


text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: factory A ; meat(s): none ; solution in contact: dextrose_water

text: United Kingdom

text: restricted

text: restricted

text: spray bottles inside; ENVO_03501326:bottle; ENVO_06105101:plastic; CHEBI_61452:poly(ethylene terephthalate) polymer

text: factory metagenome

characteristic: project name

text: Pipe

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: spray bottles inside


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Fera Science Limited

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: restricted

text: restricted

text: spray bottles nozzle; ENVO_03501326:bottle; ENVO_06105101:plastic; CHEBI_61452:poly(ethylene terephthalate) polymer

text: factory metagenome

characteristic: organism

text: Pipe

text: factory metagenome

text: Illumina NovaSeq 6000; ONT PromethION

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: spray bottles nozzle


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

text: public

characteristic: broad-scale environmental context

characteristic: environmental medium

text: factory A ; meat(s): none ; solution in contact: brine

characteristic: experimental factor

text: United Kingdom

text: restricted

text: restricted

text: brine injector outlet of pipe in tank; ENVO_03501216:stainless steel

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Pipe

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant A. Meat processed at sampling location: none. Location: brine injector outlet of pipe in tank

characteristic: title


text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory C ; meat(s): pork

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: blender blade; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: pork. Location: blender blade


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Fera Science Limited

characteristic: INSDC last update

text: public

text: factory C ; meat(s): chicken

text: United Kingdom

text: restricted

text: restricted

text: orb mixer - multi-species room - inside; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: project name

text: Spongesicle

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: chicken. Location: orb mixer - multi-species room - inside


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: factory C ; meat(s): none

text: United Kingdom

text: restricted

text: restricted

text: cleaning hose, end of production line; ENVO_06105101:plastic

text: factory metagenome

characteristic: organism

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: none. Location: cleaning hose, end of production line


text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: broad-scale environmental context

characteristic: environmental medium

text: factory C ; meat(s): none

characteristic: experimental factor

text: United Kingdom

text: restricted

text: restricted

text: cleaning hose, end of production line; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Fera Science Limited

text: public

text: factory C ; meat(s): none

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: bowl chopper location, floor, resin; ENVO_01000486:building floor; ENVO_03510018:resin

characteristic: local environmental context

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: none. Location: bowl chopper location, floor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

characteristic: INSDC last update

text: public

text: factory C ; meat(s): pork

text: United Kingdom

text: restricted

text: restricted

text: small mincer - infeed; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: project name

text: Spongesicle

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: pork. Location: small mincer - infeed


text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: factory C ; meat(s): pork

text: United Kingdom

text: restricted

text: restricted

text: small mincer - exit; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: pork. Location: small mincer - exit


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Fera Science Limited

text: public

characteristic: broad-scale environmental context

characteristic: environmental medium

text: factory C ; meat(s): pork

characteristic: experimental factor

text: United Kingdom

text: restricted

text: restricted

text: small mincer - floor; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: pork. Location: small mincer - floor

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

text: public

text: factory C ; meat(s): pork

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: large mincer - exit; ENVO_03501216:stainless steel

characteristic: local environmental context

text: factory metagenome

text: Antimicrobial Resistance in Biofilms Formed During Secondary Food Processing of Meat and Meat Products

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: pork. Location: large mincer - exit


text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Secondary meat processing factory. ENVO_03501297:meat processing plant

text: factory C ; meat(s): pork

text: United Kingdom

text: restricted

text: restricted

text: blender - infeed; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: project name

text: Spongesicle

characteristic: sample collection device

text: factory metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: pork. Location: blender - infeed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Fera Science Limited

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: factory C ; meat(s): chicken_and_pork

text: United Kingdom

text: restricted

text: restricted

text: tote bin - bottom; ENVO_03501292:tote bin; ENVO_03501216:stainless steel

text: factory metagenome

characteristic: organism

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: chicken_and_pork. Location: tote bin - bottom


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fera Science Limited

text: public

characteristic: broad-scale environmental context

characteristic: environmental medium

text: factory C ; meat(s): pork

characteristic: experimental factor

text: United Kingdom

text: restricted

text: restricted

text: large mincer - infeed; ENVO_03501216:stainless steel

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: pork. Location: large mincer - infeed

characteristic: title


text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: factory C ; meat(s): none

text: United Kingdom

characteristic: geographic location

text: restricted

characteristic: geographic location (latitude)

text: restricted

characteristic: geographic location (longitude)

text: large mincer location - floor, resin; ENVO_01000486:building floor; ENVO_03510018:resin

characteristic: local environmental context

text: factory metagenome

text: Spongesicle

text: factory metagenome

text: Illumina NovaSeq 6000

text: Biofilm sample from secondary meat processing plant C. Meat processed at sampling location: none. Location: large mincer location - floor