characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

text: Prior chicken data from Caecum content; animal CC21.16 from cage CC21 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

text: Campylobacter:+;Salmonella:-;Clostridium:-

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project

text: HoloFood Chicken - Prior Chicken

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: UCPH


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CC22.06 from cage CC22 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Campylobacter:NS;Salmonella:NS;Clostridium:NS

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

unit: °C

unit: g

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

text: HoloFood Chicken - Prior Chicken

characteristic: project name

text: Shield

text: E-matrix 2ml

text: UCPH

unit: mL

text: chicken gut metagenome

characteristic: sequencing method

unit: day

type: EXTERNAL LINKS

type: BIOGENIC AMINES

type: SAMPLE

value: Body site

value: caecum content

value: Raw sequence name

value: ng used for library build

value: Sequencing company

value: BGI

value: Project

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value: Organism

value: Chicken

value: Index PCR cycles

value: Lab Process ID

value: Experiment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CC23.02 from cage CC23 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Prebiotic

text: Campylobacter:-;Salmonella:-;Clostridium:-

text: Gallus gallus

text: male

characteristic: host storage container temperature

characteristic: host subject id

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characteristic: title

characteristic: trial length

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value: metagenomics

value: Sample code


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: Prior chicken data from Caecum content; animal CC24.03 from cage CC24 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: geographic location (region and locality)

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characteristic: host body site

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characteristic: SRA accession

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text: Prior chicken data from Caecum content; animal CC24.14 from cage CC24 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

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text: D-rex protocol

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text: E-matrix 2ml

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characteristic: sample volume or weight for DNA extraction

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characteristic: trial length

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GENOME INSTITRUTE OF SINGAPORE

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characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:GENOME INSTITRUTE OF SINGAPORE

characteristic: Submitter Id

text: metagenome

text: metagenome

text: NUH Stool Samples


text: UNIVERSITY OF COPENHAGEN

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characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CA15.17 from cage CA15 with treatment CE

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text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

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text: Chicken

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characteristic: host diet treatment

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text: female

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characteristic: host storage container temperature

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: Prior chicken data from Caecum content; animal CC05.03 from cage CC05 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

text: Gallus gallus

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text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

text: HoloFood Chicken - Prior Chicken

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text: E-matrix 2ml

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characteristic: sample storage location

characteristic: sample storage temperature

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characteristic: trial length

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CB06.16 from cage CB06 with treatment CC

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text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

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text: D-rex protocol

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text: Prior chicken data from Caecum content; animal CA10.16 from cage CA10 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

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text: HoloFood

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characteristic: sample storage location

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characteristic: ENA-CHECKLIST

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: Prior chicken data from Caecum content; animal CA16.02 from cage CA16 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

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text: D-rex protocol

characteristic: nucleic acid extraction

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characteristic: organism

text: HoloFood

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text: HoloFood Chicken - Prior Chicken

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text: Shield

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text: E-matrix 2ml

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characteristic: sequencing method


characteristic: ENA-CHECKLIST

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Prior chicken data from Caecum content; animal CB22.15 from cage CB22 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

text: Gallus gallus

text: female

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

text: HoloFood Chicken - Prior Chicken

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text: E-matrix 2ml

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

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text: chicken gut metagenome

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: ng used for library build


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: Prior chicken data from Caecum content; animal CC07.07 from cage CC07 with treatment CE

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text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

characteristic: host diet treatment

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text: Gallus gallus

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text: male

characteristic: host sex

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text: D-rex protocol

characteristic: nucleic acid extraction

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text: HoloFood Chicken - Prior Chicken

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text: Shield

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text: E-matrix 2ml

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characteristic: sequencing method

value: Sequencing company


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: Submitter Id

characteristic: collection date

text: Biobaz

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

text: Marine hydrothermal vent biome [ENVO:01000030]

characteristic: environment (biome)

text: Bathymodiolus-dominated oceanic mussel reef [ENVO:01001385], Bathymodiolus-dominated oceanic mussel bed [ENVO:01001390], marine hydrothermal vent [ENVO:01000122]

characteristic: environment (feature)

text: Bathymodiolus gill tissue material [ENVO:01001393]

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

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text: Illumina HiSeq3000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

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text: public

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text: M64-2 Logatchev 2005

text: Bathymodiolus mussel sample

text: Atlantic Ocean

text: Bathymodiolus

characteristic: host taxid

text: host-associated

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text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

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text: symbiont metagenome

text: Illumina HiSeq3000

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text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: L'Atalante MSM 06-3 2008

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text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

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characteristic: environment (material)

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host subject id

text: host-associated

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scoop net

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

text: Bathymodiolus

characteristic: host common name

text: 267 ROV 4-5

characteristic: host taxid

text: host-associated

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text: metagenome

characteristic: investigation type

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: Scoop net

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text: Illumina HiSeq3000

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characteristic: SRA accession

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text: Bathymodiolus mussel sample

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characteristic: environment (biome)

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

text: 267 ROV 4-6

text: host-associated

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text: Bathymodiolus PopGen MAR

characteristic: project name

text: Scoop net

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text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

text: Bathymodiolus

characteristic: host common name

text: 267 ROV 4-7

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scoop net

characteristic: sample collection device or method

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text: Illumina HiSeq3000


text: public

characteristic: SRA accession

characteristic: Submitter Id

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text: Bathymodiolus mussel sample

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characteristic: environment (biome)

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text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

text: 274 ROV 4-2

text: host-associated

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: Rock sample

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text: Illumina HiSeq3000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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text: Bathymodiolus mussel sample

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text: Bathymodiolus

characteristic: host common name

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text: metagenome

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characteristic: project name

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text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: M78-2 (2009)

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

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text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

text: 319 ROV 5-6

text: host-associated

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scoop net

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

text: Bathymodiolus

characteristic: host common name

text: 335 ROV 5-4

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Biobaz

characteristic: cruise

text: Bathymodiolus mussel sample

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characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

text: host-associated

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

characteristic: project name

text: ROV Claw

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

text: Bathymodiolus

characteristic: host common name

text: 287 ROV 12-1

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scratch shovel

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


text: public

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characteristic: host common name

text: 267 ROV 4-8

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: Scoop net

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: M78-2 (2009)

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

text: 267 ROV 4-2

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

characteristic: project name

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: 267 ROV 4-3

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: sequencing method


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: M78-2 (2009)

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

text: 267 ROV 4-4

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: Scoop net

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: 267 ROV 4-9

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

characteristic: project name

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: M78-2 (2009)

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

text: 267 ROV 4-10

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: 267 ROV 4-11

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: Scoop net

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

characteristic: project name

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: 319 ROV 5-2

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: sequencing method


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: M78-2 (2009)

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

text: 319 ROV 5-3

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: Scoop net

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: 324 ROV 10-1

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

characteristic: project name

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: M78-2 (2009)

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

text: 324 ROV 10-4

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Biobaz

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: ROV Claw

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: L'Atalante MSM 06-3 2008

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

characteristic: project name

text: Scoop net

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M78-2 (2009)

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: 287 ROV 12-4

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

text: Scratch shovel

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: sequencing method


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Biobaz

characteristic: cruise

text: Bathymodiolus mussel sample

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Bathymodiolus

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: symbiont metagenome

characteristic: organism

text: Bathymodiolus PopGen MAR

text: symbiont metagenome

text: Illumina HiSeq3000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bathymodiolus mussel sample

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bathymodiolus

characteristic: host common name

text: host-associated

text: metagenome

text: symbiont metagenome

text: Bathymodiolus PopGen MAR

characteristic: project name

text: ROV Claw

characteristic: sample collection device or method

text: symbiont metagenome

text: Illumina HiSeq3000

characteristic: title


text: Cantacuzino NIMMRD

text: public

characteristic: SRA accession

tag: Namespace:Cantacuzino NIMMRD

characteristic: Submitter Id

characteristic: collection date

text: Romania

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GENOME INSTITRUTE OF SINGAPORE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: metagenome

characteristic: organism

text: metagenome

text: TTSH Stool Samples


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: title


text: Trichuris muris

text: SC

text: public

characteristic: Submitter Id

text: Trichuris muris

text: Trichuris muris

text: Trichuris muris


text: Egg

text: Trichuris muris

text: SC

text: public

text: Trichuris muris

text: Trichuris muris

text: Trichuris muris


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Brain sample dissected from adult medaka fish

characteristic: description

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_117-2_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_131-1_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_134-1_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_134-2_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_4-1_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_4-2_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_7-1_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_7-2_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_11-1_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_69-1_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_79-2_brain_dna_ont


text: EMBL-EBI

text: public

text: ena-upload-cli

text: Japanese medaka

text: Oryzias latipes

text: Oryzias latipes

text: Brain sample from medaka line MIKK_80-1_brain_dna_ont


text: female

characteristic: ArrayExpress-SEX

text: Sabethes cyaneus

text: Female

characteristic: GENDER

text: SC

text: public

text: Sabethes cyaneus

text: Sabethes cyaneus

text: Sabethes cyaneus


text: male

text: Sabethes cyaneus

characteristic: ENA-CHECKLIST

text: Male

text: SC

text: public

text: Sabethes cyaneus

text: Sabethes cyaneus

text: Sabethes cyaneus


text: Human

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: human

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Anopheles gambiae

characteristic: External Id

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: oesophagus

characteristic: ArrayExpress-PHENOTYPE

text: male

text: Mus musculus

text: Male

text: SC

characteristic: INSDC center name

text: public

text: oesophagus

characteristic: PHENOTYPE

text: house mouse

text: Mus musculus

text: Mus musculus


text: oesophagus

text: female

text: Mus musculus

text: Female

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: oesophagus

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


E-MTAB-10121:Sample 1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10121:Sample 1

tag: Namespace:Thyroid and Parathyroid Surgery Center, West China Hospital of Sichuan University,

text: ArrayExpress

characteristic: broker name

text: BCPAP

text: human

text: Protocols: Two human PTC cell lines, K1 and BCPAP, were purchased from Guangzhou Cellcook Biotech Co., Ltd. K1 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM; Invitrogen Life Technologies), and BCPAP cells were cultured in RPMI-1640 (Invitrogen Life Technologies). All media were supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin (Invitrogen Life Technologies), and the cells were grown at 5% CO2 and 37°C. Patients with the following criteria were included in the study: (1) pathologically confirmed PTC in the primary tumor, (2) prior total/near total thyroidectomy, (3) any metastatic site, such as lymph node, lung, and bone, (4) history of 131I therapy, and (5) no history of other tumors. The enrolled patients were divided into two groups according to posttherapeutic 131I whole-body scans: a non-131I-avid group and a 131I-avid metastases group. Ten milliliters of venous blood from each participant was centrifuged at 1,800 ×g for 10 min at 4°C within 2 h of collection, followed by a second centrifugation at 3,000 ×g for 15 min at 4°C to eliminate any residual cell debris. The supernatant serum was then stored at -80°C until use. Total RNA was extracted from exosomes using TRIzol reagent (Invitrogen Life Technologies, CA, USA) according to the manufacturer’s instructions. RNA degradation and contamination were monitored on 1% agarose gels. RNA concentration was measured using a Qubit RNA Assay Kit in a Qubit 2.0 Fluorometer (Life Technologies, CA, USA). RNA purity was tested using a NanoPhotometer spectrophotometer (IMPLEN, CA, USA). A total amount of 3 μg total RNA per sample was used as input material for the small RNA library. Sequencing libraries were generated using NEBNext Multiplex Small RNA Library Prep Set for Illumina (NEB, USA) following the manufacturer’s recommendations, and index codes were added to assign sequences to each sample. PCR amplification was performed using LongAmp Taq 2X Master Mix. PCR products were purified on an 8% polyacrylamide gel (100 V, 80 min). DNA fragments of 140~160 bp (the length of small noncoding RNA plus the 3' and 5' adaptors) were recovered and dissolved in 8 μL elution buffer. Finally, library quality was assessed on the Agilent Bioanalyzer 2100 system using DNA High Sensitivity Chips. The clustering of the index-coded samples was performed on a cBot Cluster Generation System using TruSeq SR Cluster Kit v3-cBot-HS (Illumina) according to the manufacturer’s instructions. After cluster generation, the library preparations were sequenced on an Illumina HiSeq 2500/2000 platform, and 50 bp single-end reads were generated.

text: thyroid carcinoma

characteristic: disease

text: Iodine-131 radiation

characteristic: irradiate

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-10121:Sample 2

text: Thyroid and Parathyroid Surgery Center, West China Hospital of Sichuan University,

text: public

text: E-MTAB-10121:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: BCPAP

text: human

characteristic: common name

characteristic: description

text: thyroid carcinoma

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-10121:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10121:Sample 3

text: ArrayExpress

text: human

text: thyroid carcinoma

text: Iodine-131 radiation

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

text: Homo sapiens

text: Sample 3


E-MTAB-10121:Sample 4

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10121:Sample 4

text: ArrayExpress

text: human

text: thyroid carcinoma

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

text: Homo sapiens

text: Sample 4


text: female

characteristic: ArrayExpress-SEX

text: Human

characteristic: ArrayExpress-SPECIES

text: Female

characteristic: GENDER

text: SC

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: GENOME INSTITRUTE OF SINGAPORE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metagenome

text: metagenome

text: TTSH Stool Samples


text: GENOME INSTITRUTE OF SINGAPORE

text: public

characteristic: Submitter Id

text: metagenome

text: metagenome

text: TTSH Skin Samples


text: Cryptosporidium parvum

text: Cryptosporidium parvum

text: SC

text: public

text: Cryptosporidium parvum

characteristic: common name

text: Cryptosporidium parvum

text: Cryptosporidium parvum


text: INSA Lyon

text: public

tag: Namespace:INSA Lyon

text: ArrayExpress

characteristic: broker name

text: Protocols: Cells were collected in exponential phase (OD=0.2 at 600nm) or transition to stationary phase (OD=1.1 at 600nm). Growth in minimal medium M63 supplemented with sucrose (0.2% wt/vol) Treated samples were collected 15 min after treatment with seconeolitsine diluted in DMSO (50 uM final concentration). Total RNA from each D. dadantii sample was isolated using the frozen acid phenol method (Maes et Messens 1992), and submitted to the Montpellier MGX Platform for ribosomal depletion (Illumina RiboZero kit) and RNA fragmentation. Strand-specific cDNA libraries were constructed by Montpellier GenomicX MGX Platform.

characteristic: description

text: exponential phase

characteristic: developmental stage

unit: micromolar

characteristic: dose

text: M63 with 0.2 percent glucose

characteristic: growth condition

text: Dickeya dadantii

text: Dickeya dadantii

text: Dickeya dadantii

characteristic: strain

unit: minute

characteristic: time


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSA Lyon

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: seconeolitsine

characteristic: compound

text: exponential phase

text: M63 with 0.2 percent glucose

text: Dickeya dadantii

text: Dickeya dadantii

text: Dickeya dadantii

characteristic: title


text: INSA Lyon

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: early stationary phase

text: M63 with 0.2 percent glucose

text: Dickeya dadantii

characteristic: organism

text: Dickeya dadantii

text: Dickeya dadantii


text: INSA Lyon

text: public

text: ArrayExpress

characteristic: broker name

text: seconeolitsine

characteristic: description

text: early stationary phase

characteristic: developmental stage

characteristic: dose

text: M63 with 0.2 percent glucose

text: Dickeya dadantii

text: Dickeya dadantii

text: Dickeya dadantii


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Department of Microbiology, Tumor, and Cell Biology, Karolinska Institute, Science for Life Laboratory, Sweden

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

characteristic: common name

text: Protocols: mESC were obtained from American Type Culture Collection (ATCC, Rockville, MD). The cell line was mycoplasma free when periodically tested with Mycoplasmacheck (Eurofins Genomics). mESC were cultured in T75 flasks at 37 °C and 5 % CO2 atmosphere using Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 1/100 Penicillin/Streptomycin (P/S, Sigma) and 10 % fetal bovine serum (Hyclone, GE healthcare). Huh7 cells were maintained by splitting 1/6 three times a week, done by aspirating the medium, gently washing the cells with phosphate buffered saline (PBS, without Mg2+, Sigma) and detaching them with 2 mL of a trypsin-EDTA solution (0.05%, Sigma) for 3-5 min. Trypsin-EDTA was inactivated with a minimum of 10-fold surplus of culture medium before a cell fraction was passaged. Extracted total RNA was fragmeted at 95 degrees celsius in Tris-HCl 80 mM and MgCl2 8 mM final concentrations for 4 minutes and 30 seconds. After fragmentation, the RNA was cleaned using 1 volume of RNA CleanXP Ampure beads and 1 volume of isopropanol; after 2 80% Ethanol washes the RNA was eluted in half the volume of AMPure beads used. Upon cell harvest, 700 µL Qiazol (QIAGEN) was directly added onto the cells on ice and mixed. The cell extract was either stored at -80 °C or RNA extraction was continued immediately by adding 140 µL chloroform. This Qiazol/chloroform mixture was shaken for 30 sec and incubated at RT for 3 min, before centrifugation at 9.000 g for 5 min at 4 °C. The upper aqueous phase was transferred to a new tube and an equal volume of isopropanol was added. The tube was inverted 5 times followed by 10 min incubation at RT. The mixture was centrifuged at 9.000 g and 4 °C for 10 min and the supernatant discarded. The pellet was washed in 700 µL cold 70% ethanol and centrifuged at 15.000 g for 5 min at 4 °C. The supernatant was discarded entirely, and the pellet air-dried for 5 minutes, before resuspension in nuclease-free water. RNA concentration was determined by nanodrop (Nanodrop 2000c). RNA was DNase-treated using the Turbo DNase Kit (Thermo Fisher) for 30 min at 37 °C and the reaction was stopped by adding the inactivation reagent from the kit and incubation for 5 min at 37 °C (Thermo Fisher). In order to achieve higher purity, the RNA was EtOH-precipitated overnight using 1/10 of 3M sodium acetate (pH 5.2) and 1 µL GlycoBlue (Ambion), followed by washing twice with 700 µL 70 % ethanol. The pellet was air-dried, resuspended in 25 µL nuclease-free water and the RNA concentration determined by nanodrop. The library preparation was carried out using the NEXTFLEX small RNA library preparation kit v3, PerkinElmer catalog # NOVA-5132-06. The quality of every cDNA library was determined on an Agilent Bioanalyzer instrument according to the manufacturer’s protocol.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Input


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Microbiology, Tumor, and Cell Biology, Karolinska Institute, Science for Life Laboratory, Sweden

text: public

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


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text: male

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text: L4 wild-type fed E. coli OP50

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text: L4 wild-type fed E. coli OP50

characteristic: PHENOTYPE

text: Caenorhabditis elegans

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text: L4 wild-type fed E. coli HB101

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text: L4 wild-type fed E. coli HB101

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text: Caenorhabditis elegans


text: L4 wild-type fed Acinetobacter schindleri

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text: Hermaphrodite

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text: L4 wild-type fed Pseudomonas fragi

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text: L4 wild-type starved on M9

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lodo

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lodo

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text: UNIVERSITY OF COPENHAGEN

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text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

text: Salmon meta transcriptomic data from Distal gut content; animal SA01.01 from tank SA01 with treatment Tiger

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Fermented algae meal (added in in oil coating)

characteristic: host diet

text: Tiger: SA Control

characteristic: host diet treatment

unit: % mass

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

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unit: cm

characteristic: host length

text: Salmo salar

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text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

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text: Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit

characteristic: library name

text: rRNA depletion + strand specific library

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: fish gut metagenome

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text: HoloFood Salmon - MetaTranscriptomics

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text: Shield

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text: 2ml E-matrix

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text: Illumina NovaSeq 6000

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value: Raw seq. name

value: distal gut content

value: Omics


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text: UNIVERSITY OF COPENHAGEN

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text: Salmon meta transcriptomic data from Distal gut content; animal SA01.02 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

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characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: fish gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Salmon - MetaTranscriptomics

text: Shield

text: 2ml E-matrix

text: UCPH

text: fish gut metagenome

text: Illumina NovaSeq 6000

characteristic: title

value: BGI

value: metatranscriptomics

value: Fermented algae meal (added in in oil coating)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Salmon meta transcriptomic data from Distal gut content; animal SA01.03 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Tiger: SA Control

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

characteristic: library name

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: fish gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Salmon - MetaTranscriptomics

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: fish gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: trial timepoint

value: Index PCR cycles

value: Organism

value: Salmon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Salmon meta transcriptomic data from Distal gut content; animal SA01.04 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger: SA Control

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: D-rex protocol

text: fish gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Salmon - MetaTranscriptomics

text: Shield

text: 2ml E-matrix

text: UCPH

text: fish gut metagenome

text: Illumina NovaSeq 6000

characteristic: title

value: Metagenomics