E-MTAB-12612:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 24

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 24


E-MTAB-12612:Sample 25

status: PUBLIC

tag: attribute

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 25

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Protocols: This validation study was performed on 41 cADNs, 18 SSLs, and their adjacent normal mucosa samples (total number of samples analyzed = 118). Colorectal tissues were prospectively collected during colonoscopies. Endoscopic biopsies from the tumor and the corresponding normal mucosa (located >2 cm from the tumor) were immersed in AllProtect Tissue Reagent (Qiagen, Hilden, Germany), held at 4°C overnight, and stored at -80°C. onors provided written consent to tissue collection, testing and data publications. Samples were numerically coded to protect donors' rights to confidentiality and privacy. The study was approved by the Zurich canton ethics committee. DNA extraction was performed with Qiagen AllPrep DNA/RNA mini kit (Hilden, Germany). DNA concentrations were quantified using Qubit fluorometer (Invitrogen, Carlsbad, USA) and quality was assessed with NanoDrop (ThermoFisher Scientific, Wilmington, USA). Genomic DNA (100ng) was bisulfite converted with EZ-DNA Methylation-Gold kit (Zymo, Irvine, USA) prior to library preparation which was performed with Accel-NGS Methyl-Seq DNA library kit (Swift Biosciences, Ann Arbor, USA). Eight indexed libraries were pooled in equimolar amounts for hybridization with baits. Hybridization of customized RNA baits with the pool of 8 libraries was performed twice at 63°C for 16 to 24 hours. AMPure Xp beads (Beckman Coulter Inc, Brea, USA) were used to isolate biotinylated DNA, and amplification of bead-bound enriched libraries was performed using the KAPA HiFi HotStart Ready Mix (KAPA Biosystems, Wilmington, MA, USA) and adaptor specific primers. The concentration of the enriched libraries was determined with a Qubit fluorometer, and library size with a Tapestation (Agilent, Santa Clara, CA, USA) for subsequent library titration and next generation sequencing.

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: 0-IS (RECIDIVA)

text: IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 25

characteristic: title


E-MTAB-12612:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 26

text: ArrayExpress

text: A

text: human

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

text: normal tissue adjacent to pre-lesion (>2cm)

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 26


E-MTAB-12612:Sample 27

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 27

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-G MIXED 0-IS/O-IIA

text: IIIL

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 27


E-MTAB-12612:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 28

text: ArrayExpress

text: A

text: human

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 28

characteristic: title


E-MTAB-12612:Sample 29

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 29

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: R

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TVA

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 29


E-MTAB-12612:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 3

text: ArrayExpress

text: A

text: human

characteristic: description

text: adenoma

characteristic: disease

text: LGD

text: TA

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: ISP

text: IV

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 3


E-MTAB-12612:Sample 30

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 30

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: R

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 30

characteristic: title


E-MTAB-12612:Sample 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 31

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G IIA+IIC

characteristic: paris classification

text: IIIL

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 31


E-MTAB-12612:Sample 32

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 32

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: female

text: Sample 32


E-MTAB-12612:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 33

text: ArrayExpress

text: D

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: IIA (LST-NG)

text: IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 33

characteristic: title


E-MTAB-12612:Sample 34

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 34

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: D

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 34


E-MTAB-12612:Sample 35

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 35

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-G

text: IIIL

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 35


E-MTAB-12612:Sample 36

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 36

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 36

characteristic: title


E-MTAB-12612:Sample 37

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 37

text: ArrayExpress

text: T

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG (IIA/IIC)

characteristic: paris classification

text: IIIL/IIIS

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 37


E-MTAB-12612:Sample 38

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 38

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 38


E-MTAB-12612:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 39

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

text: Homo sapiens

text: Homo sapiens

text: colon

text: IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 39

characteristic: title


E-MTAB-12612:Sample 4

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 4


E-MTAB-12612:Sample 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 40

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 40


E-MTAB-12612:Sample 41

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 41

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: S

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 41

characteristic: title


E-MTAB-12612:Sample 42

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 42

text: ArrayExpress

text: S

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 42


E-MTAB-12612:Sample 43

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 43

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: D

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: 0-IS+IIA (LST-G)

text: IV

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 43


E-MTAB-12612:Sample 44

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 44

text: ArrayExpress

text: D

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 44

characteristic: title


E-MTAB-12612:Sample 45

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 45

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST 0-IIB

characteristic: paris classification

text: IIIL

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 45


E-MTAB-12612:Sample 46

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 46

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 46


E-MTAB-12612:Sample 47

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 47

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: S

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG 0-IIA+IS

text: IIIL

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 47

characteristic: title


E-MTAB-12612:Sample 48

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 48

text: ArrayExpress

text: S

text: human

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 48


E-MTAB-12612:Sample 49

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 49

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: R

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: HGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-G 0-IIA+IS

text: IV

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 49


E-MTAB-12612:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 5

text: ArrayExpress

text: T

text: human

characteristic: description

text: adenoma

characteristic: disease

text: HGD

text: TVA

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G

text: IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 5

characteristic: title


E-MTAB-12612:Sample 50

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 50

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: R

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 50


E-MTAB-12612:Sample 51

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 51

text: ArrayExpress

text: T

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: IIIL

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 51


E-MTAB-12612:Sample 52

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 52

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 52

characteristic: title


E-MTAB-12612:Sample 53

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 53

text: ArrayExpress

text: A

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 53


E-MTAB-12612:Sample 54

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 54

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 54


E-MTAB-12612:Sample 55

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 55

text: ArrayExpress

text: T

text: human

characteristic: description

text: adenoma

text: HGD

characteristic: dysplasia

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 55

characteristic: title


E-MTAB-12612:Sample 56

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 56

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 56


E-MTAB-12612:Sample 57

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 57

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-G (0-IIA)

text: IIIL

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 57


E-MTAB-12612:Sample 58

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 58

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 58

characteristic: title


E-MTAB-12612:Sample 59

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 59

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

text: LGD

characteristic: dysplasia

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G NODULAR 0-IIA

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 59


E-MTAB-12612:Sample 6

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-12612:Sample 60

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 60

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 60

characteristic: title


E-MTAB-12612:Sample 61

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 61

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: R

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: HGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G O-IIA

characteristic: paris classification

text: IIIL+IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 61


E-MTAB-12612:Sample 62

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 62

text: ArrayExpress

text: R

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 62


E-MTAB-12612:Sample 63

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 63

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G 0-IIA+IIC

text: III-L+IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 63

characteristic: title


E-MTAB-12612:Sample 64

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 64

text: ArrayExpress

text: A

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 64


E-MTAB-12612:Sample 65

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 65

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: R

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: IV

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 65


E-MTAB-12612:Sample 66

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 66

text: ArrayExpress

text: R

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 66

characteristic: title


E-MTAB-12612:Sample 67

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 67

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: S

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: HGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G

characteristic: paris classification

text: III/IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 67


E-MTAB-12612:Sample 68

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 68

text: ArrayExpress

text: S

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: female

text: Sample 68


E-MTAB-12612:Sample 69

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 69

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: ADC

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G NODULAR 0-IIA+IS

text: VI

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 69

characteristic: title


E-MTAB-12612:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 7

text: ArrayExpress

text: A

text: human

characteristic: description

text: adenoma

characteristic: disease

text: HGD

text: TVA

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: ISP

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 7


E-MTAB-12612:Sample 70

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 70

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: individual

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: female

text: Sample 70


E-MTAB-12612:Sample 71

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 71

text: ArrayExpress

text: A

text: human

text: adenoma

text: HGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG 0-IIA

text: II

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 71

characteristic: title


E-MTAB-12612:Sample 72

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 72

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 72


E-MTAB-12612:Sample 73

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 73

text: ArrayExpress

text: R

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-G 0-IIA (RECIDIVA)

text: IV

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 73


E-MTAB-12612:Sample 74

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 74

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: R

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 74

characteristic: title


E-MTAB-12612:Sample 75

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 75

text: ArrayExpress

text: A

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TVA

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G

characteristic: paris classification

text: IIIL/IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 75


E-MTAB-12612:Sample 76

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 76

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 76


E-MTAB-12612:Sample 77

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 77

text: ArrayExpress

text: C

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: IIa

text: IIIs

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 77

characteristic: title


E-MTAB-12612:Sample 78

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 78

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 78


E-MTAB-12612:Sample 79

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 79

text: ArrayExpress

text: S

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TA

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: Is

text: IV

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 79


E-MTAB-12612:Sample 8

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 8

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 8

characteristic: title


E-MTAB-12612:Sample 80

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 80

text: ArrayExpress

text: S

text: human

text: adenoma

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 80


E-MTAB-12612:Sample 81

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 81

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: S

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: Ip

text: IV

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 81


E-MTAB-12612:Sample 82

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 82

text: ArrayExpress

text: S

text: human

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 82

characteristic: title


E-MTAB-12612:Sample 83

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 83

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: maximum lesion diameter

text: SSL

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G 0-IIA+IS

characteristic: paris classification

text: IIIL+IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 83


E-MTAB-12612:Sample 84

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 84

text: ArrayExpress

text: A

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 84


E-MTAB-12612:Sample 85

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 85

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

text: LGD

characteristic: dysplasia

characteristic: individual

text: SSL

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG 0-IIA

text: II+IIIL

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 85

characteristic: title


E-MTAB-12612:Sample 86

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 86

text: ArrayExpress

text: A

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 86


E-MTAB-12612:Sample 87

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 87

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

characteristic: maximum lesion diameter

text: SSL

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-NG

text: II

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 87


E-MTAB-12612:Sample 88

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 88

text: ArrayExpress

text: A

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 88

characteristic: title


E-MTAB-12612:Sample 89

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 89

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

text: LGD

characteristic: dysplasia

text: SSL

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG 0-IIA

characteristic: paris classification

text: II

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 89


E-MTAB-12612:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 9

text: ArrayExpress

text: A

text: human

characteristic: description

text: adenoma

characteristic: disease

text: LGD

characteristic: individual

characteristic: maximum lesion diameter

text: VA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-G O-IIA+IS

text: IV

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-12612:Sample 90

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 90

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 90

characteristic: title


E-MTAB-12612:Sample 91

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 91

text: ArrayExpress

text: T

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: LGD

characteristic: dysplasia

text: SSL

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G (IIA)

characteristic: paris classification

text: II

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 91


E-MTAB-12612:Sample 92

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 92

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 92


E-MTAB-12612:Sample 93

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 93

text: ArrayExpress

text: T

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: maximum lesion diameter

text: SSL

text: Homo sapiens

text: Homo sapiens

text: colon

text: II

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 93

characteristic: title


E-MTAB-12612:Sample 94

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 94

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 94


E-MTAB-12612:Sample 95

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 95

text: ArrayExpress

text: D

text: human

text: Colon Sessile Serrated Adenoma/Polyp

text: LGD

characteristic: dysplasia

characteristic: individual

text: SSL

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: II-A

text: II

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 95


E-MTAB-12612:Sample 96

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 96

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: D

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 96

characteristic: title


E-MTAB-12612:Sample 97

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 97

text: ArrayExpress

text: D

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: individual

characteristic: maximum lesion diameter

text: SSL

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: paris classification

text: II

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 97


E-MTAB-12612:Sample 98

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 98

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: D

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: female

text: Sample 98


E-MTAB-12612:Sample 99

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 99

text: ArrayExpress

text: D

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: LGD

characteristic: dysplasia

text: SSL

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG (0-IIA)

text: II

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 99

characteristic: title


text: Department of Hematology Erasmus MC

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Hematology  Erasmus MC

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bone marrow cell

text: house mouse

characteristic: common name

text: Protocols: 1 femur and 2 tibias from each mouse were used. After isolating and cleaning the bones, one end was cut off and bones were placed into a 0.5 ml microcentrifuge tube with a hole punched in the bottom. This was nested into a 1.5 ml microcentrifuge tube and spun down at 10,000 RPM for 15 seconds to collect the bone marrow. Following resuspension in PBS containing 1% FCS and 1 mM EDTA, erythrocytes were lysed. Remaining cells were washed with PBS containing 2% FCS, filtered through a 100 um cell strainer and counted. Following erythrocyte lysis, the samples were filtered through a 100 um cell strainer and counted. Fc-receptors were blocked with 10% normal mouse serum and anti-CD16/32 (BD, clone 2.4G2) prior to incubation with the following antibodies: CD3e-PerCpCy5.5 (eBioscience, clone 145-2C11), CD8-FITC (BD, clone 53-6.7), CD11b-APCeFluor780 (eBioscience, clone M1/70), CD19-AF700 (eBioscience, clone eBio1D3), CD27-BV510 (Biolegend, clone LG.3A10), CD44-BV510 (Biolegend, clone IM7), NKp46-PE-Cy7 (eBioscience, clone 29A1.4), Gr1-APC (BD, clone RB6-8C5), Ly6c-BV510 (Biolegend, clone HK1.4). Samples were incubated for 25 minutes on ice in the dark. Following staining, cells were washed and resuspended in PBS + 2% FCS containing DAPI, and sorted with a BD FACS Aria III. Sorted T, NK, B, monocyte/macrophages and neutrophil granulocytes were combined per mouse and processed as one sample. Single cells were encapsulated for cDNA synthesis and barcoded using the Chromium Single Cell 3' Reagent Kit v3 (10X Genomics) Libraries were constructed according to the manufacturer’s recommendations (10X Genomics)

characteristic: description

text: adult

characteristic: developmental stage

text: multiple myeloma

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Hematology Erasmus MC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: bone marrow cell

text: house mouse

text: adult

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: female


text: UNIVERSITY OF COPENHAGEN

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA01.03 from tank SA01 with treatment Tiger

text: Norway

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Fermented algae meal (added in in oil coating)

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

unit: % mass

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

unit: g

characteristic: host gutted mass

unit: cm

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

unit: °C

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

unit: day

characteristic: trial timepoint

type: EXTERNAL LINKS

type: SAMPLE

value: Organism

value: Salmon

value: Index PCR cycles

value: UCPH

value: Body site

value: distal gut content


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA01.25 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: Experiment

value: amplicon

value: Lab Process ID

value: Fermented algae meal (added in in oil coating)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA01.27 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Sample code

value: Sequencing company


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA01.29 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: Omics

value: Metagenomics


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA02.01 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA02.02 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: BGI

value: Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA02.16 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Raw seq. name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA02.20 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: HoloFood

value: Pool


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA02.22 from tank SA02 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA04.05 from tank SA04 with treatment Puma

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Puma SA Seaweed 0.5%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Puma

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA05.03 from tank SA05 with treatment Cougar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Cougar SA Seaweed 1.5%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Cougar

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA05.04 from tank SA05 with treatment Cougar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Cougar SA Seaweed 1.5%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Cougar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA05.05 from tank SA05 with treatment Cougar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Cougar SA Seaweed 1.5%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Cougar

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA06.01 from tank SA06 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:+

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: UCPH


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA06.02 from tank SA06 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Salmon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA06.05 from tank SA06 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: Body site


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA06.12 from tank SA06 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Fermented algae meal (added in in oil coating)

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: distal gut content


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA06.14 from tank SA06 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA06.15 from tank SA06 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Lab Process ID


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA06.16 from tank SA06 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: Experiment

value: amplicon

value: Fermented algae meal (added in in oil coating)