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text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5183

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5184

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5185

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5186

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5187

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5188

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5189

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5190

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5191

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5192

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5193

text: Proficiency Test material (DTU Genomic PT 2020)

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5194

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5195

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:705-5196

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5197

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5198

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5199

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5200

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5201

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5202

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5203

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5204

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5205

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5206

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5207

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5208

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5209

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5210

text: Proficiency Test material (DTU Genomic PT 2020)

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5211

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5212

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5213

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5214

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5215

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:706-5216

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5217

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5218

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5219

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5220

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5221

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5222

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5223

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5224

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5225

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:707-5226

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5227

text: Proficiency Test material (DTU Genomic PT 2020)

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5228

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5229

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5230

text: Escherichia coli

text: Escherichia coli


text: DTU Natioanl Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5231

tag: Namespace:DTU Natioanl Food Institute

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5232

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5233

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5234

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5235

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5236

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5237

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5238

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5239

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:708-5240

text: Campylobacter coli

text: Campylobacter coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5241

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5242

text: Salmonella enterica

text: Salmonella enterica


text: DTU Natioanl Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5243

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5244

text: Proficiency Test material (DTU Genomic PT 2020)

text: Salmonella enterica

text: Salmonella enterica


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5245

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5246

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5247

text: Escherichia coli

text: Escherichia coli


text: DTU National Food Institute

text: public

text: ena-SAMPLE-TAB-07-02-2023-13:40:52:709-5248

text: Campylobacter coli

text: Campylobacter coli


E-MTAB-12574:Sample 1

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 1

tag: Namespace:AstraZeneca, UK

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: A549 cells (CCL-185 on ATCC) were cultured in DMEM medium (Gibco, DMEM, low glucose, GlutaMAX™ Supplement, pyruvate, Catalog number: 21885025) supplemented with 10% heat inactivated Fetal Bovine Serum (FBS), Penicillin (100 U/mL) and Streptomycin (100 U/mL) in a humidified incubator at 37°C; 5% CO2. 10 micromolar miR-200c mimic library or scrambled control. Total RNA from cells was extracted using the RNAdvance Cell kit (Beckman Coulter). RNA extraction was performed using Biomek i7 robotic handler (Beckman Coulter) following manufacturer instructions 55 ng of total RNA were used for RNA-seq library preparation using the KAPA mRNA HyperPrep Kit (Roche) following manufacture’s instruction (KAPA Biosystem, Illumina Platforms) proceeded by TECAN Fluent liquid handing automation system (Tecan). The library was amplified for 14 cycles and quantified using the Fragment Analyzer (Advanced Analytical) with the standard sensitivity NGS kit (Agilent technologies) followed by the library clean-up with 1x volume of AMPure XP beads (Beckman Coulter Life Sciences). All the libraries were pooled and diluted into 1.8 nM quantified using Qubit Fluorometer (ThermoFisher Scientific)

text: adult

characteristic: developmental stage

text: lung cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-12574:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AstraZeneca, UK

characteristic: INSDC center name

text: public

text: E-MTAB-12574:Sample 2

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 2


E-MTAB-12574:Sample 3

text: AstraZeneca, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12574:Sample 3

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 3


E-MTAB-12574:Sample 10

text: AstraZeneca, UK

text: public

characteristic: SRA accession

text: E-MTAB-12574:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 10


E-MTAB-12574:Sample 11

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 11

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 11

characteristic: title


E-MTAB-12574:Sample 12

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 12

text: ArrayExpress

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung cancer

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 12


E-MTAB-12574:Sample 13

characteristic: ENA-CHECKLIST

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 13

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

characteristic: organism part

text: Homo sapiens

text: Sample 13


E-MTAB-12574:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 14

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 14


E-MTAB-12574:Sample 15

text: AstraZeneca, UK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12574:Sample 15

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 15


E-MTAB-12574:Sample 16

text: AstraZeneca, UK

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12574:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 16


E-MTAB-12574:Sample 17

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 17

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 17


E-MTAB-12574:Sample 18

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 18

text: ArrayExpress

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 18

characteristic: title


E-MTAB-12574:Sample 19

characteristic: ENA-CHECKLIST

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 19

text: ArrayExpress

text: human

text: adult

text: lung cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 19


E-MTAB-12574:Sample 20

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 20

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

characteristic: organism part

text: Homo sapiens

text: Sample 20


E-MTAB-12574:Sample 21

characteristic: External Id

text: AstraZeneca, UK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12574:Sample 21

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 21


E-MTAB-12574:Sample 22

text: AstraZeneca, UK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12574:Sample 22

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 22


E-MTAB-12574:Sample 23

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 23


E-MTAB-12574:Sample 24

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 24

text: ArrayExpress

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung cancer

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 24


E-MTAB-12574:Sample 25

characteristic: ENA-CHECKLIST

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 25

text: ArrayExpress

text: human

text: adult

text: lung cancer

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 25

characteristic: title


E-MTAB-12574:Sample 26

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 26

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 26


E-MTAB-12574:Sample 27

characteristic: External Id

text: AstraZeneca, UK

characteristic: INSDC center name

text: public

text: E-MTAB-12574:Sample 27

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

characteristic: organism part

text: Homo sapiens

text: Sample 27


E-MTAB-12574:Sample 28

text: AstraZeneca, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12574:Sample 28

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 28


E-MTAB-12574:Sample 29

text: AstraZeneca, UK

text: public

characteristic: SRA accession

text: E-MTAB-12574:Sample 29

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 29


E-MTAB-12574:Sample 30

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 30

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 30


E-MTAB-12574:Sample 31

characteristic: ENA-CHECKLIST

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 31

text: ArrayExpress

text: human

text: adult

text: lung cancer

characteristic: disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 31


E-MTAB-12574:Sample 32

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 32

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 32

characteristic: title


E-MTAB-12574:Sample 33

characteristic: External Id

text: AstraZeneca, UK

characteristic: INSDC center name

text: public

text: E-MTAB-12574:Sample 33

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 33


E-MTAB-12574:Sample 34

text: AstraZeneca, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12574:Sample 34

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

characteristic: organism part

text: Homo sapiens

text: Sample 34


E-MTAB-12574:Sample 35

text: AstraZeneca, UK

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12574:Sample 35

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 35


E-MTAB-12574:Sample 36

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 36

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 36


E-MTAB-12574:Sample 37

characteristic: ENA-CHECKLIST

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 37

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: lung cancer

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 37


E-MTAB-12574:Sample 38

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 38

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 38


E-MTAB-12574:Sample 39

characteristic: External Id

text: AstraZeneca, UK

characteristic: INSDC center name

text: public

text: E-MTAB-12574:Sample 39

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 39

characteristic: title


E-MTAB-12574:Sample 4

text: AstraZeneca, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12574:Sample 4

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 4


E-MTAB-12574:Sample 5

text: AstraZeneca, UK

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12574:Sample 5

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

characteristic: organism part

text: Homo sapiens

text: Sample 5


E-MTAB-12574:Sample 6

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 6

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 6


E-MTAB-12574:Sample 7

characteristic: ENA-CHECKLIST

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 7

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 7


E-MTAB-12574:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 8

text: ArrayExpress

text: human

text: adult

text: lung cancer

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 8


E-MTAB-12574:Sample 9

characteristic: External Id

text: AstraZeneca, UK

characteristic: INSDC center name

text: public

text: E-MTAB-12574:Sample 9

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 9


E-MTAB-12574:Sample 40

text: AstraZeneca, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12574:Sample 40

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 40

characteristic: title


E-MTAB-12574:Sample 41

text: AstraZeneca, UK

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12574:Sample 41

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 41


E-MTAB-12574:Sample 42

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 42

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

characteristic: organism part

text: Homo sapiens

text: Sample 42


E-MTAB-12574:Sample 43

characteristic: ENA-CHECKLIST

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 43

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 43


E-MTAB-12574:Sample 44

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 44

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 44


E-MTAB-12574:Sample 45

characteristic: External Id

text: AstraZeneca, UK

characteristic: INSDC center name

text: public

text: E-MTAB-12574:Sample 45

text: ArrayExpress

text: human

text: adult

text: lung cancer

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 45


E-MTAB-12574:Sample 46

text: AstraZeneca, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12574:Sample 46

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 46


E-MTAB-12574:Sample 47

text: AstraZeneca, UK

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12574:Sample 47

text: ArrayExpress

text: human

text: adult

text: lung cancer

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 47

characteristic: title


E-MTAB-12574:Sample 48

text: AstraZeneca, UK

text: public

text: E-MTAB-12574:Sample 48

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: lung cancer

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung epithelium

text: Homo sapiens

text: Sample 48


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Department of Medicine, Surgery and Dentistry 'Scuola Medica Salernitana', University of Salerno, Baronissi (SA),

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: The SV40-immortalized human bronchial epithelial cell line BEAS-2B (ATCC) was cultured in DMEM/Ham’s F12 (EuroClone) supplemented with 5% heat-inactivated FBS (EuroClone), 2 mM L-glutamine (Lonza), penicillin (100 U/ml)-streptomycin (100 mg/ml) (Lonza) and 0.2% fungizone (EuroClone). (Fan J et al, 2011). Human small airway epithelial cells (HSAECs, PCS-301-010, ATCC) were cultured in Airway Epithelial Cell Basal Medium (PCS-300-030, ATCC) supplemented with Bronchial Epithelial Growth Kit (PCS-300-040, ATCC). Both cell lines were incubated at 37°C, 5% CO2. RNA was extracted using TriFast reagent (EuroClone) TruSeq library Prep Kit (Illumina)

text: normal

text: Homo sapiens

text: Homo sapiens

text: epithelium of bronchus

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Medicine, Surgery and Dentistry 'Scuola Medica Salernitana', University of Salerno, Baronissi (SA),

text: public

text: ArrayExpress

text: human

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: epithelium of bronchus

text: Homo sapiens


characteristic: External Id

text: VANDERBILT UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:VANDERBILT UNIVERSITY

text: ArrayExpress

text: house mouse

text: Protocols: HA-ZFP92 lentivirus-infected MIN6 cells were trypsinized and washed 2 times with 1%BSA in PBS solution(150x103 cells were used per pull-down). The CUT&RUN (Cleavage Under Targets and Release Using Nuclease) assay was performed by using the CUT&RUN Assay KIT (#86652 Cell Signaling Technology) following the manufacturer’s protocol. For anti-HA-ZFP92 pulldowns from MIN6 cells, rabbit anti-HA antibodies (#3724) and normal rabbit control IgGs from the kit were used (all antibodies are from Cell Signaling). Briefly, buffer-washed cells were bound to Concanavalin A-coated magnetic beads, permeabilized with 0.05% digitonin buffer, incubated with antibodies at 4°C overnight, washed twice with digitonin buffer, and incubated with Protein A-MNase (pA-MN) for 1 hour at 4°C. After two washes, cell-bound beads were incubated for 30 min at 4°C in 2 mM CaCl2 for pA-MN digestion, then incubated with RNAse-containing Stop Buffer (30 min. at 37°C) to release DNA. DNA was further purified using spin columns (14209S, Cell Signaling) and directly used for library prep or qPCR. DNA was processed through the ChIP-seq library preparation

text: adult

characteristic: developmental stage

text: insulinoma

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus


text: VANDERBILT UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: adult

text: insulinoma

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus


text: Utrecht university

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Utrecht university

text: Unplanted soil COMP1

text: fungus metagenome

characteristic: organism

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

characteristic: Submitter Id

text: Unplanted soil COMP2

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II

characteristic: title


characteristic: ENA-CHECKLIST

text: Utrecht university

text: public

text: Unplanted soil COMP3

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Unplanted soil COMP4

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Unplanted soil COMP5

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Soil COMP1

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Soil COMP2

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Soil COMP3

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Soil COMP4

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Soil COMP5

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Hyphal COMP5

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Utrecht university

text: public

text: Root COMP3

text: fungus metagenome

text: fungus metagenome

text: Compartment Experiment II


text: Wellcome Sanger Institute

text: public

tag: Namespace:Wellcome Sanger Institute

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: surgical terminal of pregnancy

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Tissue samples used for this study were obtained with written informed consent from all participants in accordance with the guidelines in The Declaration of Helsinki 2000. Single-nuclei extraction: Fresh tissue samples of human implantation sites were embedded in cold OCT medium and flash frozen using a dry ice-isopentane slurry. Protocol available at doi:10.17504/protocols.io.95mh846. Single-nuclei suspensions were isolated from frozen tissue sections following manufacturer's instructions. For each OCT-embedded sample, 400 μm of tissue was prepared as 50 μm cryosections, which were paused in a tube on dry ice until subsequent processing. Nuclei were released via Dounce homogenisation. Single-cell extraction: We used the previous protocol optimised for the decidual-placental interface (Vento-Tromo et al 2018, Nature). Briefly, decidual tissues were enzymatically digested in 15 ml 0.4 mg/ml collagenase V (Sigma, C-9263) solution in RPMI 1640 medium (Thermo Fisher Scientific, 21875-034)/10% FCS (Biosfera, FB-1001) at 37 °C for 45 min. The supernatant was diluted with medium and passed through a 100-μm cell sieve (Corning, 431752) and then a 40-μm cell sieve (Corning, 431750). The flow-through was centrifuged and resuspended in 5 ml of red blood cell lysis buffer (Invitrogen, 00-4300) for 10 min. Placental villi were scraped from the chorionic membrane using a scalpel and the stripped membrane was discarded. The resultant villous tissue was enzymatically digested in 70 ml 0.2% trypsin 250 (Pan Biotech P10-025100P)/0.02% EDTA (Sigma E9884) in PBS with stirring at 37 °C for 9 min. The disaggregated cell suspension was diluted with medium and passed through a 100-μm cell sieve (Corning, 431752). The undigested gelatinous tissue remnant was retrieved from the gauze and further digested with 10-15 ml collagenase V at 1.0 mg/ml (Sigma C9263) in Ham’s F12 medium/10% FBS with gentle shaking at 37 °C for 10 min. The disaggregated cell suspension was diluted with medium and passed through a 100-μm cell sieve (Corning, 431752). Cells obtained from both enzyme digests were pooled together and passed through a 100-μm cell sieve (Corning, 431752) and washed in Ham’s F12. The flow-through was centrifuged and resuspended in 5 ml of red blood cell lysis buffer (Invitrogen, 00-4300) for 10 min. For the scRNA-seq experiments, cells were loaded according to the manufacturer’s protocol for the Chromium Single Cell 3′ Kit v3.0, v3.1 and 5’ v1.0 (10X Genomics). Library preparation was carried out according to the manufacturer’s protocol to attain between 2,000 and 10,000 cells per reaction. For the snRNA-seq experiments, nuclei were loaded according to the manufacturer’s protocol for the Chromium Single Cell Multiome ATAC + Gene Expression v1.0 to attain between 2,000 and 10,000 cells per well. Library preparation was carried out according to the manufacturer’s protocol.

text: embryo

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: placenta

text: single-cell RNA sequencing

characteristic: protocol

text: maternal fetal interface

characteristic: sampling site

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

text: ArrayExpress

text: surgical terminal of pregnancy

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: placenta

characteristic: organism part

text: single-nuclei RNA sequencing

text: maternal fetal interface

text: Homo sapiens


text: Wellcome Sanger Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: medical termination of pregnancy

text: human

text: embryo

text: normal

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: placenta

text: single-cell RNA sequencing

text: maternal fetal interface

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Wellcome Sanger Institute

text: public

text: 12 to 13

characteristic: age

text: ArrayExpress

characteristic: broker name

text: surgical terminal of pregnancy

characteristic: clinical information

text: human

characteristic: common name

text: embryo

text: normal

text: H7 + H9 pooled

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: placenta

text: single-cell RNA sequencing

text: maternal fetal interface

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

text: public

text: digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: fecal sample

characteristic: description

text: organic matter

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: host body site

text: Asthmatic

characteristic: host disease status

characteristic: host subject id

text: intestine environment

characteristic: local environmental context

text: TAAGGCGA-CTCTCTAT

characteristic: multiplex identifiers

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGS-GL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: digestive tract environment

text: fecal sample

text: organic matter

text: USA

text: gut

text: Healthy

text: intestine environment

text: TAAGGCGA-TATCCTCT

text: human gut metagenome

characteristic: organism

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome

characteristic: title


characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

text: public

text: digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: fecal sample

characteristic: description

text: organic matter

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: host body site

text: Healthy

text: intestine environment

text: TAAGGCGA-AGAGTAGA

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGS-GL

characteristic: INSDC first public

text: public

text: digestive tract environment

text: fecal sample

text: organic matter

text: USA

text: gut

text: Healthy

characteristic: host disease status

characteristic: host subject id

text: intestine environment

characteristic: local environmental context

text: TAAGGCGA-GTAAGGAG

characteristic: multiplex identifiers

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: gut metagenome


characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: fecal sample

text: organic matter

text: USA

text: gut

text: Asthmatic

text: intestine environment

text: TAAGGCGA-ACTGCATA

text: human gut metagenome

characteristic: organism

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGS-GL

characteristic: INSDC first public

text: public

text: digestive tract environment

text: fecal sample

characteristic: description

text: organic matter

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: host body site

text: Healthy

text: intestine environment

text: TAAGGCGA-AAGGAGTA

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome


characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: digestive tract environment

text: fecal sample

text: organic matter

text: USA

text: gut

text: Healthy

characteristic: host disease status

characteristic: host subject id

text: intestine environment

characteristic: local environmental context

text: TAAGGCGA-TGGCCATG

characteristic: multiplex identifiers

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGS-GL

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: fecal sample

text: organic matter

text: USA

text: gut

text: Healthy

text: intestine environment

text: TAAGGCGA-CTAAGCCT

text: human gut metagenome

characteristic: organism

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome

characteristic: title


characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: digestive tract environment

text: fecal sample

characteristic: description

text: organic matter

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: host body site

text: Healthy

text: intestine environment

text: TAAGGCGA-GCGTAAGA

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGS-GL

characteristic: INSDC first public

text: public

text: digestive tract environment

text: fecal sample

text: organic matter

text: USA

text: gut

text: Healthy

characteristic: host disease status

characteristic: host subject id

text: intestine environment

characteristic: local environmental context

text: CGTACTAG-CTCTCTAT

characteristic: multiplex identifiers

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: gut metagenome


characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: fecal sample

text: organic matter

text: USA

text: gut

text: Healthy

text: intestine environment

text: CGTACTAG-TATCCTCT

text: human gut metagenome

characteristic: organism

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGS-GL

characteristic: INSDC first public

text: public

text: digestive tract environment

text: fecal sample

characteristic: description

text: organic matter

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: host body site

text: Healthy

text: intestine environment

text: CGTACTAG-AGAGTAGA

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

text: human gut metagenome

text: Illumina NovaSeq 6000

text: gut metagenome


characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: digestive tract environment

text: fecal sample

text: organic matter

text: USA

text: gut

text: Healthy

characteristic: host disease status

characteristic: host subject id

text: intestine environment

characteristic: local environmental context

text: CGTACTAG-GTAAGGAG

characteristic: multiplex identifiers

text: human gut metagenome

text: MARS Fecal Nextera Shotgun Sequencing

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGS-GL

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: digestive tract environment

characteristic: broad-scale environmental context

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