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text: Dønna; Nordland county

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text: Atlantic salmon

text: Sanford Blue Mussel Meal

text: Mars: SB Control

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Mars

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Genome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host genomic data from Distal gut content; animal SB11.30 from tank SB11 with treatment Mars

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Sanford Blue Mussel Meal

characteristic: host diet

text: Mars: SB Control

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Mars

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Genome

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

characteristic: title

value: Project

value: HoloFood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host genomic data from Distal gut content; animal SB12.01 from tank SB12 with treatment Venus

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Sanford Blue Mussel Meal

text: Venus: SB 8.7% blue mussel meal

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Venus

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Genome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host genomic data from Distal gut content; animal SB12.02 from tank SB12 with treatment Venus

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Sanford Blue Mussel Meal

characteristic: host diet

text: Venus: SB 8.7% blue mussel meal

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Venus

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Genome

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host genomic data from Distal gut content; animal SB12.03 from tank SB12 with treatment Venus

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Sanford Blue Mussel Meal

text: Venus: SB 8.7% blue mussel meal

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Venus

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Genome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host genomic data from Distal gut content; animal SB12.04 from tank SB12 with treatment Venus

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Sanford Blue Mussel Meal

characteristic: host diet

text: Venus: SB 8.7% blue mussel meal

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Venus

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: HoloFood Salmon - Host Genome

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon host genomic data from Distal gut content; animal SB12.05 from tank SB12 with treatment Venus

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Sanford Blue Mussel Meal

text: Venus: SB 8.7% blue mussel meal

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Venus

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: HoloFood Salmon - Host Genome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CA03.14 from cage CA03 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Genome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: title

characteristic: trial length

type: BIOGENIC AMINES

value: ng used for library build

value: Raw sequence name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CA06.05 from cage CA06 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Ileum content

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Genome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

characteristic: sequencing method

characteristic: trial timepoint

value: Chicken


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CA13.03 from cage CA13 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Genome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: title

characteristic: trial length

value: Body site

value: ileum content

value: Sequencing company

value: BGI


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CA19.13 from cage CA19 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Ileum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

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characteristic: project name

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text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

characteristic: sequencing method

characteristic: trial timepoint

value: Lab Process ID

value: Pool


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CA19.18 from cage CA19 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Genome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: title

characteristic: trial length

value: Organism

value: UCPH

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CA21.09 from cage CA21 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Ileum content

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

text: male

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

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characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

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characteristic: project name

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characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

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characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

characteristic: sequencing method

characteristic: trial timepoint

value: Experiment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: chicken

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text: Chicken host genomic data from Ileum content; animal CA24.01 from cage CA24 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum content

characteristic: host body site

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characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

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characteristic: host sex

characteristic: host storage container temperature

text: BEST

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characteristic: organism

text: HoloFood

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characteristic: title

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value: genomics

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF COPENHAGEN

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: chicken

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text: Chicken host genomic data from Ileum content; animal CB07.06 from cage CB07 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Ileum content

text: Cobb

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text: Prebiotic

text: Gallus gallus

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characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

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text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

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characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

characteristic: sequencing method

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CB10.16 from cage CB10 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

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characteristic: organism

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text: E-matrix 2ml

text: UCPH

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CB20.03 from cage CB20 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Ileum content

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Genome

characteristic: project name

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text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

characteristic: sequencing method

characteristic: trial timepoint

value: ng used for library build


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CC09.13 from cage CC09 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Campylobacter:+;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

text: BEST

text: PCR

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text: Gallus gallus

characteristic: organism

text: HoloFood

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characteristic: title

characteristic: trial length

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CC11.15 from cage CC11 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Ileum content

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Genome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

characteristic: sequencing method

characteristic: trial timepoint

value: Chicken


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CC20.14 from cage CC20 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

text: BEST

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Genome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: title

characteristic: trial length


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken host genomic data from Ileum content; animal CC19.18 from cage CC19 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Ileum content

text: Ross

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Genome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

characteristic: sequencing method

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Manchester

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Manchester

characteristic: Submitter Id

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: The null mutants were made as part of a 484-member transcription factor knockout library by the Bromley lab. Reference to how the null mutants were derived can be found in: Furukawa, T., van Rhijn, N., Fraczek, M., Gsaller, F., Davies, E., Carr, P., Gago, S., Fortune-Grant, R., Rahman, S., Gilsenan, J.M. and Houlder, E., 2020. The negative cofactor 2 complex is a key regulator of drug resistance in Aspergillus fumigatus. Nature communications, 11(1), pp.1-16. Aspergillus fumigatus A1160p+ (MFIG001) and transcription factor null mutants conidia were grown on Sabouraud Dextrose agar incubated at 37°C for 48 hours. Spores were harvested in PBS + 0.01% Tween-20 by filtration through Miracloth. Spores were counted using a haemocytometer. 1x10^6 spores/mL of A. fumigatus MFIG001, ΔdevR and ΔacdX were inoculated into 50 mL of Aspergillus complete media (ACM) and incubated for 18 hours at 37°C in a rotary shaker (180 rpm). Mycelia was harvested using filtration through Miracloth and washed in 1x RPMI-1640 medium. 1g of mycelia was added to shake flasks containing 50 mL RPMI-1640 medium, 165 mM MOPS buffer (pH 7.0), 2% glucose and incubated for 1 hour at 37°C in a rotary shaker (180rpm) in the presence or absence of 62.5 µg/L Olorofim. Mycelia was filtered through Miracloth and snapfrozen using liquid nitrogen and kept at -80°C until required. For RNA extractions, 1 mL of TRIzol reagent and 710-1180 μm acid washed glass beads were added to frozen mycelia and placed in a TissueLyser II® for 3 minutes at 30 Hz. The solution was centrifuged (12,000 rpm) for 1 minute at 4°C. The aqueous phase was added to 200 μL of chloroform and centrifuged (12,000 rpm) for 10 minutes at room temperature. The supernatant was added to 0.2 M sodium citrate, 0.3 M sodium chloride and 25% (v/v) isopropanol and left at room temperatures for 10 minutes. This solution was centrifuged (12,000 rpm) for 15 minutes at 4°C. The supernatant was removed; the pellet was washed in 70% (v/v) ethanol and resuspended in RNase free water. RNA samples were treated with RQ1 RNase-Free DNase and purified using a RNeasy Mini Kit. RNA quality and quantity were assessed using gel electrophoresis and using a NanoDropTM 2000/2000c Spectrophotometer. Sequencing libraries were prepared from mRNA using TruSeq® Stranded mRNA.

characteristic: description

text: mycelial expansion

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Aspergillus fumigatus

characteristic: organism

text: Aspergillus fumigatus

text: mycelium

characteristic: organism part

characteristic: replicate

text: Aspergillus fumigatus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Manchester

text: public

text: ArrayExpress

text: mycelial expansion

text: devR

text: Aspergillus fumigatus

text: Aspergillus fumigatus

text: mycelium

text: Aspergillus fumigatus


characteristic: External Id

text: University of Manchester

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: mycelial expansion

text: acdX

text: Aspergillus fumigatus

text: Aspergillus fumigatus

text: mycelium

text: Aspergillus fumigatus


E-MTAB-10753:Prpf8Y2334N - 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10753:Prpf8Y2334N - 2

tag: Namespace:Laboratory of Genomics and Bioinformatics Institute of Molecular Genetics of the Czech Academy of Sciences

unit: week

text: B

characteristic: batch

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Freshly dissected cerebellae (bulk tissue) were briefly rinsed in ice-cold PBS and immediately homogenized in 750 μL of TRIzol reagent (Thermo Fischer). Total RNA was extracted using Direct-Zol RNA Miniprep Kit (Zymo reseach) including in-column DNase-I treatment. Libraries from samples collected from 4-weeks old Prpf8Δ17 mice were generated using Total RNA-Seq Library Prep Kit (Lexogen). Cerebellar specimen gained from 4-weeks old Prpf8Y2334N mice were processed using KAPA RNA Hyperprep Kit with RiboErase (Kapa Biosystems/Roche).

text: adult

text: wild type genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Prpf8Y2334N - 2


E-MTAB-10753:Prpf8Y2334N - 4

text: Laboratory of Genomics and Bioinformatics Institute of Molecular Genetics of the Czech Academy of Sciences

text: public

text: E-MTAB-10753:Prpf8Y2334N - 4

characteristic: Submitter Id

characteristic: age

text: B

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: male

text: Prpf8Y2334N - 4


E-MTAB-10753:Prpf8Y2334N - 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10753:Prpf8Y2334N - 6

text: B

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Prpf8Y2334N - 6

characteristic: title


E-MTAB-10753:Prpf8Y2334N - 9

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10753:Prpf8Y2334N - 9

text: B

characteristic: batch

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: female

characteristic: sex

text: Prpf8Y2334N - 9


E-MTAB-10753:Prpf8Δ17 - 1

text: public

text: E-MTAB-10753:Prpf8Δ17 - 1

characteristic: Submitter Id

characteristic: age

text: A

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: strain

text: Prpf8Δ17 - 1


E-MTAB-10753:Prpf8Δ17 - 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10753:Prpf8Δ17 - 10

text: A

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: female

text: Prpf8Δ17 - 10


E-MTAB-10753:Prpf8Δ17 - 7

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10753:Prpf8Δ17 - 7

text: A

characteristic: batch

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: female

text: Prpf8Δ17 - 7

characteristic: title


E-MTAB-10753:Prpf8Δ17 - 4

text: public

text: E-MTAB-10753:Prpf8Δ17 - 4

characteristic: Submitter Id

characteristic: age

text: A

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: sex

text: Prpf8Δ17 - 4


E-MTAB-10753:Prpf8Y2334N - 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10753:Prpf8Y2334N - 1

text: B

text: ArrayExpress

text: house mouse

text: adult

text: Prpf8 Y2334N/Y2334N

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: strain

text: Prpf8Y2334N - 1


E-MTAB-10753:Prpf8Y2334N - 10

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10753:Prpf8Y2334N - 10

text: B

characteristic: batch

text: ArrayExpress

text: house mouse

text: adult

text: Prpf8 Y2334N/Y2334N

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: female

text: Prpf8Y2334N - 10


E-MTAB-10753:Prpf8Y2334N - 3

text: public

text: E-MTAB-10753:Prpf8Y2334N - 3

characteristic: Submitter Id

characteristic: age

text: B

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Prpf8 Y2334N/Y2334N

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: female

text: Prpf8Y2334N - 3

characteristic: title


E-MTAB-10753:Prpf8Y2334N - 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10753:Prpf8Y2334N - 5

text: B

text: ArrayExpress

text: house mouse

text: adult

text: Prpf8 Y2334N/Y2334N

characteristic: individual

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: sex

text: Prpf8Y2334N - 5


E-MTAB-10753:Prpf8Y2334N - 7

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10753:Prpf8Y2334N - 7

text: B

characteristic: batch

text: ArrayExpress

text: house mouse

text: adult

text: Prpf8 Y2334N/Y2334N

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: strain

text: Prpf8Y2334N - 7


E-MTAB-10753:Prpf8Y2334N - 8

text: public

text: E-MTAB-10753:Prpf8Y2334N - 8

characteristic: Submitter Id

characteristic: age

text: B

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Prpf8 Y2334N/Y2334N

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: male

text: Prpf8Y2334N - 8


E-MTAB-10753:Prpf8Δ17 - 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10753:Prpf8Δ17 - 2

text: A

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: Prpf8 Δ17/Δ17

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Prpf8Δ17 - 2

characteristic: title


E-MTAB-10753:Prpf8Δ17 - 3

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10753:Prpf8Δ17 - 3

text: A

characteristic: batch

text: ArrayExpress

text: house mouse

text: adult

text: Prpf8 Δ17/Δ17

characteristic: individual

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: sex

text: Prpf8Δ17 - 3


E-MTAB-10753:Prpf8Δ17 - 5

text: public

text: E-MTAB-10753:Prpf8Δ17 - 5

characteristic: Submitter Id

characteristic: age

text: A

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Prpf8 Δ17/Δ17

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: strain

text: Prpf8Δ17 - 5


E-MTAB-10753:Prpf8Δ17 - 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10753:Prpf8Δ17 - 6

text: A

text: ArrayExpress

text: house mouse

text: adult

text: Prpf8 Δ17/Δ17

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: male

text: Prpf8Δ17 - 6


E-MTAB-10753:Prpf8Δ17 - 9

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10753:Prpf8Δ17 - 9

text: A

characteristic: batch

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: Prpf8 Δ17/Δ17

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: female

text: Prpf8Δ17 - 9

characteristic: title


text: UNIVERSITY OF COPENHAGEN

text: public

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CA01.01 from cage CA01 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Extreme Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: metagenomics

value: Body site

value: caecum content

type: TRIAL

value: Trial code

value: CA

value: Trial end


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CA01.11 from cage CA01 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Extreme Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: Organism

value: Trial description

value: Trial 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CA01.06 from cage CA01 with treatment CC

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Extreme Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Sample code

value: Experiment

value: Trial start


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CA02.04 from cage CA02 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: chicken gut metagenome

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Extreme Chicken

text: Shield

text: E-matrix 2ml

text: UCPH

text: chicken gut metagenome

characteristic: title

value: Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Chicken Gut Metagenome

characteristic: common name

text: Chicken gut metagenomic data from Caecum content; animal CA02.08 from cage CA02 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - Extreme Chicken

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: chicken gut metagenome

characteristic: sequencing method

characteristic: trial length

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