characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tobias Kaiser

text: not available

characteristic: common name

text: Individual 14 from the population Ros-2NM

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: 48� 43' 40'' N

characteristic: geographic location (latitude)

text: 3� 59' 06'' W

characteristic: geographic location (longitude)

text: Roscoff, France

text: Intertidal zones of rocky marine shores

text: Tobias Kaiser

text: Imago

text: Clunio marinus

text: Whole body

text: Clunio marinus

characteristic: scientific name

text: male

characteristic: title


status: PUBLIC

tag: attribute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

characteristic: Submitter Id

text: Tobias Kaiser

characteristic: collected by

text: Max Planck Institute for Evolutionary Biology, August-Thienemann-Strasse 2, 24306 Pl�n, Germany

characteristic: collecting institution

characteristic: collection date

text: not available

text: Individual 15 from the population Ros-2NM

characteristic: description

text: Atlantic Ocean

text: 48� 43' 40'' N

unit: DD

text: 3� 59' 06'' W

text: Roscoff, France

characteristic: geographic location (region and locality)

text: Intertidal zones of rocky marine shores

characteristic: habitat

text: Tobias Kaiser

characteristic: identified by

text: Imago

characteristic: lifestage

text: Clunio marinus

characteristic: organism

text: Whole body

characteristic: organism part

text: An oligogenic architecture underlying ecological and reproductive divergence in sympatric populations

characteristic: project name

text: Clunio marinus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tobias Kaiser

text: not available

characteristic: common name

text: Individual 16 from the population Ros-2NM

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: 48� 43' 40'' N

characteristic: geographic location (latitude)

text: 3� 59' 06'' W

characteristic: geographic location (longitude)

text: Roscoff, France

text: Intertidal zones of rocky marine shores

text: Tobias Kaiser

text: Imago

text: Clunio marinus

text: Whole body

text: Clunio marinus

characteristic: scientific name

text: male

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Tobias Kaiser

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

text: not available

text: Individual 17 from the population Ros-2NM

characteristic: description

text: Atlantic Ocean

text: 48� 43' 40'' N

text: 3� 59' 06'' W

text: Roscoff, France

characteristic: geographic location (region and locality)

text: Intertidal zones of rocky marine shores

characteristic: habitat

text: Tobias Kaiser

characteristic: identified by

text: Imago

characteristic: lifestage

text: Clunio marinus

text: Whole body

text: Clunio marinus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tobias Kaiser

text: not available

characteristic: common name

text: Individual 18 from the population Ros-2NM

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: 48� 43' 40'' N

text: 3� 59' 06'' W

text: Roscoff, France

text: Intertidal zones of rocky marine shores

text: Tobias Kaiser

text: Imago

text: Clunio marinus

characteristic: organism

text: Whole body

characteristic: organism part

characteristic: project name

text: Clunio marinus

text: male

characteristic: sex


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Tobias Kaiser

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

text: not available

text: Individual 19 from the population Ros-2NM

characteristic: description

text: Atlantic Ocean

text: 48� 43' 40'' N

characteristic: geographic location (latitude)

text: 3� 59' 06'' W

characteristic: geographic location (longitude)

text: Roscoff, France

text: Intertidal zones of rocky marine shores

text: Tobias Kaiser

text: Imago

text: Clunio marinus

text: Whole body

text: Clunio marinus

characteristic: scientific name

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tobias Kaiser

text: not available

characteristic: common name

text: Individual 20 from the population Ros-2NM

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: 48� 43' 40'' N

text: 3� 59' 06'' W

text: Roscoff, France

characteristic: geographic location (region and locality)

text: Intertidal zones of rocky marine shores

characteristic: habitat

text: Tobias Kaiser

characteristic: identified by

text: Imago

characteristic: lifestage

text: Clunio marinus

text: Whole body

text: Clunio marinus

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Tobias Kaiser

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

text: not available

text: Individual 21 from the population Ros-2NM

characteristic: description

text: Atlantic Ocean

text: 48� 43' 40'' N

text: 3� 59' 06'' W

text: Roscoff, France

text: Intertidal zones of rocky marine shores

text: Tobias Kaiser

text: Imago

text: Clunio marinus

characteristic: organism

text: Whole body

characteristic: organism part

characteristic: project name

text: Clunio marinus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tobias Kaiser

text: not available

characteristic: common name

text: Individual 22 from the population Ros-2NM

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: 48� 43' 40'' N

characteristic: geographic location (latitude)

text: 3� 59' 06'' W

characteristic: geographic location (longitude)

text: Roscoff, France

text: Intertidal zones of rocky marine shores

text: Tobias Kaiser

text: Imago

text: Clunio marinus

text: Whole body

text: Clunio marinus

characteristic: scientific name

text: male

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Tobias Kaiser

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

text: not available

text: Individual 23 from the population Ros-2NM

characteristic: description

text: Atlantic Ocean

text: 48� 43' 40'' N

text: 3� 59' 06'' W

text: Roscoff, France

characteristic: geographic location (region and locality)

text: Intertidal zones of rocky marine shores

characteristic: habitat

text: Tobias Kaiser

characteristic: identified by

text: Imago

characteristic: lifestage

text: Clunio marinus

text: Whole body

text: Clunio marinus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tobias Kaiser

text: not available

characteristic: common name

text: Individual 24 from the population Ros-2NM

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: 48� 43' 40'' N

text: 3� 59' 06'' W

text: Roscoff, France

text: Intertidal zones of rocky marine shores

text: Tobias Kaiser

text: Imago

text: Clunio marinus

characteristic: organism

text: Whole body

characteristic: organism part

characteristic: project name

text: Clunio marinus

text: male

characteristic: sex


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Center for Desert Agriculture, King Abdullah University of Science and Technology

characteristic: Submitter Id

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

characteristic: scientific name

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Center for Desert Agriculture, King Abdullah University of Science and Technology

text: public

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: TA5605-sorted-chrom2B_Illumina_sequencing

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Thatcher-whole_genome_Illumina_sequencing

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum


text: public

text: TA10438-whole_genome_Illumina_sequencing

text: Aegilops triuncialis

text: Aegilops triuncialis


text: Karolinska Institute

text: public

tag: Namespace:Karolinska Institute

text: human

characteristic: common name

text: transcriptome of FACS sorted ILC & HLA-DR+ cells from uninfected gastric tissue

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Gastric lamina propria ERC000011

characteristic: tissue_type checklist_accession


text: Karolinska Institute

text: public

text: human

text: transcriptome of FACS sorted ILC & HLA-DR+ cells from H. pylori-infected gastric tissue

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Gastric lamina propria ERC000011


text: Karolinska Institute

text: public

text: human

text: transcriptome of FACS sorted T cells from uninfected gastric tissue

text: Homo sapiens

text: Homo sapiens

text: Gastric lamina propria ERC000011


text: Karolinska Institute

text: public

text: human

text: transcriptome of FACS sorted T cells from H. pylori-infected gastric tissue

text: Homo sapiens

text: Homo sapiens

text: Gastric lamina propria ERC000011


text: Karolinska Institute

text: public

text: human

text: region-specific hashtags of FACS sorted ILC & HLA-DR+ cells from uninfected gastric tissue

text: Homo sapiens

text: Homo sapiens

text: Gastric lamina propria ERC000011


text: Karolinska Institute

text: public

text: human

text: region-specific hashtags of FACS sorted ILC & HLA-DR+ cells from H. pylori-infected gastric tissue

text: Homo sapiens

text: Homo sapiens

text: Gastric lamina propria ERC000011


text: Karolinska Institute

text: public

text: human

text: region-specific hashtags of FACS sorted T cells from uninfected gastric tissue

text: Homo sapiens

text: Homo sapiens

text: Gastric lamina propria ERC000011


text: Karolinska Institute

text: public

text: human

text: region-specific hashtags of FACS sorted T cells from H. pylori-infected gastric tissue

text: Homo sapiens

text: Homo sapiens

text: Gastric lamina propria ERC000011


characteristic: ENA first public

text: public

tag: Namespace:Karolinska Institutet, Department of Microbiology, Tumor and Cell Biology and Science for Life Laboratory

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Mouse livers were perfused and washed with PBS and flash-frozen in liquid nitrogen immediately after animal sacrifice and stored at -80C until use. 5 to 6-week-old male and female C57BL/6J mice obtained from in-house breeding were put on a control (D12450J, 10% kcal fat, Research Diet) or high-fat diet (D12492, 60% kcal fat, Research Diet) for 13 weeks. Subsets of male and female mice on HFD were additionally injected interperitoneally with the estrogenic ligands 17-beta-estradiol (E2, 0.5 mg/kg body weight, Sigma Aldrich), 4,4',4''-(4-Propyl-[1H]-pyrazole-1,3,5-triyl)trisphenol (PPT, 2.5 mg/kg body weight, Tocris), 2,3-Bis(4-hydroxyphenyl)propionitrile (DPN, 5 mg/kg body weight, Tocris) and 4-(2-(3,5-dimethylisoxazol-4-yl)-1H-indol-3-yl)phenol (DIP) or given a sham injection every second day from week ten to week 13. The ligands were diluted in 55 % water, 40 % PEG400 and 5% DMSO. Raw sequencing output was demultiplexed and converted to fastq files by the inbuilt Illumina bcl2fastq tool. Individual lanes were contatenated to one fastq file per sample (cat file1.fastq file2.fastq file3.fastq file4.fastq > file5.fastq). Approximately 20 µg of flash-frozen liver tissue was homogenized in 700 µL Qiazol (Qiagen) using a TissueLyzer II (Qiagen, 2min, 25 Hz, 2 times). The samples were incubated on room temperature for 5min, before adding 140 µL chloroform (Sigma Aldrich). This mixture was shaken for 15s, incubated for 3min, and centrifuged at 9000 x g and 4°C for 5min. The aqueous phase was carefully removed, and an equal volume of isopropanol added. This mixture was incubated at room temperature for 10min, before centrifugation at 20.000 x g and 4°C for 10min. Supernatant was removed and the pellet washed twice with 70% ethanol, air-dried and resuspended in water. The isolated RNA was DNase treated using the Turbo DNase Kit (ThermoFisher) according to the manufacturer’s instructions. In brief, 10 µg of RNA was treated with 2U DNase and 40U RNaseOUT (Thermo Fisher) at 37°C for 30min, before treatment with DNase inactivation reagent for 5min under constant homogenization. The sample was centrifuged at 10.000 x g for 2min to remove the inactivation reagent. To purify the obtained DNase-treated RNA, the RNA was diluted to 130 µL with water, before adding 20 µL sodium acetate (Thermo Fisher, 3M, pH 5.2), 1 µL GlycoBlue (ThermoFisher) and 600 µL ice-cold 99.8% ethanol. Next, the RNA was precipitated at -80°C overnight, before centrifugation at 20.000 x g for 30min, washing the pellet twice with 70% ethanol, air-drying and resuspending in water. The RNA quality was assessed on a Bioanalyzer 2100 device using RNA Nano chips (Agilent) and only high quality RNAs (RIN > 6.5) were used for RNA-sequencing. Strand-specific RNA libraries were generated using the NEBNext Ultra II stranded library kit (NEB) combined with polyA-coupled beads (NEB) according to the manufacturer’s instructions. The library quality was assessed on a Bioanalyzer 2100 device using DNA High Sensitivity chips (Agilent) and quantified using a KAPA library quantification KIT (Roche).

text: adult

characteristic: developmental stage

text: control diet

characteristic: diet

text: wild type genotype

characteristic: genotype

text: Sample 1

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Karolinska Institutet, Department of Microbiology, Tumor and Cell Biology and Science for Life Laboratory

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: control diet

text: wild type genotype

text: Sample 2

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: title


characteristic: ENA first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: control diet

text: wild type genotype

text: Sample 3

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: female


text: public

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: control diet

characteristic: diet

text: wild type genotype

characteristic: genotype

text: Sample 4

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: adult

text: control diet

text: wild type genotype

text: Sample 9

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: control diet

text: wild type genotype

text: Sample 10

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: control diet

characteristic: diet

text: wild type genotype

text: Sample 11

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

text: adult

text: control diet

text: wild type genotype

characteristic: genotype

text: Sample 12

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA first public

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

text: Sample 17

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: high fat diet

text: wild type genotype

text: Sample 18

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: wild type genotype

text: Sample 19

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: ENA first public

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

characteristic: genotype

text: Sample 20

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

text: Sample 21

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: high fat diet

text: wild type genotype

text: Sample 22

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


characteristic: ENA first public

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: wild type genotype

text: Sample 23

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

characteristic: genotype

text: Sample 24

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

text: Sample 25

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA first public

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: high fat diet

text: wild type genotype

text: Sample 26

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: wild type genotype

text: Sample 27

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

characteristic: genotype

text: Sample 28

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA first public

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

text: Sample 5

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: high fat diet

text: wild type genotype

text: Sample 6

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: wild type genotype

text: Sample 7

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: female


characteristic: ENA first public

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

characteristic: genotype

text: Sample 8

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

text: Sample 13

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: high fat diet

text: wild type genotype

text: Sample 14

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


characteristic: ENA first public

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: wild type genotype

text: Sample 15

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

characteristic: genotype

text: Sample 16

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

text: Sample 29

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA first public

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: high fat diet

text: wild type genotype

text: Sample 30

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: wild type genotype

text: Sample 31

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: wild type genotype

characteristic: genotype

text: Sample 32

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


name: E-MTAB-11906:HapR N-terminal 3xFLAG sample A

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:School of Biosciences, University of Birmingham

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: The Vibrio cholerae O1 El Tor strain E7946 was isolated in Brazil (Levine MM, Black RE, Clements ML, Cisneros L, Saah A, Nalin DR, et al. The pathogenicity of nonenterotoxigenic Vibrio cholerae serogroup O1 biotype El Tor isolated from sewage water in Brazil. J Infect Dis. 1982;145: 296-299). Cells were grown in liquid LB minimal medium at 37 degrees with shaking. Immunoprecipitations were done as described by Haycocks et al. (PLoS Pathog. 2015. 11:e1004605) using Vibrio cholerae strain E7946. After growing cells to midlog phase, crosslinking, and sonication, protein DNA complexes were immunoprecipitated using anti-FLAG. Libraries were prepared using immunoprecipited protein-DNA complexes immobilised with Protein A-sepharose. DNA fragments were then blunt ended, A-tailed and barcoded. This was done using an NEB quick blunting and ligation kit, the Klenow fragment (5’-3’ exo-, NEB) and NEXTflex ChIP-seq barcodes (Bioo Scientific). Following elution of complexes from the Protein-A sepharose, crosslinks were reversed and barcoded libraries were amplified by PCR. The number of PCR cycles was determined empirically for each library. After amplification, library concentration was quantified using Qubit analysis and real time PCR.

text: mid logarithmic growth

text: pAMNFhapR

text: Vibrio cholerae

text: Vibrio cholerae

text: nucleoid

text: Vibrio cholerae

characteristic: scientific name

characteristic: strain

text: HapR N-terminal 3xFLAG sample A


name: E-MTAB-11906:HapR N-terminal 3xFLAG sample B

text: School of Biosciences, University of Birmingham

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

characteristic: description

text: mid logarithmic growth

characteristic: developmental stage

text: pAMNFhapR

text: Vibrio cholerae

text: Vibrio cholerae

text: nucleoid

text: Vibrio cholerae

text: HapR N-terminal 3xFLAG sample B

characteristic: title


name: E-MTAB-11906:LuxO C-terminal 3xFLAG sample A

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: mid logarithmic growth

text: pAMCFluxO

characteristic: genotype

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

text: nucleoid

text: Vibrio cholerae

text: LuxO C-terminal 3xFLAG sample A


name: E-MTAB-11906:LuxO C-terminal 3xFLAG sample B

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: mid logarithmic growth

text: pAMCFluxO

text: Vibrio cholerae

text: Vibrio cholerae

text: nucleoid

characteristic: organism part

text: Vibrio cholerae

text: LuxO C-terminal 3xFLAG sample B


name: E-MTAB-11906:Negative control (empty pAMCF plasmid)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: mid logarithmic growth

text: pAMCF

text: Vibrio cholerae

text: Vibrio cholerae

text: nucleoid

text: Vibrio cholerae

text: Negative control (empty pAMCF plasmid)


name: E-MTAB-11906:Negative control (empty pAMNF plasmid)

text: public

characteristic: Submitter Id

text: ArrayExpress

text: mid logarithmic growth

text: pAMNF

text: Vibrio cholerae

text: Vibrio cholerae

text: nucleoid

text: Vibrio cholerae

characteristic: scientific name

characteristic: strain

text: Negative control (empty pAMNF plasmid)


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Latvian Biomedical Research and Study Centre

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: All patients had elevated levels of PSA (2.5 -50 ng/ml) at the time of diagnosis. Patient exclusion criteria included: blood transfusion in the last six months, another oncological disease, urinary tract infection and use of long-term urinary catheter. Sixty ml of the first morning urine were collected, centrifuged at 2000g for 15 min at room temperature, aliquoted and stored at -80ºC. Blood samples were collected in EDTA-coated tubes and processed at room temperature within 2 hours. Plasma samples were centrifuged twice at 3000g for 10 min, aliquoted and stored at -80°C. Samples were collected at two different time points: before radical prostatectomy (Pre) and 3 months after the surgery (Post). Tumor and normal prostate tissue samples were macroscopically dissected immediately after the surgery by experienced uropathologist. One slice of the tissue specimens was subjected to histological evaluation in order to verify the presence or absence of tumor cells in the tissue specimens and to assess the Gleason score in the given specimen, whereas the other part of the specimen was immediately placed into the RNALater solution (Thermo Fisher Scientific, USA) and stored at -20°C until processing. EVs were isolated from the plasma and urine samples using size exclusion chromatography (SEC) as described before (Endzeliņš et al., 2017) with some modifications. Briefly, the urine samples (20 ml) were thawed at +37˚C in a water bath and centrifuged at 10 000g for 15 min at + 4˚C to remove uromodulin and concentrated up to 500 µl using 100 kDa centrifugal filters (Merck Millipore, USA). The concentrated urine samples and 1 ml of plasma were loaded on Sepharose CL2B 10 ml columns. The eluate was collected in 12 sequential 0.5 ml fractions and each fraction was measured with Zetasizer Nano ZS (Malvern, UK). Fractions containing particles larger than 30 nm were combined and concentrated up to 100 μl using 3 kDa centrifugal filters (Merck Millipore, USA). EV samples were treated with Proteinase K (1mg/ml) (Thermo Fisher Scientific) for 60 min at 37°C followed by RNAse A (100 ng/μl) (Thermo Fisher Scientific) treatment for 15 min at 37°C. The purity, size distribution profile and concentration of EVs were assessed by transmission electron microscopy (TEM) and nanoparticle tracking analysis (NTA) using NanoSight NS500 instrument (Malvern, UK) as described before (Endzeliņš et al., 2017). Approximately 20 mg of tissues were homogenized using QIAzol Lysis Reagent (Qiagen, USA) and Lysing Matrix A tubes in a FastPrep-24 homogenizer (MP Biomedicals, USA). RNA was isolated using miRNeasy Micro Kit (Qiagen) following the small RNA enrichment protocol provided by the manufacturer, thus obtaining both, the long and small RNA fraction of each sample. From EVs, RNA was extracted using miRNeasy Micro Kit. On column DNAse treatment was performed according to the manufacturer’s instructions. RNA quantity and quality was assessed using Agilent pico RNA kit and Agilent 2100 Bioanalyzer (Agilent technologies, USA). EV-RNA libraries were constructed from half of the entire yield of extracted EV RNA without any size separation steps, whereas tissue small RNA libraries were constructed from 10 ng of tissue small RNA fraction using CleanTag® Small RNA Library Prep Kit (Trilink Biotechnologies, USA). The libraries were cleaned using Blue Pippin DNA Size Selection with 3% gel Blue Pippin Cassette (Sage Science, USA) setting target length to 130 - 250 bp. All libraries were constructed in duplicates. Transcriptome libraries were built in duplicates from 100 ng of long tissue RNA fraction using TruSeq Stranded mRNA library Prep (Illumina, USA) following manufacturer's instructions. Libraries were size-selected using Blue Pippin system with 2% gel Blue Pippin Cassette (Sage Science, USA) with a range of 200 - 600 bp and their quality and quantity was assessed using Agilent DNA kit (Agilent technologies, USA).

text: adult

text: prostate cancer

characteristic: disease

text: not available

characteristic: fraction

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: blood

characteristic: sampling site

text: not available

characteristic: sampling time point

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Latvian Biomedical Research and Study Centre

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: prostate cancer

text: not available

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

characteristic: organism part

text: blood

text: not available

text: Homo sapiens

text: male

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: prostate cancer

text: extracellular vesicular exosom

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: blood

text: post operation

text: Homo sapiens

characteristic: scientific name

text: male


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: prostate cancer

characteristic: disease

text: extracellular vesicular exosom

characteristic: fraction

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: blood

characteristic: sampling site

text: pre operation

characteristic: sampling time point

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: prostate cancer

text: extracellular vesicular exosom

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: neoplasm

text: taken during operation

text: Homo sapiens

text: male

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: prostate cancer

text: extracellular vesicular exosom

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue adjacent to neoplasm

text: taken during operation

text: Homo sapiens

characteristic: scientific name

text: male


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: prostate cancer

characteristic: disease

text: whole tissue

characteristic: fraction

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

characteristic: sampling site

text: taken during operation

characteristic: sampling time point

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: prostate cancer

text: whole tissue

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: normal tissue adjacent to neoplasm

text: taken during operation

text: Homo sapiens

text: male

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: prostate cancer

text: not available

text: Homo sapiens

text: Homo sapiens

text: urine

text: urine

text: not available

text: Homo sapiens

characteristic: scientific name

text: male


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: prostate cancer

characteristic: disease

text: extracellular vesicular exosom

characteristic: fraction

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: urine

text: urine

characteristic: sampling site

text: post operation

characteristic: sampling time point

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: prostate cancer

text: extracellular vesicular exosom

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: urine

characteristic: organism part

text: urine

text: pre operation

text: Homo sapiens

text: male

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: uncultured microorganism

text: uncultured microorganism

text: uncultured microorganism

characteristic: scientific name


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


AMEN

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: AMEN

tag: Namespace:FUNCTIONAL GENOMICS CENTER ZURICH

text: AMEN

characteristic: description

text: Brassica incana

text: Brassica incana

text: AMEN


ANAC

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: ANAC

text: ANAC

text: Brassica incana

characteristic: organism

text: Brassica incana

text: ANAC

characteristic: title


ATRA

text: FUNCTIONAL GENOMICS CENTER ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ATRA

text: ATRA

text: Brassica incana

text: Brassica incana

text: ATRA


CAMA

text: FUNCTIONAL GENOMICS CENTER ZURICH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CAMA

text: CAMA

text: Brassica incana

text: Brassica incana

text: CAMA


CAPR

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

characteristic: SRA accession

text: CAPR

characteristic: Submitter Id

text: CAPR

text: Brassica incana

text: Brassica incana

text: CAPR


CAST

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: CAST

text: CAST

text: Brassica incana

text: Brassica incana

characteristic: scientific name

text: CAST


CETA

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: CETA

text: CETA

text: Brassica incana

text: Brassica incana

text: CETA


CHIU

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: CHIU

text: CHIU

text: Brassica incana

text: Brassica incana

text: CHIU


COLL

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: COLL

text: COLL

text: Brassica incana

text: Brassica incana

text: COLL


CORO

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: CORO

text: CORO

text: Brassica incana

text: Brassica incana

text: CORO


CUMA

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: CUMA

text: CUMA

text: Brassica incana

text: Brassica incana

text: CUMA


DEI

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: DEI

text: DEI

text: Brassica incana

text: Brassica incana

text: DEI


EPOM

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: EPOM

text: EPOM

text: Brassica incana

text: Brassica incana

text: EPOM


FURO

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: FURO

text: FURO

text: Brassica incana

text: Brassica incana

text: FURO


MAGL

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: MAGL

text: MAGL

text: Brassica incana

text: Brassica incana

text: MAGL


MARA

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: MARA

text: MARA

text: Brassica incana

text: Brassica incana

text: MARA


PALI

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: PALI

text: PALI

text: Brassica incana

text: Brassica incana

text: PALI


POTE

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: POTE

text: POTE

text: Brassica incana

text: Brassica incana

text: POTE


PROC

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: PROC

text: PROC

text: Brassica incana

text: Brassica incana

text: PROC


SACC

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: SACC

text: SACC

text: Brassica incana

text: Brassica incana

text: SACC


SERI

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: SERI

text: SERI

text: Brassica incana

text: Brassica incana

text: SERI


CAPR-ref

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: CAPR-ref

text: CAPR-ref

text: Brassica incana

text: Brassica incana

text: CAPR-ref


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 5%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 10%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 12%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 15%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 18%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 20%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 25%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin no, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin no, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin yes, Posidonia 0.1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin yes, Posidonia 0.1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin no, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin no, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin yes, Posidonia 1%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin yes, Posidonia 1%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin no, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin no, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin yes, Posidonia 10%, duplicate 1

text: enrichment culture

text: enrichment culture


text: IMEDEA

text: public

text: 16S rRNA sequence from sediments of S'Avall, salinity 30%, ampicillin yes, Posidonia 10%, duplicate 2

text: enrichment culture

text: enrichment culture


S

text: IMEDEA

text: public

text: S

text: 16S rRNA sequence of slurry from sediments of S'Avall

text: enrichment culture

text: enrichment culture


Young Leaves R2

text: Weizmann Institute of Science

text: public

text: Young Leaves R2

tag: Namespace:Weizmann Institute of Science

text: not collected

characteristic: collection date

text: Fresh frozen young leaves

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Young Leaves R2


Young Leaves R3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Young Leaves R3

text: not collected

text: Fresh frozen young leaves

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Young Leaves R3

characteristic: title


Old Leaves R1

text: Weizmann Institute of Science

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Old Leaves R1

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Fresh frozen young leaves

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

characteristic: scientific name

text: Heli Old Leaves R1


Old Leaves R2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

text: public

text: Old Leaves R2

text: not collected

text: Fresh frozen young leaves

text: South Africa

text: not collected

text: not collected

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Old Leaves R2


Old Leaves R3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Old Leaves R3

text: not collected

text: Fresh frozen young leaves

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Old Leaves R3

characteristic: title


Flower receptacle R2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

text: public

characteristic: SRA accession

text: Flower receptacle R2

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Fresh frozen flower receptacle

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

characteristic: scientific name

text: Heli Flower receptacle R2


Flower receptacle R3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

text: public

text: Flower receptacle R3

text: not collected

text: Fresh frozen flower receptacle

text: South Africa

text: not collected

text: not collected

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Flower receptacle R3


Flower florets R1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Flower florets R1

text: not collected

text: Fresh frozen flower receptacle

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Flower florets R1

characteristic: title


Flower florets R2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

text: public

characteristic: SRA accession

text: Flower florets R2

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Fresh frozen flower receptacle

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

characteristic: scientific name

text: Heli Flower florets R2


Flower florets R3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

text: public

text: Flower florets R3

text: not collected

text: Fresh frozen flower receptacle

text: South Africa

text: not collected

text: not collected

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Flower florets R3


Roots R1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Roots R1

text: not collected

text: Fresh frozen thin roots

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Roots R1

characteristic: title


Roots R2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

text: public

characteristic: SRA accession

text: Roots R2

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Fresh frozen thin roots

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

characteristic: scientific name

text: Heli Roots R2


Roots R3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

text: public

text: Roots R3

text: not collected

text: Fresh frozen thin roots

text: South Africa

text: not collected

text: not collected

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Roots R3


Stems R1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Stems R1

text: not collected

text: Fresh frozen stems

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Stems R1

characteristic: title


Stems R2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

text: public

characteristic: SRA accession

text: Stems R2

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Fresh frozen stems

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

characteristic: scientific name

text: Heli Stems R2


Stems R3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

text: public

text: Stems R3

text: not collected

text: Fresh frozen stems

text: South Africa

text: not collected

text: not collected

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Stems R3


Trichomes R1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Trichomes R1

text: not collected

text: Frozen trichomes enriched by abrasion and filtration

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Trichomes R1

characteristic: title


Trichomes R2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

text: public

characteristic: SRA accession

text: Trichomes R2

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

characteristic: scientific name

text: Heli Trichomes R2


Trichomes R3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

text: public

text: Trichomes R3

text: not collected

text: South Africa

text: not collected

text: not collected

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Trichomes R3


Young Leaves Trueseq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Young Leaves Trueseq

text: not collected

text: Fresh frozen young leaves

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Young Leaves Trueseq

characteristic: title


Old Leaves Trueseq

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

text: public

characteristic: SRA accession

text: Old Leaves Trueseq

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Fresh frozen Old leaves

text: South Africa

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

characteristic: scientific name

text: Heli Old Leaves Trueseq


Stems Trueseq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Weizmann Institute of Science

text: public

text: Stems Trueseq

text: not collected

text: Fresh frozen Stems

text: South Africa

text: not collected

text: not collected

text: glasshouse

characteristic: growth facility

text: not collected

characteristic: isolation and growth condition

text: Helichrysum umbraculigerum

text: Mature plant, vegetative state

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Herb

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Helichrysum umbraculigerum

text: Heli Stems Trueseq


Roots Trueseq

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Weizmann Institute of Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Roots Trueseq

text: not collected

text: Fresh frozen Roots

characteristic: description

text: South Africa

text: not collected

text: not collected

text: glasshouse

text: not collected

text: Helichrysum umbraculigerum

characteristic: organism

text: Mature plant, vegetative state

text: Soil

text: Herb

text: healthy

text: Helichrysum umbraculigerum

text: Heli Roots Trueseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PERIO-UKM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human oral metagenome

text: human oral metagenome

characteristic: scientific name

text: human oral metataxonomics


GasAcuGyn

text: Queen Mary University of London

text: public

text: GasAcuGyn

tag: Namespace:Queen Mary University of London

text: three-spined stickleback

characteristic: common name

text: Gynogenetic Gasterosteus aculeatus sample used to assemble and polish genome

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: female

characteristic: sex

text: Gynogenetic Gasterosteus aculeatus


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

characteristic: adapters

characteristic: collection date

text: chicken

text: Chicken meta genome data from Ileum mucosa; animal CA01.10 from cage CA01 with treatment CC

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Ileum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Campylobacter:-;Salmonella:-;Clostridium:-

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

unit: °C

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

unit: g

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

unit: day

characteristic: trial length

characteristic: trial timepoint

type: EXTERNAL LINKS

type: BIOGENIC AMINES

type: SAMPLE

value: Body site

value: ileum mucosa

value: Project

value: HoloFood

value: Experiment

value: transcriptomics

value: Organism

value: Chicken

value: Sample code

type: TRIAL

value: Trial start

value: Trial description


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CA01.10 from cage CA01 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title

value: caecum mucosa

value: Trial code


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CA03.14 from cage CA03 with treatment CO

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: CA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CA03.14 from cage CA03 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title

value: Trial 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CA04.03 from cage CA04 with treatment CC

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Control

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CA04.03 from cage CA04 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CA05.08 from cage CA05 with treatment CE

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

text: female

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint

value: Trial end


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CA05.08 from cage CA05 with treatment CE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Prebiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Ileum mucosa; animal CA06.05 from cage CA06 with treatment CO

characteristic: description

text: Spain

text: El Morell; Tarragona

text: Ileum mucosa

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host taxid

characteristic: host total mass

text: BEMT

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Gallus gallus

text: HoloFood

characteristic: project

text: HoloFood Chicken - Host Transcriptome

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Gallus gallus

text: Illumiva Novaseq 6000

characteristic: sequencing method

characteristic: trial length

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: chicken

characteristic: common name

text: Chicken meta genome data from Caecum mucosa; animal CA06.05 from cage CA06 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum mucosa

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

characteristic: host disease status

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

text: BEMT

text: PCR

text: D-rex protocol

text: Gallus gallus

characteristic: organism

text: HoloFood

text: HoloFood Chicken - Host Transcriptome

text: Shield

text: E-matrix 2ml

text: UCPH

text: Gallus gallus

characteristic: scientific name

text: Illumiva Novaseq 6000

characteristic: title