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characteristic: SRA accession

characteristic: Submitter Id

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA10.29 from tank SA10 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Jaguar SA Seaweed 2%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Jaguar

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Lab Process ID


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA10.30 from tank SA10 with treatment Jaguar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Fermented algae meal (added in in oil coating)

characteristic: host diet

text: Jaguar SA Seaweed 2%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Jaguar

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA11.12 from tank SA11 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA11.17 from tank SA11 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA11.20 from tank SA11 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA11.22 from tank SA11 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA11.23 from tank SA11 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Tiger SA Seaweed 0%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Tiger

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint

value: Omics

value: Metagenomics


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA11.27 from tank SA11 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: Tiger SA Seaweed 0%

characteristic: host diet treatment

characteristic: host diet treatment concentration

text: Wounded:-

characteristic: host disease status

characteristic: host gutted mass

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

characteristic: host storage container temperature

characteristic: host subject id

text: BEST

text: PCR

text: D-rex protocol

text: Salmo salar

characteristic: organism

text: HoloFood

text: Holofood Salmon 16S amplicon sequencing

text: Shield

text: 2ml E-matrix

text: UCPH

text: Salmo salar

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Salmon 16S amplicon sequencing data from Distal gut content; animal SA12.02 from tank SA12 with treatment Cougar

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Dønna; Nordland county

text: Distal gut content

text: Atlantic salmon

text: Cougar SA Seaweed 1.5%

text: Wounded:-

text: Salmo salar

text: LetSea Tank: Cougar

characteristic: host taxid

characteristic: host total mass

text: BEST

characteristic: library name

text: PCR

characteristic: library selection

text: D-rex protocol

characteristic: nucleic acid extraction

text: Salmo salar

text: HoloFood

characteristic: project

text: Holofood Salmon 16S amplicon sequencing

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: Salmo salar

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

characteristic: trial timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIPH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: S. pyogenes

characteristic: common name

text: GAS routine sample

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIPH

text: public

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: biopsy

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CFGM

characteristic: INSDC center name

text: public

characteristic: animalnumber

characteristic: cagenumber

text: metagenome

characteristic: pathogen

text: metagenome

text: MiSeq

text: f

characteristic: sex

text: healthy

characteristic: status


text: CFGM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: 10^7 cfu

text: metagenome

text: Streptococcus pneumoniae 19F

text: metagenome

text: MiSeq

text: f

text: colonized


characteristic: ENA-CHECKLIST

text: CFGM

text: public

text: 10^8 cfu

text: metagenome

characteristic: organism

text: Streptococcus pneumoniae 19F

text: metagenome

text: MiSeq

text: f

text: infected


characteristic: ENA-FIRST-PUBLIC

text: CFGM

text: public

text: 100000 pfu

text: metagenome

text: Influenza virus A/Bavaria/74/2009

text: metagenome

text: MiSeq

text: f

text: infected

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OXFORD

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: University of Oxford

characteristic: collecting institution

characteristic: collection date

text: Modernising Medical Microbiology

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

text: not collected

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Influenza A virus

text: Influenza A virus

text: Influenza genome sequencing


characteristic: ENA-CHECKLIST

text: OX

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

text: Streptococcus agalactiae

text: Streptococcus agalactiae


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OX

text: public

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

characteristic: title


text: OX

text: public

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: OX

text: public

text: Streptococcus dysgalactiae

text: Streptococcus dysgalactiae


text: OX

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: OX

text: public

text: Streptococcus oralis

text: Streptococcus oralis


text: OX

text: public

text: Streptococcus infantis

text: Streptococcus infantis


text: OX

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: Haemophilus influenzae

text: Haemophilus influenzae


text: OX

text: public

text: Haemophilus haemolyticus

text: Haemophilus haemolyticus


text: OX

text: public

text: Aggregatibacter segnis

text: Aggregatibacter segnis


text: OX

text: public

text: Neisseria mucosa

text: Neisseria mucosa


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: ROGER VILA

text: University of Edinburgh

characteristic: collecting institution

characteristic: collection date

text: Amanda's blue

characteristic: common name

unit: m

characteristic: elevation

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Catalonia | Girona | Meranges

characteristic: geographic location (region and locality)

text: High mountain pasture grassland

characteristic: habitat

text: Roger Vila

text: Institut de Biologia Evolutiva

text: adult

characteristic: lifestage

text: Polyommatus amandus

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Polyommatus amandus

text: MALE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ROGER VILA

text: University of Edinburgh

text: Amanda's blue

text: Spain

text: Catalonia | Girona | Meranges

text: High mountain pasture grassland

text: Roger Vila

text: Institut de Biologia Evolutiva

text: adult

text: Polyommatus amandus

characteristic: organism

text: WHOLE ORGANISM

characteristic: sample same as

text: Polyommatus amandus

text: MALE

text: NOT PROVIDED

text: N

characteristic: title


text: Department of Hematology Erasmus MC

text: public

tag: Namespace:Department of Hematology  Erasmus MC

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: house mouse

characteristic: common name

text: Protocols: For bone marrow stromal cells two femurs and two tibias from each mouse were used. The ends of cleaned bones were cut off and marrow was flushed out. The remaining bone was cut into small pieces and gently crushed with a mortar and pestle. Bone fragments were filtered through a 100 um cell strainer and then digested for 45 minutes at 37C with 0.25% Collagenase Type I (Stem Cell). Bone chips were again washed on a 100 um cell strainer and stromal cells were collected into PBS containing 1% FCS and 1 mM EDTA. Erythrocytes were lysed and cells were counted. For bone marrow immune cells 1 femur and 2 tibias from each mouse were used. After isolating and cleaning the bones, one end was cut off and bones were placed into a 0.5 ml microcentrifuge tube with a hole punched in the bottom. This was nested into a 1.5 ml microcentrifuge tube and spun down at 10,000 RPM for 15 seconds to collect the bone marrow. Following resuspension in PBS containing 1% FCS and 1 mM EDTA, erythrocytes were lysed. Remaining cells were washed with PBS containing 2% FCS, filtered through a 100 um cell strainer and counted. For all flow cytometry and FACS experiments, Fc-receptors were blocked with 10% normal mouse serum and anti-CD16/32 (BD, clone 2.4G2) prior to incubation with the following antibodies: CD3e-PerCpCy5.5 (eBioscience, clone 145-2C11), CD8-FITC (BD, clone 53-6.7), CD11b-APCeFluor780 (eBioscience, clone M1/70), CD19-AF700 (eBioscience, clone eBio1D3), CD27-BV510 (Biolegend, clone LG.3A10), CD31-PE/CF594 (BD, clone MEC13.3), CD44-BV510 (Biolegend, clone IM7), CD45-APC/Cy7 (eBioscience, clone 30-F11), CD51-PE (eBioscience, clone RMY-7), CD69-AF647 (Biolegend, clone H1.2F3), Biotinylated CD71 (Biolegend, clone R17217), NKp46-PE-Cy7 (eBioscience, clone 29A1.4), Gr1-APC (BD, clone RB6-8C5), Ly6c-BV510 (Biolegend, clone HK1.4), Sca-1-PerCP/Cy5.5 (Invitrogen, clone D7), Ter119-BV510 (Biolegend, clone TER-119), Streptavidin-PE/Cy7 (Biolegend). Samples were incubated for 25 minutes on ice in the dark. Following staining, cells were washed and resuspended in PBS + 2% FCS containing DAPI, and sorted with a BD FACS Aria III. RNA was extracted using the NucleoSpin RNA XS kit (Machery‐Nagel). cDNA was prepared using SMARTer Ultra Low RNA kit (Clontech Laboratories) for Illumina Sequencing according the manufacturer’s protocol. The quality and quantity of cDNA samples was verified using the Agilent 2100 Bio-Analyzer and the High Sensitivity DNA kit. cDNA Libraries were generated using the TruSeq Sample Preparation v.2 Guide (Illumina).

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: bone marrow cell

characteristic: organism part

text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Hematology Erasmus MC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: stromal cell

text: house mouse

text: adult

text: multiple myeloma

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow cell

text: Mus musculus

text: female

characteristic: sex


text: Department of Hematology Erasmus MC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: cytotoxic T cell

text: house mouse

text: adult

text: multiple myeloma

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow cell

text: Mus musculus

text: female

characteristic: title


text: Department of Hematology Erasmus MC

text: public

text: ArrayExpress

text: natural killer cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: multiple myeloma

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: bone marrow cell

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Hematology Erasmus MC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: cytotoxic T cell

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow cell

text: Mus musculus

text: female

characteristic: strain


text: Department of Hematology Erasmus MC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: natural killer cell

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow cell

text: Mus musculus

text: female

characteristic: sex


text: public

tag: Namespace:Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Ibadan

text: Ghana

characteristic: geographic location (country and/or sea)

text: Kumasi

characteristic: geographic location (region and locality)

text: Staphylococcus aureus

characteristic: isolate

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: Bacterial genome

characteristic: title


characteristic: Age

text: Bacteriome

characteristic: Assay

characteristic: BMI

text: HFD

characteristic: Diet

text: Healthy

characteristic: Disease

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Female

characteristic: Gender

text: University of Lubeck

text: public

tag: Namespace:University of Lubeck

characteristic: Weight

text: human

characteristic: common name

characteristic: description

text: microbiome

characteristic: environmental package

text: Homo sapiens

text: Homo sapiens

text: MiSeq

characteristic: sequencing method


text: Bacteriome

text: HFD

text: Healthy

characteristic: External Id

text: Male

text: University of Lubeck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


characteristic: Age

text: Bacteriome

characteristic: Assay

characteristic: BMI

text: LFD

characteristic: Diet

text: Healthy

characteristic: Disease

text: Male

text: University of Lubeck

text: public

text: human

text: microbiome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: MiSeq

characteristic: title


text: Bacteriome

text: LFD

text: Healthy

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Female

characteristic: Gender

text: University of Lubeck

text: public

characteristic: Weight

text: human

characteristic: common name

characteristic: description

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


text: Bacteriome

text: HFD

text: DM II

characteristic: External Id

text: Female

text: University of Lubeck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: microbiome

characteristic: environmental package

text: Homo sapiens

text: Homo sapiens

text: MiSeq

characteristic: sequencing method


characteristic: Age

text: Bacteriome

characteristic: Assay

characteristic: BMI

text: LFD

characteristic: Diet

text: DM II

characteristic: Disease

text: Male

text: University of Lubeck

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


text: Bacteriome

text: LFD

text: DM II

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Female

characteristic: Gender

text: University of Lubeck

text: public

characteristic: Weight

text: human

text: microbiome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: MiSeq

characteristic: title


text: Bacteriome

text: HFD

text: DM II

characteristic: External Id

text: Male

text: University of Lubeck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

characteristic: common name

characteristic: description

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


characteristic: Age

text: Mycobiome

characteristic: Assay

characteristic: BMI

text: HFD

characteristic: Diet

text: Healthy

characteristic: Disease

text: Female

text: University of Lubeck

text: public

text: human

text: microbiome

characteristic: environmental package

text: Homo sapiens

text: Homo sapiens

text: MiSeq

characteristic: sequencing method


text: Mycobiome

text: HFD

text: Healthy

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Male

characteristic: Gender

text: University of Lubeck

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: Weight

text: human

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


text: Mycobiome

text: LFD

text: Healthy

characteristic: External Id

text: Male

text: University of Lubeck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: microbiome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: MiSeq

characteristic: title


characteristic: Age

text: Mycobiome

characteristic: Assay

characteristic: BMI

text: LFD

characteristic: Diet

text: Healthy

characteristic: Disease

text: Female

text: University of Lubeck

text: public

text: human

characteristic: common name

characteristic: description

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


text: Mycobiome

text: HFD

text: DM II

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Female

characteristic: Gender

text: University of Lubeck

text: public

characteristic: SRA accession

text: human

text: microbiome

characteristic: environmental package

text: Homo sapiens

text: Homo sapiens

text: MiSeq

characteristic: sequencing method


text: Mycobiome

text: LFD

text: DM II

characteristic: External Id

text: Male

text: University of Lubeck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: Weight

text: human

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


characteristic: Age

text: Mycobiome

characteristic: Assay

characteristic: BMI

text: LFD

characteristic: Diet

text: DM II

characteristic: Disease

text: Female

text: University of Lubeck

text: public

text: human

text: microbiome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: MiSeq

characteristic: title


text: Mycobiome

text: HFD

text: DM II

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Male

characteristic: Gender

text: University of Lubeck

text: public

characteristic: SRA accession

text: human

characteristic: common name

characteristic: description

text: microbiome

text: Homo sapiens

text: Homo sapiens

text: MiSeq


characteristic: External Id

text: STATENS SERUM INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:STATENS SERUM INSTITUT

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Ibadan

text: public

characteristic: Submitter Id

text: Ghana

characteristic: geographic location (country and/or sea)

text: Tamale

characteristic: geographic location (region and locality)

text: Proteus mirabilis

characteristic: isolate

text: Proteus mirabilis

text: Proteus mirabilis

text: Bacterial genome


text: public

text: Ghana

text: Tamale

text: Salmonella enterica

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Bacterial genome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Ghana

text: Sheshegu-Tamale

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: Bacterial genome


characteristic: ENA-LAST-UPDATE

text: D-BSSE, ETH ZURICH

text: public

tag: Namespace:D-BSSE, ETH ZURICH

text: ArrayExpress

characteristic: broker name

text: retinal cell

text: human

text: Protocols: Retinal organoids were dissociated with the papain-based dissociation kit (Miltenyi Biotec, 130-092-628) described previously, and GFP+ cells were enriched by fluorescence activated cell sorting (FACS) The retinal organoids were generated with 1500 iPS cells per micro-well and treated with BMP4 (55ng/ml, Biotechne #314-BP) on day 6 with half medium change on day 9, 12 and 15. Retinal organoids derived from 409B2-iCas9 line at 19 weeks of development were infected with the lentiviral pool described above. 20 organoids were individually infected in ultra-low attachment 96 well plates (Costar). Each organoid was infected with 1ul of LV (titer = 5.61E+08 TU/ml) in 100ul medium. After 4hrs, 150 ul of medium were added for O/N incubation. The day after, organoids were moved to 10cm plates and treated with doxycycline 4ug/ml for 1 week to induce Cas9. After three weeks, 10 organoids were dissociated with the papain-based dissociation kit (Miltenyi Biotec, 130-092-628) described previously, and GFP+ cells were enriched by fluorescence activated cell sorting (FACS), (RO_CROP_Exp1). The other 10 organoids were processed five weeks after infection (RO_CROP_Exp2). Single cell RNA-seq libraries were generated with the Chromium Single Cell 3’ V3.1 Library & Gel Bead Kit. Single cell RNA-seq libraries were generated with the Chromium Single Cell 3’ V3.1 Library & Gel Bead Kit. In addition, guide RNA sequences from single cells were amplified from 30ng of scRNA-seq cDNA as described before. In brief, The first PCR amplifies a broad region targeting the outer part of the U6 promoter. The second, nested, PCR targets the inner portion of the U6 promoter adjacent to the guide sequence and adds a TruSeq Illumina i5 adapter. Finally, a third PCR adds Illumina sequencing i7 adaptors. PCRs were monitored by qPCR to avoid over-amplification. The samples were purified using SPRI beads (Beckman Coulter).

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: mixed lentiviral pool against OTX2, NRL, CRX, VSX2, and PAX6

characteristic: genotype

text: retinal organoid

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: External Id

text: D-BSSE, ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: retinal cell

text: human

characteristic: common name

characteristic: description

text: embryo

text: normal

text: mixed lentiviral pool against OTX2, NRL, CRX, VSX2, and PAX6 with guideRNA

text: retinal organoid

text: Homo sapiens

text: Homo sapiens

text: skin

text: induced pluripotent stem cell

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

text: Ghana

characteristic: geographic location (country and/or sea)

text: Tamale Central

characteristic: geographic location (region and locality)

text: Salmonella enterica

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Bacterial genome

characteristic: title


characteristic: ENA-LAST-UPDATE

text: KTH, SCIENCE FOR LIFE LABORATORY

text: public

tag: Namespace:KTH, SCIENCE FOR LIFE LABORATORY

text: whole cell

text: Rui Miao

text: Synechocystis

text: PCR amplified barcode

text: bioreactor sample

text: Synechocystis sp. PCC 6803

text: Synechocystis sp. PCC 6803

text: Synechocystis CRISPRi library 2.0


characteristic: External Id

text: KTH, SCIENCE FOR LIFE LABORATORY

text: public

text: whole cell

text: Rui Miao

text: Synechocystis

text: PCR amplified barcode

text: Synechocystis sp. PCC 6803

text: Synechocystis sp. PCC 6803

text: Synechocystis CRISPRi library 2.0


text: Maria Kostakou

characteristic: INSDC center name

text: public

tag: Namespace:Maria Kostakou

text: aquatic

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Artemia - Replicate 1)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

text: In depth comparative microbiome analysis of Mediterranean fish hatcheries

characteristic: project name

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Artemia - Replicate 2)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

characteristic: INSDC center name

text: public

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Artemia - Replicate 3)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


text: Maria Kostakou

text: public

text: aquatic

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Algae - Replicate 1)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Algae - Replicate 2)

text: liquid water

text: Greece

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Algae - Replicate 3)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


text: Maria Kostakou

characteristic: INSDC center name

text: public

text: aquatic

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Inlet water - Replicate 1)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

text: public

text: aquatic

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Inlet water - Replicate 2)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Inlet water - Replicate 3)

text: liquid water

text: Greece

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome


text: Maria Kostakou

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

characteristic: broad-scale environmental context

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Outlet water - Replicate 1)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

text: public

text: aquatic

characteristic: collection date

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Outlet water - Replicate 2)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

text: public

text: aquatic

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Outlet water - Replicate 3)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


text: Maria Kostakou

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Rotifer - Replicate 1)

text: liquid water

text: Greece

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

characteristic: broad-scale environmental context

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Rotifer - Replicate 2)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

text: public

text: aquatic

characteristic: collection date

text: Sample from Hatchery A (commercial hatchery with borehole water) from spring 2019 (Rotifer - Replicate 3)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


text: Maria Kostakou

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquatic

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Artemia - Replicate 1)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Artemia - Replicate 2)

text: liquid water

text: Greece

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

characteristic: broad-scale environmental context

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Artemia - Replicate 3)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: In depth comparative microbiome analysis of Mediterranean fish hatcheries

text: aquaculture metagenome


text: Maria Kostakou

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquatic

characteristic: collection date

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Algae - Replicate 1)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

text: public

text: aquatic

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Algae - Replicate 2)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Algae - Replicate 3)

text: liquid water

text: Greece

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome


text: Maria Kostakou

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

characteristic: broad-scale environmental context

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Inlet water - Replicate 1)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

text: public

text: aquatic

characteristic: collection date

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Inlet water - Replicate 2)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

text: public

text: aquatic

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Inlet water - Replicate 3)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


text: Maria Kostakou

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Outlet water - Replicate 1)

text: liquid water

text: Greece

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

characteristic: broad-scale environmental context

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Outlet water - Replicate 2)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

text: public

text: aquatic

characteristic: collection date

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Outlet water - Replicate 3)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


text: Maria Kostakou

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquatic

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Rotifer - Replicate 1)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Rotifer - Replicate 2)

text: liquid water

text: Greece

text: animal aquaculture process

characteristic: local environmental context

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maria Kostakou

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic

characteristic: broad-scale environmental context

text: Sample from Hatchery A (commercial hatchery with borehole water) from autumn 2019 (Rotifer - Replicate 3)

characteristic: description

text: liquid water

text: Greece

text: animal aquaculture process

text: aquaculture metagenome

text: aquaculture metagenome


text: Maria Kostakou

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquatic

characteristic: collection date

text: Sample from Hatchery A (commercial hatchery with borehole water) from winter 2020 (Artemia - Replicate 1)

text: liquid water

text: Greece

characteristic: geographic location (country and/or sea)

text: animal aquaculture process

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Maria Kostakou

text: public

text: aquatic

characteristic: depth

text: Sample from Hatchery A (commercial hatchery with borehole water) from winter 2020 (Artemia - Replicate 2)

text: liquid water

characteristic: environmental medium

text: Greece

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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