E-MTAB-12582:hESCs BLM-/- 20

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 20

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM-/- 20


E-MTAB-12582:hESCs BLM-/- 21

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM-/- 21

tag: Namespace:UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: Protocols: We used cell line WIBR3 (RRID:CVCL_9767), and human embryonic stem cells (hESCs) were collected after BrdU pulse and resuspended in nuclei staining buffer (100 mM Tris-HCl pH 7.4, 150 mM NaCl, 1 mM CaCl2, 0.5 mM MgCl2, 0.1% NP-40, and 2% bovine serum albumin [Sigma-Aldrich] supplemented with 10 μg/mL Hoechst 33258 [Enzo] and 10 μg/mL propidium iodide [Sigma-Aldrich]. Single nuclei were sorted into 5 μL ProFreeze-CDM freeze medium [Lonza] + 7.5% dimethyl sulfoxide in 96-well skirted PCR plates [4titude], based on low propidium iodide (G1 phase) and low Hoechst (BrdU-induced quenching) fluorescence using an Influx cell sorter [BD Biosciences]. Strand-seq libraries were prepared using an Agilent Bravo liquid handling platform as described before (Sanders et al., 2017). For each experiment, 96 libraries were pooled and 250-450 bp-sized fragments were isolated and purified. DNA quality and concentrations were assessed using the High Sensitivity dsDNA kit [Agilent] on the Agilent 2100 Bio-Analyzer and on a Qubit 2.0 Fluorometer [Life Technologies] resp. Please refer to: doi: 10.1038/nprot.2017.029

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, BLM-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM-/- 21

characteristic: title


E-MTAB-12582:hESCs BLM-/- 22

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 22

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM-/- 22


E-MTAB-12582:hESCs BLM-/- 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 23

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 23


E-MTAB-12582:hESCs BLM-/- 24

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM-/- 24

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 24


E-MTAB-12582:hESCs BLM-/- 25

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM-/- 25

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 25


E-MTAB-12582:hESCs BLM-/- 26

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 26

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM-/- 26

characteristic: title


E-MTAB-12582:hESCs BLM-/- 27

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 27

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM-/- 27


E-MTAB-12582:hESCs BLM-/- 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 28

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 28


E-MTAB-12582:hESCs BLM-/- 29

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM-/- 29

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 29


E-MTAB-12582:hESCs BLM-/- 30

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM-/- 30

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 30


E-MTAB-12582:hESCs BLM-/- 31

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 31

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM-/- 31

characteristic: title


E-MTAB-12582:hESCs BLM-/- 32

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 32

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM-/- 32


E-MTAB-12582:hESCs BLM-/- 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 33

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 33


E-MTAB-12582:hESCs BLM-/- 34

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM-/- 34

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 34


E-MTAB-12582:hESCs BLM-/- 35

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM-/- 35

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 35


E-MTAB-12582:hESCs BLM-/- 36

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 36

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM-/- 36

characteristic: title


E-MTAB-12582:hESCs BLM-/- 37

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 37

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM-/- 37


E-MTAB-12582:hESCs BLM-/- 38

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 38

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 38


E-MTAB-12582:hESCs BLM-/- 39

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM-/- 39

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 39


E-MTAB-12582:hESCs BLM-/- 40

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM-/- 40

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 40


E-MTAB-12582:hESCs BLM-/- 41

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 41

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM-/- 41

characteristic: title


E-MTAB-12582:hESCs BLM-/- 42

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 42

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM-/- 42


E-MTAB-12582:hESCs BLM-/- 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM-/- 43

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, BLM-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM-/- 43


E-MTAB-12582:hESCs BLM+/+ 1

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 1

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 1


E-MTAB-12582:hESCs BLM+/+ 2

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 2

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 2


E-MTAB-12582:hESCs BLM+/+ 3

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 3

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 3

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 4

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 4

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 4


E-MTAB-12582:hESCs BLM+/+ 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 5

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 5


E-MTAB-12582:hESCs BLM+/+ 6

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 6

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 6


E-MTAB-12582:hESCs BLM+/+ 7

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 7

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 7


E-MTAB-12582:hESCs BLM+/+ 8

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 8

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 8

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 9

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 9

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 9


E-MTAB-12582:hESCs BLM+/+ 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 10

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 10


E-MTAB-12582:hESCs BLM+/+ 11

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 11

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 11


E-MTAB-12582:hESCs BLM+/+ 12

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 12

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 12


E-MTAB-12582:hESCs BLM+/+ 13

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 13

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 13

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 14

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 14

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 14


E-MTAB-12582:hESCs BLM+/+ 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 15

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 15


E-MTAB-12582:hESCs BLM+/+ 16

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 16

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 16


E-MTAB-12582:hESCs BLM+/+ 17

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 17

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 17


E-MTAB-12582:hESCs BLM+/+ 18

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 18

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 18

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 19

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 19

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 19


E-MTAB-12582:hESCs BLM+/+ 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 20

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 20


E-MTAB-12582:hESCs BLM+/+ 21

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 21

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 21


E-MTAB-12582:hESCs BLM+/+ 22

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 22

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 22


E-MTAB-12582:hESCs BLM+/+ 23

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 23

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 23

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 24

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 24

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 24


E-MTAB-12582:hESCs BLM+/+ 25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 25

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 25


E-MTAB-12582:hESCs BLM+/+ 26

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 26

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 26


E-MTAB-12582:hESCs BLM+/+ 27

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 27

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 27


E-MTAB-12582:hESCs BLM+/+ 28

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 28

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 28

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 29

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 29

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 29


E-MTAB-12582:hESCs BLM+/+ 30

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 30

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 30


E-MTAB-12582:hESCs BLM+/+ 31

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 31

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 31


E-MTAB-12582:hESCs BLM+/+ 32

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 32

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 32


E-MTAB-12582:hESCs BLM+/+ 33

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 33

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 33

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 34

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 34

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 34


E-MTAB-12582:hESCs BLM+/+ 35

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 35

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 35


E-MTAB-12582:hESCs BLM+/+ 36

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 36

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 36


E-MTAB-12582:hESCs BLM+/+ 37

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 37

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 37


E-MTAB-12582:hESCs BLM+/+ 38

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 38

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 38

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 39

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 39

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 39


E-MTAB-12582:hESCs BLM+/+ 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 40

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 40


E-MTAB-12582:hESCs BLM+/+ 41

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 41

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 41


E-MTAB-12582:hESCs BLM+/+ 42

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 42

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 42


E-MTAB-12582:hESCs BLM+/+ 43

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 43

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 43

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 44

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 44

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 44


E-MTAB-12582:hESCs BLM+/+ 45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 45

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 45


E-MTAB-12582:hESCs BLM+/+ 46

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 46

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 46


E-MTAB-12582:hESCs BLM+/+ 47

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 47

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 47


E-MTAB-12582:hESCs BLM+/+ 48

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 48

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 48

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 49

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 49

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 49


E-MTAB-12582:hESCs BLM+/+ 50

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 50

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 50


E-MTAB-12582:hESCs BLM+/+ 51

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 51

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 51


E-MTAB-12582:hESCs BLM+/+ 52

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 52

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 52


E-MTAB-12582:hESCs BLM+/+ 53

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 53

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 53

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 54

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 54

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 54


E-MTAB-12582:hESCs BLM+/+ 55

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 55

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 55


E-MTAB-12582:hESCs BLM+/+ 56

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 56

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 56


E-MTAB-12582:hESCs BLM+/+ 57

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs BLM+/+ 57

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 57


E-MTAB-12582:hESCs BLM+/+ 58

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 58

text: ArrayExpress

text: embryonic stem cell

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text: blastula stage

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characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs BLM+/+ 58

characteristic: title


E-MTAB-12582:hESCs BLM+/+ 59

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 59

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs BLM+/+ 59


E-MTAB-12582:hESCs BLM+/+ 60

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs BLM+/+ 60

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 60


E-MTAB-12582:hESCs BLM+/+ 61

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs BLM+/+ 61

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

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text: Homo sapiens

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text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs BLM+/+ 61


E-MTAB-12582:hESCs BLM+/+ 62

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

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E-MTAB-12582:hESCs BLM+/+ 63

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characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 1

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text: ArrayExpress

characteristic: broker name

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E-MTAB-12582:hESCs RTEL1-/- 2

characteristic: ENA-CHECKLIST

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E-MTAB-12582:hESCs RTEL1-/- 3

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

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E-MTAB-12582:hESCs RTEL1-/- 4

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E-MTAB-12582:hESCs RTEL1-/- 5

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characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 6

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E-MTAB-12582:hESCs RTEL1-/- 7

characteristic: ENA-CHECKLIST

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E-MTAB-12582:hESCs RTEL1-/- 8

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

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E-MTAB-12582:hESCs RTEL1-/- 9

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E-MTAB-12582:hESCs RTEL1-/- 10

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characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 11

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characteristic: phenotype

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E-MTAB-12582:hESCs RTEL1-/- 12

characteristic: ENA-CHECKLIST

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text: hESCs RTEL1-/- 12


E-MTAB-12582:hESCs RTEL1-/- 13

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E-MTAB-12582:hESCs RTEL1-/- 14

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E-MTAB-12582:hESCs RTEL1-/- 15

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characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 16

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E-MTAB-12582:hESCs RTEL1-/- 17

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E-MTAB-12582:hESCs RTEL1-/- 18

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text: hESCs RTEL1-/- 18


E-MTAB-12582:hESCs RTEL1-/- 19

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text: hESCs RTEL1-/- 19


E-MTAB-12582:hESCs RTEL1-/- 20

text: UNIVERSITY OF CALIFORNIA, BERKELEY

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characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 21

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E-MTAB-12582:hESCs RTEL1-/- 22

characteristic: ENA-CHECKLIST

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text: hESCs RTEL1-/- 22


E-MTAB-12582:hESCs RTEL1-/- 23

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text: hESCs RTEL1-/- 23


E-MTAB-12582:hESCs RTEL1-/- 24

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E-MTAB-12582:hESCs RTEL1-/- 25

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characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 26

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E-MTAB-12582:hESCs RTEL1-/- 27

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E-MTAB-12582:hESCs RTEL1-/- 28

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E-MTAB-12582:hESCs RTEL1-/- 29

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E-MTAB-12582:hESCs RTEL1-/- 30

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E-MTAB-12582:hESCs RTEL1-/- 31

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E-MTAB-12582:hESCs RTEL1-/- 32

characteristic: ENA-CHECKLIST

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E-MTAB-12582:hESCs RTEL1-/- 33

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E-MTAB-12582:hESCs RTEL1-/- 34

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E-MTAB-12582:hESCs RTEL1-/- 35

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E-MTAB-12582:hESCs RTEL1-/- 36

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E-MTAB-12582:hESCs RTEL1-/- 37

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E-MTAB-12582:hESCs RTEL1-/- 38

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E-MTAB-12582:hESCs RTEL1-/- 39

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E-MTAB-12582:hESCs RTEL1-/- 40

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text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs RTEL1-/- 40

characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 41

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 41

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 41


E-MTAB-12582:hESCs RTEL1-/- 42

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 42

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 42


E-MTAB-12582:hESCs RTEL1-/- 43

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs RTEL1-/- 43

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 43


E-MTAB-12582:hESCs RTEL1-/- 44

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs RTEL1-/- 44

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 44


E-MTAB-12582:hESCs RTEL1-/- 45

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 45

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs RTEL1-/- 45

characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 46

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 46

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 46


E-MTAB-12582:hESCs RTEL1-/- 47

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 47

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 47


E-MTAB-12582:hESCs RTEL1-/- 48

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs RTEL1-/- 48

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 48


E-MTAB-12582:hESCs RTEL1-/- 49

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs RTEL1-/- 49

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 49


E-MTAB-12582:hESCs RTEL1-/- 50

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 50

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs RTEL1-/- 50

characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 51

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 51

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 51


E-MTAB-12582:hESCs RTEL1-/- 52

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 52

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 52


E-MTAB-12582:hESCs RTEL1-/- 53

text: UNIVERSITY OF CALIFORNIA, BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12582:hESCs RTEL1-/- 53

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 53


E-MTAB-12582:hESCs RTEL1-/- 54

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

characteristic: SRA accession

text: E-MTAB-12582:hESCs RTEL1-/- 54

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 54


E-MTAB-12582:hESCs RTEL1-/- 55

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 55

text: ArrayExpress

text: embryonic stem cell

text: human

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TERT overexpression

text: Homo sapiens

text: female

characteristic: sex

text: hESCs RTEL1-/- 55

characteristic: title


E-MTAB-12582:hESCs RTEL1-/- 56

text: UNIVERSITY OF CALIFORNIA, BERKELEY

text: public

text: E-MTAB-12582:hESCs RTEL1-/- 56

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: blastula stage

text: normal

text: TP53-/-, p16-/-, RTEL1-/-

text: Homo sapiens

text: Homo sapiens

text: TERT overexpression

characteristic: phenotype

text: Homo sapiens

text: female

text: hESCs RTEL1-/- 56


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM), Shanghai0, China, 20001.

text: ArrayExpress

text: B cell CD11c-T-bet-

text: house mouse

text: Protocols: T-bet-tdTomato reporter mice were adoptive transferred of CD4+ T cells from Bm12 mice. After 14 days, ABCs (CD11c+T-bet+CD21- B cell) and non-ABCs (CD11c-T- bet- B cell) were sorted by FACSAria II. Total RNA was extracted using TRIzol reagent (15596018, Thermo Fisher) Total RNA was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations.

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM), Shanghai0, China, 20001.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: B cell CD11c-T-bet-

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: B cell CD11c+T-bet+

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:Department of Hematology cancer institute ErasmusMC

unit: day

characteristic: age

text: ArrayExpress

text: pre hematopoietic stem cell 1

text: house mouse

text: Protocols: AGMs were microdissected and cells were dissociated using collagenase III. Cells were sorted using a FACS Aria III in trizol RNA was extrated from trizol cDNA was smarter amplified

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: Gata2 +/-

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: aorta-gonad-mesonephros

characteristic: organism part

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

text: Department of Hematology cancer institute ErasmusMC

text: public

text: ArrayExpress

characteristic: broker name

text: pre hematopoietic stem cell 1

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: Gata2 +/-

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: pre hematopoietic stem cell 2

text: house mouse

text: embryo stage

text: normal

text: Gata2 +/-

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: pro hematopoietic stem cell

text: house mouse

text: embryo stage

text: normal

text: Gata2 +/-

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus


text: public

text: ArrayExpress

text: pre hematopoietic stem cell 1

text: house mouse

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: aorta-gonad-mesonephros

characteristic: organism part

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: pre hematopoietic stem cell 2

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: pro hematopoietic stem cell

text: house mouse

text: embryo stage

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Protocols: AGMs were microdissected and dissociated using collagenase III and FACS sorted in DNAse buffer After DNAse treatement, DNA was isolated Libraries were quantified using Qubit and NEBNext Library Quant Kit for Illumina (NEB)

text: embryo stage

text: normal

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus


text: public

characteristic: age

text: ArrayExpress

text: house mouse

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: WT

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden

text: ArrayExpress

characteristic: broker name

text: embryonic cell line

text: embryonic stem cell

text: human

characteristic: common name

text: Protocols: Cells were detached after 4 hours, 24 hours, and 72 hours of CHIR treatment (n = 6 wells per time point). The cell suspensions were filtered through a 40 mm cell strainer (KKE3.1, Carl Roth), and cell concentrations were evaluated using a hemocytometer in a Leica DM 204 IL LED microscope and adjusted to 1’000 cells/µl. hESCs were cultured in Essential 8TM medium (A1517001, ThermoFisher Scientific) in plates and flasks coated with 10 mg/ml Vitronectin (A14700, ThermoFisher Scientific). Cells were passaged by incubation in 0.5 mM EDTA-PBS (stock: 0.5 M EDTA, AM9260G, Thermo Fisher Scientific). Cells were treated with 10 mM GSK-3 inhibitor CHIR99021 (SML1046-25MG, Sigma-Aldrich) for 4 hours, 24 hours, and 72 hours (n = 6 wells per time point). Single cells were run in a 10X Chromium Controller and samples were further processed according to the manufacturer’s indications (10X Genomics; v3 protocol). Library preparation was performed according to the manufacturer’s indications (10X Genomics; v3 protocol)

characteristic: description

text: embryo stage

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden

characteristic: INSDC center name

text: public

text: ArrayExpress

text: embryonic cell line

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE

characteristic: collection date

text: Acinetobacter baumanii isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: Culture

characteristic: isolate

text: Hospital patient

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

tag: Namespace:1) Department of Morphology, Biomedical Research Institute, Faculty of Medicine and Life Sciences, Hasselt University, Belgium  2) Laboratory of Tissue Plasticity in Health and Disease, Cluster of Stem Cell and Developmental Biology, Department of Development and Regeneration, KU Leuven (University of Leuven), Leuven, Belgium

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: ITO

text: house mouse

text: Protocols: Early-passage (P0) molar- and incisor tooth organoids (MTO, ITO respectively) grown in TOM with or without exogenous EGF, or P5 MTO and ITO grown in TOM+EGF and exposed to DM or not (n=3 biological replicates per condition) were harvested from Matrigel droplets using ice-cold serum-free defined medium (SFDM; DMEM/F12 1:1, 5 mg/l human transferrin, 5mg/l insulin Hybrimax from bovine pancreas, 35mg/L penicillin, 50mg/L streptomycin, 600uL/L ethanol, 50µl/L catalase, 1g/L NaHCO3, 0.5% BSA). Collected samples were lysed with lysis buffer from the GenElute Mammalian Total RNA Miniprep kit (Sigma-Aldrich) following manufacturer’s instructions. C57BL/6 postnatal day 7 pups were euthanized by decapitation, after which the mandibles were collected in Dulbecco’s Modified Eagle Medium with 10 mM HEPES (DMEM; Gibco), supplemented with 10% fetal bovine serum (FBS; Sigma-Aldrich) and 1% penicillin-streptomycin (Gibco). Whole (unerupted) molars, including surrounding dental follicle and attached epithelium, as well as apical ends of (unerupted) incisors were carefully isolated, rinsed with phosphate-buffered saline (PBS; Gibco) and incubated with 2.5% Trypsin (Gibco) for 30 minutes at 37°C. Following trypsinization, the dental follicle and attached epithelium were manually recovered from the molars, and the dental pulp was separately collected from the molar pulp chamber. Subsequently, the molar (dental follicle and attached epithelium) and incisor tissues were further enzymatically digested with TrypLE Express (Gibco) supplemented with 5 μM ROCK inhibitor (ROCKi, Y-27632; Thermo Fisher) for 15 minutes at 37°C, and mechanically triturated (using syringes with decreasing diameters: 18G (Terumo), 20G (BD) and 26G (BD)) to a suspension containing single cells and small cell clusters. The number of collected cells was determined with a Z2 Coulter Particle Count and Size analyzer using COULTER Z2 AccuComp software (Beckman Coulter). The dissociated molar and incisor dental epithelial cell material was resuspended in SFDM and growth factor-reduced Matrigel (Corning) at a 30:70 ratio, supplemented with 10 μM ROCKi. Cells were seeded at 20,000 and 12,500 cells per 20 μL drop from molars and incisors, respectively. After solidification, pre-warmed TOM (SFDM supplemented with with 0.5 uM A83-01, 1X B27, 100 ng/mL cholera toxin, 20 ng/mL bFGF, 200 ng/mL FGF8, 100 ng/mL FGF10, 2 mM L-glutamine, 100 ng/mL IGF1, 1X N2, 1.25 mM N-acetyl L-cysteine, 10 mM Nicotinamide, 100 ng/mL noggin, 200 ng/mL RSPO1, 10 uM SB202190, 100 ng/mL SHH and 200 ng/mL WNT3) was added. Organoid cultures were kept at 37 °C in a 1.9% CO2 incubator (as required by the SFDM buffering system), and medium was refreshed every 2 days. To passage the TO as occurring every 7-10 days, Matrigel droplets were collected using ice-cold SFDM, followed by incubation with TrypLE containing 5 μM ROCKi and mechanical trituration to dissociate the organoids. Remaining large organoid fragments were allowed to sediment, and the cell number in the supernatant, containing single cells and small fragments, was determined as described above. Upon reaching stable growth, dissociated MTO and ITO were seeded at 15,000-20,000 cells and 7,500 cells per 20 μL droplet, respectively. Early passage organoids (passage 0) for characterization were grown in TOM or TOM supplemented with 20 ng/mL EGF. Late passage organoids (passage 5) for differentiation experiments were grown in TOM supplemented with 20 ng/mL EGF for 7 days before medium was switched to differentiation DM (SFDM supplemented with 1X B27, 100 ng/mL BMP2, 50 ng/mL BMP4, 20 ng/mL EGF, 20 ng/mL bFGF and 4 ng/mL TGF-beta1) for 7 more days before collection. Total RNA was isolated using the GenElute Mammalian Total RNA Miniprep kit (Sigma-Aldrich) following manufacturer’s instructions, and RNA Integrity Number (RIN) determined with Agilent Picochips on an Agilent BioAnalyzer 2100 (Agilent Technologies). Samples with RIN > 7.5 were sequenced. TruSeq total stranded RNA library preparation was performed.

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: TOM + EGF

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: incisor

characteristic: passage

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: 1) Department of Morphology, Biomedical Research Institute, Faculty of Medicine and Life Sciences, Hasselt University, Belgium 2) Laboratory of Tissue Plasticity in Health and Disease, Cluster of Stem Cell and Developmental Biology, Department of Development and Regeneration, KU Leuven (University of Leuven), Leuven, Belgium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: ITO

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: DM

text: Mus musculus

text: Mus musculus

text: incisor

characteristic: organism part

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: ITO

text: house mouse

text: normal

text: wild type genotype

text: TOM + EGF

text: Mus musculus

text: Mus musculus

text: incisor

text: Mus musculus

characteristic: title


text: public

text: ArrayExpress

text: MTO

text: house mouse

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: TOM + EGF

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: molar

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: MTO

text: house mouse

text: normal

text: wild type genotype

text: DM

text: Mus musculus

text: Mus musculus

text: molar

characteristic: passage

text: Mus musculus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: ITO

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: TOM - EGF

text: Mus musculus

text: Mus musculus

text: incisor

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: MTO

text: house mouse

text: normal

text: wild type genotype

text: TOM - EGF

text: Mus musculus

text: Mus musculus

text: molar

characteristic: organism part

text: Mus musculus


text: Researcher

text: public

unit: week

characteristic: age

text: ArrayExpress

text: blood cell

text: Vaccinated

characteristic: clinical history

text: pig

text: Protocols: Peripheral blood mononuclear cells (PBMC) were prepared from heparinised blood using Histopaque and frozen in foetal calf serum supplemented with 10% DMSO. Cells were defrosted into warm RPMI GlutaMAX HEPES media supplemented with 10% foetal calf serum, 1 mM sodium pyruvate, 50 µM 2-mercaptoethanol, 100 IU/mL penicillin and 100 µg/mL streptomycin (RPMI/10). Nucleic acid was extracted from one million cells using a MagMAX mirvRNA Total RNA extraction kit on a MagMAX™ Express-96 Deep Well Magnetic Particle Processor. 3’UTR sequencing

text: African Swine Fever (ASF)

characteristic: disease

text: MHC homozygous inbred Large White Babraham

characteristic: genotype

text: Sus scrofa

text: Sus scrofa

text: blood

text: Non-recovered

characteristic: phenotype

text: Sus scrofa

text: female

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Researcher

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: blood cell

text: Vaccinated

text: pig

text: African Swine Fever (ASF)

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blood

text: Non-recovered

text: Sus scrofa

text: male


characteristic: ENA-CHECKLIST

text: Researcher

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: blood cell

text: Vaccinated

text: pig

characteristic: common name

characteristic: description

text: African Swine Fever (ASF)

text: Sus scrofa

text: Sus scrofa

text: blood

text: Recovered

text: Sus scrofa

text: male


text: Researcher

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: blood cell

text: Sham

characteristic: clinical history

text: pig

text: African Swine Fever (ASF)

characteristic: disease

text: Sus scrofa

text: Sus scrofa

text: blood

characteristic: organism part

text: Non-recovered

text: Sus scrofa

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Researcher

text: public

text: ArrayExpress

text: blood cell

text: Sham

text: pig

text: African Swine Fever (ASF)

characteristic: genotype

text: Sus scrofa

text: Sus scrofa

text: blood

text: Non-recovered

characteristic: phenotype

text: Sus scrofa

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Researcher

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: blood cell

text: Vaccinated

text: pig

text: African Swine Fever (ASF)

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blood

text: Recovered

text: Sus scrofa

text: female


text: ETH Zurich

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ETH Zurich

characteristic: Submitter Id

text: ArrayExpress

text: group 1

characteristic: cohort

text: house mouse

characteristic: common name

text: Protocols: CD62L+TCF1+ and CD62L-TCF1- cells derived from either antibody-induced (AB) activation or from gp33 (high affinity) or C6 (low affinity) peptide stimulation were sorted on day 6 post activation. Qiagen Micro RNA kit SmartSeq2 kit was used for library preparation

characteristic: description

characteristic: individual

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

text: public

text: ArrayExpress

characteristic: broker name

text: group 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: ETH Zurich

text: public

text: ArrayExpress

text: group 3

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-12571:Gata2het_13_42sp_E11_CD31_cKit

characteristic: age

text: ArrayExpress

text: hematopoietic stem cell

text: house mouse

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: GATA2 +/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

characteristic: organism part

text: Mus musculus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12571:Gata2het_4_42sp_E11_CD31_cKit

characteristic: Submitter Id

text: ArrayExpress

text: hematopoietic stem cell

text: house mouse

text: embryo stage

text: normal

text: GATA2 +/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12571:Gata2het_5_43sp_E11_CD31_cKit

text: ArrayExpress

text: hematopoietic stem cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: GATA2 +/-

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-12571:Gata2het_9_43sp_E11_CD31_cKit

text: ArrayExpress

characteristic: broker name

text: hematopoietic stem cell

text: house mouse

text: embryo stage

text: normal

text: GATA2 +/-

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus

characteristic: title


E-MTAB-12571:WT10_44sp_E11_CD13_cKit 5

text: public

text: E-MTAB-12571:WT10_44sp_E11_CD13_cKit 5

characteristic: age

text: ArrayExpress

text: hematopoietic stem cell

text: house mouse

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

characteristic: organism part

text: Mus musculus

text: WT10_44sp_E11_CD13_cKit 5


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: hematopoietic stem cell

text: house mouse

text: embryo stage

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: aorta-gonad-mesonephros

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: in vitro derived B cells

text: house mouse

characteristic: common name

text: Protocols: Mouse splenic B cells were purified by negative selection and cultured in complete medium in the presence of in vitro differentiation cocktails (anti-IgM, R848, anti-CD40, IL-21 plus IFN-γ or IL-4) for 3 days. The in vitro dereived B cells were collected for RNA sequencing. The in vitro indued B cells were resuspended in TRIzol reagent for total RNA extraction. RNA integrity was assessed using the Fragment Analyzer 5400 (Agilent Technologies, CA, USA). Then total RNA was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations. The library fragments were purified with AMPure XP system (Beckman Coulter, Beverly, USA) and library quality was assessed on the Agilent Bioanalyzer 2100 system.

characteristic: description

text: IFNg stimulation condition

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: in vitro derived B cells

text: house mouse

text: IL-4 stimulation condition

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain

characteristic: title


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: GISAID Accession ID

characteristic: INSDC first public

text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: not provided

characteristic: common name

text: Portugal

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: organism


text: Department of Hematology cancer institute ErasmusMC

characteristic: INSDC first public

text: public

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hematopoietic stem cell

text: zebrafish

text: Protocols: Embryos were dissociated using Collagenase 1, 2 and 4 and sorted using a FACS Aria III in trizol RNA was isolated from trizol RNA was smarter amplified

characteristic: description

text: embryo

characteristic: developmental stage

text: Gata2b +/-

characteristic: genotype

text: CD41:GFP+ Flt1:RFP+

characteristic: immunophenotype

text: pools of 3 embryos (1)

characteristic: individual

text: Danio rerio

text: Danio rerio

text: liver

characteristic: organism part

text: Danio rerio

text: Tg(CD41:GFP) Tg(Flt1:RFP) Gata2b KO

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

text: hematopoietic stem cell

text: zebrafish

text: embryo

text: Gata2b +/-

text: CD41:GFP+ Flt1:RFP+

text: pools of 3 embryos (2)

text: Danio rerio

text: Danio rerio

text: liver

text: Danio rerio

text: Tg(CD41:GFP) Tg(Flt1:RFP) Gata2b KO


characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: hematopoietic stem cell

text: zebrafish

characteristic: common name

text: embryo

text: Gata2b +/-

text: CD41:GFP+ Flt1:RFP+

text: pools of 3 embryos (3)

text: Danio rerio

characteristic: organism

text: Danio rerio

text: liver

text: Danio rerio

text: Tg(CD41:GFP) Tg(Flt1:RFP) Gata2b KO