E-MTAB-12783:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 4

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: ecotype

text: AlcR empty vector

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: wild type phenotype

text: Arabidopsis thaliana

text: Sample 4


E-MTAB-12783:Sample 33

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPI Potsdam, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12783:Sample 33

tag: Namespace:MPI Potsdam, Germany

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Protocols: Seeds were sown on a 1:1 mixture of compost (Stender AG, Schermbeck, Germany; https://www.stender.de) and vermiculite in 6-cm diameter pots, covered and kept at 4°C in the dark for 48 h then transferred to a controlled environment chamber (Percival E-36 L chamber, CLF Plant Climatics GmbH, Weringen, Germany; https://www.plantclimatics.de/) with a 16-h photoperiod (160 µmol m-2 s-1 irradiance provided by white LEDs) and day/night temperatures of 21°C/19°C. After germination, seedlings were transferred to 10-cm diameter pots (five seedlings per pot), and grown as above until 21 days after sowing (DAS). Three-weeks-old plants were sprayed to run-off with water (mock-induced control) or 2% (v/v) ethanol (induced) at the beginning of the day (ZT0.5) and harvested at time 0 (in the light, before spray), 2, 4 and 6 h after spraying. Total RNA was extracted with Plant RNA easy extraction kit according to manufactures protocol. RNA concentration and purity were estimated by photometric analysis using a NanoDrop® ND-1000 UV-VIS spectrophotometer (Thermo Fisher Scientific Inc. Waltham, MA., USA; www.thermoscientific.com). If necessary, RNA was diluted with water to a final concentration of 2 µg/µl. RNA integrity was confirmed by agarose (1%) gel electrophoresis and by Bioanalyzer 2100 (Agilent Technologies). DNA was removed by treatment with Turbo DNA-free™ DNase I enzyme (Applied Biosystems) according to the manufacturer’s instructions. This was done by BGI genomics. Quality control and the processing of raw data were done by BGI and included barcode trimming and the removal of adaptor sequences, as well as of low-quality reads, generating 20M clean Pair Ends reads (100 bp) for each sample.

characteristic: description

text: leaf development stage

characteristic: developmental stage

text: AlcR empty vector

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: wild type phenotype

characteristic: phenotype

text: Arabidopsis thaliana

text: Sample 33

characteristic: title


E-MTAB-12783:Sample 34

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 34

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: ecotype

text: AlcR empty vector

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: wild type phenotype

text: Arabidopsis thaliana

text: Sample 34


E-MTAB-12783:Sample 35

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPI Potsdam, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12783:Sample 35

text: ArrayExpress

text: thale cress

text: leaf development stage

text: AlcR empty vector

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: wild type phenotype

text: Arabidopsis thaliana

text: Sample 35


E-MTAB-12783:Sample 36

text: MPI Potsdam, Germany

text: public

characteristic: SRA accession

text: E-MTAB-12783:Sample 36

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: leaf development stage

text: AlcR empty vector

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: wild type phenotype

text: Arabidopsis thaliana

text: Sample 36


E-MTAB-12783:Sample 29

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 29

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: developmental stage

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

characteristic: phenotype

text: Arabidopsis thaliana

text: Sample 29

characteristic: title


E-MTAB-12783:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 30

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: ecotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 30


E-MTAB-12783:Sample 31

text: MPI Potsdam, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12783:Sample 31

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 31


E-MTAB-12783:Sample 32

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 32

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 32


E-MTAB-12783:Sample 45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 45

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: developmental stage

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

characteristic: phenotype

text: Arabidopsis thaliana

text: Sample 45

characteristic: title


E-MTAB-12783:Sample 46

text: MPI Potsdam, Germany

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12783:Sample 46

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: ecotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 46


E-MTAB-12783:Sample 47

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12783:Sample 47

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 47


E-MTAB-12783:Sample 48

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 48

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 48


E-MTAB-12783:Sample 25

text: MPI Potsdam, Germany

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12783:Sample 25

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: developmental stage

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

characteristic: phenotype

text: Arabidopsis thaliana

text: Sample 25

characteristic: title


E-MTAB-12783:Sample 26

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 26

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: ecotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 26


E-MTAB-12783:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPI Potsdam, Germany

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12783:Sample 27

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 27


E-MTAB-12783:Sample 28

text: MPI Potsdam, Germany

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12783:Sample 28

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 28


E-MTAB-12783:Sample 37

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 37

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: developmental stage

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

characteristic: phenotype

text: Arabidopsis thaliana

text: Sample 37

characteristic: title


E-MTAB-12783:Sample 38

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 38

text: ArrayExpress

text: thale cress

text: leaf development stage

characteristic: ecotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 38


E-MTAB-12783:Sample 39

text: MPI Potsdam, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12783:Sample 39

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 39


E-MTAB-12783:Sample 40

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI Potsdam, Germany

text: public

text: E-MTAB-12783:Sample 40

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: leaf development stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: ethanol-inducible otsA expression

text: Arabidopsis thaliana

text: Sample 40


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cardiff University

text: public

tag: Namespace:Cardiff University

text: Bacteria

text: A sphingopyxis isolated from a drinking water treatment works sand filter able to biodergade geosmin

text: Australian drinking water treatment works' sand filter

text: Sphingopyxis sp. Geo24

characteristic: organism

text: Sphingopyxis sp. Geo24

text: Sphingopyxis sp. Geo24

characteristic: title


text: Cardiff University

text: public

text: Bacteria

text: Sphingopyxis sp. Geo25

text: Sphingopyxis sp. Geo25

text: Sphingopyxis sp. Geo25


text: Cardiff University

text: public

text: Bacteria

text: Sphingopyxis sp. Geo48

text: Sphingopyxis sp. Geo48

text: Sphingopyxis sp. Geo48


text: University of Murcia-IMIB-Arrixaca

text: public

text: house mouse

text: Wild type PC

text: Mus musculus

text: Mus musculus


text: University of Murcia-IMIB-Arrixaca

text: public

text: house mouse

text: CMA deficient PC

text: Mus musculus

text: Mus musculus


text: The University of Warwick

text: public

tag: Namespace:The University of Warwick

text: Illumina reads from A. freiburgensis mixed stage samples (all sexes) replica 1

text: Mixed stages

text: Auanema freiburgensis

text: Auanema freiburgensis

text: mixed stage samples (strain SB372) sample 1


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis mixed stage samples (all sexes) replica 2

text: Mixed stages

text: Auanema freiburgensis

text: Auanema freiburgensis

text: mixed stage samples (strain SB372) sample 2


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis mixed stage samples (all sexes) replica 3

text: Mixed stages

text: Auanema freiburgensis

text: Auanema freiburgensis

text: mixed stage samples (strain SB372) sample 3


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis hermaphrodites without crowding signal replica 1

text: Day 2 adult hermaphrodites

text: Auanema freiburgensis

text: Auanema freiburgensis


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis hermaphrodites without crowding signal replica 2

text: Day 2 adult hermaphrodites

text: Auanema freiburgensis

text: Auanema freiburgensis


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis hermaphrodites without crowding signal replica 3

text: Day 2 adult hermaphrodites

text: Auanema freiburgensis

text: Auanema freiburgensis


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis hermaphrodites with crowding signal replica 1

text: Day 2 adult hermaphrodites

text: Auanema freiburgensis

text: Auanema freiburgensis


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis hermaphrodites with crowding signal replica 2

text: Day 2 adult hermaphrodites

text: Auanema freiburgensis

text: Auanema freiburgensis


text: The University of Warwick

text: public

text: Illumina reads from A. freiburgensis hermaphrodites with crowding signal replica 3

text: Day 2 adult hermaphrodites

text: Auanema freiburgensis

text: Auanema freiburgensis


text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: not provided


Phanie

text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: public

text: Phanie

tag: Namespace:INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: C. Essoh

text: Aci01-2-Phanie is a novel Acinetobacter baumannii phage recovered from waste-water in Adjam�, Frat mat, Abidjan (C�te d'Ivoire). It possesses a 12kb DNA genome and long inverted terminal repeats, and necessitates a helper phage such as Aci01-1 for its multiplication

characteristic: description

text: Cote d'Ivoire

characteristic: geographic location (country and/or sea)

text: Abidjan

characteristic: geographic location (region and locality)

text: wastewater

text: Acinetobacter baumannii B09

text: Acinetobacter phage Phanie

text: Acinetobacter phage Phanie

characteristic: title


text: public

tag: Namespace:Max-Planck-Institute for Plant Breeding Research

text: Flowpot

characteristic: broad-scale environmental context

characteristic: collection date

text: Peat

characteristic: environmental medium

text: Germany

text: not provided

unit: DD

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: Root

characteristic: local environmental context

text: rhizosphere metagenome

text: Cofunctioning of bacterial exometabolites drives root microbiota establishment

characteristic: project name

text: rhizosphere metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max-Planck-Institute for Plant Breeding Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Flowpot

text: Peat

text: Germany

text: not provided

text: not provided

text: Root

text: rhizosphere metagenome

text: rhizosphere metagenome


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Flowpot

characteristic: description

text: Peat

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Soil

text: rhizosphere metagenome

characteristic: organism

text: rhizosphere metagenome


text: public

text: Flowpot

characteristic: broad-scale environmental context

characteristic: collection date

text: Peat

characteristic: environmental medium

text: Germany

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: Input

text: rhizosphere metagenome

text: rhizosphere metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wellcome Sanger Institute

text: public

tag: Namespace:Wellcome Sanger Institute

text: ArrayExpress

characteristic: broker name

text: MS5-hDLL4, HPSI0114i-kolf_2, HPSI0514i-fiaj_1

text: mouse stromal cell and human induced pluripotent stem cell

text: Protocols: We followed the PSC-ATO protocol as previously described30. iPSC cells were harvested as a single-cell suspension and seeded (3×106 cells per well) in GFR reduced Matrigel (Corning) - coated 6-well plates in X-VIVO 15 media (Lonza), supplemented with rhActivin A, rhBMP4, rhVEGF, rhFGF (all from R&D Systems), and ROCK inhibitor (Y27632; LKT Labs) on day -17, and only rhBMP4, rhVEGF and rhFGF on days -16 and -15. Cells were harvested 3.5 days later (day-14) , and isolated by FACS for CD326-CD56+ (PE anti-human CD326 antibody, Biolegend, 324205; APC anti-human CD56 antibody, Biolegend, 318309) human embryonic mesodermal progenitors (hEMPs). Isolated hEMPs were combined with MS5-hDLL4 at a ratio of 1:50. Two or three cell-dense droplets (5×105 cells in 6 μl hematopoietic induction medium) were deposited on top of an insert in each well of a six-well plate. Hematopoietic induction medium composed of EGM2 (Lonza) supplemented with ROCK inhibitor and SB blocker (TGF-β receptor kinase inhibitor SB- 431542; Abcam) was added into the wells outside the inserts so that the cells sat at the air-liquid interface. The organoids were then cultured in EGM2 with SB blocker for 7 days (days -14 to -7), before the addition of cytokines rhSCF, rhFLT3L, rhTPO (all from Peprotech) between days -6 to 0. These 2 weeks formed the hematopoietic induction phase. On day 1, media was changed again to RB27 (RPMI supplemented with B27 (Gibco), ascorbic acid (Sigma-Aldrich), penicillin/streptomycin (Sigma-Aldrich) and glutamax (Thermo Fisher Scientific)) with rhSCF, rhFLT3L and rhIL7. The organoids can be maintained in culture for 7 more weeks in this medium. For dissociation of organoids on day -7, they were removed from culture insert and incubated in digestion buffer, which consisted of collagenase type IV solution (StemCell Technologies) supplemented with 0.88mg/ml collagenase/dispase (Roche) and 50U DNase I (Sigma), for 20 minutes at 37°C. Vigorous pipetting was performed in the middle of the incubation and at the end. After complete disaggregation, single cell suspension was prepared by passing through a 50-μm strainer. For dissociation of organoids from day 0 onwards, a cell scraper was used to detach ATOs from cell culture insert membranes and detached ATOs were then submerged in cold flow buffer (PBS (Gibco) containing 2% (v/v) fetal bovine serum (FBS; Gibco) and 2 mM EDTA (Invitrogen)). Culture inserts were washed and detached ATOs were pipetted up and down to form single-cell suspension before passing through a 50-μm strainer. Cells were then stained with designed panels of antibodies and analyzed by flow cytometry. FACS was performed at the same time and live human DAPI-anti-mouse CD29- (APC/Cy7 anti-mouse CD29 antibody, Biolegend, 102225) cells were sorted for day -7, day 0 and week 3 samples, and live (DAPI-) cells were sorted for week 5 and week 7 samples before loading onto each channel of the Chromium chip from Chromium single cell V(D)J kit (10X Genomics). The metadata for all the ATO samples can be found in ATO_manifest.csv. For the day -14 sample, some sorted (both hEMP and the rest of DAPI- fraction) and unsorted cells were stained with hashtag antibodies (TotoalSeq-C antibodies from Biolegend, see ATO_hashtagging.csv, following 10X cell surface protein labeling protocol) before being mixed together with some mouse stromal cells (MS5-hDLL4) for 10X loading. For week 1 sample, hashtag antibodies were added in at the same time as the FACS antibodies i.e. before sorting. Single-cell cDNA synthesis, amplification and gene expression (GEX) and cell surface protein (CITE-seq) libraries were generated following the manufacturer’s instructions. Single-cell cDNA synthesis, amplification and gene expression (GEX) and cell surface protein (CITE-seq) libraries were generated following the manufacturer’s instructions.

text: artificial thymic organoid culture

characteristic: growth condition

text: not applicable

characteristic: isolate

text: mixed sample

text: mixed sample

text: mixed sample


E-MTAB-12720:T03 KOLF_FIAJ D7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12720:T03 KOLF_FIAJ D7

text: ArrayExpress

text: artificial thymic organoid culture

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: T03 KOLF_FIAJ D7


E-MTAB-12720:T03 KOLF_FIAJ D7_CITEseq

text: Wellcome Sanger Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12720:T03 KOLF_FIAJ D7_CITEseq

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: artificial thymic organoid culture

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: T03 KOLF_FIAJ D7_CITEseq


text: public

tag: Namespace:CIIMAR - Interdisciplinary Centre of Marine and Environmental Research

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB3 of Kongsfjorden, at 5m depth

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: oceanic epipelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIIMAR - Interdisciplinary Centre of Marine and Environmental Research

text: public

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB3 of Kongsfjorden, at 15m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB3 of Kongsfjorden, at 300m depth

text: sea water

text: Arctic Ocean

text: oceanic mesopelagic zone biome

text: marine metagenome

text: marine metagenome


text: public

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB6 of Kongsfjorden, at 1m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB6 of Kongsfjorden, at 7m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic epipelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB6 of Kongsfjorden, at 50m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB0 of Kongsfjorden, at 5m depth

text: sea water

text: Arctic Ocean

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB0 of Kongsfjorden, at 14m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station KB0 of Kongsfjorden, at 320m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic mesopelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station V12, between Svalbard and Fram Strait, at 5m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station V12, between Svalbard and Fram Strait, at 28m depth

text: sea water

text: Arctic Ocean

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station V12, between Svalbard and Fram Strait, at 215m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station V6, between Svalbard and Fram Strait, at 5m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic epipelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station V6, between Svalbard and Fram Strait, at 25m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station V6, between Svalbard and Fram Strait, at 1100m depth

text: sea water

text: Arctic Ocean

text: oceanic bathypelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station HG-IV of Fram Strait, at 5m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station HG-IV of Fram Strait, at 18m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic epipelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIIMAR - Interdisciplinary Centre of Marine and Environmental Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: Amplicon sequencing of the V4-V5 16S rRNA gene from seawater collected in the station HG-IV of Fraim Strait, at 2300m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic bathypelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB3 of Kongsfjorden, at 5m depth

text: sea water

text: Arctic Ocean

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB3 of Kongsfjorden, at 15m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB3 of Kongsfjorden, at 300m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic mesopelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB6 of Kongsfjorden, at 1m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB6 of Kongsfjorden, at 7m depth

text: sea water

text: Arctic Ocean

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB6 of Kongsfjorden, at 50m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB0 of Kongsfjorden, at 5m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic epipelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB0 of Kongsfjorden, at 14m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station KB0 of Kongsfjorden, at 320m depth

text: sea water

text: Arctic Ocean

text: oceanic mesopelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station V12, between Svalbard and Fram Strait, at 5m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station V12, between Svalbard and Fram Strait, at 28m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic epipelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station V12, between Svalbard and Fram Strait, at 215m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station V6, between Svalbard and Fram Strait, at 5m depth

text: sea water

text: Arctic Ocean

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station V6, between Svalbard and Fram Strait, at 25m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station V6, between Svalbard and Fram Strait, at 1100m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (longitude)

text: oceanic bathypelagic zone biome

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


text: CIIMAR - Interdisciplinary Centre of Marine and Environmental Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station HG-IV of Fram Strait, at 5m depth

text: sea water

text: Arctic Ocean

characteristic: geographic location (latitude)

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station HG-IV of Fram Strait, at 18m depth

text: sea water

text: Arctic Ocean

text: oceanic epipelagic zone biome

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome

characteristic: depth

text: Amplicon sequencing of the full-length 16S rRNA gene from seawater collected in the station HG-IV of Fraim Strait, at 2300m depth

characteristic: description

text: sea water

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: oceanic bathypelagic zone biome

text: marine metagenome

text: marine metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-09-20 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire

text: In Vivo Adaptation of Engineered Native Bacteria


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-09-20 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-09-16 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-09-16 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-10-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-10-17 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2018-07-17 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2018-07-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-09-20 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-09-20 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: A

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-09-20 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: B

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-09-20 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-09-16 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: A

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-09-16 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-10-17 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-10-17 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: A

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2018-07-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2018-07-17 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-09-20 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: B

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-09-20 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-09-16 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-09-16 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: B

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-10-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2017-10-17 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2018-07-17 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: mouse

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: B

characteristic: sire


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2018-07-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: decription

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA: San Diego

text: weeks

text: g

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: control blank

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA: San Diego

text: weeks

text: g

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control blank

text: metagenome


characteristic: ENA-LAST-UPDATE

text: Universidad de Colima

text: public

tag: Namespace:Universidad de Colima

text: RNA secretory venom-gland

text: Leptoceridae sp. SOCAD029-10

text: Leptoceridae sp. SOCAD029-10

text: Reverse-Reads


characteristic: External Id

text: IAI - Institut des Agents Infectieux

text: public

tag: Namespace:IAI - Institut des Agents Infectieux

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Skin

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: IAI - Institut des Agents Infectieux

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cultured strain

characteristic: description

text: France

text: not provided

text: Homo sapiens

text: Blood culture

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title


text: IAI - Institut des Agents Infectieux

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Perineum

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IAI - Institut des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Furuncle

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

text: IAI - Institut des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: Abscess

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


characteristic: External Id

text: IAI - Institut des Agents Infectieux

text: public

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: Vaginal (menstrual toxic shock syndrome)

text: Staphylococcus aureus

text: Staphylococcus aureus


text: IAI - Institut des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UCSDMI

text: public

text: 2017-07-15 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-07-15 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-07-15 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-07-15 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: B

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-07-15 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-07-15 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-10-17 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-10-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-12-12 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-12-12 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2018-03-13 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2018-03-13 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-09-20 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-09-20 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-12-12 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-12-12 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: A

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2018-03-13 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2018-03-13 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-12-12 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: B

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-12-12 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: B

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2018-03-13 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2018-03-13 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: B

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-10-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-10-17 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-09-20 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: B

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-12-12 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-12-12 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2018-03-13 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: B

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2018-03-13 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-09-20 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 2017-10-17 10:00

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: female

characteristic: sex

text: B

characteristic: sire


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2017-10-17 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: female

text: B

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

characteristic: latitude

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control blank

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: control blank

text: metagenome


text: public

tag: Namespace:Hospital Infantil de Mexico Federico Gomez

text: digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: Gastric corpus biopsy before the administration of the STT

text: corpus gastric tissue

characteristic: environmental medium

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gastric environment

characteristic: local environmental context

text: Homo sapiens

text: Histopathological evaluation and dysbiotic events in the gastric microbiota of patients diagnosed with follicular gastropathy treated with a standard triple therapy for eradication of Helicobacter pylori infection: Description of a series of cases

characteristic: project name

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: Hospital Infantil de Mexico Federico Gomez

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: digestive tract environment

text: human

characteristic: description

text: corpus gastric tissue

text: Mexico

text: gastric environment

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: human

text: Gastric corpus biopsy after the administration of the STT

text: corpus gastric tissue

text: Mexico

text: gastric environment

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: UCSDMI

text: public

text: 2018-03-13 10:00

characteristic: dam

text: rc

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

characteristic: latitude

text: adult

characteristic: longitude

characteristic: mouse

text: mouse gut metagenome

text: UCSDMI

text: FALSE

characteristic: plate

characteristic: run

text: fecal culture

text: mouse gut metagenome

text: male

characteristic: sex

text: A

characteristic: sire


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2018-03-13 10:00

characteristic: description

text: rc

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Thermo CORE

text: magnetic bead

text: USA:CA: San Diego

text: Mus musculus

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: ucsd

text: adult

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: fecal culture

text: mouse gut metagenome

text: male

text: A

characteristic: title