characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_ae8c7198/2023

characteristic: isolate

characteristic: sample capture status


status: PUBLIC

tag: attribute

characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University Hospital Basel

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_11_6d446345/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_d1fc3a28/2023

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_4fc5b820/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_11_aa0e795c/2023

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: JU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/JU-UHB-USB_2023_04_11_28ffbf78/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_be92d285/2023


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_11_f911d4f8/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_3b454c07/2023

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_11_86eee44d/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_432ea0f1/2023

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_93a42c2c/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_11_383520d4/2023


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: JU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/JU-UHB-USB_2023_04_11_70f3f578/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_d738733a/2023

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_17c14dcb/2023

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_11_37b29e87/2023

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_c01137ee/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_71c69df1/2023


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_3077531d/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_6f66bfb4/2023

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_11_658909cf/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_85f7c614/2023

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: SO

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SO-UHB-USB_2023_04_11_f1f592d3/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_f50c0a0c/2023


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: University Psychiatric Clinics Basel, Basel, Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_11_f0462a2b/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC last update

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

text: Zuid-Holland

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: Throat/Nasal

characteristic: isolation source host-associated

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: Throat/Nasal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC last update

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Zuid-Holland

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: organism

characteristic: title


characteristic: External Id

text: The Francis Crick Insitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:The Francis Crick Insitute

characteristic: Submitter Id

text: United Kingdom

text: Yersinia pestis

text: Yersinia pestis

text: C10928 Shotgun


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: bisy GmbH

text: public

tag: Namespace:bisy GmbH

text: K. phaffii BSYBG10 uninduced, plateau phase, t0

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435

characteristic: strain


text: bisy GmbH

characteristic: INSDC last update

text: public

text: K. phaffii BSYBG10 uninduced, starvation, t3

characteristic: description

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: bisy GmbH

text: public

text: K. phaffii BSYBG10 induced with galactose, starvation, t3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: bisy GmbH

text: public

text: K. phaffii BSYBG10 induced with xylose, starvation, t3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: bisy GmbH

text: public

text: K. phaffii BSYBG10 induced with xylitol, starvation, t3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: bisy GmbH

text: public

text: K. phaffii BSYBG10 induced with tetracylcline, starvation, t3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: bisy GmbH

text: public

text: K. phaffii BSYBG10 induced with sorbitol, starvation, t3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: External Id

text: University of Exeter

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Exeter

text: Eunicella verrucosa

text: Eunicella verrucosa


text: public

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characteristic: INSDC status

text: ENVO:human-associated habitat

text: human

text: UNKNOWN DATE TB INFECTION V1

characteristic: description

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (country and/or sea)

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 220


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ENVO:human-associated habitat

text: human

text: EARLY TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Nasal microbiome sample 225

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ENVO:human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: NON TB INFECTED V1

text: ENVO:human-associated habitat

characteristic: environmental medium

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 227


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ENVO:human-associated habitat

text: human

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ENVO:human-associated habitat

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Nasal microbiome sample 228


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

characteristic: description

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (country and/or sea)

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 231


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ENVO:human-associated habitat

text: human

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Nasal microbiome sample 232

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ENVO:human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

characteristic: environmental medium

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 235


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ENVO:human-associated habitat

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Nasal microbiome sample 240


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ENVO:human-associated habitat

text: human

text: UNKNOWN DATE TB INFECTION V1

characteristic: description

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (country and/or sea)

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 242


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ENVO:human-associated habitat

text: human

text: EARLY TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Nasal microbiome sample 244

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ENVO:human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

characteristic: environmental medium

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 246


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ENVO:human-associated habitat

text: human

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ENVO:human-associated habitat

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Nasal microbiome sample 247


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ENVO:human-associated habitat

text: human

text: EARLY TB INFECTION V1

characteristic: description

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (country and/or sea)

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 248


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

text: ENVO:human-associated habitat

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Nasal microbiome sample 251

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ENVO:human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: EARLY TB INFECTION V1

text: ENVO:human-associated habitat

characteristic: environmental medium

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 252


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ENVO:human-associated habitat

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Nasal microbiome sample 255


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

characteristic: description

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (country and/or sea)

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 257


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

text: ENVO:human-associated habitat

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Nasal microbiome sample 261

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ENVO:human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

characteristic: environmental medium

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 262


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ENVO:human-associated habitat

text: human

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ENVO:human-associated habitat

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Nasal microbiome sample 263


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

characteristic: description

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (country and/or sea)

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 265


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ENVO:human-associated habitat

text: human

text: EARLY TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Nasal microbiome sample 272

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ENVO:human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

characteristic: environmental medium

text: Chile

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 273


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ENVO:human-associated habitat

text: human

text: UNKNOWN DATE TB INFECTION V1

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ENVO:human-associated habitat

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Nasal microbiome sample 274


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ENVO:human-associated habitat

text: human

text: NON TB INFECTED V1

characteristic: description

text: ENVO:human-associated habitat

text: Chile

characteristic: geographic location (country and/or sea)

text: ENVO:human-associated habitat

text: Homo sapiens

text: Homo sapiens

text: Nasal microbiome sample 281


Aestuariimicrobium

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GENGS-CBMSO

text: public

characteristic: SRA accession

text: Aestuariimicrobium

characteristic: Submitter Id

text: GENGS-CBMSO

characteristic: broker name

text: Paired-end read

text: Aestuariimicrobium sp. T2.26MG-19.2B

characteristic: organism

text: Aestuariimicrobium sp. T2.26MG-19.2B

text: Paired-end read

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Aestuariimicrobium sp. T2.26MG-19.2B

text: Aestuariimicrobium sp. T2.26MG-19.2B


text: UNIVERSITY OF GENEVA

text: public

tag: Namespace:UNIVERSITY OF GENEVA

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This is a Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP022980. This sample represents a Metagenome-assembled genome from the metagenomic run ERR1989816.

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Porphyromonadaceae bacterium

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR1989816 of study ERP022980.

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00002_1681810171


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00003_1681810157

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00005_1681810102


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00007_1681810119

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Odoribacter sp.

characteristic: sample derived from

text: uncultured Odoribacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00008_1681810176


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: Muribaculum intestinale

characteristic: organism

characteristic: project name

text: Muribaculum intestinale

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00009_1681810167

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00010_1681810128


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00011_1681810160

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00012_1681810171


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

characteristic: project name

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00014_1681810103

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Prevotella sp.

characteristic: sample derived from

text: uncultured Prevotella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00016_1681810098


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: Turicimonas muris

characteristic: organism

characteristic: project name

text: Turicimonas muris

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00017_1681810142

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00018_1681810093


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

text: This is a Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP022980. This sample represents a Metagenome-assembled genome from the metagenomic run ERR1989816.

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Christensenellaceae bacterium

characteristic: organism

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR1989816 of study ERP022980.

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00019_1681810162

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00020_1681810121


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Christensenella sp.

characteristic: organism

characteristic: project name

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00021_1681810093

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00023_1681810171


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00024_1681810092

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00025_1681810162


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

characteristic: project name

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00026_1681810149

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Christensenella sp.

characteristic: sample derived from

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00027_1681810108


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Christensenella sp.

characteristic: organism

characteristic: project name

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00028_1681810166

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00029_1681810153


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

text: This is a Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP022980. This sample represents a Metagenome-assembled genome from the metagenomic run ERR1989817.

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Christensenella sp.

characteristic: organism

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR1989817 of study ERP022980.

characteristic: project name

text: uncultured Christensenella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00031_1681810171

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00032_1681810146


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

characteristic: project name

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00034_1681810168

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00036_1681810178


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Porphyromonadaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Porphyromonadaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00037_1681810114

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GENEVA

text: public

text: default

characteristic: binning parameters

characteristic: binning software

text: Host-associated

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Cecum

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Mouse digestive system

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Akkermansia muciniphila

characteristic: sample derived from

text: Akkermansia muciniphila

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MGG00038_1681810175


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GENEVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

text: Host-associated

characteristic: description

text: Cecum

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: Mouse digestive system

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: MGG00039_1681810137

characteristic: title