characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835851 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Escherichia coli

characteristic: project name

characteristic: sample derived from

text: Escherichia coli

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835851_bin.29_MetaWRAP_v1.1_bin


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836888 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

unit: DD

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__Candidatus Ornithomonoglobus;s__Candidatus Ornithomonoglobus merdipullorum

text: multi-marker approach

text: Binned metagenome: ERR4836888_bin.25_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836886 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836886_bin.16_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836908 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Candidatus Gallimonas merdigallinarum

characteristic: organism

text: Candidatus Gallimonas merdigallinarum

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdigallinarum

text: multi-marker approach

text: Binned metagenome: ERR4836908_bin.57_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836966 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Roseburia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Roseburia sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Roseburia;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836966_bin.40_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836964 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4836964_bin.63_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Fimenecus excrementavium

characteristic: project name

characteristic: sample derived from

text: Candidatus Fimenecus excrementavium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__Candidatus Fimenecus;s__Candidatus Fimenecus excrementavium

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836886_bin.12_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836958 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Eubacteriales bacterium

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: uncultured Eubacteriales bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4836958_bin.35_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836037 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836037_bin.54_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836924 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

characteristic: organism

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus faecipullorum

text: multi-marker approach

text: Binned metagenome: ERR4836924_bin.32_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835866 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

characteristic: project name

characteristic: sample derived from

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Eisenbergiella;s__Candidatus Eisenbergiella merdigallinarum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835866_bin.34_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Candidatus Butyricicoccus avistercoris

characteristic: organism

text: Candidatus Butyricicoccus avistercoris

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Butyricicoccus;s__Candidatus Butyricicoccus avistercoris

text: multi-marker approach

text: Binned metagenome: ERR4836037_bin.39_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836886 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

characteristic: project name

characteristic: sample derived from

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Faecalibacterium;s__Candidatus Faecalibacterium faecigallinarum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836886_bin.18_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836966 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridium sp.

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: uncultured Clostridium sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__

text: multi-marker approach

text: Binned metagenome: ERR4836966_bin.78_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836953 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836953_bin.6_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836961 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4836961_bin.70_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835933 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Faecivivens stercoripullorum

characteristic: project name

characteristic: sample derived from

text: Candidatus Faecivivens stercoripullorum

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Candidatus Faecivivens;s__Candidatus Faecivivens stercoripullorum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835933_bin.38_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836924 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Christensenella sp.

characteristic: organism

text: uncultured Christensenella sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Christensenellaceae;g__Christensenella;s__

text: multi-marker approach

text: Binned metagenome: ERR4836924_bin.26_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836942 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836942_bin.50_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836937 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Cloacibacillus sp.

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: uncultured Cloacibacillus sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Synergistetes;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Cloacibacillus;s__

text: multi-marker approach

text: Binned metagenome: ERR4836937_bin.14_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836930 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836930_bin.12_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835860 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Candidatus Fimenecus excrementavium

characteristic: organism

text: Candidatus Fimenecus excrementavium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__Candidatus Fimenecus;s__Candidatus Fimenecus excrementavium

text: multi-marker approach

text: Binned metagenome: ERR4835860_bin.26_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835871 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridium sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835871_bin.30_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836885 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

characteristic: organism

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Agathobaculum;s__Candidatus Agathobaculum intestinigallinarum

text: multi-marker approach

text: Binned metagenome: ERR4836885_bin.15_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835857 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835857_bin.6_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835991 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Faecalibacterium;s__Candidatus Faecalibacterium faecigallinarum

text: multi-marker approach

text: Binned metagenome: ERR4835991_bin.4_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836923 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Coproplasma stercoripullorum

characteristic: project name

characteristic: sample derived from

text: Candidatus Coproplasma stercoripullorum

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Coproplasma;s__Candidatus Coproplasma stercoripullorum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836923_bin.13_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836926 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Eubacteriales bacterium

characteristic: organism

text: uncultured Eubacteriales bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4836926_bin.25_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836888 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Anaerostipes sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerostipes sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerostipes;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836888_bin.18_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836885 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Eubacterium sp.

characteristic: organism

text: uncultured Eubacterium sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__

text: multi-marker approach

text: Binned metagenome: ERR4836885_bin.20_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835858 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835858_bin.4_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836953 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: uncultured Clostridia bacterium

text: multi-marker approach

text: Binned metagenome: ERR4836953_bin.4_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836951 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Anaerostipes sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerostipes sp.

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836951_bin.9_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836933 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: uncultured Oscillospiraceae bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4836933_bin.7_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836935 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836935_bin.1_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836936 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

characteristic: organism

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Lachnoclostridium;s__Candidatus Lachnoclostridium stercorigallinarum

text: multi-marker approach

text: Binned metagenome: ERR4836936_bin.1_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836924 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836924_bin.25_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836942 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: uncultured Oscillospiraceae bacterium

text: multi-marker approach

text: Binned metagenome: ERR4836942_bin.13_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836961 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Alistipes putredinis

characteristic: project name

characteristic: sample derived from

text: Alistipes putredinis

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836961_bin.81_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835869 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Candidatus Gallimonas merdigallinarum

characteristic: organism

text: Candidatus Gallimonas merdigallinarum

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdigallinarum

text: multi-marker approach

text: Binned metagenome: ERR4835869_bin.5_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835859 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridium sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835859_bin.37_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835934 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Eubacteriales bacterium

characteristic: organism

text: uncultured Eubacteriales bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Caccovivens;s__

text: multi-marker approach

text: Binned metagenome: ERR4835934_bin.20_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835854 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Eisenbergiella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Eisenbergiella sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Eisenbergiella;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835854_bin.7_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835850 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Firmicutes bacterium

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: uncultured Firmicutes bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4835850_bin.17_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836027 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Faecivivens stercoripullorum

characteristic: project name

characteristic: sample derived from

text: Candidatus Faecivivens stercoripullorum

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Candidatus Faecivivens;s__Candidatus Faecivivens stercoripullorum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836027_bin.42_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836926 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4836926_bin.96_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836922 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Flavobacteriia;o__Flavobacteriales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836922_bin.11_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835993 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Ruthenibacterium sp.

characteristic: organism

text: uncultured Ruthenibacterium sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruthenibacterium;s__

text: multi-marker approach

text: Binned metagenome: ERR4835993_bin.40_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835996 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835996_bin.35_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836937 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Bifidobacterium pullorum

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: Bifidobacterium pullorum

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pullorum

text: multi-marker approach

text: Binned metagenome: ERR4836937_bin.27_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836957 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridium sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836957_bin.31_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836945 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: multi-marker approach

text: Binned metagenome: ERR4836945_bin.23_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836921 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Phascolarctobacterium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Phascolarctobacterium sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836921_bin.32_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836927 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridium sp.

characteristic: organism

text: uncultured Clostridium sp.

text: multi-marker approach

text: Binned metagenome: ERR4836927_bin.30_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836917 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Alistipes avicola

characteristic: project name

characteristic: sample derived from

text: Candidatus Alistipes avicola

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Candidatus Alistipes avicola

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836917_bin.8_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836951 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: [Clostridium] spiroforme

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: [Clostridium] spiroforme

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelatoclostridium;s__[Clostridium] spiroforme

text: multi-marker approach

text: Binned metagenome: ERR4836951_bin.34_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835991 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Ruminococcus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Ruminococcus sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835991_bin.2_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835870 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridium sp.

characteristic: organism

text: uncultured Clostridium sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__

text: multi-marker approach

text: Binned metagenome: ERR4835870_bin.23_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835858 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835858_bin.2_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836917 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Odoribacter splanchnicus

characteristic: organism

text: Odoribacter splanchnicus

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Odoribacter;s__Odoribacter splanchnicus

text: multi-marker approach

text: Binned metagenome: ERR4836917_bin.15_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836888 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Anaerotignum lactatifermentans

characteristic: project name

characteristic: sample derived from

text: Anaerotignum lactatifermentans

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerotignum;s__Anaerotignum lactatifermentans

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4836888_bin.46_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836963 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Bacilli bacterium

characteristic: organism

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).

text: uncultured Bacilli bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4836963_bin.92_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835858_bin.29_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4836884 of study ERP125074.

characteristic: description

text: Caecum

text: Spain

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Candidatus Fimenecus excrementavium

characteristic: organism

text: Candidatus Fimenecus excrementavium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__Candidatus Fimenecus;s__Candidatus Fimenecus excrementavium

text: multi-marker approach

text: Binned metagenome: ERR4836884_bin.9_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4835869 of study ERP125074.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridium sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4835869_bin.28_MetaWRAP_v1.1_bin