text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa, Limpopo

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: sub species Diarizonae

characteristic: serovar

characteristic: strain

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Anatum


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


characteristic: External Id

text: Anthony Smith, NICD

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text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

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characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Other

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text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

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text: South Africa, North West

text: Human, Urine

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text: Isangi


text: Anthony Smith, NICD

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characteristic: broker name

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

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text: sub species Salamae


text: Anthony Smith, NICD

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text: South Africa, Eastern Cape

text: Human, Blood culture

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characteristic: geographic location

text: Human, Stool

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text: Anthony Smith, NICD

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text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

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characteristic: organism

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

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text: South Africa, KwaZulu-Natal

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text: Anthony Smith, NICD

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text: EnteroBase

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text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

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text: Enteritidis

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text: Anthony Smith, NICD

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text: EnteroBase

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text: Human, Blood culture

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characteristic: title


text: Anthony Smith, NICD

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text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

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text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

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text: Anthony Smith, NICD

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text: EnteroBase

text: EnteroBase

text: South Africa, Mpumalanga

text: Human, Stool

text: Salmonella enterica

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text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Stool

text: Salmonella enterica

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text: Braenderup

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Bovismorbificans


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Rectal swab

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Hvittingfoss


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

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text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Isangi

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

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text: Typhimurium


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Poona


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Northern Cape

text: Human, Rectal swab

text: Salmonella enterica

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text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, KwaZulu-Natal

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: sub species Diarizonae

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Newport


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Agona


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Mpumalanga

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Northern Cape

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

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text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

text: Human, CSF

text: Salmonella enterica

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text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

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text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Irumu


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Agona


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

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text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Eastern Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Urine

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Stanleyville

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Bovismorbificans

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Umbilo


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, KwaZulu-Natal

text: Human, Rectal swab

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Newport


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Anatum


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, Limpopo

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Dublin


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

text: Human, Other

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Newport


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Chester


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Virchow

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Newport


characteristic: ENA-CHECKLIST

text: INRA

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: vaginal swab

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: vaginal metagenome

text: InSPIRe

characteristic: project name

text: vaginal metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Children’s Brain Tumour Research Centre, School of Medicine, Biodiscovery Institute, University of Nottingham, Nottingham, UK

text: ArrayExpress

characteristic: broker name

text: metastasized group 3 medulloblastoma

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Four 3-week hydrogel cultures of ONS-76 and HD-MB03 cells (pools of three gels per cell lines) were transferred into gentleMACS C tubes and processed using the Tumour Dissociation kit and the GentleMACS Dissociation programme (all Miltenyi Biotec) according to the manufacturer’s instructions. Dead cells and cell debris were removed from the resulting suspension of single cells using MS columns and the Dead Cell Removal Kit (both Miltenyi Biotec) according to the manufacturer’s instructions. Library preparation and sequencing were performed by the Deep Sequencing facility of the University of Nottingham. Briefly, single cell 3’ whole transcriptome sequencing libraries were prepared from dissociated cell suspensions using the Chromium Single Cell 3’ Library and Gel Bead Kit v2, the Chromium Single Cell A Chip Kit and the Chromium Multiplex Kit, 96 rxns (10X Genomics, Pleasanton, California, USA; PN-120267, PN-1000009 and PN-120262). Cell counts and viability estimates were obtained using the LUNA-II Automated Cell Counter (Logos Biosystems), Trypan Blue Stain, 0.4 % and Luna Cell Counting Slides (Logos Biosystems; T13001 and L12001). Live cell counts were used to calculate cell input, rather than total cell count, as visual inspection of cell field on the LUNA II and the gating histogram, showed that > 95 % of cells looked viable and that the cell counter appeared to be counting some extracellular debris as non-viable cells. Five thousand input cells were targeted per sample, with the aim of generating sequencing libraries from ~ 2,500 single cells. All steps, including GEM Generation and Barcoding, Post GEM-RT Cleanup and cDNA Amplification and Library Construction were performed according to the Chromium Single Cell 3’ Reagents Kits v2 User Guide, Rev D. Variable steps of this protocol included using 12 cycles of cDNA amplification and 10 cycles of library amplification. Amplified cDNA was quantified using the Qubit Fluorometer and the Qubit dsDNA HS Assay Kit (ThermoFisher Scientific; Q32854) and fragment length profiles were assessed using the Agilent 4200 TapeStation and Agilent High Sensitivity D5000 ScreenTape Assay (Agilent; 5067-5592 and 5067-5593). Completed sequencing libraries were quantified using the Qubit Fluorometer and the Qubit dsDNA HS Assay Kit and fragment length distributions assessed using the Agilent 4200 TapeStation and the High Sensitivity D1000 ScreenTape Assay (Agilent; 5067-5584, 5067-5585).

text: juvenile stage

characteristic: developmental stage

text: medulloblastoma

characteristic: disease

text: 3D hydrogel culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: cerebellum

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Children’s Brain Tumour Research Centre, School of Medicine, Biodiscovery Institute, University of Nottingham, Nottingham, UK

text: public

characteristic: Submitter Id

text: ArrayExpress

text: SHH-activated, TP53-wildtype

text: human

characteristic: description

text: juvenile stage

text: medulloblastoma

text: 3D hydrogel culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Center for Medical Genetics Gent Cancer Research Institute Gent

text: ArrayExpress

text: CLB-GA

text: neuroblast (sensu Vertebrata)

text: human

text: Protocols: 0.5M cells were harvested for CUT&RUN. CUT&RUN was performed using Cutana pA/G-MNase (Epicypher, 15-1016) according to the manufacturer’s protocol. Retrieved genomic DNA was purified with the MinElute PCR purification kit and eluted in 10 mL of buffer EB. Sequencing libraries were prepared with the automated Swift 2S system.

text: juvenile stage

text: neuroblastoma

text: bone marrow

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


text: Center for Medical Genetics Gent Cancer Research Institute Gent

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: CLB-GA

text: neuroblast (sensu Vertebrata)

text: human

text: juvenile stage

text: neuroblastoma

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


text: CENTER FOR EVOLUTIONARY HOLOGENOMICS

text: public

tag: Namespace:CENTER FOR EVOLUTIONARY HOLOGENOMICS

text: Atlantic salmon

characteristic: common name

text: Gut microbiome

text: Salmo salar

text: Salmo salar

text: Norwegian wild salmon metagenome


E-MTAB-11976_2:Sample 36

text: public

text: E-MTAB-11976_2:Sample 36

tag: Namespace:Division of Stem Cells and Cancer, German Cancer Research Center (DKFZ) and DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM gGmbH), 69120 Heidelberg, Germany

text: ArrayExpress

text: monocyte-like AML

characteristic: clinical information

text: human

text: Protocols: AML samples were collected from diagnostic peripheral blood (PB) aspirations at the University hospital in Heidelberg in accordance with the Declaration of Helsinki after obtaining written consent from each patient. The project was approved by the Ethics Committee of the Medical Faculty of Heidelberg (S-169/217). PB mononuclear cells (MNCs) were isolated by density gradient centrifugation using Ficoll Paque Plus (GE Healthcare, cat # GE17-1440-03), and stored in liquid nitrogen until further use. Primary AML cells were stained with a total of ten fluorescent cell surface antibodies (see supplementary table X). Cells were sorted into four populations according to CD11b, CD64 and GPR56 expression within the lineage-negative gate. Cells from each population and from lineage-neagtive bulk were sorted directly into RNA extraction buffer (Thermo Fisher, cat # KIT0214), snap-frozen and stored at -80 °C until RNA extraction. RNA extraction and purification of FACS-sorted cells was done using PicoPure RNA Isolation Kit according to manufacturer’s instructions (Thermo Fisher, cat # KIT0214). Whole transcriptome amplification was performed using a modified smart-seq2 protocol (Picelli et al 2014), with 5μl of a modified RT buffer containing 1× SMART First Strand Buffer (Takara Bio Clontech, cat # 639538), 1 mM dithiothreitol (Takara Bio Clontech), 1 μM template switching oligo (IDT), 10 U μl−1 SMARTScribe (Takara Bio Clontech, cat # 639538) and 1 U μl−1 RNasin Plus RNase Inhibitor (Promega, cat # N2615). Tagmentation of cDNA was done using Nextera XT DNA Library Preparation Kit (Illumina, cat # FC-121-1030).

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: leukemia stem cell-like

characteristic: phenotype

text: Homo sapiens

text: Sample 36


E-MTAB-11976_2:Sample 41

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Division of Stem Cells and Cancer, German Cancer Research Center (DKFZ) and DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM gGmbH), 69120 Heidelberg, Germany

text: public

text: E-MTAB-11976_2:Sample 41

characteristic: Submitter Id

text: ArrayExpress

text: monocyte-like AML

text: human

characteristic: description

text: adult

text: acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: leukemia stem cell-like

text: Homo sapiens

text: Sample 41

characteristic: title


E-MTAB-11976_2:Sample 49

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976_2:Sample 49

text: ArrayExpress

text: monocyte-like AML

text: human

text: adult

text: acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemia stem cell-like

text: Homo sapiens

text: Sample 49


E-MTAB-11976_2:Sample 39

text: public

text: E-MTAB-11976_2:Sample 39

text: ArrayExpress

characteristic: broker name

text: primitive-like AML

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemia stem cell-like

text: Homo sapiens

text: Sample 39


E-MTAB-11976_2:Sample 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11976_2:Sample 40

text: ArrayExpress

text: primitive-like AML

text: human

text: adult

text: acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: leukemia stem cell-like

characteristic: phenotype

text: Homo sapiens

text: Sample 40


E-MTAB-11976_2:Sample 48

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11976_2:Sample 48

characteristic: Submitter Id

text: ArrayExpress

text: primitive-like AML

text: human

characteristic: description

text: adult

text: acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: leukemia stem cell-like

text: Homo sapiens

text: Sample 48

characteristic: title


E-MTAB-11976_2:Sample 37

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976_2:Sample 37

text: ArrayExpress

characteristic: broker name

text: monocyte-like AML

characteristic: clinical information

text: human

text: adult

text: acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 37


E-MTAB-11976_2:Sample 50

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11976_2:Sample 50

text: ArrayExpress

text: monocyte-like AML

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 50


E-MTAB-11976_2:Sample 35

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11976_2:Sample 35

text: ArrayExpress

text: primitive-like AML

text: human

text: adult

text: acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: mature blast cell

characteristic: phenotype

text: Homo sapiens

text: Sample 35


E-MTAB-11976_2:Sample 38

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11976_2:Sample 38

characteristic: Submitter Id

text: ArrayExpress

text: primitive-like AML

text: human

characteristic: description

text: adult

text: acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 38

characteristic: title


E-MTAB-11976_2:Sample 45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976_2:Sample 45

text: ArrayExpress

characteristic: broker name

text: monocyte-like AML

characteristic: clinical information

text: human

text: adult

text: acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: non-leukemia stem cell

text: Homo sapiens

text: Sample 45


E-MTAB-11976_2:Sample 46

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11976_2:Sample 46

text: ArrayExpress

text: monocyte-like AML

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: non-leukemia stem cell

text: Homo sapiens

text: Sample 46


E-MTAB-11976_2:Sample 47

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11976_2:Sample 47

text: ArrayExpress

text: monocyte-like AML

text: human

text: adult

text: acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: non-leukemia stem cell

characteristic: phenotype

text: Homo sapiens

text: Sample 47


E-MTAB-11976_2:Sample 42

characteristic: INSDC last update

text: public

text: E-MTAB-11976_2:Sample 42

characteristic: Submitter Id

text: ArrayExpress

text: primitive-like AML

text: human

characteristic: description

text: adult

text: acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: non-leukemia stem cell

text: Homo sapiens

text: Sample 42

characteristic: title


E-MTAB-11976_2:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976_2:Sample 43

text: ArrayExpress

characteristic: broker name

text: primitive-like AML

text: human

text: adult

text: acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: non-leukemia stem cell

text: Homo sapiens

text: Sample 43


E-MTAB-11976_2:Sample 44

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11976_2:Sample 44

text: ArrayExpress

text: primitive-like AML

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: non-leukemia stem cell

text: Homo sapiens

text: Sample 44


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Department of Biological Sciences University of Bergen, Bergen, Norway

unit: year

characteristic: age

text: ArrayExpress

text: Atlantic cod

text: Protocols: A total of 5 males juvenile cod (G. morhua) were used for PCLS (n = 5/group). PCLS preparation and chemical exposure in the culture was performed as previously described (Yadetie et al., 2021 et al., 2021). Atlantic cod liver slices were cultured in 24-well plates in the growth medium containing DMSO (vehicle control) or EE2 (10 nM). For time response study, the slices were collected at 12, 24 and 48 h after exposure to DMSO control or 10nM EE2 in the culture. The slices were snap frozen in liquid nitrogen and stored at -80 °C for RNA extraction. RNA extraction was performed from a total of 30 samples comprising 6 groups (three time points with 10 nM EE2 and time-matched control groups, n = 5/group). RNA extraction was performed using TRIreagent following the manufacturers protocols (Sigma-Aldrich Oslo, Norway). Poly(A) pluss RNA sequenced on Illumina HiSeq 4000 system (50 million 2x75 bp paired-end option)at Genomic Core Facility, University of Bergen, Norway

text: juvenile stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Gadus morhua

text: Gadus morhua

text: liver

characteristic: organism part

text: Gadus morhua

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Biological Sciences University of Bergen, Bergen, Norway

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Atlantic cod

characteristic: description

text: juvenile stage

text: normal

text: wild type genotype

text: Gadus morhua

characteristic: organism

text: Gadus morhua

text: liver

text: Gadus morhua

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Biology Tuebingen

text: Pool of 150 individuals

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: 22C 16 h daytime.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Alopecurus myosuroides

text: blackgrass

characteristic: organism common name

text: vegetative

characteristic: plant developmental stage

text: Standard substrate (Pikiererde Typ CL P , Cat.No EN12580, Einheitserde)

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: diploid

characteristic: ploidy

characteristic: population

text: healthy

characteristic: sample health state

text: Alopecurus myosuroides

text: not provided

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Biology Tuebingen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Pool of 150 individuals

characteristic: description

text: Germany

text: not collected

text: not collected

text: glasshouse

text: 22C 16 h daytime.

text: Alopecurus myosuroides

characteristic: organism

text: blackgrass

text: vegetative

text: leaves

text: diploid

text: healthy

text: Alopecurus myosuroides

text: not provided

characteristic: title


text: public

characteristic: SRA accession

text: Pool of 100 individuals

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: 22C 16 h daytime.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Alopecurus myosuroides

text: blackgrass

characteristic: organism common name

text: vegetative

characteristic: plant developmental stage

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: diploid

text: healthy

text: Alopecurus myosuroides

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IAU CM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:IAU CM

text: semiarid

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: common name

text: Blood

text: blood

characteristic: environmental medium

text: Saudi Arabia

text: water scarcity

characteristic: local environmental context

text: Homo sapiens

text: Hydrocephalus

characteristic: project name

text: Homo sapiens

text: WES


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collection date

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


E-MTAB-12612:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

text: public

text: E-MTAB-12612:Sample 1

characteristic: age

text: ArrayExpress

text: S

characteristic: colon segment

text: human

characteristic: common name

text: Protocols: This validation study was performed on 41 cADNs, 18 SSLs, and their adjacent normal mucosa samples (total number of samples analyzed = 118). Colorectal tissues were prospectively collected during colonoscopies. Endoscopic biopsies from the tumor and the corresponding normal mucosa (located >2 cm from the tumor) were immersed in AllProtect Tissue Reagent (Qiagen, Hilden, Germany), held at 4°C overnight, and stored at -80°C. onors provided written consent to tissue collection, testing and data publications. Samples were numerically coded to protect donors' rights to confidentiality and privacy. The study was approved by the Zurich canton ethics committee. DNA extraction was performed with Qiagen AllPrep DNA/RNA mini kit (Hilden, Germany). DNA concentrations were quantified using Qubit fluorometer (Invitrogen, Carlsbad, USA) and quality was assessed with NanoDrop (ThermoFisher Scientific, Wilmington, USA). Genomic DNA (100ng) was bisulfite converted with EZ-DNA Methylation-Gold kit (Zymo, Irvine, USA) prior to library preparation which was performed with Accel-NGS Methyl-Seq DNA library kit (Swift Biosciences, Ann Arbor, USA). Eight indexed libraries were pooled in equimolar amounts for hybridization with baits. Hybridization of customized RNA baits with the pool of 8 libraries was performed twice at 63°C for 16 to 24 hours. AMPure Xp beads (Beckman Coulter Inc, Brea, USA) were used to isolate biotinylated DNA, and amplification of bead-bound enriched libraries was performed using the KAPA HiFi HotStart Ready Mix (KAPA Biosystems, Wilmington, MA, USA) and adaptor specific primers. The concentration of the enriched libraries was determined with a Qubit fluorometer, and library size with a Tapestation (Agilent, Santa Clara, CA, USA) for subsequent library titration and next generation sequencing.

text: adenoma

characteristic: disease

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TA

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 1

characteristic: title


E-MTAB-12612:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 10

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

text: human

characteristic: description

text: adenoma

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: normal tissue adjacent to pre-lesion (>2cm)

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-12612:Sample 100

text: UZH

text: public

text: E-MTAB-12612:Sample 100

text: ArrayExpress

text: D

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 100


E-MTAB-12612:Sample 101

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 101

text: ArrayExpress

text: C

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: maximum lesion diameter

text: SSL

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG 0-IIA

text: II

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 101

characteristic: title


E-MTAB-12612:Sample 102

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 102

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

text: female

text: Sample 102


E-MTAB-12612:Sample 103

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 103

text: ArrayExpress

text: T

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: maximum lesion diameter

text: SSL

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: LST-NG 0-IIB

characteristic: paris classification

text: II

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 103


E-MTAB-12612:Sample 104

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 104

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 104

characteristic: title


E-MTAB-12612:Sample 105

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 105

text: ArrayExpress

text: A

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: SSL

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: LST-NG 0-IIA

text: II

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 105


E-MTAB-12612:Sample 106

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 106

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 106


E-MTAB-12612:Sample 107

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 107

text: ArrayExpress

text: A

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: SSL

text: Homo sapiens

text: Homo sapiens

text: colon

text: II

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 107

characteristic: title


E-MTAB-12612:Sample 108

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 108

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 108


E-MTAB-12612:Sample 109

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 109

text: ArrayExpress

text: C

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: Dysplasia

characteristic: dysplasia

text: SSL

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: IIA

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 109


E-MTAB-12612:Sample 11

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: disease

text: LGD

characteristic: individual

characteristic: maximum lesion diameter

text: TA

text: Homo sapiens

text: Homo sapiens

text: colon

text: II-A (LST-G)

text: IV

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 11

characteristic: title


E-MTAB-12612:Sample 110

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 110

text: ArrayExpress

text: C

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 110


E-MTAB-12612:Sample 111

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 111

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: SSL

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG

characteristic: paris classification

text: II

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 111


E-MTAB-12612:Sample 112

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 112

text: ArrayExpress

text: T

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 112

characteristic: title


E-MTAB-12612:Sample 113

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 113

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: maximum lesion diameter

text: SSL

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: IIA (LST-G)

text: II

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 113


E-MTAB-12612:Sample 114

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 114

text: ArrayExpress

text: A

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 114


E-MTAB-12612:Sample 115

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 115

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

text: LGD

characteristic: dysplasia

characteristic: individual

text: SSL

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG

text: II

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 115

characteristic: title


E-MTAB-12612:Sample 116

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 116

text: ArrayExpress

text: A

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: female

text: Sample 116


E-MTAB-12612:Sample 117

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 117

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

text: Colon Sessile Serrated Adenoma/Polyp

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: SSL

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG 0-IIA

characteristic: paris classification

text: II

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 117


E-MTAB-12612:Sample 118

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 118

text: ArrayExpress

text: C

text: human

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 118

characteristic: title


E-MTAB-12612:Sample 12

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 12

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

characteristic: individual

text: normal

characteristic: microscopic appearance

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 12


E-MTAB-12612:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 13

text: ArrayExpress

text: C

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-NG

characteristic: paris classification

text: II

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 13


E-MTAB-12612:Sample 14

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 14

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 14

characteristic: title


E-MTAB-12612:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 15

text: ArrayExpress

text: A

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: microscopic appearance

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: IIA (LST-G)

text: IIIL

text: pre-lesion

text: Homo sapiens

text: female

text: Sample 15


E-MTAB-12612:Sample 16

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 16

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

characteristic: paris classification

text: normal

characteristic: pit pattern classification

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 16


E-MTAB-12612:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 17

text: ArrayExpress

text: A

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: IIA/IIC (LST-G)

text: IV/V

text: pre-lesion

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 17

characteristic: title


E-MTAB-12612:Sample 18

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 18

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: A

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 18


E-MTAB-12612:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 19

text: ArrayExpress

text: A

text: human

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: LST-G (0-IIA)

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 19


E-MTAB-12612:Sample 2

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: S

characteristic: colon segment

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: female

characteristic: sex

text: Sample 2

characteristic: title


E-MTAB-12612:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 20

text: ArrayExpress

text: A

text: human

text: adenoma

characteristic: individual

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: normal

text: normal

text: Homo sapiens

text: male

text: Sample 20


E-MTAB-12612:Sample 21

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 21

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: HGD

characteristic: dysplasia

characteristic: maximum lesion diameter

text: TVA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: IIA (LST-G)

characteristic: paris classification

text: IV

characteristic: pit pattern classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 21


E-MTAB-12612:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12612:Sample 22

text: ArrayExpress

text: C

text: human

characteristic: description

text: adenoma

characteristic: disease

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal

text: normal

text: Homo sapiens

characteristic: sequencing date

text: male

characteristic: sex

text: Sample 22

characteristic: title


E-MTAB-12612:Sample 23

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12612:Sample 23

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: C

characteristic: colon segment

text: human

characteristic: common name

text: adenoma

text: LGD

characteristic: dysplasia

characteristic: individual

characteristic: maximum lesion diameter

text: TA

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: IIA

text: IIIL

text: pre-lesion

text: Homo sapiens

text: male

text: Sample 23