text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #I100 collected at 3 months of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

tag: Namespace:University of Helsinki

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

characteristic: delivery mode

text: Stool sample Infant #I1002 collected at 3 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: week

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: infant born by vaginal delivery with intrapartum antibiotics

text: Stool sample Infant #I1007 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

characteristic: delivery mode

text: Stool sample Infant #I1002 collected at 6 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #I1007 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

text: Stool sample Infant #I1002 collected at 3 months of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: delivery mode

text: Stool sample Infant #I1007 collected at 3 months of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

text: Stool sample Infant #I1007 collected at 6 months of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #I1002 collected at 9 months of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

characteristic: delivery mode

text: Stool sample Infant #I1007 collected at 9 months of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #I1002 collected at 12 months of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

text: Stool sample Infant #I1007 collected at 12 months of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: delivery mode

text: Stool sample Infant #I1002 collected at 18 months of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

text: Stool sample Infant #I1007 collected at 18 months of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #I1002 collected at 24 months of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

characteristic: delivery mode

text: Stool sample Infant #I1007 collected at 24 months of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MRC-University of Glasgow Centre for Virus Research

text: sheep

characteristic: common name

text: Ovis aries

characteristic: organism

text: Ovis aries

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MRC-University of Glasgow Centre for Virus Research

text: public

text: sheep

text: Ovis aries

text: Ovis aries


E-MTAB-12052:Sample 1

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-12052:Sample 1

tag: Namespace:IOWA STATE UNIVERSITY

characteristic: Submitter Id

unit: year

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: Protocols: The set of reference tissues included a total of 40 tissues and 13 assays from two adult L1 cattle. Furthermore, samples from L1 fetuses/placentas (7 fetal tissues, 2 placental tissues, and 2 maternal tissues) were also collected. Tissues/cells were collected, snap-frozen in liquid nitrogen and stored at -80°C for the purpose of DNA and RNA extraction, ATAC-seq, and ChIP-seq processing. Please see: Zhou X, Li R, Michal JJ, Wu XL, Liu Z, Zhao H, Xia Y, Du W, Wildung MR, Pouchnik DJ, Harland RM, Jiang Z. Accurate Profiling of Gene Expression and Alternative Polyadenylation with Whole Transcriptome Termini Site Sequencing (WTTS-Seq). Genetics. 2016 Jun;203(2):683-97.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: duodenum

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 1


E-MTAB-12052:Sample 2

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 2

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: jejunum

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 2


E-MTAB-12052:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-12052:Sample 3

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: jejunum

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 3

characteristic: title


E-MTAB-12052:Sample 4

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-12052:Sample 4

text: L1 line Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: ovary

characteristic: organism part

text: ovarian section without corpus luteum

characteristic: sampling site

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: female

characteristic: sex

text: Sample 4


E-MTAB-12052:Sample 5

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 5

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: duodenum

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 5


E-MTAB-12052:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-12052:Sample 6

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: left lung lobe

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 6

characteristic: title


E-MTAB-12052:Sample 7

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 7

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: left lung lobe

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 7


E-MTAB-12052:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 8

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: ovary

text: ovarian section without corpus luteum

characteristic: sampling site

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 8


E-MTAB-12052:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-12052:Sample 10

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 10

characteristic: title


E-MTAB-12052:Sample 11

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 11

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: isthmus

characteristic: organism part

text: isthmus contralateral to corpus luteum

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: female

characteristic: sex

text: Sample 11


E-MTAB-12052:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 12

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: isthmus

text: isthmus contralateral to corpus luteum

characteristic: sampling site

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 12


E-MTAB-12052:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 14

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: esophagus

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 14

characteristic: title


E-MTAB-12052:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 15

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: tongue muscle

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 15


E-MTAB-12052:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 16

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: tongue muscle

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 16


E-MTAB-12052:Sample 17

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 17

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: rumen

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 17

characteristic: title


E-MTAB-12052:Sample 18

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 18

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: subcutaneous adipose tissue

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 18


E-MTAB-12052:Sample 19

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 19

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: longissimus muscle

text: longissimus dorsi

characteristic: sampling site

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 19


E-MTAB-12052:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 20

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: longissimus muscle

text: longissimus dorsi

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 20

characteristic: title


E-MTAB-12052:Sample 22

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 22

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: rumen

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 22


E-MTAB-12052:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 23

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: bladder organ

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 23


E-MTAB-12052:Sample 24

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 24

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: bladder organ

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 24

characteristic: title


E-MTAB-12052:Sample 25

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 25

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: gallbladder

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 25


E-MTAB-12052:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 26

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: hypothalamus

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 26


E-MTAB-12052:Sample 27

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 27

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: pituitary gland

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 27

characteristic: title


E-MTAB-12052:Sample 28

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 28

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: pituitary gland

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 28


E-MTAB-12052:Sample 29

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 29

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: hypothalamus

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 29


E-MTAB-12052:Sample 30

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 30

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: gallbladder

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 30

characteristic: title


E-MTAB-12052:Sample 31

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 31

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: cortex of kidney

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 31


E-MTAB-12052:Sample 32

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 32

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: cortex of kidney

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 32


E-MTAB-12052:Sample 33

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 33

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: Mother -fetus male 4

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 33

characteristic: title


E-MTAB-12052:Sample 34

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 34

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Bos taurus

text: Bos taurus

text: liver

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 34


E-MTAB-12052:Sample 35

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 35

unit: day

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

characteristic: organism

text: Bos taurus

text: placental caruncle

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 35


E-MTAB-12052:Sample 36

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 36

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 3

text: Bos taurus

text: Bos taurus

text: placental caruncle

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 36

characteristic: title


E-MTAB-12052:Sample 37

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 37

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mother -fetus male 3

characteristic: individual

text: Bos taurus

text: Bos taurus

text: mammary gland

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: female

characteristic: sex

text: Sample 37


E-MTAB-12052:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 39

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 1

text: Bos taurus

characteristic: organism

text: Bos taurus

text: brain

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 39


E-MTAB-12052:Sample 40

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 40

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

text: Bos taurus

text: brain

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 40

characteristic: title


E-MTAB-12052:Sample 41

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 41

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 3

characteristic: individual

text: Bos taurus

text: Bos taurus

text: brain

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 41


E-MTAB-12052:Sample 42

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 42

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus female 1

text: Bos taurus

characteristic: organism

text: Bos taurus

text: kidney

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 42


E-MTAB-12052:Sample 43

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 43

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 1

text: Bos taurus

text: Bos taurus

text: kidney

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 43

characteristic: title


E-MTAB-12052:Sample 44

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 44

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 2

characteristic: individual

text: Bos taurus

text: Bos taurus

text: kidney

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 44


E-MTAB-12052:Sample 45

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 45

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 3

text: Bos taurus

characteristic: organism

text: Bos taurus

text: kidney

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 45


E-MTAB-12052:Sample 46

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 46

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus female 1

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 46

characteristic: title


E-MTAB-12052:Sample 47

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 47

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 1

characteristic: individual

text: Bos taurus

text: Bos taurus

text: muscle

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 47


E-MTAB-12052:Sample 48

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 48

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

characteristic: organism

text: Bos taurus

text: muscle

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 48


E-MTAB-12052:Sample 49

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 49

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 3

text: Bos taurus

text: Bos taurus

text: muscle

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 49

characteristic: title


E-MTAB-12052:Sample 50

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 50

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 1

characteristic: individual

text: Bos taurus

text: Bos taurus

text: spleen

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 50


E-MTAB-12052:Sample 51

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 51

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

characteristic: organism

text: Bos taurus

text: spleen

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 51


E-MTAB-12052:Sample 52

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 52

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

text: Bos taurus

text: umbilical cord

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 52

characteristic: title


E-MTAB-12052:Sample 53

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 53

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 3

characteristic: individual

text: Bos taurus

text: Bos taurus

text: umbilical cord

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 53


E-MTAB-12052:Sample 54

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 54

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

characteristic: organism

text: Bos taurus

text: liver

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 54


E-MTAB-12052:Sample 55

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 55

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 3

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 55

characteristic: title


E-MTAB-12052:Sample 56

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 56

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus female 1

characteristic: individual

text: Bos taurus

text: Bos taurus

text: spleen

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: female

characteristic: sex

text: Sample 56


E-MTAB-12052:Sample 57

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 57

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus female 1

text: Bos taurus

characteristic: organism

text: Bos taurus

text: umbilical cord

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 57


E-MTAB-12052:Sample 58

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 58

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 1

text: Bos taurus

text: Bos taurus

text: umbilical cord

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 58

characteristic: title


E-MTAB-12052:Sample 59

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 59

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus female 1

characteristic: individual

text: Bos taurus

text: Bos taurus

text: placental cotyledon

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: female

characteristic: sex

text: Sample 59


E-MTAB-12052:Sample 60

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 60

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

characteristic: organism

text: Bos taurus

text: placental cotyledon

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 60


E-MTAB-12052:Sample 61

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 61

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 3

text: Bos taurus

text: Bos taurus

text: placental cotyledon

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 61

characteristic: title


E-MTAB-12052:Sample 62

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 62

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus female 1

characteristic: individual

text: Bos taurus

text: Bos taurus

text: gonad

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: female

characteristic: sex

text: Sample 62


E-MTAB-12052:Sample 63

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 63

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 1

text: Bos taurus

characteristic: organism

text: Bos taurus

text: gonad

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 63


E-MTAB-12052:Sample 64

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 64

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

text: Bos taurus

text: gonad

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 64

characteristic: title


E-MTAB-12052:Sample 65

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 65

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 3

characteristic: individual

text: Bos taurus

text: Bos taurus

text: gonad

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 65


E-MTAB-12052:Sample 66

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 66

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus female 1

text: Bos taurus

characteristic: organism

text: Bos taurus

text: heart

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 66


E-MTAB-12052:Sample 67

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 67

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 1

text: Bos taurus

text: Bos taurus

text: heart

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 67

characteristic: title


E-MTAB-12052:Sample 68

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 68

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 2

characteristic: individual

text: Bos taurus

text: Bos taurus

text: heart

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 68


E-MTAB-12052:Sample 69

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 69

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 3

text: Bos taurus

characteristic: organism

text: Bos taurus

text: heart

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 69


E-MTAB-12052:Sample 70

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 70

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus male 2

text: Bos taurus

text: Bos taurus

text: brain

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 70

characteristic: title


E-MTAB-12052:Sample 71

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 71

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 3

characteristic: individual

text: Bos taurus

text: Bos taurus

text: kidney

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 71


E-MTAB-12052:Sample 72

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 72

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 1

text: Bos taurus

characteristic: organism

text: Bos taurus

text: liver

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

text: Sample 72


E-MTAB-12052:Sample 73

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 73

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus female 1

text: Bos taurus

text: Bos taurus

text: muscle

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 73

characteristic: title


E-MTAB-12052:Sample 74

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 74

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Fetus male 3

characteristic: individual

text: Bos taurus

text: Bos taurus

text: spleen

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: male

characteristic: sex

text: Sample 74


E-MTAB-12052:Sample 75

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 75

text: L1 line Hereford

text: ArrayExpress

text: mid pregnancy

characteristic: clinical information

text: cattle

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: total 507-m*

text: Bos taurus

characteristic: organism

text: Bos taurus

text: mammary gland

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 75


E-MTAB-12052:Sample 76

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 76

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: late pregnancy

text: cattle

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: total 502-l

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 76

characteristic: title


E-MTAB-12052:Sample 77

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 77

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: cortex of kidney

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: Sample 77


E-MTAB-12052:Sample 78

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12052:Sample 78

text: L1 line Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: Fetus male 3

characteristic: individual

text: Bos taurus

characteristic: organism

text: Bos taurus

text: brain

text: Bos taurus

text: Ion PGM™ Sequencer

text: male

characteristic: sex

text: Sample 78


E-MTAB-12052:Sample 79

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12052:Sample 79

characteristic: Submitter Id

characteristic: age

text: L1 line Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Fetus female 1

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: Ion PGM™ Sequencer

text: female

text: Sample 79


E-MTAB-12052:Sample 80

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-12052:Sample 80

text: L1 line Hereford

text: ArrayExpress

text: cattle

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

characteristic: organism part

text: Bos taurus

text: Ion PGM™ Sequencer

characteristic: sequencing platform

text: Sample 80

characteristic: title


E-MTAB-11992:steroid 1 day 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11992:steroid 1 day 1

tag: Namespace:Department of Pathophysiology, Osaka Metropolitan University Graduate School of Medicine

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Female C57BL/6J mice were purchased from Charles River Laboratories At 7 weeks old, back hair was shaved and steroid (5 μg fluocinolone acetonide in 200 μl acetone) or vehicle were topically topically applied once every three days for 12 days and the skin samples were collected 1 day after the treatment. The back skin collected from mouse was immediately frozen in liquid nitrogen and was sliced into sections using a cryostat in order to promote the permeation of RNA isolation reagent. RNA was extracted using RNAiso Plus reagent (Takara). Libraries were prepared using a NEBNext Ultra II Directional RNA Library Prep Kit with the NEBNext Poly(A) mRNA Magnetic Isolation Module.

characteristic: description

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: steroid 1 day 1


E-MTAB-11992:steroid 2 day 1

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Pathophysiology, Osaka Metropolitan University Graduate School of Medicine

characteristic: INSDC center name

text: public

text: E-MTAB-11992:steroid 2 day 1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

text: steroid 2 day 1


E-MTAB-11992:steroid 3 day 1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-11992:steroid 3 day 1

text: ArrayExpress

text: house mouse

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Mus musculus

text: female

text: steroid 3 day 1


E-MTAB-11992:steroid 1 day 15

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11992:steroid 1 day 15

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

text: steroid 1 day 15

characteristic: title


E-MTAB-11992:steroid 2 day 15

text: public

text: E-MTAB-11992:steroid 2 day 15

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

characteristic: sex

text: steroid 2 day 15


E-MTAB-11992:steroid 3 day 15

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11992:steroid 3 day 15

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

characteristic: strain

text: steroid 3 day 15


E-MTAB-11992:steroid 1 day 30

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11992:steroid 1 day 30

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

text: steroid 1 day 30


E-MTAB-11992:steroid 2 day 30

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-11992:steroid 2 day 30

text: ArrayExpress

text: house mouse

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Mus musculus

text: female

text: steroid 2 day 30


E-MTAB-11992:steroid 3 day 30

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11992:steroid 3 day 30

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

text: steroid 3 day 30

characteristic: title


E-MTAB-11992:vehicle 1 day 1

text: public

text: E-MTAB-11992:vehicle 1 day 1

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

characteristic: sex

text: vehicle 1 day 1


E-MTAB-11992:vehicle 2 day 1

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11992:vehicle 2 day 1

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

characteristic: strain

text: vehicle 2 day 1


E-MTAB-11992:vehicle 3 day 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11992:vehicle 3 day 1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

text: vehicle 3 day 1


E-MTAB-11992:vehicle 1 day 15

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-11992:vehicle 1 day 15

text: ArrayExpress

text: house mouse

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Mus musculus

text: female

text: vehicle 1 day 15


E-MTAB-11992:vehicle 2 day 15

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11992:vehicle 2 day 15

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

text: vehicle 2 day 15

characteristic: title


E-MTAB-11992:vehicle 3 day 15

text: public

text: E-MTAB-11992:vehicle 3 day 15

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

characteristic: sex

text: vehicle 3 day 15


E-MTAB-11992:vehicle 1 day 30

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11992:vehicle 1 day 30

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

characteristic: strain

text: vehicle 1 day 30


E-MTAB-11992:vehicle 2 day 30

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11992:vehicle 2 day 30

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Mus musculus

text: female

text: vehicle 2 day 30


E-MTAB-11992:vehicle 3 day 30

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-11992:vehicle 3 day 30

text: ArrayExpress

text: house mouse

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Mus musculus

text: female

text: vehicle 3 day 30


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Umea university, Department of Molecular Biology

text: 7 to 13

text: ArrayExpress

text: house mouse

text: Protocols: For the experiments, animals (7- to 13-week-old, mixed gender) were either left untreated mock treated (PBS) or infected with LGTV. After sedation with ketamine (100 ug/g body weight) and xylazine (5 ug/g body weight) or Isoflurane, animals were intracranially inoculated with indicated dose of LGTV or LGTV-GFP suspended in 20 uL PBS. After euthanasia (day 5 for WT and day 3 for Ifnar-/-), brains were collected in cold Hibernate A GlutaMAX medium (Thermo Fisher) without cardiac perfusion. Single nuclei were isolated from the cerebral cortex of WT and Ifnar-/- mice using the protocol modified from Gaublomme et al 2019 (PMID: 31266958). Cerebral cortexes from the hemisphere that did not receive needle injection from one male and one female mouse were manually dissected without cardiac perfusion and homogenized in lysis buffer (10 mM Tris pH 7.4, 146 mM NaCl, 1 mM CaCl2, 21 mM MaCl2, 0.1% NP40 and 40 U/ml RNase inhibitor) using Dounce homogenizer for 10-20 times. Brain homogenates were washed with wash buffer (10mM Tris pH 7.4, 146 mM NaCl, 1mM CaCl2, 21 mM MaCl2, 0.01% BSA and 40 U/ml RNase inhibitor) and filter through 20 µm pre-separation filters (Miltenyi Biotec, 130-041-407). The homogenates were centrifuged with a swing bucket at 500xg, 4oC for 5 min. The supernatant was removed, stain buffer (10 mM Tris pH 7.4, 146 mM NaCl, 1 mM CaCl2, 21 mM MaCl2, 2% BSA and 40 U/ml RNase inhibitor) was added. The resuspended cells were filtered again and the homogenates from one male and one female were mixed. Nuclei were counted by hemocytometer and diluted in the staining buffer to 2 x 106 nuclei/ml. Nuclei were stained with 10 µg/ml DAPI and subjected to sorting from cell debris using FACS (BD FACSAria III). The gate was set to sort for DAPI positive population (FSC 302, SSC 313 and BV421 313(log). The flow rate was adjusted to 2-6 to maintain about 10 nl/nuclei and with 80% efficiency. Sorted nuclei were transferred into low binding tubes and centrifuged using a swing bucket at 500xg, 4oC for 5 min. The overall quality of sorted nuclei was assessed under a microscope. Overall, 80% viable nuclei were then diluted for single cell RNAseq processing, using 10x Genomics 3’ v2 kit according to manufacturer’s instructions. 10x Genomics 3’ v2 kit according to manufacturer’s instructions 10x Genomics 3’ v2 kit according to manufacturer’s instructions

text: adult

characteristic: developmental stage

text: wild type genotype

text: A

characteristic: individual

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Umea university, Department of Molecular Biology

text: public

text: 7 to 13

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Ifnar -/-

text: B

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: 7 to 13

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: wild type genotype

text: C

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 7 to 13

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

characteristic: genotype

text: D

text: Langat virus (strain TP21)

characteristic: infect

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: SRA accession

text: 7 to 13

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

text: E

characteristic: individual

text: Langat virus (strain TP21)

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: 7 to 13

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: Ifnar -/-

text: F

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 7 to 13

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: Ifnar -/-

characteristic: genotype

text: G

text: Langat virus (strain TP21)

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

characteristic: SRA accession

tag: Namespace:CENTER FOR GENOMIC REGULATION (CRG)

text: IVT1PfLysUUU(5%)_IVT2DmSerGCU(9%)_IVT3DmmitAlaUGC(20%)_IVT4EcSerGCU(15%)_IVT5NcThrAGU(3%)_IVT6SpSerUGA(11%)_IVT7HsGlyACC(17%)_IVT8HsmitSerGCU(13%)_IVT9HsGlyCCC(7%)_StrategyA

text: synthetic construct

text: synthetic construct


characteristic: ENA-CHECKLIST

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: IVT3DmmitAlaUGC(15.5%)_IVT5NcThrAGU(18%)_IVT6SpSerUGA(35.5%)_IVT9HsGlyCCC(31%)_Strategy_B

text: synthetic construct

text: synthetic construct

characteristic: title


text: CENTER FOR GENOMIC REGULATION (CRG)

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: IVT3DmmitAlaUGC(33.33%)_IVT6SpSerUGA(33.3%)_ScPhe(33.33%)_NanotRNAseq(3'RNAadapter)

characteristic: description

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


characteristic: ENA-LAST-UPDATE

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_NanotRNAseq(3'RNAadapter)_without_reverse_transcription

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

characteristic: INSDC first public

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_NanotRNAseq(3'RNAadapter)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

characteristic: INSDC last update

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_NanotRNAseq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

characteristic: INSDC status

text: baker's yeast

text: Saccharomyces_cerevisiae_Pus4_knockout(BY4741_MATa_pus4::KAN)_tRNAs_NanotRNAseq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_heatstress(45degC_1h)_NanotRNAseq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: 10_NanotRNAseq_Oxidativestressyeast_rep1

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_oxidativestress(2mM_H202_1h)_NanotRNAseq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_NanotRNAseq_replicate2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_Pus4_knockout(BY4741_MATa_pus4::KAN)_tRNAs_NanotRNAseq_replicate2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_heatstress(45degC_1h)_NanotRNAseq_replicate2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: 14_NanotRNAseq_Oxidativestressyeast_rep2

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_oxidativestress(2mM_H202_1h)_NanotRNAseq_replicate2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

tag: Namespace:University of Veterinary Medicine Vienna

text: horse

text: Mongolian horse

text: Equus caballus

text: Equus caballus

text: BW-297 male horse specimen


text: University of Veterinary Medicine Vienna

text: public

text: horse

text: Mongolian horse

text: Equus caballus

text: Equus caballus

text: BW-309 male horse specimen


text: public

text: horse

text: Mongolian horse

text: Equus caballus

text: Equus caballus

text: BW-311 male horse specimen


text: public

text: horse

text: Mongolian horse

text: Equus caballus

text: Equus caballus

text: BW-313 male horse specimen


text: public

text: horse

text: Mezen Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_03_094 male horse specimen


text: public

text: horse

text: Mezen Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_03_095 male horse specimen


text: public

text: horse

text: Orlov Trotter

text: Equus caballus

text: Equus caballus

text: Y_PR_03_114 male horse specimen


text: public

text: horse

text: Kyrgyzstan Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_04_001 male horse specimen


text: public

text: horse

text: Kyrgyzstan Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_04_006 male horse specimen


text: public

text: horse

text: Kyrgyzstan Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_04_011 male horse specimen


text: public

text: horse

text: Kyrgyzstan Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_04_025 male horse specimen


text: public

text: horse

text: Kyrgyzstan Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_04_028 male horse specimen


text: public

text: horse

text: Kyrgyzstan Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_04_029 male horse specimen


text: public

text: horse

text: Arabian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_05_013 male horse specimen


text: public

text: horse

text: Caspian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_05_202 male horse specimen


text: public

text: horse

text: Cleveland Bay

text: Equus caballus

text: Equus caballus

text: Y_PR_09_060 male horse specimen


text: public

text: horse

text: Shire Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_09_091 male horse specimen


text: public

text: horse

text: Estonian Native Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_11_050 male horse specimen


text: public

text: horse

text: Trotter

text: Equus caballus

text: Equus caballus

text: Y_PR_11_240 male horse specimen


text: public

text: horse

text: Chilean Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_12_001 male horse specimen


text: public

text: horse

text: Chilean Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_12_006 male horse specimen


text: public

text: horse

text: Chilean Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_12_009 male horse specimen


text: public

text: horse

text: Criollo

text: Equus caballus

text: Equus caballus

text: Y_PR_12_011 male horse specimen


text: public

text: horse

text: Paso Peruano

text: Equus caballus

text: Equus caballus

text: Y_PR_12_024 male horse specimen


text: public

text: horse

text: Mangalarga Marchador

text: Equus caballus

text: Equus caballus

text: Y_PR_12_071 male horse specimen


text: public

text: horse

text: Fort Polk Feral Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_12_089 male horse specimen


text: public

text: horse

text: Colombian Trocha and Trot Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_12_105 male horse specimen


text: public

text: horse

text: Exmoor Pony

text: Equus caballus

text: Equus caballus

text: Y_PR_13_038 male horse specimen


text: public

text: horse

text: Eriskay pony

text: Equus caballus

text: Equus caballus

text: Y_PR_13_043 male horse specimen


text: public

text: horse

text: Fell Pony

text: Equus caballus

text: Equus caballus

text: Y_PR_13_056 male horse specimen


text: public

text: horse

text: Fredriksborg Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_14_068 male horse specimen


text: public

text: horse

text: Barb Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_14_120 male horse specimen


text: public

text: horse

text: Barb Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_14_191 male horse specimen


text: public

text: horse

text: Myanmar Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_001 male horse specimen


text: public

text: horse

text: Myanmar Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_003 male horse specimen


text: public

text: horse

text: Kazakh Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_026 male horse specimen


text: public

text: horse

text: Laos Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_046 male horse specimen


text: public

text: horse

text: Nepal Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_092 male horse specimen


text: public

text: horse

text: Japanese Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_104 male horse specimen


text: public

text: horse

text: Japanese Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_144 male horse specimen


text: public

text: horse

text: Japanese Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_145 male horse specimen


text: public

text: horse

text: Japanese Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_146 male horse specimen


text: public

text: horse

text: Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_203 male horse specimen


text: public

text: horse

text: Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_209 male horse specimen


text: public

text: horse

text: Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_213 male horse specimen


text: public

text: horse

text: Philippines Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_221 male horse specimen


text: public

text: horse

text: Philippines Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_225 male horse specimen


text: public

text: horse

text: Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_235 male horse specimen


text: public

text: horse

text: Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_294 male horse specimen


text: public

text: horse

text: Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_295 male horse specimen


text: public

text: horse

text: Inner Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_305 male horse specimen


text: public

text: horse

text: Inner Mongolian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_15_306 male horse specimen


text: public

text: horse

text: Icelandic Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_18_005 male horse specimen


text: public

text: horse

text: Icelandic Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_18_014 male horse specimen


text: public

text: horse

text: Icelandic Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_18_037 male horse specimen


text: public

text: horse

text: Skyros Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_191 male horse specimen


text: public

text: horse

text: Skyros Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_195 male horse specimen


text: public

text: horse

text: Skyros Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_196 male horse specimen


text: public

text: horse

text: Rhodes Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_213 male horse specimen


text: public

text: horse

text: Hucul Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_261 male horse specimen


text: public

text: horse

text: Nigerian Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_431 male horse specimen


text: public

text: horse

text: Pakistan Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_440 male horse specimen


text: public

text: horse

text: Shackleford Banks Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_455 male horse specimen


text: public

text: horse

text: Shackleford Banks Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_467 male horse specimen


text: public

text: horse

text: Corolla

text: Equus caballus

text: Equus caballus

text: Y_PR_19_475 male horse specimen


text: public

text: horse

text: Corolla

text: Equus caballus

text: Equus caballus

text: Y_PR_19_478 male horse specimen


text: public

text: horse

text: Zemaitukai

text: Equus caballus

text: Equus caballus

text: Y_PR_19_496 male horse specimen


text: public

text: horse

text: Zemaitukai

text: Equus caballus

text: Equus caballus

text: Y_PR_19_509 male horse specimen


text: public

text: horse

text: Lithuanian Heavy Draft

text: Equus caballus

text: Equus caballus

text: Y_PR_19_515 male horse specimen


text: public

text: horse

text: Navajo Nation Department of Agriculture Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_527 male horse specimen


text: public

text: horse

text: Theodore Roosevelt National Park Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_542 male horse specimen


text: public

text: horse

text: Newfoundland Pony

text: Equus caballus

text: Equus caballus

text: Y_PR_19_624 male horse specimen


text: public

text: horse

text: Choctaw

text: Equus caballus

text: Equus caballus

text: Y_PR_19_664 male horse specimen


text: public

text: horse

text: Ojibwe - Lac La Croix Indian Pony

text: Equus caballus

text: Equus caballus

text: Y_PR_19_695 male horse specimen


text: public

text: horse

text: Hucul Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_811 male horse specimen


text: public

text: horse

text: Hucul Horse

text: Equus caballus

text: Equus caballus

text: Y_PR_19_815 male horse specimen


text: EMBL

text: public

text: house mouse

text: jejunum of mice treated with LpWJL

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: house mouse

text: jejunum of mice treated with placebo

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:Ludwig-Maximilians-Universitat Munchen Department of Pharmacy

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: HepG2 cells (DSMZ) were cultured in DMEM, high glucose supplemented with 10% fetal calf serum (FCS), sodium pyruvate (1 mM), penicillin (100 U/mL), and streptomycin (100 µg/mL) at 37 °C and 5% CO2 and seeded in 6-well plates (1.0×106 cells/well). At 24 h after seeding, the medium was replaced with minimal essential medium (MEM) containing 1% charcoal-stripped FCS, penicillin (100 U/mL), and streptomycin (100 µg/mL). After 48 h, the medium was again exchanged for MEM with the same additives as before, additionally containing 0.1% DMSO and compound 2 (20 µM) or 0.1% DMSO alone as a control. Each treatment was performed in four biologically independent samples (n = 4). After 12 h incubation, total RNA was extracted. Cells were harvested, washed twice with cold phosphate buffered saline (PBS), and used for RNA extraction with the E.Z.N.A.® Total RNA Kit I (R6834-02, Omega-Bio-Tek Inc., Norcross, GA, USA). A total amount of 1 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® Ultra TM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. Briefly, mRNA was purified from total RNA using poly-T oligo-attached magnetic beads. Fragmentation was carried out using divalent cations under elevated temperature in NEBNext First Strand Synthesis Reaction Buffer (5X). First strand cDNA was synthesized using random hexamer primer and M-MuLV Reverse Transcriptase (RNase H). Second strand cDNA synthesis was subsequently performed using DNA Polymerase I and RNase H. Remaining overhangs were converted into blunt ends via exonuclease/polymerase activities. After adenylation of 3’ ends of DNA fragments, NEBNext Adaptor with hairpin loop structure were ligated to prepare for hybridization. In order to select cDNA fragments of preferentially 150~200 bp in length, the library fragments were purified with AMPure XP system (Beckman Coulter, Beverly, USA). Then 3 µL USER Enzyme (NEB, USA) was used with size-selected, adaptor-ligated cDNA at 37 °C for 15 min followed by 5 min at 95 °C before PCR. Then PCR was performed with Phusion High-Fidelity DNA polymerase, Universal PCR primers and Index (X) Primer. At last, PCR products were purified (AMPure XP system) and library quality was assessed on the Agilent Bioanalyzer 2100 system. The clustering of the index-coded samples was performed on a cBot Cluster Generation System using PE Cluster Kit cBot-HS (Illumina) according to the manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: hepatocellular carcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Ludwig-Maximilians-Universitat Munchen Department of Pharmacy

text: public

text: ArrayExpress

text: human

text: adult

text: hepatocellular carcinoma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SLU

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:841-169164

text: V. longisporum mycelia overexpression mutant for an enzymatically inactive version of VLSPLA2

text: Verticillium longisporum

text: Verticillium longisporum

characteristic: title


text: SLU

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:841-169165

characteristic: Submitter Id

text: Verticillium longisporum

text: Verticillium longisporum


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:841-169166

characteristic: description

text: Verticillium longisporum

characteristic: organism

text: Verticillium longisporum


characteristic: ENA-LAST-UPDATE

text: SLU

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:841-169167

text: V. longisporum WT mycelia

text: Verticillium longisporum

text: Verticillium longisporum


text: SLU

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:841-169168

text: V. longisporum WT mycelia

text: Verticillium longisporum

text: Verticillium longisporum


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:841-169169

text: V. longisporum WT mycelia

text: Verticillium longisporum

text: Verticillium longisporum


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169170

text: V. longisporum mycelia overexpression mutant for VLSPLA2

text: Verticillium longisporum

text: Verticillium longisporum


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169171

text: Verticillium longisporum

text: Verticillium longisporum


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169172

text: Verticillium longisporum

text: Verticillium longisporum


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169173

text: Nicotiana benthamiana inoculated with the empty vector

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169174

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169175

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169176

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169177

text: Nicotiana benthamiana heterologously expressing gene VLSPLA2 from isolate VL1 of Verticillium longisporum, 48 hours after inoculation

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169178

text: Nicotiana benthamiana heterologously expressing gene VLSPLA2 from isolate VL1 of Verticillium longisporum, 72 hours after inoculation

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169179

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169180

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169181

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169182

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169183

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169184

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169185

text: Nicotiana benthamiana heterologously expressing an enzymatically inactive version of VLSPLA2 from isolate VL1 of Verticillium longisporum, 48 hours after inoculation

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169186

text: Nicotiana benthamiana heterologously expressing an enzymatically inactive version of VLSPLA2 from isolate VL1 of Verticillium longisporum, 72 hours after inoculation

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169187

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169188

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169189

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169190

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169191

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: SLU

text: public

text: ena-SAMPLE-TAB-16-09-2022-10:12:51:842-169192

text: Nicotiana benthamiana

text: Nicotiana benthamiana


text: public

tag: Namespace:National Institute of Biomedical genomics

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: National Institute of Biomedical genomics

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Portugal

characteristic: Country

text: public

text: Sensitive

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Portugal

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: Other

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Portugal

text: public

text: Sensitive

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_Pus4_knockout(BY4741_MATa_pus1::KAN)_tRNAs_NanotRNAseq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_Pus4_knockout(BY4741_MATa_pus7::KAN)_tRNAs_NanotRNAseq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_BY4741_tRNAs_HydraPsiSeq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: baker's yeast

text: Saccharomyces_cerevisiae_Pus4_knockout(BY4741_MATa_pus4::KAN)_tRNAs_HydraPsiSeq_replicate1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

tag: Namespace:Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences

text: human

text: Single-stranded and double-stranded libraries were prepared for this sample; Sampled from bones and petrous

text: Homo sapiens

text: Homo sapiens


text: Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences

text: public

text: human

text: Single-stranded libraries were prepared for this sample

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Double-stranded libraries were prepared for this sample

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Single-stranded and double-stranded libraries were prepared for this sample

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Double-stranded libraries were prepared for this sample; Sampled from bone and tooth

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Double-stranded libraries were prepared for this sample; Sampled from tooth and petrous

text: Homo sapiens

text: Homo sapiens


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-20-09-2022-10:57:30:480-166540

tag: Namespace:Hospital General Universitario Gregorio Maranon

text: HGUGM

characteristic: collecting institution

text: HGUGM

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: Human

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Hospital General Universitario Gregorio Maranon

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-20-09-2022-10:57:30:481-166541

characteristic: Submitter Id

text: HGUGM

text: HGUGM

text: Spain

text: Human

text: Human

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-20-09-2022-10:57:30:481-166542

text: HGUGM

text: HGUGM

text: Spain

text: Human

text: Human

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-20-09-2022-10:57:30:481-166543

text: HGUGM

characteristic: collecting institution

text: HGUGM

characteristic: collector name

text: Spain

text: Human

text: Human