characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360677 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360677_bin.1_MetaWRAP_v1.3_bin


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358576 of study ERP136460.

characteristic: description

text: Gut

text: Norway

unit: DD

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa

text: multi-marker approach

text: Binned metagenome: ERR9358576_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360726 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360726_bin.2_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360666 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Pseudomonas sp.

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9360666_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360663 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360663_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358645 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358645_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358530 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358530_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360704 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Pseudomonas sp.

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

text: multi-marker approach

text: Binned metagenome: ERR9360704_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360662 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360662_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360692 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Aeromonas sobria

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Aeromonas sobria

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Aeromonadales;f__Aeromonadaceae;g__Aeromonas;s__Aeromonas sobria

text: multi-marker approach

text: Binned metagenome: ERR9360692_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358570 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358570_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360726 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: Pseudomonas aeruginosa

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9360726_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360680 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: Pseudomonas aeruginosa

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: Pseudomonas aeruginosa

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9360680_bin.2_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9360711 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR9360711_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: not provided

text: MetaWRAP v1.3

text: Salmon digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358605 of study ERP136460.

text: Gut

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: fish gut metagenome

text: Digestive tube

characteristic: local environmental context

text: fish gut metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

text: HoloFood Salmon - Trial C Metagenome

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR9358605_bin.1_MetaWRAP_v1.3_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Salmon digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR9358559 of study ERP136460.

characteristic: description

text: Gut

text: Norway

text: metagenome-assembled genome

text: fish gut metagenome

text: Digestive tube

text: fish gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: HoloFood Salmon - Trial C Metagenome

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Binned metagenome: ERR9358559_bin.1_MetaWRAP_v1.3_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)

text: Paolo Pastorino

text: Italy

characteristic: geographic location (region and locality)

text: Trota iridea

text: Lactococcus garvieae 21881

text: Lactococcus garvieae 21881


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)

characteristic: INSDC center name

text: public

text: Paolo Pastorino

text: Italy

text: Trota iridea

text: Lactococcus garvieae 21881

text: Lactococcus garvieae 21881


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Cornell University

text: Evan Long

text: Fresh young leaves from Buckler lab clone MIA 8875

text: India

characteristic: geographic location (country and/or sea)

text: Greenhouse, Cornell Univeristy

characteristic: growth facility

text: GRIN

text: Mallotus nudiflorus

text: soil

characteristic: plant growth medium

text: Fresh leaves

characteristic: plant structure

text: Buckler lab, Cornell Univeristy

characteristic: sample storage location

text: Mallotus nudiflorus

text: Clone from Buckler collection. Grow from seed from MIA 8875

characteristic: source material description

text: MIA 8875

characteristic: source material identifiers

text: MIA 8875


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: SRA accession

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: United Kingdom

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Clinical samples

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes

text: emm 1.0

characteristic: serovar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Oxford

text: draft WGS

text: Cameroon

text: diseased

characteristic: host health state

text: Homo sapiens

text: urethra

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae NG31052019


text: University of Oxford

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: draft WGS

text: Cameroon

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: endocervix

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae NG27082019


text: University of Oxford

text: public

characteristic: collection date

text: draft WGS

characteristic: description

text: Cameroon

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: urethra

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae NG20042303


text: University of Oxford

text: public

text: draft WGS

text: Cameroon

text: diseased

text: Homo sapiens

characteristic: isolate

text: urethra

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae NG14112003


characteristic: ENA-CHECKLIST

text: University of Oxford

text: public

text: draft WGS

text: Cameroon

text: diseased

text: Homo sapiens

text: endocervix

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae NG14112002

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Oxford

text: public

text: draft WGS

text: Cameroon

text: diseased

text: Homo sapiens

text: urethra

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae NG13112001


characteristic: External Id

text: The University of Queensland

characteristic: INSDC center name

text: public

tag: Namespace:The University of Queensland

text: Canine nose

characteristic: broad-scale environmental context

text: Canine nasal samples

text: Canine nose

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Canine nose

characteristic: local environmental context

text: canine metagenome

text: Canine nasal microbiota

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text: soil metagenome

text: soil metagenome

text: BTEXIeIa


BTEXIeN

text: ETE-WUR

text: public

text: BTEXIeN

text: BTEXIeN

text: soil metagenome

text: soil metagenome

text: BTEXIeN


BTEXIaN

text: ETE-WUR

text: public

text: BTEXIaN

text: BTEXIaN

text: soil metagenome

text: soil metagenome

text: BTEXIaN


BTEXIeIaN

text: ETE-WUR

text: public

text: BTEXIeIaN

text: BTEXIeIaN

text: soil metagenome

text: soil metagenome

text: BTEXIeIaN


text: Teagasc Food Research Centre

text: public

tag: Namespace:Teagasc Food Research Centre

text: Marine Institute, Ireland

text: human

characteristic: common name

text: FM11 prepared with SuperScript II and AmpliTaq Gold

text: No

text: Ireland

characteristic: geographic location (country and/or sea)

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM12 prepared with SuperScript II and AmpliTaq Gold

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM18 prepared with SuperScript II and AmpliTaq Gold

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM22 prepared with SuperScript II and AmpliTaq Gold

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM23 prepared with SuperScript II and AmpliTaq Gold

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM26 prepared with SuperScript II and AmpliTaq Gold

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM11 prepared with SuperScript II and Kapa HiFi

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM12 prepared with SuperScript II and Kapa HiFi

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM18 prepared with SuperScript II and Kapa HiFi

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM23 prepared with SuperScript II and Kapa HiFi

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


NEGAMPLITAQ

text: Teagasc Food Research Centre

text: public

text: NEGAMPLITAQ

text: negative control (MGB water) prepared with SuperScript II and AmpliTaq Gold

text: No

text: Molecular grade biology water

text: mixed RNA library

text: mixed RNA library

text: negative control


NEGKAPA-HIFI

text: Teagasc Food Research Centre

text: public

text: NEGKAPA-HIFI

text: negative control (MGB water) prepared with SuperScript II and Kapa HiFi

text: No

text: Molecular grade biology water

text: mixed RNA library

text: mixed RNA library

text: negative control


NEGKAPA-ROBUST

text: Teagasc Food Research Centre

text: public

text: NEGKAPA-ROBUST

text: negative control (MGB water) prepared with SuperScript II and Kapa Robust

text: No

text: Molecular grade biology water

text: mixed RNA library

text: mixed RNA library

text: negative control


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM11 prepared with SuperScript II and Kapa Robust

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM12 prepared with SuperScript II and Kapa Robust

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM18 prepared with SuperScript II and Kapa Robust

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM22 prepared with SuperScript II and Kapa Robust

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM23 prepared with SuperScript II and Kapa Robust

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: human

text: FM26 prepared with SuperScript II and Kapa Robust

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 10 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 11 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 2 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 1 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 3 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 4 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 5 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 6 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 7 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 8 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 9 prepared with SuperScriptII and AmpliTaq Gold

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


AG-NEG

text: Teagasc Food Research Centre

text: public

text: AG-NEG

text: Marine Institute, Ireland

text: negative control prepared with SuperScriptII and AmpliTaq Gold

text: No

text: mixed RNA library

text: mixed RNA library

text: negative control


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 10 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 11 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 12 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 1 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 2 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 3 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 4 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 5 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 6 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 7 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 8 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 9 prepared with SuperScriptII and Kapa HiFi

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


KH-NEG

text: Teagasc Food Research Centre

text: public

text: KH-NEG

text: Marine Institute, Ireland

text: negative control prepared with SuperScriptII and Kapa HiFi

text: No

text: mixed RNA library

text: mixed RNA library

text: negative control


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 10 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 11 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 12 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 1 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 2 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 3 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 4 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 5 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 6 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 7 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 8 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster sample 9 prepared with SuperScriptII and Kapa Robust

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


KR-NEG

text: Teagasc Food Research Centre

text: public

text: KR-NEG

text: Marine Institute, Ireland

text: negative control prepared with SuperScriptII and Kapa Robust

text: No

text: mixed RNA library

text: mixed RNA library

text: negative control


text: Teagasc Food Research Centre

text: public

text: European Union Reference Laboratory (EURL) for Foodborne Viruses, National Food Agency, Hamnesplanaden 5, 753 19 Uppsala, Sweden.

text: Naturally contaminated oyster prepared with SuperScript II and AmpliTaq Gold, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and AmpliTaq Gold, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and AmpliTaq Gold, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa Robust, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa Robust, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and Kapa Robust, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa HiFi, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa HiFi, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and Kapa HiFi, pooled GI/GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript II and AmpliTaq Gold, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster prepared with SuperScript II and AmpliTaq Gold, pooled GI/GII products, pooled GI/GII PCR products

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript IV and AmpliTaq Gold, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with LunaScript and AmpliTaq Gold, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and AmpliTaq, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and AmpliTaq, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and AmpliTaq, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript II and AmpliTaq Gold, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript IV and AmpliTaq Gold, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with LunaScript and AmpliTaq Gold, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: European Union Reference Laboratory (EURL) for Foodborne Viruses, National Food Agency, Hamnesplanaden 5, 753 19 Uppsala, Sweden.

text: Naturally contaminated oyster prepared with SuperScript II and AmpliTaq Gold, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and AmpliTaq Gold, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster prepared with SuperScript IV and AmpliTaq Gold, pooled GI/GII PCR products

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and AmpliTaq Gold, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript II and Kapa Robust, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript IV and Kapa Robust, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with LunaScript and Kapa Robust, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa Robust, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa Robust, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and Kapa Robust, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript II and Kapa Robust, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript IV and Kapa Robust, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with LunaScript and Kapa Robust, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster prepared with LunaScript and AmpliTaq Gold, pooeled GI/GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa Robust, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa Robust, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: European Union Reference Laboratory (EURL) for Foodborne Viruses, National Food Agency, Hamnesplanaden 5, 753 19 Uppsala, Sweden.

text: Naturally contaminated oyster prepared with LunaScript and Kapa Robust, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript II and Kapa HiFi, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript IV and Kapa HiFi, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with LunaScript and Kapa HiFi, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa HiFi, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and Kapa HiFi, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript II and Kapa HiFi, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oyster prepared with SuperScript II and Kapa Robust, pooled GI/GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with SuperScript IV and Kapa HiFi, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate B in spiked oyster prepared with LunaScript and Kapa HiFi, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa HiFi, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript II and AmpliTaq Gold, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript IV and AmpliTaq Gold, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with LunaScript and AmpliTaq Gold, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and AmpliTaq Gold, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oysters prepared with SuperScript IV and Kapa Robust, pooled GI/GII PCR products

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: European Union Reference Laboratory (EURL) for Foodborne Viruses, National Food Agency, Hamnesplanaden 5, 753 19 Uppsala, Sweden.

text: Naturally contaminated oyster prepared with LunaScript and AmpliTaq Gold, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript II and AmpliTaq Gold, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript IV and AmpliTaq Gold, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with LunaScript and AmpliTaq Gold, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and AmpliTaq Gold, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and AmpliTaq Gold, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and AmpliTaq Gold, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript II and Kapa Robust, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript IV and Kapa Robust, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with LunaScript and Kapa Robust, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oysters prepared with LunaScript and Kapa Robust, pooled GI/GII PCR products

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa Robust, GII PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and Kapa Robust, GII PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript II and Kapa Robust, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript IV and Kapa Robust, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa Robust, GI PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: European Union Reference Laboratory (EURL) for Foodborne Viruses, National Food Agency, Hamnesplanaden 5, 753 19 Uppsala, Sweden.

text: Naturally contaminated oyster prepared with LunaScript and Kapa Robust, GI PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript II and Kapa HiFi, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oysters prepared with SuperScript and Kapa HiFi, pooled GI/GII PCR products

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa HiFi, GII PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa HiFi, GII PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and Kapa HiFi, GII PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with SuperScript II and Kapa HiFi, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with LunaScript and Kapa Robust, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa HiFi, GI PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa HiFi, GI PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with LunaScript and Kapa HiFi, GI PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: negative control (MGB water) prepared with SuperScript II and AmpliTaq Gold, pooled GI/GII PCR products

text: No

text: oyster metagenome

text: oyster metagenome

text: negative-AmplitaqGold


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: negative control (MGB water) prepared with SuperScript II and Kapa Robust, pooled GI/GII PCR products

text: No

text: oyster metagenome

text: oyster metagenome

text: negative-KapaRobust


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: negative control (MGB water) prepared with SuperScript II and Kapa HiFi, pooled GI/GII PCR products

text: No

text: oyster metagenome

text: oyster metagenome

text: negative-KapaHiFi


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Spiked oysters prepared with LunaScript and Kapa HiFi, pooled GI/GII PCR products

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Naturally contaminated oyster prepared with LunaScript and AmpliTaq Gold, GII PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


MOCK-GII

text: Teagasc Food Research Centre

text: public

text: MOCK-GII

text: Marine Institute, Ireland

text: Synthetic mock community, GII PCR product

text: No

text: synthetic construct

text: synthetic construct

text: Mock


MOCK-GI

text: Teagasc Food Research Centre

text: public

text: MOCK-GI

text: Marine Institute, Ireland

text: Synthetic mock community, GI PCR product

text: No

text: synthetic construct

text: synthetic construct

text: Mock


Neg

text: Teagasc Food Research Centre

text: public

text: Neg

text: Marine Institute, Ireland

text: negative control (MGB)

text: No

text: mixed RNA library

text: mixed RNA library

text: negative control


text: female

characteristic: ArrayExpress-SEX

text: Diploechiniscus oihonnae

characteristic: ArrayExpress-SPECIES

text: Female

characteristic: GENDER

text: SC

text: public

text: Diploechiniscus oihonnae

text: Diploechiniscus oihonnae

text: Diploechiniscus oihonnae


text: female

text: Echiniscus quadrispinosus

text: Female

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Echiniscus quadrispinosus

text: Echiniscus quadrispinosus

text: Echiniscus quadrispinosus


text: female

text: Echiniscus sp. ZA.555

text: Female

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Echiniscus sp. ZA.555

text: Echiniscus sp. ZA.555

text: Echiniscus sp. ZA.555


characteristic: Age

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Max Planck Institute for Biology of Ageing

text: house mouse

text: Mus musculus

text: Mus musculus

text: microbiome

characteristic: tissue


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Biology of Ageing

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: microbiome


text: Evolutionary Biology Centre

text: public

tag: Namespace:Evolutionary Biology Centre

text: Lab sampled pupa

characteristic: description

text: pupa

text: Leptidea sinapis

text: Leptidea sinapis

text: male

characteristic: sex

text: LsinapisSweM

characteristic: title


text: Evolutionary Biology Centre

text: public

text: Lab sampled pupa

text: pupa

text: Leptidea sinapis

text: Leptidea sinapis

text: female

text: LsinapisSweF


text: Evolutionary Biology Centre

text: public

text: Lab sampled pupa

text: pupa

text: Leptidea sinapis

text: Leptidea sinapis

text: male

text: LsinapisSpaM


text: Evolutionary Biology Centre

text: public

text: Lab sampled pupa

text: pupa

text: Leptidea sinapis

text: Leptidea sinapis

text: female

text: LsinapisSpaF


text: Evolutionary Biology Centre

text: public

text: Lab sampled pupa

text: pupa

text: Leptidea juvernica

text: Leptidea juvernica

text: male

text: LjuvernicaM


text: Evolutionary Biology Centre

text: public

text: Lab sampled pupa

text: pupa

text: Leptidea juvernica

text: Leptidea juvernica

text: female

text: LjuvernicaF


text: Evolutionary Biology Centre

text: public

text: Lab sampled pupa

text: pupa

text: Leptidea reali

text: Leptidea reali

text: male

text: LrealiM


text: Evolutionary Biology Centre

text: public

text: Lab sampled pupa

text: pupa

text: Leptidea reali

text: Leptidea reali

text: female

text: LrealiF


text: public

tag: Namespace:Bioinformatics Group and Institute for Biochemistry Leipzig University

text: E. coli DH5α was cultivated in LB medium until reaching an OD600 of 0.5 and subsequently mixed with Lead-II-acetate to a final concentration of 75 mM for in vivo lead probing. After incubation for 7 minutes at 37 °C, reactions were stopped with ice-cold EDTA and total RNA was extracted using peqGOLD TriFast® (VWR) according to the manufacturers protocol, including an additional DNase I digestion. From every total RNA sample, two RNA-seq libraries were prepared, utilizing Arabidopsis thaliana RNL and E. coli RtcB to specifically capture 2ʹ,3ʹ-cP and 5ʹ-OH carrying fragments.

text: Escherichia coli DH5[alpha]

text: Escherichia coli DH5[alpha]

text: lead-treated replicate 1


text: Bioinformatics Group and Institute for Biochemistry Leipzig University

text: public

text: Escherichia coli DH5[alpha]

text: Escherichia coli DH5[alpha]

text: lead-treated replicate 2


text: public

text: E. coli DH5α was cultivated in LB medium until reaching an OD600 of 0.5 and subsequently mixed with deionized water as a control for in vivo lead probing. After incubation for 7 minutes at 37 °C, reactions were stopped with ice-cold EDTA and total RNA was extracted using peqGOLD TriFast® (VWR) according to the manufacturers protocol, including an additional DNase I digestion. From every total RNA sample, two RNA-seq libraries were prepared, utilizing Arabidopsis thaliana RNL and E. coli RtcB to specifically capture 2ʹ,3ʹ-cP and 5ʹ-OH carrying fragments.

text: Escherichia coli DH5[alpha]

text: Escherichia coli DH5[alpha]

text: water-treated control