text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Environment

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 9


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cecilia Crippa

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Cecilia Crippa

characteristic: Submitter Id

characteristic: collection date

text: Italian Cheese

characteristic: description

text: Italy

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: isolate

text: Food

text: Klebsiella michiganensis

characteristic: organism

text: Klebsiella michiganensis

text: Klebsiella sample 13

characteristic: title


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella pasteurii

text: Klebsiella pasteurii

text: Klebsiella sample 14


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Environment

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 15


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella pasteurii

text: Klebsiella pasteurii

text: Klebsiella sample 16


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 17


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 18


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 19


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Raoultella planticola

text: Raoultella planticola

text: Klebsiella sample 35


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 36


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 37


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 38


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Environment

text: Klebsiella variicola subsp. variicola

text: Klebsiella variicola subsp. variicola

text: Klebsiella sample 39


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 40


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Raoultella planticola

text: Raoultella planticola

text: Klebsiella sample 41


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 42


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 32


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 33


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 34


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella grimontii

text: Klebsiella grimontii

text: Klebsiella sample 46


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 47


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella grimontii

text: Klebsiella grimontii

text: Klebsiella sample 20


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 21


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 22


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 23


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Environment

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 24


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 25


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 26


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 27


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 28


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 29


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 31


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Environment

text: Klebsiella grimontii

text: Klebsiella grimontii

text: Klebsiella sample 43


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 44


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 45


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella pasteurii

text: Klebsiella pasteurii

text: Klebsiella sample 48


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 49


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 50


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 51


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 52


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 53


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 54


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 55


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Environment

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 56


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Environment

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 57


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Environment

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella sample 58


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Raoultella planticola

text: Raoultella planticola

text: Klebsiella sample 59


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 60


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 61


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella grimontii

text: Klebsiella grimontii

text: Klebsiella sample 62


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 63


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 64


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 65


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Environment

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 66


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella sample 67


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 69


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Klebsiella sample 70


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 71


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella sample 72


text: Cecilia Crippa

text: public

text: Italian Cheese

text: Italy

text: not provided

text: Food

text: Klebsiella grimontii

text: Klebsiella grimontii

text: Klebsiella sample 73


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Raoultella planticola

text: Raoultella planticola

text: Klebsiella sample 75


text: Cecilia Crippa

text: public

text: Italian Salami

text: Italy

text: not provided

text: Food

text: Raoultella planticola

text: Raoultella planticola

text: Klebsiella sample 76


text: public

tag: Namespace:Department of Chronic Diseases, Metabolism and Ageing (CHROMETA), Translational Research Center for Gastrointestinal Disorders (TARGID), KU Leuven, Leuven, Belgium

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Differentiated organoids of the AGR2 patient, UC patients or non-inflamed controls were cultured for 6 days. At day 6, Tunicamycin (1 µg/ml) or DMSO vehicle control (0.01%) was added for an additional 24 hours. Organoids were collected in lysis buffer and stored at -80 until RNA extraction. Total RNA was extracted using the RNeasy Mini Kit following the manufacturer instructions (Qiagen, Hilden, Germany). RNA was quantified by Nanodrop and the integrity was evaluated using Agilent Bio-analyzer 2100. The library construction was performed by the Lexogen QuantSeq 3’ mRNA-Seq Library Kit FWD (Lexogen, Vienna, Austria)

text: ulcerative colitis

characteristic: disease

text: organoid culture

characteristic: growth condition

text: Patient 2

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Chronic Diseases, Metabolism and Ageing (CHROMETA), Translational Research Center for Gastrointestinal Disorders (TARGID), KU Leuven, Leuven, Belgium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: ulcerative colitis

text: organoid culture

text: Patient 3

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: ulcerative colitis

text: organoid culture

text: Patient 4

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

text: human

text: AGR2 mutation

text: organoid culture

text: Sample 5

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

characteristic: title


text: public

text: ArrayExpress

text: human

characteristic: common name

text: AGR2 mutation

characteristic: disease

text: organoid culture

characteristic: growth condition

text: Sample 6

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

text: AGR2 mutation

text: organoid culture

text: Sample 7

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: non-inflamed control

text: organoid culture

text: Control 8

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: non-inflamed control

text: organoid culture

text: Control 9

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: non-inflamed control

text: organoid culture

text: Control 10

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: ulcerative colitis

text: organoid culture

text: Patient 3

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: tunicamycin

characteristic: stimulus


text: public

text: ArrayExpress

text: human

characteristic: common name

text: ulcerative colitis

characteristic: disease

text: organoid culture

characteristic: growth condition

text: Patient 4

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: tunicamycin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: human

text: AGR2 mutation

text: organoid culture

text: Sample 5

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens

text: tunicamycin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: AGR2 mutation

text: organoid culture

text: Sample 6

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: tunicamycin


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: non-inflamed control

text: organoid culture

text: Control 8

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: tunicamycin


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: non-inflamed control

text: organoid culture

text: Control 9

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: tunicamycin

characteristic: stimulus


text: public

text: ArrayExpress

text: human

characteristic: common name

text: non-inflamed control

characteristic: disease

text: organoid culture

characteristic: growth condition

text: Control 10

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: tunicamycin

characteristic: title


E-MTAB-11715_2:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 18

tag: Namespace:Institute of Immunobiology, Kantonsspital St. Gallen, St. Gallen, Switzerland

unit: year

characteristic: age

text: ArrayExpress

text: T cell

text: human

text: Protocols: After surgical excision, tonsils were collected in sterile phosphate buffered saline on ice and processed within 1 hour of resection. Heavily clotted or cauterized areas of the tissue were removed and tonsils were dissected into small pieces. For the isolation of stromal cells, tissue was digested using a MACS human tumor dissociation kit (Miltenyi Biotec) according to the manufacturer’s protocol. To enrich for stromal cells, hematopoietic and erythrocytic cells were depleted by incubating the cell suspension with MACS anti-CD45 and anti-CD235a (Glycophorin A) MicroBeads (Miltenyi Biotec) and passing it through a MACS LS column (Miltenyi Biotec). The unbound single cell suspension was stained for further cell sorting. For the isolation of hematopoietic cells, tissues were gently smashed across a 26-gauge wire mesh using a syringe plunger and washed with medium (RMPI1640 containing 2% FCS (Sigma), 1% Penicillin-Streptomycin (Corning) and 20 mM HEPES (Sigma)) until further staining for cell sorting. Hematopoietic cells were stained with fluorochrome-conjugated antibodies against human CD45, CD3, CD19 and CD14 and stromal cells with fluorochrome-conjugated antibodies against human CD45 and CD235a. Live/dead cell discrimination was performed by adding 7-amino-actinomycin D (7AAD; Calbiochem) prior to acquisition. CD45- CD235a- stromal cells, CD45+ CD3+ T cells and CD45+ CD19+ B cells were sorted with a BD FACS Melody cell sorter (BD Biosciences) and run on the 10x Chromium analyzer (10X Genomics). cDNA library generation was performed following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v3 Chemistry).

text: adult

characteristic: developmental stage

text: chronic hyperplastic tonsillitis

text: Tonsilitis 01

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 18


E-MTAB-11715_2:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Immunobiology, Kantonsspital St. Gallen, St. Gallen, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 3

text: ArrayExpress

text: stromal cell

text: human

text: pediatric

text: obstructive sleep apnea

text: Pediatric 03

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-11715_2:Sample 4

text: public

text: E-MTAB-11715_2:Sample 4

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: human

characteristic: common name

characteristic: description

text: adult

text: obstructive sleep apnea

characteristic: disease

text: Adult 01

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 4


E-MTAB-11715_2:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 17

characteristic: age

text: ArrayExpress

text: stromal cell

text: human

text: adult

characteristic: developmental stage

text: chronic hyperplastic tonsillitis

text: Tonsilitis 01

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 17

characteristic: title


E-MTAB-11715_2:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11715_2:Sample 2

text: ArrayExpress

text: stromal cell

text: human

text: pediatric

text: obstructive sleep apnea

text: Pediatric 02

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 2


E-MTAB-11715_2:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 6

text: ArrayExpress

text: stromal cell

text: human

text: adult

text: obstructive sleep apnea

text: Adult 03

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 6


E-MTAB-11715_2:Sample 19

text: public

text: E-MTAB-11715_2:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: human

characteristic: common name

characteristic: description

text: adult

text: chronic hyperplastic tonsillitis

characteristic: disease

text: Tonsilitis 01

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 19


E-MTAB-11715_2:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 5

characteristic: age

text: ArrayExpress

text: stromal cell

text: human

text: adult

characteristic: developmental stage

text: obstructive sleep apnea

text: Adult 02

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 5


E-MTAB-11715_2:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11715_2:Sample 20

text: ArrayExpress

text: B cell

text: human

text: adult

text: chronic hyperplastic tonsillitis

text: Tonsilitis 01

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 20

characteristic: title


E-MTAB-11715_2:Sample 21

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11715_2:Sample 21

text: ArrayExpress

text: B cell

text: human

text: adult

text: chronic hyperplastic tonsillitis

text: Tonsilitis 01

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

characteristic: sex

text: Sample 21


E-MTAB-11715_2:Sample 14

text: public

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 14

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: human

characteristic: common name

characteristic: description

text: adult

text: chronic hyperplastic tonsillitis

text: Tonsilitis 01

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 14


E-MTAB-11715_2:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 15

characteristic: age

text: ArrayExpress

text: stromal cell

text: human

text: adult

characteristic: developmental stage

text: chronic hyperplastic tonsillitis

characteristic: disease

text: Tonsilitis 01

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 15


E-MTAB-11715_2:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11715_2:Sample 16

text: ArrayExpress

text: stromal cell

text: human

text: adult

text: chronic hyperplastic tonsillitis

text: Tonsilitis 01

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: palatine tonsil

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 16


E-MTAB-11715_2:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11715_2:Sample 1

text: ArrayExpress

text: stromal cell

text: human

text: pediatric

text: obstructive sleep apnea

text: Pediatric 01

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

text: Sample 1

characteristic: title


E-MTAB-11715_2:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: human

characteristic: common name

text: adult

text: obstructive sleep apnea

text: Adult 04

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

characteristic: sex

text: Sample 8


E-MTAB-11715_2:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 9

characteristic: age

text: ArrayExpress

text: B cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: obstructive sleep apnea

text: Adult 04

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 9


E-MTAB-11715_2:Sample 22

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11715_2:Sample 22

text: ArrayExpress

text: myeloid cell

text: human

text: adult

text: obstructive sleep apnea

characteristic: disease

text: Adult 04

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 22


E-MTAB-11715_2:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11715_2:Sample 11

text: ArrayExpress

text: T cell

text: human

text: adult

text: obstructive sleep apnea

text: Adult 05

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 11


E-MTAB-11715_2:Sample 12

text: public

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 12

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: B cell

text: human

characteristic: common name

text: adult

text: obstructive sleep apnea

text: Adult 05

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

text: Sample 12

characteristic: title


E-MTAB-11715_2:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 13

characteristic: age

text: ArrayExpress

text: myeloid cell

text: human

characteristic: description

text: adult

text: obstructive sleep apnea

text: Adult 05

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

characteristic: sex

text: Sample 13


E-MTAB-11715_2:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11715_2:Sample 7

text: ArrayExpress

text: stromal cell

text: human

text: adult

characteristic: developmental stage

text: obstructive sleep apnea

characteristic: disease

text: Adult 04

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 7


E-MTAB-11715_2:Sample 10

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11715_2:Sample 10

text: ArrayExpress

text: stromal cell

text: human

text: adult

text: obstructive sleep apnea

text: Adult 05

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-11715_2:Sample 23

text: public

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: human

characteristic: common name

text: adult

text: acute tonsillitis

text: Tonsilitis 02

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 23


E-MTAB-11715_2:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 24

characteristic: age

text: ArrayExpress

text: stromal cell

text: human

characteristic: description

text: adult

text: acute tonsillitis

text: Tonsilitis 02

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 24

characteristic: title


E-MTAB-11715_2:Sample 26

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11715_2:Sample 26

text: ArrayExpress

text: T cell

text: human

text: adult

characteristic: developmental stage

text: acute tonsillitis

characteristic: disease

text: Tonsilitis 02

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

characteristic: sex

text: Sample 26


E-MTAB-11715_2:Sample 27

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11715_2:Sample 27

text: ArrayExpress

text: B cell

text: human

text: adult

text: acute tonsillitis

text: Tonsilitis 02

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 27


E-MTAB-11715_2:Sample 25

text: public

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 25

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: stromal cell

text: human

characteristic: common name

text: adult

text: acute tonsillitis

text: Tonsilitis 02

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 25


E-MTAB-11715_2:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 28

characteristic: age

text: ArrayExpress

text: stromal cell

text: human

characteristic: description

text: adult

text: acute tonsillitis

text: Tonsilitis 03

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 28


E-MTAB-11715_2:Sample 29

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11715_2:Sample 29

text: ArrayExpress

text: stromal cell

text: human

text: adult

characteristic: developmental stage

text: acute tonsillitis

characteristic: disease

text: Tonsilitis 03

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: male

text: Sample 29

characteristic: title


E-MTAB-11715_2:Sample 31

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11715_2:Sample 31

text: ArrayExpress

text: T cell

text: human

text: adult

text: acute tonsillitis

text: Tonsilitis 04

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

characteristic: sex

text: Sample 31


E-MTAB-11715_2:Sample 32

text: public

characteristic: SRA accession

text: E-MTAB-11715_2:Sample 32

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: B cell

text: human

characteristic: common name

text: adult

text: acute tonsillitis

text: Tonsilitis 04

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

text: Sample 32


E-MTAB-11715_2:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11715_2:Sample 30

characteristic: age

text: ArrayExpress

text: stromal cell

text: human

characteristic: description

text: adult

text: acute tonsillitis

text: Tonsilitis 04

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: palatine tonsil

text: Homo sapiens

text: female

text: Sample 30


text: 14 days

characteristic: Age of inoculation

text: 8 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN, DEPARTMENT OF BIOLOGY

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

text: RNA-seq for differential expression analysis between MOCK and alfalfa mosaic virus (AMV)-infected plants. 8dpi MOCK (mix 8 plants)

characteristic: genotype

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Plants were grown in 6 cm diameter pots in a growth chamber 25°C-16 h light/20°C-8 h dark (PMID when obtained)

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 50% peat/ 25%perlite/ 25% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with PE buffer

characteristic: plant treatment

text: 22 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: RNA-seq - A.t. mock control - Replicate 1


text: 14 days

characteristic: Age of inoculation

text: 8 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN, DEPARTMENT OF BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

text: thale cress

characteristic: common name

characteristic: description

text: Spain

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 50% peat/ 25%perlite/ 25% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with PE buffer

text: 22 days

text: Arabidopsis thaliana

text: Accession Col-0

text: RNA-seq - A.t. mock control - Replicate 2

characteristic: title


text: 14 days

text: 8 dpi

text: public

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: genotype

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 50% peat/ 25%perlite/ 25% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with PE buffer

characteristic: plant treatment

text: 22 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: RNA-seq - A.t. mock control - Replicate 3


text: 14 days

characteristic: Age of inoculation

text: 8 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

text: thale cress

characteristic: common name

text: RNA-seq for differential expression analysis between MOCK and alfalfa mosaic virus (AMV)-infected plants. 8dpi AMV (mix 8 plants)

characteristic: description

text: Spain

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 50% peat/ 25%perlite/ 25% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with AMV

text: 22 days

text: Arabidopsis thaliana

text: Accession Col-0

text: RNA-seq - A.t. AMV infected - Replicate 1

characteristic: title


text: 14 days

text: 8 dpi

text: public

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: genotype

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 50% peat/ 25%perlite/ 25% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with AMV

characteristic: plant treatment

text: 22 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: RNA-seq - A.t. AMV infected - Replicate 2


text: 14 days

characteristic: Age of inoculation

text: 8 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

text: thale cress

characteristic: common name

characteristic: description

text: Spain

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 50% peat/ 25%perlite/ 25% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with AMV

text: 22 days

text: Arabidopsis thaliana

text: Accession Col-0

text: RNA-seq - A.t. AMV infected - Replicate 3

characteristic: title


text: 16 days

text: 7 dpi

text: public

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

text: HyperTRIBE experiment for detection in-vivo binding of ECT2 to viral RNAs. ect2-1/ECT2-FLAG-ADAR 7dpi AMV (mix 10 plants)

text: Pro(ECT2):ECT2-FLAG-ADARcd-E488Q:ter(ECT2)

characteristic: genetic modification

characteristic: genotype

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Sterile grown/MS-agar (PMID when obtained)

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with AMV

characteristic: plant treatment

text: 23 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: ECT2 HyperTRIBE in AMV-infected A.t.-ect2-1/ECT2-FLAG-ADAR - S1


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

text: thale cress

characteristic: common name

characteristic: description

text: Denmark

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with AMV

text: 23 days

text: Arabidopsis thaliana

text: Accession Col-0

text: ECT2 HyperTRIBE in AMV-infected A.t.-ect2-1/ECT2-FLAG-ADAR - S2

characteristic: title


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

text: public

text: 25°C-16 h/20°C-8 h

characteristic: collection date

text: thale cress

characteristic: genetic modification

characteristic: genotype

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with AMV

characteristic: plant treatment

text: 23 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: ECT2 HyperTRIBE in AMV-infected A.t.-ect2-1/ECT2-FLAG-ADAR - S3


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

text: thale cress

characteristic: common name

characteristic: description

text: Denmark

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with AMV

text: 23 days

text: Arabidopsis thaliana

text: Accession Col-0

text: ECT2 HyperTRIBE in AMV-infected A.t.-ect2-1/ECT2-FLAG-ADAR - S4

characteristic: title


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

text: public

text: 25°C-16 h/20°C-8 h

characteristic: collection date

text: thale cress

characteristic: genetic modification

characteristic: genotype

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with AMV

characteristic: plant treatment

text: 23 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: ECT2 HyperTRIBE in AMV-infected A.t.-ect2-1/ECT2-FLAG-ADAR - S5


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

text: thale cress

characteristic: common name

text: HyperTRIBE experiment for detection in-vivo binding of ECT2 to viral RNAs. FLAG-ADAR 7dpi AMV (mix 10 plants)

characteristic: description

text: Denmark

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with AMV

text: 23 days

text: Arabidopsis thaliana

text: Accession Col-0

text: ECT2 HyperTRIBE in AMV-infected A.t. - FLAG-ADAR - S6

characteristic: title


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

text: UNIVERSITY OF COPENHAGEN, DEPARTMENT OF BIOLOGY

text: public

text: 25°C-16 h/20°C-8 h

characteristic: collection date

text: thale cress

characteristic: genetic modification

characteristic: genotype

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with AMV

characteristic: plant treatment

text: 23 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: ECT2 HyperTRIBE in AMV-infected A.t. - FLAG-ADAR - S7


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

text: thale cress

characteristic: common name

characteristic: description

text: Denmark

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with AMV

text: 23 days

text: Arabidopsis thaliana

text: Accession Col-0

text: ECT2 HyperTRIBE in AMV-infected A.t. - FLAG-ADAR - S8

characteristic: title


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

text: public

text: 25°C-16 h/20°C-8 h

characteristic: collection date

text: thale cress

characteristic: genetic modification

characteristic: genotype

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 16 h white light/8h darkness

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: Vegetative

characteristic: plant developmental stage

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

characteristic: plant growth medium

text: Inner emerging rosette leaves

characteristic: plant structure

text: Mechanically inoculated with AMV

characteristic: plant treatment

text: 23 days

characteristic: sampled age

text: Arabidopsis thaliana

text: Accession Col-0

characteristic: subspecific genetic lineage name

text: ECT2 HyperTRIBE in AMV-infected A.t. - FLAG-ADAR - S9


text: 16 days

characteristic: Age of inoculation

text: 7 dpi

characteristic: Days post-inoculation (dpi)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 25°C-16 h/20°C-8 h

characteristic: air temperature regimen

text: thale cress

characteristic: common name

characteristic: description

text: Denmark

text: growth chamber

text: 16 h white light/8h darkness

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: Vegetative

text: 89% peat/ 5.5%perlite/ 5.5% vermiculite

text: Inner emerging rosette leaves

text: Mechanically inoculated with AMV

text: 23 days

text: Arabidopsis thaliana

text: Accession Col-0

text: ECT2 HyperTRIBE in AMV-infected A.t. - FLAG-ADAR - S10

characteristic: title


text: Genomix4lie s.r.l.

text: public

tag: Namespace:Genomix4lie s.r.l.

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Tumor specimens were macrodissected by a pathologist starting from the histological analysis of Hematoxylin-Eosin (HE)-stained slides. RNA was extracted from the macrodissected tissues by using the Qiagen RNeasy FFPE kit (Hilden, Germany) according to the manufacturer's instructions. Indexed libraries were prepared from 50ng/ea purified RNA with TruSeq RNA Exome Sample Prep Kit (Illumina) according to the manufacturer's instructions. Libraries were quantified using the TapeStation 4200 (Agilent Technologies) and Invitrogen Qubit fluorometer (Thermo Fisher Scientific), then pooled such that each index-tagged sample was present in equimolar amounts, with final concentration of the pooled samples of 2nM.

text: adult

characteristic: developmental stage

text: colitis-associated cancer (CAC)

characteristic: disease

text: Winnie-ApcMin/+

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: neoplasm

characteristic: organism part

text: aberrant crypt foci (ACF) macrodissected from the distal colon

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genomix4lie s.r.l.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: adult

text: colitis-associated cancer (CAC)

text: Winnie-ApcMin/+-TNF-KO

text: Mus musculus

text: Mus musculus

text: neoplasm

text: Mus musculus

text: male


E-MTAB-11738_3:Sample 19

text: Institute of Immunobiology, Kantonsspital St. Gallen, St. Gallen, Switzerland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738_3:Sample 19

characteristic: Submitter Id

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: common name

text: Protocols: Mice were sacrificed at age 6-10 weeks and lymph nodes, spleen and Peyer’s patches were removed for further stromal cell or immune cell isolation and scRNA sequencing analysis. For cell preparation tissues were cut into small pieces. For enzymatic digestion, cut tissues from murine lymph nodes, spleen and Peyer’s patches were collected in RPMI 1640 medium containing 2% FCS, 20 mM HEPES pH 7.2 (Lonza), 0.375 mg/ml Collagenase P (Roche) and 25 mg/ml DNaseI (Applichem). Dissociated tissue was incubated at 37°C for 60 min, with resuspension and collection of the supernatant every 15 min. For cell-sorting experiments, stromal cells were enriched by incubating the cell suspension with MACS anti-CD45 and anti-TER119 microbeads (Miltenyi Biotec) and passing it through a MACS LS column (Miltenyi Biotec). The unbound single cell suspension was stained for cell sorting with a BD FACS Melody cell sorter (BD Biosciences) and run on the 10x Chromium analyzer (10X Genomics). For isolation of hematopoietic cells from murine organs, tissues were gently smashed across a 26-gauge wire mesh and washed with medium (RMPI-1640 containing 2% FCS (Sigma), 1% Penicillin-Streptomycin (Corning) and 20mM HEPES (Sigma)) until further staining for cell sorting. cDNA library generation was performed following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v3 Chemistry). VSV immunization protocol: Mice were immunized intravenously with 2 × 107 plaque-forming units (PFU) of VSV. Draining inguinal lymph nodes and spleens were collected on day 14 after immunization for further processing for single cell RNA-sequencing.

characteristic: description

text: adult

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 individuals

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Peyer's patch

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 19


E-MTAB-12446:Rps19R67∆/R67∆ A

text: public

text: E-MTAB-12446:Rps19R67∆/R67∆ A

tag: Namespace:Biotechnology and Biomedicine Center of the Academy of Sciences and Charles University in Vestec (BIOCEV); First Faculty of Medicine; Charles University

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hematopoietic multipotent progenitor cell

text: house mouse

text: Protocols: Bone marrow cells from 10-week WT control, homozygous Rps19R67∆, Trp53−/− mutant, and double-homozygous Rps19R67∆/R67∆Trp53−/− males were collected into ice cold DMEM with 20% FBS and stained with anti-CD117-BV421, anti-Sca1-PE, and anti-lineage (Ter119, Gr1, Mac1, B220, Cd3e) antibody cocktail. Bone marrows were enriched for lineage-negative Sca1−c-Kit+ (LS−K) and Lin−Sca1+c-Kit+ (LSK) stem cell populations by fluorescence-activated cell sorting using BD Aria II SORP cell sorter. Cell suspensions were concentrated to approximate cell density of 1000 cells/uL. Following enrichment by fluorescence-activated cell sorting the viability of hematopoietic progenitors in cell suspension was assessed. Only cell suspensions with viability > 90% were processed using Chromium Next GEM Single Cell 3ʹ Kit v3.1 (dual index) library preparation kit (10x Genomics, CA, USA). Libraries were prepared by loading approximately 20000 cells per well of Chromium Next GEM Single Cell 3ʹ Kit v3.1 (dual index) library preparation kit (10x Genomics, CA, USA) and libraries were prepared by following manufacturer's protocol.

text: adult

characteristic: developmental stage

text: Diamond-Blackfan anemia

characteristic: disease

characteristic: genotype

text: RPS19 M 1

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: male

text: Rps19R67∆/R67∆ A

characteristic: title


E-MTAB-12446:Rps19R67∆/R67∆ Trp53−/− A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Biotechnology and Biomedicine Center of the Academy of Sciences and Charles University in Vestec (BIOCEV); First Faculty of Medicine; Charles University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12446:Rps19R67∆/R67∆ Trp53−/− A

text: ArrayExpress

text: house mouse

text: adult

text: Diamond-Blackfan anemia

text: Rps19R67∆/R67∆ Trp53−/−

text: RPS19/TRP53 1

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: male

characteristic: sex

text: Rps19R67∆/R67∆ Trp53−/− A


E-MTAB-12446:Trp53−/− A

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12446:Trp53−/− A

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: normal

text: TRP53 M 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: male

text: Trp53−/− A


E-MTAB-12446:Rps19R67∆/R67∆ B

text: public

text: E-MTAB-12446:Rps19R67∆/R67∆ B

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

text: Diamond-Blackfan anemia

characteristic: disease

characteristic: genotype

text: RPS19 M 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: male

characteristic: strain

text: Rps19R67∆/R67∆ B


E-MTAB-12446:Rps19R67∆/R67∆ Trp53−/− B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-12446:Rps19R67∆/R67∆ Trp53−/− B

text: ArrayExpress

text: house mouse

text: adult

text: Diamond-Blackfan anemia

text: Rps19R67∆/R67∆ Trp53−/−

text: RPS19/TRP53 2

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: male

text: Rps19R67∆/R67∆ Trp53−/− B

characteristic: title


E-MTAB-12446:Trp53−/− B

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12446:Trp53−/− B

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: normal

text: TRP53 M 2

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: male

characteristic: sex

text: Trp53−/− B


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: C57Bl6 M

characteristic: individual

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: male

text: Wild-type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

text: A 4 L seawater sample was collected using a CTD rosette sampler. The sample was immediately filtered first through a 3 µm and then through a 0.2 µm polycarbonate membrane filter. A nucleic acid extraction was performed on the 0.2 - 3 µm fraction using a DNA/RNA Zymo Mini Prep Plus kit. The DNA was then subject to an ultra low library preparation procotol and sequenced using a PacBio Sequel Iie, generating HiFi reads.

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine photic zone [ENVO:00000209]

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: FRAM_WSC20_S8_SRF seawater sample

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: description

text: sea water [ENVO:00002149]

text: Arctic Ocean

text: metagenome

text: marine photic zone [ENVO:00000209]

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_WSC20_S8_BML seawater sample

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: marine photic zone [ENVO:00000209]

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_WSC20_S10_SRF seawater sample

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: marine biome [ENVO:00000447]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine photic zone [ENVO:00000209]

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: FRAM_WSC20_S10_BML seawater sample

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: description

text: sea water [ENVO:00002149]

text: Arctic Ocean

text: metagenome

text: marine photic zone [ENVO:00000209]

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_WSC20_S25_SRF seawater sample

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: marine photic zone [ENVO:00000209]

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_WSC20_S25_BML seawater sample

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome [ENVO:00000447]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine photic zone [ENVO:00000209]

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: FRAM_WSC20_S26_SRF seawater sample

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: description

text: sea water [ENVO:00002149]

text: Arctic Ocean

text: metagenome

text: marine photic zone [ENVO:00000209]

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_WSC20_S26_BML seawater sample

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Pisa

characteristic: INSDC center name

text: public

tag: Namespace:University of Pisa

text: H. illucens degutted males

text: Hermetia illucens

text: Hermetia illucens

text: male

characteristic: sex


text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN, SECTION OF MICROBIOLOGY

text: Baseline

text: gut metagenome

characteristic: organism

text: gut metagenome


text: UNIVERSITY OF COPENHAGEN, SECTION OF MICROBIOLOGY

text: public

text: Baseline

text: gut metagenome

text: gut metagenome


text: public

text: gut metagenome

text: gut metagenome


text: public

text: Batch

text: gut metagenome

text: gut metagenome


text: public

text: Chemostat

text: gut metagenome

text: gut metagenome


text: public

text: Inoculum

text: gut metagenome

text: gut metagenome


text: public

text: Controls

text: gut metagenome

text: gut metagenome


text: public

text: Changestat

text: gut metagenome

text: gut metagenome


text: public

text: Inoculum

text: gut metagenome

text: gut metagenome

text: Inoculum


text: public

text: Stabilisation

text: gut metagenome

text: gut metagenome


text: Philipps University Marburg

text: public

tag: Namespace:Philipps University Marburg

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: washed with cold PBS, lyse in Tris-SDS buffer (4 % SDS, 100 mM Tris/HCl pH 7,6) + Protease Inhibitor (Sigma 1:1000) and Phosphatase Inhibitor (Phos-stop, Sigma, 1 tablet per 10 ml) OC91s-OCMI cells cultured in OCMI media. Starvation for 40h in OCMI media w/o FCS before harvesting. NucleoSpin RNA-Isolation Kit, Macherey & Nagel “QuantSeq 3′ mRNA-Seq Library Prep Kit FWD for Illumina” (Lexogen, Vienna, Austria)

text: adult

characteristic: developmental stage

text: high grade ovarian serous adenocarcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: ovary

characteristic: organism part

text: Homo sapiens


E-MTAB-12468:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12468:Sample 1

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: Freshly isolated inguinal and mesenteric lymph nodes were collected from 10 weeks old mice and frozen in 2-Methybutane (Sigma, M32631) with liquid nitrogen and immediately embedded into frozen section media (FSC22 Leica, 3801480) for spatial transcriptomics. The tissue blocks were cut into 10-μm sections using cryostat and mounted on Visium gene expression slides (10x Genomics, PN-1000188). Following the commercial brochure of Visium gene expression kits (10x Genomics, PN-1000184) the tissue blocks were cut into 10-μm sections using cryostat and mounted on Visium gene expression slides (10x Genomics, PN-1000188). Sections on Visium Gene Expression slides were first fixed with pre-cooled methanol for 30 minutes and stained with DAPI, B220 and aSMA and imaged with confocal microscopy to visualize the fiducial frames of capture areas and cell compartmentalization in different sections. The optimal permeabilization time for murine lymph node sections was 15 minutes evaluated by 10x Genomics Visium tissue optimization kit (10x Genomics, PN-1000193) for in situ hybridization and reverse transcription. cDNA libraries were generated using Visium spatial gene expression 3′ library construction kit (10x Genomics, PN-1000190).

text: adult

text: C57BL/6N-Tg(Ccl19-Cre) x R26-EYFP

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

characteristic: strain

text: Sample 1


E-MTAB-12468:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12468:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: C57BL/6N-Tg(Ccl19-Cre) x R26-EYFP

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

text: Sample 2

characteristic: title


E-MTAB-12468:Sample 3

characteristic: INSDC center name

text: public

text: E-MTAB-12468:Sample 3

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: C57BL/6N-Tg(Ccl19-Cre) x R26-EYFP

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

characteristic: sex

text: Sample 3


E-MTAB-12468:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12468:Sample 4

text: ArrayExpress

text: house mouse

text: adult

text: C57BL/6N-Tg(Ccl19-Cre) x R26-EYFP

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lymph node

characteristic: organism part

text: Mus musculus

text: female

text: Sample 4


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Harper Adams University

text: public

characteristic: INSDC status

tag: Namespace:Harper Adams University

text: cattle

text: Environmental Sample

text: gut

characteristic: environment (biome)

text: rumen

characteristic: environment (feature)

text: digesta

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Bos taurus

characteristic: project name

text: Bos taurus

text: Illumina Miseq

characteristic: sequencing method


E-MTAB-12564:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 16

tag: Namespace:Baker Heart and Diabetes Institute

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: tissues were collected at dissection, placed into 1.5ml tubes and immediately flash frozen in liquid nitrogen. Tissue samples were then stored at -80 degrees. RNA was extracted from ventricles and subcutaneous white adipose tissue (WAT) from each group using RNA-easy MiniPrep kit according to manufacturer’s instructions (Qiagen). RNA quality for sequencing was determined using the high-sensitivity Agilent RNA ScreenTape Assay for 4200 Tape Station System (Agilent Technologies). Only samples with an RNA Integrity Number (RIN) score >7 were selected for subsequent analysis. DNA libraries were generated as per the manufacturer’s protocol using the NEBNext Poly(A) mRNA Magnetic Isolation Module kit (New England Biolabs). 1μg total RNA per sample was inputted and adaptor ligation and PCR enrichment was performed using the NEBNext Multiplex Oligos for Illumina kit as per manufacturer’s instructions. Libraries were individually bar coded using n6-barcodes and library quantity and quality were assessed as per manufacturer’s instructions using the Agilent D1000 ScreenTape Assay for 4200 TapeStation System.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: ERalpha fl/fl

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: female

characteristic: sex

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 16

characteristic: title


E-MTAB-12564:Sample 29

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 29

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

characteristic: organism part

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 29


E-MTAB-12564:Sample 15

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 15

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 15


E-MTAB-12564:Sample 32

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 32

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: ERalpha fl/fl

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: female

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 32


E-MTAB-12564:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 20

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 20

characteristic: title


E-MTAB-12564:Sample 7

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

characteristic: organism part

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

text: Sample 7


E-MTAB-12564:Sample 23

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 23

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: ERalpha fl/fl

characteristic: individual

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

text: Sample 23


E-MTAB-12564:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 4

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: male

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 4


E-MTAB-12564:Sample 21

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha -/-

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 21

characteristic: title


E-MTAB-12564:Sample 6

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: ERalpha -/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

characteristic: organism part

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

text: Sample 6


E-MTAB-12564:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 1

text: ArrayExpress

text: house mouse

text: adult

text: normal

characteristic: disease

text: ERalpha fl/fl

characteristic: individual

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

text: Sample 1


E-MTAB-12564:Sample 19

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: male

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 19


E-MTAB-12564:Sample 22

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 22

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: ERalpha -/-

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 22

characteristic: title


E-MTAB-12564:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 5

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha -/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

characteristic: organism part

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

text: Sample 5


E-MTAB-12564:Sample 18

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

characteristic: disease

text: ERalpha -/-

characteristic: individual

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

text: Sample 18


E-MTAB-12564:Sample 2

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: ERalpha -/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: male

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 2


E-MTAB-12564:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 28

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha -/-

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 28

characteristic: title


E-MTAB-12564:Sample 9

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha -/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

characteristic: organism part

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 9


E-MTAB-12564:Sample 17

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 17

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: ERalpha fl/fl

characteristic: individual

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 17


E-MTAB-12564:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 3

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: male

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 3


E-MTAB-12564:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha -/-

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: male

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 8

characteristic: title


E-MTAB-12564:Sample 14

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: ERalpha -/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

characteristic: organism part

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 14


E-MTAB-12564:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 27

text: ArrayExpress

text: house mouse

text: adult

text: normal

characteristic: disease

text: ERalpha -/-

characteristic: individual

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 27


E-MTAB-12564:Sample 13

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: female

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 13


E-MTAB-12564:Sample 10

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: ERalpha fl/fl

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 10

characteristic: title


E-MTAB-12564:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 11

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha -/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cardiac ventricle

characteristic: organism part

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 11


E-MTAB-12564:Sample 31

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 31

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

characteristic: disease

text: ERalpha -/-

characteristic: individual

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 31


E-MTAB-12564:Sample 12

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: ERalpha -/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cardiac ventricle

text: Mus musculus

text: female

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 12


E-MTAB-12564:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 30

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

characteristic: strain

text: Sample 30

characteristic: title


E-MTAB-12564:Sample 26

characteristic: ENA-FIRST-PUBLIC

text: Baker Heart and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12564:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha fl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

characteristic: organism part

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 26


E-MTAB-12564:Sample 25

text: Baker Heart and Diabetes Institute

text: public

text: E-MTAB-12564:Sample 25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: ERalpha -/-

characteristic: individual

text: Mus musculus

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: female

text: mixed C57BL/6J and FVB/N

text: Sample 25


E-MTAB-12564:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Baker Heart and Diabetes Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12564:Sample 24

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: ERalpha -/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: subcutaneous adipose tissue

text: Mus musculus

text: male

characteristic: sex

text: mixed C57BL/6J and FVB/N

text: Sample 24


characteristic: ENA-FIRST-PUBLIC

text: Harper Adams University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

text: Environmental Sample

text: gut

characteristic: environment (biome)

text: rumen

characteristic: environment (feature)

text: digesta

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Bos taurus

characteristic: project name

text: Bos taurus

text: Illumina Miseq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Klinikum rechts der Isar

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8271

tag: Namespace:Klinikum rechts der Isar

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: Klinikum rechts der Isar

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8272

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8273

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8274

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8275

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8276

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8277

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8278

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8279

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:804-8280

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8281

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8282

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8283

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8284

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8285

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8286

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8287

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8288

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8289

text: house mouse

text: Mus musculus

text: Mus musculus


text: Klinikum rechts der Isar

text: public

text: ena-SAMPLE-TAB-04-02-2023-14:48:33:805-8290

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ID

text: Earlham Institute

text: public

tag: Namespace:Earlham Institute

text: Nile tilapia

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Stirling

characteristic: geographic location (region and locality)

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Illumina NovaSeq 6000, 50bp PE

text: male

characteristic: sex

text: gill

text: Oreochromis niloticus ATAC-seq and gDNA control reads


characteristic: ENA-CHECKLIST

text: Earlham Institute

text: public

text: Nile tilapia

text: United Kingdom

text: Stirling

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Illumina NovaSeq 6000, 150bp PE

characteristic: sequencing method

text: male

text: gill

text: Oreochromis niloticus RNA-seq reads

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

text: yes

characteristic: Is the sequenced pathogen host associated?

text: DTU-GE

characteristic: broker name

text: KCRI

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: bos taurus

characteristic: host scientific name

text: staphylococcus aureus

characteristic: isolate

text: milk

characteristic: isolation source host-associated

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: yes

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: KCRI

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: not provided

text: homo sapiens

text: staphylococcus aureus

text: nasal swab

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus