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text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99165

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99166

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99167

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99168

text: Yellow-necked field mouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus flavicollis

text: Apodemus flavicollis


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99169

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99170

text: Yellow-necked field mouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus flavicollis

text: Apodemus flavicollis


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99171

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: Royal Veterinary College, University of London

text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99172

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99173

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99174

text: Yellow-necked field mouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus flavicollis

text: Apodemus flavicollis


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99175

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99176

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99177

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99178

text: Bank vole

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Myodes glareolus

text: Myodes glareolus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99179

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99180

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99181

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:298-99182

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99183

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99184

text: Yellow-necked field mouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus flavicollis

text: Apodemus flavicollis


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99185

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99186

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99187

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: Royal Veterinary College, University of London

text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99188

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99189

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99190

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Wytham Woods

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99191

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99192

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99193

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99194

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99195

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99196

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: public

text: ena-SAMPLE-TAB-24-02-2022-11:11:09:299-99197

text: European woodmouse

text: UK wood mouse faecal microbiomes

text: United Kingdom

text: Edinburgh

text: Apodemus sylvaticus

text: Apodemus sylvaticus


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax


text: Anopheles gambiae

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


Na�ve

text: University of Glasgow

text: public

text: Na�ve

tag: Namespace:University of Glasgow

text: Juan Quintana

text: house mouse

text: Mus musculus

text: Mus musculus

text: Female

characteristic: sex

characteristic: strain

text: brain


characteristic: ENA first public

text: University of Glasgow

text: public

text: Juan Quintana

text: house mouse

text: Mus musculus

text: Mus musculus

text: Female

text: brain


Mouse

characteristic: ENA-CHECKLIST

text: University of Glasgow

text: public

text: Mouse

text: Juan Quintana

text: house mouse

text: Na�ve

text: Mus musculus

text: Mus musculus

text: Female

text: Spatial transcriptomics

text: brain

text: Na�ve


characteristic: External Id

text: University of Glasgow

text: public

text: Juan Quintana

text: house mouse

text: Mus musculus

text: Mus musculus

text: Female

text: Spatial transcriptomics

text: brain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Manchester Metropolitan University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Human

characteristic: environment (biome)

text: Lung

characteristic: environment (feature)

text: Sputum

characteristic: environment (material)

text: United Kingdom

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: human lung metagenome

text: Postal study

characteristic: project name

text: human lung metagenome

text: Illumina MiSeq

characteristic: sequencing method


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: Submitter Id

text: Wild bird

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Dendrocopos major

characteristic: host scientific name

characteristic: isolate

text: Great spotted woodpecker

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 08-VLT001050

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Chicken

text: Sweden

text: healthy

text: Gallus gallus

text: Chicken

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 09-BKT079406


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wild boar

text: Sweden

text: not provided

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 09-BKT081734


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Wild bird

text: Sweden

text: diseased

text: Dendrocopos major

text: Great spotted woodpecker

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 09-VLT000795


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild bird

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

text: Larus argentatus

text: European herring gull

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 10-BKT000715


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Cattle

text: Sweden

text: healthy

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Cattle

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 10-BKT043848


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild bird

text: Sweden

text: diseased

text: Dendrocopos major

characteristic: isolate

text: Great spotted woodpecker

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 11-VLT003860


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: not provided

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-BKT002146

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: not provided

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-BKT002147


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

text: public

text: Wild boar

text: Sweden

text: not provided

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-BKT002148


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

characteristic: collection date

text: Wild boar

text: Sweden

text: not provided

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-BKT021322


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Food

text: Sweden

text: Food

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-BKT034358


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Feed factory

text: Sweden

text: Feed factory

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-FOD001463


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Feed factory

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: Feed factory

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-FOD003270


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Feed factory

text: Sweden

text: Feed factory

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 12-FOD003942


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Otter

text: Sweden

text: diseased

characteristic: host health state

text: Lutra lutra

characteristic: host scientific name

text: Eurasian otter

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 14-VLT001302


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Domestic pig

text: Sweden

text: healthy

text: Sus scrofa

characteristic: isolate

text: Domestic pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 15-BKT056815


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152714

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152715


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152716


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

characteristic: collection date

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152717


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152718


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152719


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152720


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152722


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

characteristic: isolate

text: Wild boar

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152723


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152724

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152725


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK152726


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

characteristic: collection date

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154132


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154133


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154134


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154135


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154138


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

characteristic: isolate

text: Wild boar

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154140


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154141

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154142


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154143


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

characteristic: collection date

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154144


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK154145


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Domestic cat

text: Sweden

text: diseased

text: Felis catus

text: Domestic cat

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK193266


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wolf

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: healthy

text: Canis lupus

text: Wolf

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 17-MIK257093


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Domestic cat

text: Sweden

text: diseased

characteristic: host health state

text: Felis catus

characteristic: host scientific name

text: Domestic cat

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 18-MIK017647


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Domestic cat

text: Sweden

text: diseased

text: Felis catus

characteristic: isolate

text: Domestic cat

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 18-MIK224168


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Domestic pig

text: Sweden

text: healthy

text: Sus scrofa

text: Domestic pig

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 18-MIK224852

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Domestic cat

text: Sweden

text: diseased

text: Felis catus

text: Domestic cat

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 19-MIK321399


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

text: public

text: Wild bird

text: Sweden

text: diseased

text: Corvus monedula

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 19-VLT000038


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

characteristic: collection date

text: Wild bird

text: Sweden

text: diseased

text: Corvus monedula

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 19-VLT000045


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wild bird

text: Sweden

text: diseased

text: Corvus monedula

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 19-VLT000047


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Wild bird

text: Sweden

text: diseased

text: Corvus monedula

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 19-VLT000078


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild bird

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

text: Corvus monedula

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 19-VLT000087


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Pet lizard

text: Sweden

text: healthy

characteristic: host health state

text: Pogona vitticeps

characteristic: host scientific name

text: Bearded dragon

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK055118


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Pet lizard

text: Sweden

text: healthy

text: not provided

characteristic: isolate

text: Lizard (unspecified species)

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK055120


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Cattle

text: Sweden

text: healthy

text: Bos taurus

text: Cattle

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK181787

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK315891


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK322105


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

characteristic: collection date

text: Food

text: Sweden

text: Food

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK326009


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK328907


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK330543


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-MIK345432


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild bird

text: Sweden

text: diseased

characteristic: host health state

text: Dendrocopos major

characteristic: host scientific name

text: Great spotted woodpecker

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-VLT001878


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

characteristic: isolate

text: Wild boar

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 20-VLT002686


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-VLT002714

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 20-VLT003184


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

text: public

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 21-MIK001018


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

characteristic: collection date

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 21-MIK001026


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wild boar

text: Sweden

text: healthy

text: Sus scrofa

text: Wild boar

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 21-MIK014914


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Wild bird

text: Sweden

text: diseased

text: Corvus monedula

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 21-VLT000113


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild bird

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

text: Corvus monedula

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 21-VLT000114


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild bird

text: Sweden

text: diseased

characteristic: host health state

text: Corvus monedula

characteristic: host scientific name

text: Jackdaw

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica isolate 21-VLT000115


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Wild bird

text: Sweden

text: diseased

text: Corvus monedula

characteristic: isolate

text: Jackdaw

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica isolate 21-VLT000470


characteristic: ENA-CHECKLIST

text: UNIL

text: public

text: Rhizophagus irregularis

text: Rhizophagus irregularis

characteristic: title


E-MTAB-11738:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 1

tag: Namespace:Institute of Immunobiology, Kantonsspital St. Gallen, St. Gallen, Switzerland

text: 6 to 10

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

characteristic: common name

text: Protocols: Mice were sacrificed at age 6-10 weeks and lymph nodes, spleen and Peyer’s patches were removed for further stromal cell or immune cell isolation and scRNA sequencing analysis. For cell preparation tissues were cut into small pieces. For enzymatic digestion, cut tissues from murine lymph nodes, spleen and Peyer’s patches were collected in RPMI 1640 medium containing 2% FCS, 20 mM HEPES pH 7.2 (Lonza), 0.375 mg/ml Collagenase P (Roche) and 25 mg/ml DNaseI (Applichem). Dissociated tissue was incubated at 37°C for 60 min, with resuspension and collection of the supernatant every 15 min. For cell-sorting experiments, stromal cells were enriched by incubating the cell suspension with MACS anti-CD45 and anti-TER119 microbeads (Miltenyi Biotec) and passing it through a MACS LS column (Miltenyi Biotec). The unbound single cell suspension was stained for cell sorting with a BD FACS Melody cell sorter (BD Biosciences) and run on the 10x Chromium analyzer (10X Genomics). For isolation of hematopoietic cells from murine organs, tissues were gently smashed across a 26-gauge wire mesh and washed with medium (RMPI-1640 containing 2% FCS (Sigma), 1% Penicillin-Streptomycin (Corning) and 20mM HEPES (Sigma)) until further staining for cell sorting. cDNA library generation was performed following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v3 Chemistry).

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lymph node

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-11738:Sample 3

characteristic: External Id

text: Institute of Immunobiology, Kantonsspital St. Gallen, St. Gallen, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 3

characteristic: Submitter Id

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: description

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: mixed

text: Sample 3


E-MTAB-11738:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 6

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

text: Protocols: Mice were sacrificed at age 6-10 weeks and lymph nodes, spleen and Peyer’s patches were removed for further stromal cell or immune cell isolation and scRNA sequencing analysis. For cell preparation tissues were cut into small pieces. VSV immunization protocol: Mice were immunized intravenously with 2 × 107 plaque-forming units (PFU) of VSV. Draining inguinal lymph nodes and spleens were collected on day 14 after immunization for further processing for single cell RNA-sequencing. For enzymatic digestion, cut tissues from murine lymph nodes, spleen and Peyer’s patches were collected in RPMI 1640 medium containing 2% FCS, 20 mM HEPES pH 7.2 (Lonza), 0.375 mg/ml Collagenase P (Roche) and 25 mg/ml DNaseI (Applichem). Dissociated tissue was incubated at 37°C for 60 min, with resuspension and collection of the supernatant every 15 min. For cell-sorting experiments, stromal cells were enriched by incubating the cell suspension with MACS anti-CD45 and anti-TER119 microbeads (Miltenyi Biotec) and passing it through a MACS LS column (Miltenyi Biotec). The unbound single cell suspension was stained for cell sorting with a BD FACS Melody cell sorter (BD Biosciences) and run on the 10x Chromium analyzer (10X Genomics). For isolation of hematopoietic cells from murine organs, tissues were gently smashed across a 26-gauge wire mesh and washed with medium (RMPI-1640 containing 2% FCS (Sigma), 1% Penicillin-Streptomycin (Corning) and 20mM HEPES (Sigma)) until further staining for cell sorting. cDNA library generation was performed following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v3 Chemistry).

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: vesicular stomatitis virus

characteristic: infect

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lymph node

text: Mus musculus

text: mixed

text: Sample 6

characteristic: title


E-MTAB-11738:Sample 25

text: public

text: E-MTAB-11738:Sample 25

text: 6 to 10

text: ArrayExpress

text: B cell

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: vesicular stomatitis virus

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 25


E-MTAB-11738:Sample 14

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 14

characteristic: Submitter Id

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: description

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: mixed

text: Sample 14


E-MTAB-11738:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 10

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Peyer's patch

text: Mus musculus

text: mixed

text: Sample 10

characteristic: title


E-MTAB-11738:Sample 15

text: public

text: E-MTAB-11738:Sample 15

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 15


E-MTAB-11738:Sample 17

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 17

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: vesicular stomatitis virus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 17


E-MTAB-11738:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 12

characteristic: Submitter Id

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

characteristic: description

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Peyer's patch

text: Mus musculus

text: mixed

text: Sample 12


E-MTAB-11738:Sample 13

text: public

text: E-MTAB-11738:Sample 13

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 13

characteristic: title


E-MTAB-11738:Sample 8

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 8

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

text: Mus musculus

text: Peyer's patch

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 8


E-MTAB-11738:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 7

characteristic: Submitter Id

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

characteristic: description

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: vesicular stomatitis virus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: mixed

text: Sample 7


E-MTAB-11738:Sample 20

text: public

text: E-MTAB-11738:Sample 20

text: 6 to 10

text: ArrayExpress

text: T cell

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: vesicular stomatitis virus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lymph node

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 20


E-MTAB-11738:Sample 18

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 18

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: vesicular stomatitis virus

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 18

characteristic: title


E-MTAB-11738:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 4

characteristic: Submitter Id

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

characteristic: description

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: mixed

text: Sample 4


E-MTAB-11738:Sample 21

text: public

text: E-MTAB-11738:Sample 21

text: 6 to 10

text: ArrayExpress

text: T cell

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: vesicular stomatitis virus

characteristic: infect

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Peyer's patch

characteristic: organism part

text: Mus musculus

text: mixed

text: Sample 21


E-MTAB-11738:Sample 5

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 5

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 5


E-MTAB-11738:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 22

characteristic: Submitter Id

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

characteristic: description

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: vesicular stomatitis virus

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: mixed

text: Sample 22

characteristic: title


E-MTAB-11738:Sample 9

text: public

text: E-MTAB-11738:Sample 9

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Peyer's patch

characteristic: organism part

text: Mus musculus

text: mixed

text: Sample 9


E-MTAB-11738:Sample 16

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 16

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 16


E-MTAB-11738:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 23

characteristic: Submitter Id

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: B cell

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: vesicular stomatitis virus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 23


E-MTAB-11738:Sample 2

text: public

text: E-MTAB-11738:Sample 2

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

characteristic: genotype

text: mixed pool of 8 to 12 mice

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lymph node

text: Mus musculus

text: mixed

text: Sample 2

characteristic: title


E-MTAB-11738:Sample 11

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11738:Sample 11

text: 6 to 10

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: Mus musculus

text: Mus musculus

text: Peyer's patch

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 11


E-MTAB-11738:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11738:Sample 24

characteristic: Submitter Id

text: 6 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: B cell

text: house mouse

text: adult

text: normal

text: Tg(Cxcl13-Cre/TdTomato)+ x R26-EYFP++

text: mixed pool of 8 to 12 mice

text: vesicular stomatitis virus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: Peyer's patch

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 24


text: Italian National Institute of Health

text: public

tag: Namespace:Italian National Institute of Health

text: human

characteristic: common name

text: Homo sapiens cardiomyocytes from donors control 2

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: M

text: Myocardial samples from the subaortic septum

characteristic: title


characteristic: External Id

text: Italian National Institute of Health

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens cardiomyocytes from donors control 3

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Homo sapiens cardiomyocytes from donors control 5

text: Homo sapiens

text: Homo sapiens

text: M

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from donors control 6

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens cardiomyocytes from donors control 7

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 4

text: Homo sapiens

text: Homo sapiens

text: F

text: Homo_sapiens_cardiomyocytes_HCM_patient4


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 8

text: Homo sapiens

text: Homo sapiens

text: M

text: Homo_sapiens_cardiomyocytes_HCM_patient8


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 9

text: Homo sapiens

text: Homo sapiens

text: F

text: Homo_sapiens_cardiomyocytes_HCM_patient9


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 10

text: Homo sapiens

text: Homo sapiens

text: M

text: Homo_sapiens_cardiomyocytes_HCM_patient10


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 13

text: Homo sapiens

text: Homo sapiens

text: M

text: Homo_sapiens_cardiomyocytes_HCM_patient13


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 15

text: Homo sapiens

text: Homo sapiens

text: M

text: Homo_sapiens_cardiomyocytes_HCM_patient15


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 16

text: Homo sapiens

text: Homo sapiens

text: M

text: Myocardial samples from the subaortic septum

text: Homo_sapiens_cardiomyocytes_HCM_patient16


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 17

text: Homo sapiens

text: Homo sapiens

text: F

text: Homo_sapiens_cardiomyocytes_HCM_patient17


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 19

text: Homo sapiens

text: Homo sapiens

text: M

text: Homo_sapiens_cardiomyocytes_HCM_patient19


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens cardiomyocytes from hypertrophic cardiomyopathy patient 20

text: Homo sapiens

text: Homo sapiens

text: M

text: Homo_sapiens_cardiomyocytes_HCM_patient20


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from donors control 1

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from donors control 2

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from donors control 4

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from donors control 5

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from donors control 6

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from donors control 7

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 1

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 2

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 3

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 4

text: Homo sapiens

text: Homo sapiens

text: F

text: Myocardial samples from the subaortic septum


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 5

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 6

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 7

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 8

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 9

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 10

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 11

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 12

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 13

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 14

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 15

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 16

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 17

text: Homo sapiens

text: Homo sapiens

text: F


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 18

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 19

text: Homo sapiens

text: Homo sapiens

text: M


text: Italian National Institute of Health

text: public

text: human

text: Homo sapiens arterioles from hypertrophic cardiomyopathy patient 20

text: Homo sapiens

text: Homo sapiens

text: M


text: jhuang

text: public

text: Institute for Infectious Diseases and Zoonoses, Department for Veterinary Sciences, LMU Munich, 80539 Munich, Germany

characteristic: collecting institution

characteristic: collection date

text: Robert Fux and Gerd Sutter

characteristic: collector name

text: brown trout

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: river Iller

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: Brown Trout

characteristic: host common name

text: diseased

characteristic: host health state

text: Salmo trutta fario

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Salmo trutta fario

characteristic: receipt date

text: Salmo trutta fario

text: BEAW all samples


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Kennel Club Genetics Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:The Kennel Club Genetics Centre

text: Bearded Collie

characteristic: breed

text: dog

characteristic: common name

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Bearded Collie WGS

characteristic: title


text: The Kennel Club Genetics Centre

text: public

characteristic: Submitter Id

text: Bloodhound

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Bloodhound WGS


text: The Kennel Club Genetics Centre

text: public

text: Border Terrier

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Border Terrier WGS


text: The Kennel Club Genetics Centre

text: public

text: Retriever (Chesapeake Bay)

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Retriever (Chesapeake Bay) WGS


text: The Kennel Club Genetics Centre

text: public

text: Finnish Lapphund

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Finnish Lapphund WGS


text: The Kennel Club Genetics Centre

text: public

text: Retriever (Golden)

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Retriever (Golden) WGS


text: The Kennel Club Genetics Centre

text: public

text: Japanese Akita Inu

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Japanese Akita Inu WGS


text: The Kennel Club Genetics Centre

text: public

text: Siberian Husky

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Siberian Husky WGS


text: The Kennel Club Genetics Centre

text: public

text: Tibetan Spaniel

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Tibetan Spaniel WGS


text: The Kennel Club Genetics Centre

text: public

text: Bedlington Terrier

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Bedlington Terrier WGS


text: The Kennel Club Genetics Centre

text: public

text: English Setter

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: English Setter WGS


text: The Kennel Club Genetics Centre

text: public

text: Spaniel (Field)

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Spaniel (Field) WGS


text: The Kennel Club Genetics Centre

text: public

text: Lagotto Romagnolo

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Lagotto Romagnolo WGS


text: The Kennel Club Genetics Centre

text: public

text: Miniature Schnauzer

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Miniature Schnauzer WGS


text: The Kennel Club Genetics Centre

text: public

text: Cesky Terrier

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Cesky Terrier WGS


text: The Kennel Club Genetics Centre

text: public

text: Dalmatian

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Dalmatian WGS


text: The Kennel Club Genetics Centre

text: public

text: Affenpinscher

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Affenpinscher WGS


text: The Kennel Club Genetics Centre

text: public

text: Alaskan Malamute

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Alaskan Malamute WGS


text: The Kennel Club Genetics Centre

text: public

text: Boxer

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Boxer WGS


text: The Kennel Club Genetics Centre

text: public

text: Briard

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Briard WGS


text: The Kennel Club Genetics Centre

text: public

text: Chow Chow

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Chow Chow WGS


text: The Kennel Club Genetics Centre

text: public

text: Chinese Crested

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Chinese Crested WGS


text: The Kennel Club Genetics Centre

text: public

text: Dandie Dinmont Terrier

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Dandie Dinmont Terrier WGS


text: The Kennel Club Genetics Centre

text: public

text: Retriever (Golden)

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Retriever (Golden) WGS


text: The Kennel Club Genetics Centre

text: public

text: Irish Wolfhound

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Irish Wolfhound WGS


text: The Kennel Club Genetics Centre

text: public

text: Leonberger

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger WGS


text: The Kennel Club Genetics Centre

text: public

text: Large Munsterlander

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Large Munsterlander WGS


text: The Kennel Club Genetics Centre

text: public

text: Retriever (Labrador)

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Retriever (Labrador) WGS


text: The Kennel Club Genetics Centre

text: public

text: Lakeland Terrier

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Lakeland Terrier WGS


text: The Kennel Club Genetics Centre

text: public

text: Norwegian Buhund

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Norwegian Buhund WGS


text: The Kennel Club Genetics Centre

text: public

text: Old English Sheepdog

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Old English Sheepdog WGS


text: The Kennel Club Genetics Centre

text: public

text: Papillon

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Papillon WGS


text: The Kennel Club Genetics Centre

text: public

text: Tibetan Terrier

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Tibetan Terrier WGS


text: NORWEGIAN VETERINARY INSTITUTE

text: public

characteristic: collection date

text: Thailand

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Sus domesticus

characteristic: host scientific name

text: Pig

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NORWEGIAN VETERINARY INSTITUTE

text: public

text: Thailand

text: healthy

text: Homo sapiens

characteristic: isolate

text: human

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: IQUIBICEN-CONICET

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: Protocols: P. extremaustralis / pBAD18-sRNA40 and P. extremaustralis / pBAD18 strains were grown under microaerobic conditions for 24h as previously indicated. Cells were harvested after 10 min of induction with 0.1% arabinose. RNA was isolated using the Trizol method. RNA quality was analyzed on the Agilent Bioanalyzer and rRNA depletion was performed using the RiboZERO (Illumina). Samples were validated using an Agilent 2100 Bioanalyzer (Agilent Technologies). Libraries were prepared with TruSeq RNA Library Prep Kit v2 (Illumina)

characteristic: description

characteristic: genotype

text: microaerobiosis

characteristic: growth condition

text: Pseudomonas extremaustralis

text: Pseudomonas extremaustralis

text: Pseudomonas extremaustralis

text: 0.1 percent arabinose for 10 minutes

characteristic: stimulus

unit: hour

characteristic: time


text: Not provided

characteristic: ArrayExpress-Phenotype

text: Graphomya maculata

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Graphomya maculata

characteristic: common name

text: Graphomya maculata

characteristic: organism

text: Graphomya maculata

characteristic: title


text: Graphomya maculata

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Graphomya maculata

text: Graphomya maculata

text: Graphomya maculata


text: metagenome

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: metagenome

text: metagenome

text: metagenome


text: metagenome

text: SC

text: public

text: metagenome

text: metagenome

text: DNA Extracted for human faeces

text: metagenome