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characteristic: environment (feature)

characteristic: environment (material)

text: Ethiopia

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: Ethiopian chicken caecal microbiota

text: metagenome


text: Addis Ababa University

text: public

text: metagenome

text: Shotgun metagenomic sequences for chicken sample Hadush_Adi_T20

text: Gallus gallus

text: Ethiopia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Ethiopian chicken caecal microbiota

characteristic: project name

text: metagenome

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Addis Ababa University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Shotgun metagenomic sequences for chicken sample Mihquan_T5

text: Gallus gallus

text: Ethiopia

text: host-associated

text: metagenome

text: metagenome

text: Ethiopian chicken caecal microbiota

text: metagenome


text: Addis Ababa University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

characteristic: common name

text: Shotgun metagenomic sequences for chicken sample Mihquan_T6

characteristic: description

text: Gallus gallus

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Ethiopia

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: Ethiopian chicken caecal microbiota

text: metagenome


text: Addis Ababa University

text: public

text: metagenome

text: Shotgun metagenomic sequences for chicken sample Mihquan_T7

text: Gallus gallus

text: Ethiopia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Ethiopian chicken caecal microbiota

characteristic: project name

text: metagenome

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Addis Ababa University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Shotgun metagenomic sequences for chicken sample Mihquan_T8

text: Gallus gallus

text: Ethiopia

text: host-associated

text: metagenome

text: metagenome

text: Ethiopian chicken caecal microbiota

text: metagenome


unit: mg Chl/m3

characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

unit: m

characteristic: Depth

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

text: tbd

characteristic: Further Details

text: EMBL-EBI

text: public

characteristic: Last Update Date

unit: DD

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: (search radius=5 degrees) Marine Ecoregion:Alboran Sea (MRGID:3324)

characteristic: Marine Region

unit: µmol/L

characteristic: Nitrate Sensor

unit: µmol/kg

characteristic: Oxygen Sensor

characteristic: Protocol Label

characteristic: SRA accession

unit: practical salinity unit

characteristic: Salinity Sensor

text: PLANKTON NET, TYPE=Bongo, MESH_Size_(�m)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3

characteristic: Sample Collection Device

text: This version can be used to provide data discovery services

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Submitter Id

unit: ºC

characteristic: Temperature

text: marine biome (ENVO:00000447)

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: particulate matter, including plankton (ENVO:xxxxxxxx)

characteristic: environmental medium

text: water

characteristic: environmental package

text: surface water layer (ENVO:00002042)

characteristic: local environmental context

text: Homo sapiens

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: Homo sapiens

text: Test Sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VRIJE UNIVERSITEIT BRUSSEL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

text: Full bacterial 16S rRNA gene and ITS1 region of the fungal ITS

characteristic: description

text: Yes

text: Costa Rica

characteristic: geographic location (country and/or sea)

text: Fermenting cocoa pulp-bean mass

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: title


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

characteristic: Submitter Id

text: Full bacterial 16S rRNA gene

text: Yes

text: Costa Rica

text: Fermenting cocoa pulp-bean mass

text: food fermentation metagenome

text: food fermentation metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Full bacterial 16S rRNA gene, ITS1 region of the fungal ITS, and metagenome

text: Yes

text: Costa Rica

text: Fermenting cocoa pulp-bean mass

text: food fermentation metagenome

text: food fermentation metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: ITS1 region of the fungal ITS

text: Yes

text: Costa Rica

text: Fermenting cocoa pulp-bean mass

text: food fermentation metagenome

text: food fermentation metagenome


text: Control

characteristic: ArrayExpress-PHENOTYPE

text: female

characteristic: ArrayExpress-SEX

text: Homo Sapiens

characteristic: ArrayExpress-SPECIES

text: Female

characteristic: GENDER

text: SC

text: public

text: Control

characteristic: PHENOTYPE

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Institute of Molecular Genetics of the Czech Academy of Sciences

unit: week

characteristic: age

text: A

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: mixed epithelial and intraepithelial cell

text: house mouse

text: Protocols: For isolation of epithelial cells, mice were euthanized by cervical dislocation, their small intestine was dissected, and epithelial cells were isolated by serial incubation in HBSS + 3% FBS + 2mM EDTA followed by digestion in TrypLE Express enzyme. Intraepithelial cells were isolated in the same manner, but due to their lower frequency in the epithelial fraction they were enriched using 40%/80% percol gradient centrifugation. Lamina propria cells were isolated by the same protocol, but the epithelial fraction was discarded and remaining tissue was used further. This tissue was then minced, digested in collagenase D and DNAse I and immune cells were enriched using 40%/80% percol gradient centrifugation. Single cell suspension of intestinal epithelial cells, lamina propria cells or intraepithelial cells was sorted by flow cytometry as live, single cells. On the top of that, epithelial cells were sorted as CD45- EpCAM+, lamina propria cells and intraepithelial cells were sorted as CD45+. Mice from Jackson laboratories were treated by peroral colonization with 50 microliters of cecal content from SFB monoassociated animals at 21 and 22 days of age or left untreated. Software cellranger (10x Genomics) version 6.1.1 was used to demultiplex fastq files from Illumina bcl files with default parameters. Resulting per-lane fastq files were merged into single file per sample and renamed according to the sequencing batch (_A or _B suffix). First-strand cDNA was extracted from cell suspension during library preparation routine using Chromium next gem single-cell 3′ reagent kit (version 3.1). Single-cell RNA-seq libraries were prepared using Chromium controller instrument and Chromium Next Gem single-cell 3’ reagent kit version 3.1 (both 10X Genomics, Pleasanton, CA, USA) according to the manufacturer’s protocol targeting 4000 cells per sample.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed CD45- EpCAM+ and CD45 +

characteristic: immunophenotype

text: A

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: epithelium of small intestine

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: External Id

text: Institute of Molecular Genetics of the Czech Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: A

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: wild type genotype

text: mixed CD45- EpCAM+ and CD45 +

text: B

text: not applicable

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: age

text: A;B

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: CD45 positive

text: A

text: not applicable

text: Mus musculus

text: Mus musculus

text: lamina propria of small intestine

text: Mus musculus

text: female


characteristic: External Id

characteristic: INSDC center name

text: public

text: A;B

text: ArrayExpress

text: epithelial cell

text: house mouse

text: adult

text: wild type genotype

text: CD45 positive

characteristic: immunophenotype

text: B

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lamina propria of small intestine

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


name: E-MTAB-12363:P88-1, PI 88788 roots replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HENAN AGRICULTURAL UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HENAN AGRICULTURAL UNIVERSITY

characteristic: Submitter Id

text: ArrayExpress

text: soybean

text: PI 88788

characteristic: cultivar

text: Protocols: The soybean seeds were pre-germinated on moistened filter paper in a plant growth chamber at 27 °C, 85% ambient humidity and a 16:8 (light: dark) photoperiod for 3-4 days. The seedlings were then transferred into tubes (5 cm 3 30 cm) with sandy soil at 27°C under 16 h of light in the greenhouse. When the plants had three fully expanded trifoliate leaves, roots were harvested, flash frozen in liquid nitrogen, ground to powder, and stored at -80 °C until the next step. For each sample, three biological replicates were set up. The soybean seeds were pre-germinated on moistened filter paper in a plant growth chamber at 27 °C, 85% ambient humidity and a 16:8 (light: dark) photoperiod for 3-4 days. The seedlings were then transferred into tubes (5 cm 3 30 cm) with sandy soil at 27°C under 16 h of light in the greenhouse. The root samples were ground into two parts, one of which was used to extract total RNAs using TRIZOL reagent (Invitrogen, CA, USA) following the manufacturer's procedure. The total RNA concentration and purity were assayed with a NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies, Wilmington, DE, USA). The RNA integrity was assessed on an Agilent 2100 Bioanalyzer Lab-on-Chip system (Agilent Technologies, Palo Alto, CA, USA). The construction of cDNA libraries was according to the protocol for the mRNA-Seq sample preparation kit (Illumina, San Diego, USA). The clustering of samples was performed on a cBot Cluster Generation System using TruSeq PE Cluster Kit v3-cBot-HS (Illumia, San Diego, USA) according to the manufacturer’s instructions.

characteristic: description

text: V3 stage

text: pool of six roots

text: Glycine max

text: Glycine max

text: root

characteristic: replicate

text: Glycine max

text: P88-1, PI 88788 roots replicate 1

characteristic: title


name: E-MTAB-12363:P88-2, PI 88788 roots replicate 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HENAN AGRICULTURAL UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: soybean

characteristic: common name

text: PI 88788

text: V3 stage

characteristic: developmental stage

text: pool of six roots

characteristic: individual

text: Glycine max

text: Glycine max

text: root

text: Glycine max

text: P88-2, PI 88788 roots replicate 2


name: E-MTAB-12363:P88-3, PI 88788 roots replicate 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HENAN AGRICULTURAL UNIVERSITY

characteristic: INSDC first public

text: public

text: ArrayExpress

text: soybean

text: PI 88788

text: V3 stage

text: pool of six roots

text: Glycine max

characteristic: organism

text: Glycine max

text: root

characteristic: organism part

text: Glycine max

text: P88-3, PI 88788 roots replicate 3


name: E-MTAB-12363:PEK-1, Peking roots replicate 1

text: HENAN AGRICULTURAL UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: soybean

text: Peking

characteristic: cultivar

text: V3 stage

text: pool of six roots

text: Glycine max

text: Glycine max

text: root

text: Glycine max

text: PEK-1, Peking roots replicate 1


name: E-MTAB-12363:PEK-2, Peking roots replicate 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HENAN AGRICULTURAL UNIVERSITY

text: public

text: ArrayExpress

text: soybean

text: Peking

characteristic: description

text: V3 stage

text: pool of six roots

text: Glycine max

text: Glycine max

text: root

characteristic: replicate

text: Glycine max

text: PEK-2, Peking roots replicate 2

characteristic: title


name: E-MTAB-12363:PEK-3, Peking roots replicate 3

text: HENAN AGRICULTURAL UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: soybean

characteristic: common name

text: Peking

text: V3 stage

characteristic: developmental stage

text: pool of six roots

text: Glycine max

text: Glycine max

text: root

text: Glycine max

text: PEK-3, Peking roots replicate 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Shanghai Tenth People's Hospital

characteristic: INSDC first public

text: public

tag: Namespace:Shanghai Tenth People's Hospital

text: ArrayExpress

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

text: wild type genotype

characteristic: genotype

text: YPD broth

characteristic: growth condition

text: euploid revertant

characteristic: karyotype

text: Candida albicans

characteristic: organism

text: Candida albicans

text: whole organism

text: Candida albicans

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Shanghai Tenth People's Hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: YPD broth

text: euploid

text: Candida albicans

text: Candida albicans

text: whole organism

characteristic: organism part

text: Candida albicans


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universita degli studi di Milano

characteristic: INSDC first public

text: public

tag: Namespace:Universita degli studi di Milano

text: microbiome from mouse in the group NH subjected to OttaBac treatment

characteristic: description

text: bacterium

text: bacterium


text: Universita degli studi di Milano

text: public

text: microbiome from mouse in the group MS subjected to Placebo treatment

text: bacterium

characteristic: organism

text: bacterium


text: Universita degli studi di Milano

text: public

text: microbiome from mouse in the group MS subjected to OttaBac treatment

text: bacterium

text: bacterium


text: Universita degli studi di Milano

text: public

text: microbiome from mouse in the group NH subjected to Placebo treatment

text: bacterium

text: bacterium


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11045

text: house mouse

text: Mammary inflammation during 1st lactation. Mammary tissue was collected during 1st lactation 4 hours post LPS injection.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

characteristic: strain

text: Mammary gland

text: mammary tissue LH5-1_10


characteristic: ENA-LAST-UPDATE

text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11046

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH5-1_20


characteristic: External Id

text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11047

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH5-1_8


text: INRAE

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11048

text: house mouse

text: Mammary inflammation in both 1st and 2nd lactations. Mammary tissue was collected during 2nd lactation 4 hours post LPS injection. The same mouse had previously undergone LPS-induced mammary inflammation during 1st lactation.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH5-2_10


text: INRAE

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11049

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH5-2_20


text: INRAE

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11050

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH5-2_8


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11051

characteristic: Submitter Id

text: house mouse

text: No inflammation. Mammary tissue was collected during 1st lactation 4 hours post PBS injection.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH7-1_11


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:462-11052

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH7-1_15


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11053

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH7-1_4


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11054

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH7-1_5


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11055

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH7-1_9


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11056

text: house mouse

text: No inflammation. Mammary tissue was collected during 2nd lactation 4 hours post PBS injection. The same mouse had previously received an intramammary PBS injection during 1st lactation.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH7-2_11


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11057

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH7-2_15


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11058

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-1_257


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11059

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-1_264


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11060

text: house mouse

text: Mammary inflammation during 1st lactation. Mammary tissue was collected during 1st lactation 4 hours post LPS injection

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-1_281


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11061

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-1_290


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11062

text: house mouse

text: Mammary inflammation in 1st, but not 2nd lactation. Mammary tissue was collected during 2nd lactation 4 hours post PBS injection. The same mouse had previously undergone LPS-induced mammary inflammation during 1st lactation.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_201


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11063

text: house mouse

text: Mammary inflammation in both 1st and 2nd lactations. Mammary tissue was collected during 2nd lactation 4 hours post LPS injection. The same mouse had previously undergone LPS-induced mammary inflammation during 1st lactation.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_209


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11064

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_221


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11065

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_225


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11066

text: house mouse

text: Mammary inflammation in 2nd, but not 1st lactation. Mammary tissue was collected during 2nd lactation 4 hours post LPS injection. The same mouse had previously received an intramammary PBS injection during 1st lactation.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_234


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11067

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_235


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11068

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_236


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11069

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_240


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11070

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_243


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11071

text: house mouse

text: No inflammation. Mammary tissue was collected during 2nd lactation 4 hours post PBS injection. The same mouse had previously received an intramammary PBS injection during 1st lactation.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_244


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11072

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_259


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11073

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_264


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:463-11074

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_265


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:464-11075

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_266


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:464-11076

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_281


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:464-11077

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_289


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:464-11078

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_290


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:464-11079

text: house mouse

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_291


text: INRAE

text: public

text: ena-SAMPLE-TAB-29-11-2022-16:10:41:464-11080

text: house mouse

text: Mammary inflammation in both 1st and 2nd lactations. Mammary tissue was collected during 2nd lactation 4 hours post LPS injection. The same mouse had previously undergone LPS-induced mammary inflammation during 1st lactation.

text: Lactation

text: Mus musculus

text: Mus musculus

text: FVB/N

text: Mammary gland

text: mammary tissue LH8-2_293


text: public

tag: Namespace:University of Graz, Institute of Pharmaceutical Sciences

text: baker's yeast

text: CM3_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: University of Graz, Institute of Pharmaceutical Sciences

text: public

text: baker's yeast

text: CM15_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM27_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM37_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM47_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM57_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM4_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM16_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM28_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM38_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM48_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM58_NF2Iso7_Interaction _pBTM116-D9_AOF_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM5_NF2Iso7_Interaction _pBTM116-D9_PIK3R3_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM17_NF2Iso7_Interaction _pBTM116-D9_PIK3R3_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM29_NF2Iso7_Interaction _pBTM116-D9_PIK3R3_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM39_NF2Iso7_Interaction _pBTM116-D9_PIK3R3_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM49_NF2Iso7_Interaction _pBTM116-D9_PIK3R3_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: University of Graz, Institute of Pharmaceutical Sciences

text: public

text: baker's yeast

text: CM59_NF2Iso7_Interaction _pBTM116-D9_PIK3R3_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM6_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM18_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM30_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM40_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM50_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM60_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM7_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM19_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM31_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM41_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM51_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM61_NF2Iso7_Interaction _pBTM116-D9_EMILIN_Abl2

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM8_NF2Iso7_Interaction _pBTM116-D9_NF2Iso1C_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM20_NF2Iso7_Interaction _pBTM116-D9_NF2Iso1C_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM32_NF2Iso7_Interaction _pBTM116-D9_NF2Iso1C_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: University of Graz, Institute of Pharmaceutical Sciences

text: public

text: baker's yeast

text: CM42_NF2Iso7_Interaction _pBTM116-D9_NF2Iso1C_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM52_NF2Iso7_Interaction _pBTM116-D9_NF2Iso1C_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: CM62_NF2Iso7_Interaction _pBTM116-D9_NF2Iso1C_Abl2KD

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


E-MTAB-12399:Sample 1

text: public

text: E-MTAB-12399:Sample 1

tag: Namespace:Sun Yat-sun University Zhongshan Ophathlamic Center

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: crab-eating macaque

text: Protocols: Total 6 monkeys (4-15 years old, Macaca fascicularis) were used in the current project. All procedures complied with the NIH Guide for the Care and Use of Laboratory Animals approved by Sun Yat-sen University. Following 2 weeks of adaptive housing in the institutional animal facility, animals were anesthetized with a lethal dose of sodium pentobarbital. Animals were transcardially perfused with 2 liters of artificial cerebrospinal fluid. The flow of perfusion fluid was adjusted so that the perfusion finished within approximately 20 minutes. The brain was removed from the skull immediately and a block of tissue containing the hippocampus was cut off. The position of hippocampus referred to the atlas of the rhesus monkey brain (Saleem and Logothetis, 2012). The tissue block was kept in the ACSF and sectioned on a vibratome (VT1200S, Leica) in 300 um thick slices. The adherent tissues around the hippocampus of each slice were removed on ice and only the regions of interest were kept for dissociation. 10X single cell isolation protocol 10X Genomics Chromium platform

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: individual 1

characteristic: individual

text: not applicable

characteristic: isolate

text: Macaca fascicularis

text: Macaca fascicularis

text: prefrontal cortex

characteristic: organism part

text: Macaca fascicularis

text: Sample 1


E-MTAB-12399:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sun Yat-sun University Zhongshan Ophathlamic Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12399:Sample 2

text: ArrayExpress

text: crab-eating macaque

characteristic: common name

text: adult

text: wild type genotype

text: individual 2

text: not applicable

text: Macaca fascicularis

text: Macaca fascicularis

text: prefrontal cortex

text: Macaca fascicularis

text: Sample 2

characteristic: title


E-MTAB-12399:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-12399:Sample 3

text: ArrayExpress

text: crab-eating macaque

characteristic: description

text: adult

text: wild type genotype

text: individual 3

text: not applicable

text: Macaca fascicularis

characteristic: organism

text: Macaca fascicularis

text: prefrontal cortex

text: Macaca fascicularis

text: Sample 3


E-MTAB-12399:Sample 4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12399:Sample 4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: crab-eating macaque

text: adult

text: wild type genotype

text: individual 4

text: not applicable

text: Macaca fascicularis

text: Macaca fascicularis

text: prefrontal cortex

text: Macaca fascicularis

text: Sample 4


E-MTAB-12399:Sample 5

text: public

text: E-MTAB-12399:Sample 5

text: ArrayExpress

text: crab-eating macaque

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: individual 5

characteristic: individual

text: not applicable

characteristic: isolate

text: Macaca fascicularis

text: Macaca fascicularis

text: primary visual cortex

characteristic: organism part

text: Macaca fascicularis

text: Sample 5


E-MTAB-12399:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12399:Sample 6

text: ArrayExpress

text: crab-eating macaque

characteristic: common name

text: adult

text: wild type genotype

text: individual 6

text: not applicable

text: Macaca fascicularis

text: Macaca fascicularis

text: primary visual cortex

text: Macaca fascicularis

text: Sample 6


E-MTAB-12399:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-12399:Sample 7

text: ArrayExpress

text: crab-eating macaque

characteristic: description

text: adult

text: wild type genotype

text: individual 7

text: not applicable

text: Macaca fascicularis

text: Macaca fascicularis

text: primary visual cortex

text: Macaca fascicularis

text: Sample 7

characteristic: title


text: Shanghai Tenth People's Hospital

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: chlorothalonil

characteristic: compound

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

unit: microgram per milliliter

characteristic: dose

text: YPD plate

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

characteristic: organism

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:724-30235

tag: Namespace:Leibniz Institute for Natural Product Research and Infection Biology

text: metagenome

text: metagenome

text: Mice faeces


text: Leibniz Institute for Natural Product Research and Infection Biology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30236

text: metagenome

text: metagenome

text: Mice faeces


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30237

text: metagenome

text: metagenome

text: Mice faeces


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30238

text: metagenome

text: metagenome

text: Mice faeces


characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30239

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30240

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30241

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30242

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30243

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30244

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30245

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30246

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30247

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30248

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30249

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30250

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30251

text: metagenome

text: metagenome

text: Mice faeces


text: Leibniz Institute for Natural Product Research and Infection Biology

text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30252

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30253

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30254

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30256

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:725-30258

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:726-30265

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-02-12-2022-15:42:27:726-30272

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:882-31852

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:882-31858

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:882-31864

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:883-31870

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:883-31877

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:883-31883

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:884-31889

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:884-31898

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:884-31904

text: metagenome

text: metagenome

text: Mice faeces


text: Leibniz Institute for Natural Product Research and Infection Biology

text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:884-31910

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:885-31916

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:885-31923

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:885-31928

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:886-31934

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:886-31939

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:886-31945

text: metagenome

text: metagenome

text: Mice faeces


text: public

text: ena-SAMPLE-TAB-04-12-2022-11:06:21:887-31949

text: metagenome

text: metagenome

text: Mice faeces


text: Addis Ababa University

text: public

text: metagenome

characteristic: common name

text: Shotgun metagenomic sequences for chicken sample Hugub_A51

characteristic: description

text: Gallus gallus

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Ethiopia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Ethiopian chicken caecal microbiota

characteristic: project name

text: metagenome

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Addis Ababa University

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Shotgun metagenomic sequences for chicken sample Surta_A84

text: Gallus gallus

text: Ethiopia

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: Ethiopian chicken caecal microbiota

text: metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Addis Ababa University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: metagenome

characteristic: common name

text: Shotgun metagenomic sequences for chicken sample Kido_B21

characteristic: description

text: Gallus gallus

characteristic: environment (biome)

characteristic: environment (feature)

text: Ethiopia

text: host-associated

text: metagenome

text: metagenome

text: Ethiopian chicken caecal microbiota

text: metagenome


text: Addis Ababa University

text: public

text: metagenome

text: Shotgun metagenomic sequences for chicken sample Meseret_O81

text: Gallus gallus

characteristic: environment (material)

text: Ethiopia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Ethiopian chicken caecal microbiota

characteristic: project name

text: metagenome

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Shanghai Tenth People's Hospital

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

text: wild type genotype

characteristic: genotype

text: YPD broth

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

characteristic: organism

text: Cryptococcus neoformans var. grubii H99

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans var. grubii H99

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Shanghai Tenth People's Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: description

text: aneuploid

text: YPD broth

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:The Francis Crick Institute UK Dementia Research Institute at King's College London

text: ArrayExpress

text: NGN2 OPTi-OX hiPSC

text: cortical neuron

text: human

characteristic: common name

text: Protocols: The hIPSC cell line used has been published in the following paper: NGN2 OPTi-OX hiPSCs https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390118/ . WT i-neurons in control (37 ºC throughout, collect at day 18), cooled (72 h at 32 ºC, day 15-18, collect at day 18) and rewarmed (72 h at 32 ºC, day 15-18, followed by 72 h at 37 ºC, day 18-21, collect at day 21) conditions were collected by detaching from tissue culture dishes. hiPSCs were enzymatically detached and dissociated into single cells using Accutase and plated into GelTrex (1:100 dilution)-coated culture plates in TeSR-E8 medium supplemented with 10 µM Rho-associated protein kinase (ROCK) inhibitor. After 24 hours (day 1), TeSR-E8 medium was changed to DMEM/F12 medium with GlutaMAX, supplemented with 1x N-2 supplement, 1x Non-Essential Amino Acids, 50 nM 2-Mercaptoethanol, 100 U/mL Penicillin-Streptomycin, and 1 µg/mL Doxycycline Hyclate (Dox) (iN-1 medium). After 24 hours (day 2), the medium was replaced with the same medium as the previous day. From day 3 to day 6, the culture was fed daily with Neurobasal medium supplemented with 1x B-27 supplement (minus vitamin A), 1x GlutaMAX, 50 nM 2-Mercaptoethanol, 100 U/mL Penicillin-Streptomycin, and 1 µg/mL Dox, 10 ng/mL Neurotrophin-3 (NT-3), and 10 ng/mL Brain-derived neurotrophic factor (BDNF) (iN-2 medium). After day 6, the medium was changed every other day. Total RNA was extracted with RNeasy Plus Mini Kit (Qiagen) following the manufacturer’s instructions. RNA concentrations of individual samples were measured using Qubit RNA Broad Range Assay Kit and their integrity was determined using Agilent TapeStation System. The library was prepared using Illumina TruSeq Stranded mRNA Library Prep following the manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: sex


text: The Francis Crick Institute UK Dementia Research Institute at King's College London

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: NGN2 OPTi-OX hiPSC

text: cortical neuron

text: human

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: induced pluripotent stem cell

text: Homo sapiens

text: male


E-MTAB-12482:Pd1222 wt ac R1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12482:Pd1222 wt ac R1

tag: Namespace:Philipps-Universitat Marburg Center for Synthetic Microbiology (Synmikro) Becker lab

text: ArrayExpress

text: Protocols: Samples for transcriptome analysis were taken in triplicates from succinate- and acetate-growing cultures of P. denitrificans Pd1222 and the Pd1222 ΔramB mutant. Strains were grown in mineral salt medium supplemented with trace elements TE3-Zn (Hahnke et al. 2014, DOI: 10.3389/fmicb.2014.00018 ) and defined carbon compounds to a total carbon concentration of 120 mM at 30°C. At OD600=0.8, cells were collected by centrifugation at 10,000 x g and 4 °C for 10 min. After removal of supernatant, cell pellets were snap-frozen in liquid nitrogen and stored at -80 °C until further usage. The Qiagen miRNeasy Kit was used for total RNA isolation starting from a pellet of 4 mL cultured cells. The pellet was resuspended in 1 mL QiAzol lysis reagent and homogenized in a FastPrep sample preparation system using Lysing Matrix B containing 0.1 mm silica beads (MP biomedicals) and the following settings: 4x 6,500 rpm for 20 sec, 15 sec break. The supernatant was transferred into a new tube and RNA isolation was performed according to the manufacturer’s instruction including the optional on column DNaseI digestion. Depletion of rRNA was performed and cDNA libraries were prepared with the Illumina® Stranded Total RNA Prep Kit (Ligation with Ribo-Zero Plus) according to the manufacturer’s instructions.

text: vegetative growth

text: wild type genotype

text: acetate

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Paracoccus denitrificans PD1222

characteristic: organism

text: Paracoccus denitrificans PD1222

text: whole organism

characteristic: organism part

text: Paracoccus denitrificans PD1222

text: Pd1222 wt ac R1

characteristic: title


E-MTAB-12482:Pd1222 wt Ac R2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Philipps-Universitat Marburg Center for Synthetic Microbiology (Synmikro) Becker lab

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12482:Pd1222 wt Ac R2

text: ArrayExpress

characteristic: description

text: vegetative growth

characteristic: developmental stage

text: wild type genotype

text: acetate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: Pd1222 wt Ac R2


E-MTAB-12482:Pd1222 wt ac R3

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12482:Pd1222 wt ac R3

text: ArrayExpress

text: vegetative growth

text: wild type genotype

text: acetate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: Pd1222 wt ac R3


E-MTAB-12482:Pd1222 wt suc R1

text: public

text: E-MTAB-12482:Pd1222 wt suc R1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: vegetative growth

text: wild type genotype

characteristic: genotype

text: succinate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: Pd1222 wt suc R1


E-MTAB-12482:Pd1222 wt suc R2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12482:Pd1222 wt suc R2

text: ArrayExpress

text: vegetative growth

text: wild type genotype

text: succinate

characteristic: growth condition

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: Pd1222 wt suc R2


E-MTAB-12482:Pd1222 wt suc R3

text: public

text: E-MTAB-12482:Pd1222 wt suc R3

text: ArrayExpress

text: vegetative growth

text: wild type genotype

text: succinate

text: not applicable

characteristic: isolate

text: Paracoccus denitrificans PD1222

characteristic: organism

text: Paracoccus denitrificans PD1222

text: whole organism

characteristic: organism part

text: Paracoccus denitrificans PD1222

text: Pd1222 wt suc R3


E-MTAB-12482:delta ramB ac R1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12482:delta ramB ac R1

text: ArrayExpress

text: vegetative growth

text: delta ramB

text: acetate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: delta ramB ac R1

characteristic: title


E-MTAB-12482:delta ramB ac R2

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12482:delta ramB ac R2

text: ArrayExpress

characteristic: description

text: vegetative growth

text: delta ramB

text: acetate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: delta ramB ac R2


E-MTAB-12482:delta ramB ac R3

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-12482:delta ramB ac R3

text: ArrayExpress

text: vegetative growth

characteristic: developmental stage

text: delta ramB

text: acetate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: delta ramB ac R3


E-MTAB-12482:delta ramB suc R1

text: public

characteristic: SRA accession

text: E-MTAB-12482:delta ramB suc R1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: vegetative growth

text: delta ramB

text: succinate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: delta ramB suc R1


E-MTAB-12482:delta ramB suc R2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12482:delta ramB suc R2

text: ArrayExpress

text: vegetative growth

text: delta ramB

characteristic: genotype

text: succinate

text: not applicable

text: Paracoccus denitrificans PD1222

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: delta ramB suc R2


E-MTAB-12482:delta ramB suc R3

text: public

text: E-MTAB-12482:delta ramB suc R3

text: ArrayExpress

text: vegetative growth

text: delta ramB

text: succinate

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Paracoccus denitrificans PD1222

characteristic: organism

text: Paracoccus denitrificans PD1222

text: whole organism

text: Paracoccus denitrificans PD1222

text: delta ramB suc R3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Institut de Biologia Evolutiva (UPF-CSIC)

text: lymphoblastoid cell line

text: human

characteristic: common name

text: Human LCL with A1a Y haplogroup

text: Tomàs Marquès Lab - IBE (UPF-CSIC)

text: Homo sapiens

text: Homo sapiens

text: Male

characteristic: sex

text: Human LCL with Y haplogroup A1a-M31


text: Institut de Biologia Evolutiva (UPF-CSIC)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: lymphoblastoid cell line

text: human

text: Human LCL with E1b Y haplogroup

characteristic: description

text: Tomàs Marquès Lab - IBE (UPF-CSIC)

text: Homo sapiens

text: Homo sapiens

text: Male

text: Human LCL with Y haplogroup E1b-P252

characteristic: title


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: lymphoblastoid cell line

text: human

text: Human LCL with H1 Y haplogroup

text: Tomàs Marquès Lab - IBE (UPF-CSIC)

text: Homo sapiens

text: Homo sapiens

text: Male

text: Human LCL with Y haplogroup H1-M52


characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: lymphoblastoid cell line

text: human

text: Human LCL with J2 Y haplogroup

text: Tomàs Marquès Lab - IBE (UPF-CSIC)

text: Homo sapiens

text: Homo sapiens

text: Male

text: Human LCL with Y haplogroup J2-M241


characteristic: External Id

text: public

text: lymphoblastoid cell line

text: human

text: Human LCL with O3 Y haplogroup

text: Tomàs Marquès Lab - IBE (UPF-CSIC)

text: Homo sapiens

text: Homo sapiens

text: Male

text: Human LCL with Y haplogroup O3-KL2


text: public

text: lymphoblastoid cell line

text: human

text: Human LCL with Q1a Y haplogroup

text: Tomàs Marquès Lab - IBE (UPF-CSIC)

text: Homo sapiens

text: Homo sapiens

text: Male

text: Human LCL with Y haplogroup Q1a-M3


text: valearen

text: public

text: human

text: Upper left incisor from human remains

text: Argentina

characteristic: geographic location (country and/or sea)

text: Beagle Channel coast, Tierra del Fuego

characteristic: geographic location (region and locality)

text: Homo sapiens

text: Homo sapiens

text: Tooth

text: Paiashauaia I burial (PZ3)


E-MTAB-12447:Rps19 R67∆/R67∆ 1

text: public

text: E-MTAB-12447:Rps19 R67∆/R67∆ 1

tag: Namespace:Biotechnology and Biomedicine Center of the Academy of Sciences and Charles University in Vestec (BIOCEV); First Faculty of Medicine; Charles University, Czech Republic

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hematopoietic multipotent progenitor cell

text: house mouse

text: Protocols: A single cell suspension of bone marrow from 6 to 8-week-old mice were obtained by flushing tibias and femurs with 1 ml ice-cold Flow Cytometry Buffer (FCB, 1x PBS with 2mM EDTA and 0.5+ACU- biotin-free BSA) using 22-gauge needles. Bone marrow hematopoietic c-kit progenitors were enriched by BD Aria II SORP cell sorter using fluorescence-activated cell sorting with anti-CD117-BV421, anti-Sca1-PE, and anti-lineage (Ter119, Gr1, Mac1, B220, Cd3e) antibody cocktail. Total RNA from FACS-sorted hematopoietic cells was isolated using TRIzol Reagent (Invitrogen) following the manufacturer's RNA isolation protocol. For preparation of NGS libraries polyadenylated mRNA from FASC-sorted c-Kit cells enriched from starting material of 100ng total RNA was processed utilizing NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs, MA, USA).

text: adult

characteristic: developmental stage

text: Diamond-Blackfan anemia

characteristic: disease

text: Rps19 R67∆/R67∆

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Rps19 R67∆/R67∆ 1


E-MTAB-12447:Rps19 R67∆/R67∆ 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Biotechnology and Biomedicine Center of the Academy of Sciences and Charles University in Vestec (BIOCEV); First Faculty of Medicine; Charles University, Czech Republic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12447:Rps19 R67∆/R67∆ 2

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Diamond-Blackfan anemia

text: Rps19 R67∆/R67∆

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Rps19 R67∆/R67∆ 2

characteristic: title


E-MTAB-12447:Rps19 R67∆/R67∆ 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-12447:Rps19 R67∆/R67∆ 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

text: Diamond-Blackfan anemia

text: Rps19 R67∆/R67∆

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Rps19 R67∆/R67∆ 3


E-MTAB-12447:Rps19 R67∆/R67∆ 4

text: public

text: E-MTAB-12447:Rps19 R67∆/R67∆ 4

text: ArrayExpress

text: house mouse

text: adult

text: Diamond-Blackfan anemia

characteristic: disease

text: Rps19 R67∆/R67∆

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Rps19 R67∆/R67∆ 4


E-MTAB-12447:Rps19 R67∆/R67∆ 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12447:Rps19 R67∆/R67∆ 5

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: Diamond-Blackfan anemia

text: Rps19 R67∆/R67∆

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Rps19 R67∆/R67∆ 5


E-MTAB-12447:Rps19 R67∆/R67∆ 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-12447:Rps19 R67∆/R67∆ 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: Diamond-Blackfan anemia

text: Rps19 R67∆/R67∆

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Rps19 R67∆/R67∆ 6

characteristic: title


E-MTAB-12447:Wild-type 1

text: public

text: E-MTAB-12447:Wild-type 1

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Wild-type 1