characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

text: 04e36b04-73aa-4fb1-b098-daf0ce43bc73-asg

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

text: coral bed surrounded by sand and living coral reef

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: fragmented using bone cutters while SCUBA diving

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

text: d6cbd9a6-e6fc-47e1-b35c-07e7a58646ce-asg

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

text: e59ad54a-31aa-4d5d-967e-86a061bc7ada-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 6ae0d535-6b0d-48c8-a0b6-8625b131b1f3-asg


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

text: e493447e-3e7e-4122-9a11-cb2f87cd4155-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

text: 6ae64782-91e4-4e16-903b-6c1ee14df6be-asg

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 42c7b8b2-4685-43e8-8731-2053582b6e53-asg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

text: fe7e6fe3-fae2-4212-8dfa-8b2c1d50dfdc-asg

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

text: 56916b55-1d0a-4adc-8b45-80fea6f87e80-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 3cc6ac11-c589-4cfa-8527-77404d85d10b-asg


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

text: 837f2b91-9ab6-450c-8192-7b9b9b18cfc9-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

text: d728ae64-e39c-4d5e-bf5c-f9427cc32e05-asg

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 97c7c27c-3891-4c32-91a9-771cd0f13f74-asg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

text: 6ece616e-ad28-4a56-84f4-e961fd6cbfdf-asg

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

text: 681ea8d9-8baf-4148-b42c-d01fd185a1a5-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 3ba501fa-b81b-459e-8403-80c01b40d7b8-asg


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: coral bed surrounded by sand and living coral reef

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

text: 1f529b52-4670-4157-866c-41bacc07911c-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: fragmented using bone cutters while SCUBA diving

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

text: 2ec1b45c-601c-442d-abcd-66b740b0bca6-asg

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: PEDRO FRADE

text: Natural History Museum Vienna

text: Curacao

characteristic: geographic location (longitude)

text: Boca Sami | Snake Bay

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

text: Agaricia lamarcki

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Agaricia lamarcki

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

text: fc781f2b-5bfb-40cc-a114-2641fcf50fb8-asg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Derby

characteristic: GAL

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: PEDRO FRADE

text: Natural History Museum Vienna

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Boca Sami | Snake Bay

characteristic: geographic location (region and locality)

characteristic: habitat

text: PEDRO FRADE

text: Natural History Museum Vienna

text: adult

characteristic: lifestage

text: Agaricia lamarcki

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample collection device or method

text: Agaricia lamarcki

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

text: cb39eeda-8720-46ac-a652-4f2985aa2d56-asg

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ICAR National Bureau of Plant Genetic Resources

characteristic: Submitter Id

text: IBDC

characteristic: broker name

text: sesame

characteristic: common name

text: Around 2500 sesame accessions were genotyped using ddRAD-seq based strategies especially to identify the SNPs and assess molecular diversity and to develop a core using the datasets. Also, the set of SNPs were chosen to prepare a panel of SNPs for chip development.

characteristic: description

text: seedling

text: Sesamum indicum

characteristic: organism

text: diploid

characteristic: ploidy

text: Sesamum indicum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ICAR National Bureau of Plant Genetic Resources

text: public

text: IBDC

text: sesame

text: seedling

text: Sesamum indicum

text: diploid

text: Sesamum indicum


text: The University of Warwick

text: public

tag: Namespace:The University of Warwick

text: ArrayExpress

text: Protocols: Bacterial cultures were grown to exponential phase at 25 or 37˚ degree celsius before samples were taken and RNAprotect (Qiagen) was added to each samples. QIAzol (Qiagen) was added to each pelleted samples before transferring to Lysing Matrix B tubes (MP Biomedicals). Cells were lysed using the FastPrep®-24 Classic instrument (MP Biomedicals) with a COOLPREP™ adapter (MP Biomedicals). Bead beating was conducted at 6 ms-1 for 40 s for 2 cycles, with a 300 s pause between cycles. Lysates were centrifuged for 1 minute at 10,000 g and supernatant extracted. an RNeasy Micro Kit (Qiagen) was then used to extract RNA following manufacturers protocol. TruSeq library prep was conducted using the Low Sample (LS) protocol and manufacturer’s instructions were followed which are detailed in the LS protocol of the TruSeq® Stranded mRNA Sample Preparation Guide (Part # 15031047 Rev. E).

characteristic: genotype

text: liquid LB medium

characteristic: growth condition

text: Bacillus cereus G9241

text: Bacillus cereus G9241

text: whole organism

characteristic: organism part

text: Bacillus cereus G9241


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Warwick

characteristic: INSDC center name

text: public

text: ArrayExpress

text: wild type genotype

text: liquid LB medium

text: Bacillus cereus G9241

text: Bacillus cereus G9241

text: whole organism

text: Bacillus cereus G9241


FSHD_ myoblast_cells

text: Imagine Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: FSHD_ myoblast_cells

tag: Namespace:Imagine Institute

text: human

text: Genomic DNA

text: Homo sapiens

text: Homo sapiens

text: FSHD_ myoblast_cells


E-MTAB-12884:Sample 1

text: Postdoctoral Researcher

text: public

characteristic: SRA accession

text: E-MTAB-12884:Sample 1

tag: Namespace:Postdoctoral Researcher

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: leukocyte

text: lumpfish

text: Protocols: Farmed lumpfish (C. lumpus L.) (weight 332.4 ± 63 g, length 17.6 cm ± 0.97 g) were obtained from a commercial breeder in Sogn & Fjordane County, Norway (Fjord Forsk Sogn AS). During quarantine, the fish were screened for pathogens before being reared in a 500L tank at the Bergen High-Technology Centre's Aquatic and Industrial Laboratory (ILAB) under normal rearing conditions with a 12h light: 12h dark light regime. The temperature of the outlet water was 8 °C, the salinity was 34 PSU, and the minimum oxygen saturation was 77%. The fish were fed with Amber Neptune commercial dry feed (1.5mm) at 2% bodyweight. The head kidney was isolated from healthy lumpfish and homogenized as described in our previous study(38). Briefly, the leukocytes were separated using discontinuous Percoll gradients a described previously (38, 39). Isolated leukocytes were resuspended in L-15+ medium ((L-15 media without L-Glutamine adjusted to 370 mOsm by adding 5% (v/v) of a solution consisting of 0.41 M NaCl 0.33 M NaHCO3 and 0.66 5 (w/v) D-glucose) supplemented with 100 μg/ml genatamicin (Lonza Biowhittaker Verviers, Belgium), 10 U/ml heparin (Lonza Biowhittaker Verviers, Belgium) and 15 mM HEPES (Sigma-Aldrich, St. louis, USA). Using a CASY TT Cell Counter (Innovatis AG, Reutlingen, Germany), the number of cells, cell viability, and aggregation factor were measured. Leukocytes from each of the 15 fish as distributed into four samples (stimulated samples which were exposed to poly(I:C)for 6 and 24 hours, and non-stimulated controls for the two time points) in 24 well plates (NUNC). Poly(I:C)(100 µg mL-1) in a total volume of 0.5 mL were added to the stimulated samples, while for non-exposed cells, L-15+ medium was added instead of poly (I:C). Following incubation at 15°C for 6 and 24 hours, the plates were centrifuged for 10 minutes at 200 x g. The supernatants were removed and lysis buffer containing β-mercaptoethanol was added to each well. The lysates were stored at -80 °C before RNA isolation. On average 24383597 (SE 906038) read pairs per sample passed the quality control steps, these reads were then aligned to the Cyclopterus lumpus genome, fCycLum1.pri, from Ensemble Release 109 (ensembl.org) using STAR 2.7.10 (40) and the with an average unique alignment rate of 70.2%. Gene counts were obtained using HTSeq 2.0 (41) using the C. lumpus gene annotations from Ensembl Release 109.Differentially expressed genes (DEGs) were determined using DESeq2 (42) between exposed and non-exposed samples at both 6 and 24 hours separately as well between all exposed and non-exposed samples using DESeq2’s functions to account for multi-factor model design. Leukocytes from each of the 15 fish as distributed into four samples (stimulated samples which were exposed to poly(I:C)for 6 and 24 hours, and non-stimulated controls for the two time points) in 24 well plates (NUNC). Poly(I:C)(100 µg mL-1) in a total volume of 0.5 mL were added to the stimulated samples, while for non-exposed cells, L-15+ medium was added instead of poly (I:C). Following incubation at 15°C for 6 and 24 hours, the plates were centrifuged for 10 minutes at 200 x g. The supernatants were removed and lysis buffer containing β-mercaptoethanol was added to each well. The lysates were stored at -80 °C before RNA isolation. Leukocytes from each of the 15 fish as distributed into four samples (stimulated samples which were exposed to poly(I:C)for 6 and 24 hours, and non-stimulated controls for the two time points) in 24 well plates (NUNC). Poly(I:C)(100 µg mL-1) in a total volume of 0.5 mL were added to the stimulated samples, while for non-exposed cells, L-15+ medium was added instead of poly (I:C). Following incubation at 15°C for 6 and 24 hours, the plates were centrifuged for 10 minutes at 200 x g. The supernatants were removed and lysis buffer containing β-mercaptoethanol was added to each well. The lysates were stored at -80 °C before RNA isolation. On average 24383597 (SE 906038) read pairs per sample passed the quality control steps, these reads were then aligned to the Cyclopterus lumpus genome, fCycLum1.pri, from Ensemble Release 109 (ensembl.org) using STAR 2.7.10 (40) and the with an average unique alignment rate of 70.2%. Gene counts were obtained using HTSeq 2.0 (41) using the C. lumpus gene annotations from Ensembl Release 109.Differentially expressed genes (DEGs) were determined using DESeq2 (42) between exposed and non-exposed samples at both 6 and 24 hours separately as well between all exposed and non-exposed samples using DESeq2’s functions to account for multi-factor model design. GeneElute Mammalian Total RNA miniprep kit (Sigma) was used to isolate total RNA in accordance with the manufacturer's instructions. Samples were treated with DNase I (Sigma) to eliminate any lingering traces of genomic DNA. One RNA sample for the RNA sequencing was made by combining total RNA (1 µg) from five fish. Three parallels were set up for RNA sequencing for each time point. After being cleaned with RNA clean & concentrator-5 (Zymo Research) in accordance with the manufacturer's instructions, the RNA was tested for quality in an Agilent 2100 bioanalyzer. The RIN values varied from 8.5 to 10 The TruSeq Stranded mRNA sample Preparation kit (Illumina®) was used by the Norwegian High Troughput Sequencing Centre to create sequencing libraries using dual indexing on a Perkin Elmer Sciclone NGSx liquid handler system. Final libraries were checked for size and adapter contamination using a standard sensitivity Fragment analyzer NGS kit, and library concentration using qPCR with Kapa Library quantification kit for Illumina (Kapa Biosciences). Paired RNA sequencing was performed on an Illumina HiSeq4000.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

characteristic: stimulus

text: Sample 1


E-MTAB-12884:Sample 10

characteristic: ENA-CHECKLIST

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 10

text: ArrayExpress

text: leukocyte

text: lumpfish

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

characteristic: organism

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 10

characteristic: title


E-MTAB-12884:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 11

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

characteristic: organism part

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 11


E-MTAB-12884:Sample 12

characteristic: External Id

text: Postdoctoral Researcher

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12884:Sample 12

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 12


E-MTAB-12884:Sample 13

text: Postdoctoral Researcher

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12884:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 13


E-MTAB-12884:Sample 14

characteristic: ENA-CHECKLIST

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 14

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

characteristic: stimulus

text: Sample 14


E-MTAB-12884:Sample 15

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 15

text: ArrayExpress

text: leukocyte

text: lumpfish

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

characteristic: organism

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 15

characteristic: title


E-MTAB-12884:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 16

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

characteristic: organism part

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 16


E-MTAB-12884:Sample 17

characteristic: External Id

text: Postdoctoral Researcher

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12884:Sample 17

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 17


E-MTAB-12884:Sample 18

text: Postdoctoral Researcher

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12884:Sample 18

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 18


E-MTAB-12884:Sample 19

characteristic: ENA-CHECKLIST

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 19

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

characteristic: stimulus

text: Sample 19


E-MTAB-12884:Sample 2

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 2

text: ArrayExpress

text: leukocyte

text: lumpfish

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

characteristic: organism

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 2

characteristic: title


E-MTAB-12884:Sample 20

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 20

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

characteristic: organism part

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 20


E-MTAB-12884:Sample 21

characteristic: External Id

text: Postdoctoral Researcher

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12884:Sample 21

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 21


E-MTAB-12884:Sample 22

text: Postdoctoral Researcher

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12884:Sample 22

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 22


E-MTAB-12884:Sample 23

characteristic: ENA-CHECKLIST

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 23

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

characteristic: stimulus

text: Sample 23


E-MTAB-12884:Sample 24

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 24

text: ArrayExpress

text: leukocyte

text: lumpfish

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

characteristic: organism

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 24

characteristic: title


E-MTAB-12884:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 3

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

characteristic: organism part

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 3


E-MTAB-12884:Sample 4

characteristic: External Id

text: Postdoctoral Researcher

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12884:Sample 4

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 4


E-MTAB-12884:Sample 5

text: Postdoctoral Researcher

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12884:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 5


E-MTAB-12884:Sample 6

characteristic: ENA-CHECKLIST

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 6

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

characteristic: stimulus

text: Sample 6


E-MTAB-12884:Sample 7

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 7

text: ArrayExpress

text: leukocyte

text: lumpfish

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

characteristic: organism

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 7

characteristic: title


E-MTAB-12884:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Postdoctoral Researcher

text: public

text: E-MTAB-12884:Sample 8

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

characteristic: organism part

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 8


E-MTAB-12884:Sample 9

characteristic: External Id

text: Postdoctoral Researcher

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12884:Sample 9

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: normal

text: wild type genotype

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: poly(I:C) 100 microgram per milliliter

text: Sample 9


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IBDC

characteristic: broker name

text: sesame

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


E-MTAB-12885:Female 1

characteristic: ENA-CHECKLIST

text: UOE

text: public

text: E-MTAB-12885:Female 1

unit: week

characteristic: age

text: ArrayExpress

text: corticotroph

text: house mouse

characteristic: common name

text: Protocols: Anterior pituitary cells were acutely isolated by trypsin digestion. Each cell preparation used anterior pituitary glands collected from three animals. After dissociation, cells were resuspended in 500 μL of phosphate-buffered saline supplemented with 25 mM HEPES and 5 mM EDTA (FACS buffer) and passed through a 35-μm cell strainer that was washed with a further 200 μL of the FACS buffer. Draq7 was added as a vitality marker and cells sorted using a SH800 Cell Sorter (Sony). Gates were established using wild-type pituitaries to avoid capturing eGFP negative (−ve) cells and to select single cells. Sorted single cells were resuspended into low bind Eppendorf tubes into 300 μL of Trizol and were frozen on dry ice and stored at −80 °C until sending for sequencing. RNA isolation was conducted at Azenta Life Science (South Plainfield, NJ). Total RNA was extracted using Qiagen RNeasy Plus Mini kit following manufacturer’s instructions (Qiagen, Hilden, Germany). Extracted RNA samples were quantified using Qubit Fluorometer (Life Technologies, Carlsbad, CA, USA) and RNA integrity was checked using Agilent TapeStation (Agilent Technologies, Palo Alto, CA, USA). Library preparation was conducted at Azenta Life Science (South Plainfield, NJ). Ultra-low input RNA sequencing library was prepared by using SMART-Seq v4 Ultra Low Input Kit for Sequencing was used for full-length cDNA synthesis and amplification (Clontech, Mountain View, CA), and Illumina Nextera XT (Illumina, San Diego, CA, USA) library was used for sequencing library preparation. Briefly, cDNA was fragmented, and adaptor was added using Transposase, followed by limited-cycle PCR to enrich and add index to the cDNA fragments. The sequencing library was validated on the Agilent TapeStation (Agilent Technologies, Palo Alto, CA, USA), and quantified by using Qubit Fluorometer (ThermoFisher Scientific, Waltham, MA, USA) as well as by quantitative PCR (KAPA Biosystems, Wilmington, MA, USA).

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: disease

text: POMC-GFP

text: mixed pool of 3 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: pituitary gland

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Female 1


E-MTAB-12885:Female 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOE

text: public

text: E-MTAB-12885:Female 2

text: ArrayExpress

text: corticotroph

text: house mouse

characteristic: description

text: adult

text: wild type genotype

text: POMC-GFP

characteristic: genotype

text: mixed pool of 3 mice

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pituitary gland

characteristic: organism part

text: Mus musculus

text: female

text: Female 2

characteristic: title


E-MTAB-12885:Female 3

text: UOE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12885:Female 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: corticotroph

text: house mouse

text: adult

text: wild type genotype

text: POMC-GFP

text: mixed pool of 3 mice

text: Mus musculus

text: Mus musculus

text: pituitary gland

text: Mus musculus

text: female

text: Female 3


E-MTAB-12885:Male 1

characteristic: ENA-CHECKLIST

text: UOE

text: public

text: E-MTAB-12885:Male 1

characteristic: age

text: ArrayExpress

text: corticotroph

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: disease

text: POMC-GFP

text: mixed pool of 3 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: pituitary gland

text: Mus musculus

text: male

characteristic: sex

text: Male 1


E-MTAB-12885:Male 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOE

text: public

text: E-MTAB-12885:Male 2

text: ArrayExpress

text: corticotroph

text: house mouse

characteristic: description

text: adult

text: wild type genotype

text: POMC-GFP

characteristic: genotype

text: mixed pool of 3 mice

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pituitary gland

text: Mus musculus

text: male

characteristic: strain

text: Male 2


E-MTAB-12885:Male 3

text: UOE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12885:Male 3

text: ArrayExpress

text: corticotroph

text: house mouse

text: adult

text: wild type genotype

text: POMC-GFP

text: mixed pool of 3 mice

text: Mus musculus

text: Mus musculus

text: pituitary gland

characteristic: organism part

text: Mus musculus

text: male

text: Male 3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_e41597c5/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_b7658359/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_6452d112/2023


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_765c594e/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: SO

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SO-UHB-USB_2023_04_25_742a9d2d/2023

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_908fb300/2023


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_9f13dba3/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_a9c8a726/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_816bb5cc/2023


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_f41b36c5/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_5bfa3dc8/2023

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_a9ce462a/2023


characteristic: ENA-CHECKLIST

text: ICAR National Bureau of Plant Genetic Resources

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IBDC

text: sesame

characteristic: common name

text: Around 2500 sesame accessions were genotyped using ddRAD-seq based strategies especially to identify the SNPs and assess molecular diversity and to develop a core using the datasets. Also, the set of SNPs were chosen to prepare a panel of SNPs for chip development.

characteristic: description

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-UHB-USB_2023_04_25_36138e11/2023

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_a2fc6fc7/2023

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

text: active surveillance not initiated by an outbreak


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_06fa6930/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_ed2e4f9d/2023

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_2e943519/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_8a567faa/2023

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_7ff85fd4/2023

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_b6e4d744/2023


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_71ce119d/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_7b5575c6/2023

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_be69c606/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_d6f16f20/2023

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_a96d9970/2023

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_b357a1a9/2023


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_025d1b77/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_c0621f87/2023

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_918d1245/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_04_25_397f70a3/2023

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_04_25_0398dbcd/2023

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICAR National Bureau of Plant Genetic Resources

text: public

text: IBDC

text: sesame

characteristic: common name

text: Around 2500 sesame accessions were genotyped using ddRAD-seq based strategies especially to identify the SNPs and assess molecular diversity and to develop a core using the datasets. Also, the set of SNPs were chosen to prepare a panel of SNPs for chip development.

characteristic: description

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


text: public

text: BN_WGS_EcdcId_537BB841-AA09-57BF-9533-BE304D501818

tag: Namespace:European Centre for Disease Prevention and Control

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: not provided

text: Escherichia coli

text: Escherichia coli

text: European study of Escherichia coli carrying blaNDM-5 based on national whole genome sequencing data from 13 European Union / European Economic Area countries, 2012-2022


text: European Centre for Disease Prevention and Control

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BN_WGS_EcdcId_04E1AB47-1E53-53AD-88CA-04F0B2D14A18

text: Ireland

text: not provided

text: Homo sapiens

text: not provided

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: BN_WGS_EcdcId_AB265B2F-EB4D-524E-A7EB-A60536CF87A8

characteristic: Submitter Id

text: Ireland

text: not provided

text: Homo sapiens

text: mid stream urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: BN_WGS_EcdcId_889F2E17-42BE-58E8-9B5D-F2BC82D5EBA8

text: Ireland

text: not provided

text: Homo sapiens

text: not provided

text: Escherichia coli

text: Escherichia coli


text: public

text: BN_WGS_EcdcId_6550F25D-E40B-59DA-8F5D-ADC221DE9D50

characteristic: collection date

text: Ireland

text: not provided

text: Homo sapiens

text: not provided

text: Escherichia coli

text: Escherichia coli


text: public

text: BN_WGS_EcdcId_DC158A47-BE52-5ADD-B704-DDAB7E961874

text: Ireland

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: not provided

text: Escherichia coli

text: Escherichia coli


text: public

text: BN_WGS_EcdcId_1937B38A-6627-5BC9-9B53-CA43C78B9561

text: Spain

text: not provided

characteristic: host health state

text: Homo sapiens

text: other

text: Escherichia coli

text: Escherichia coli


text: public

text: BN_WGS_EcdcId_0A4C5C92-F214-5FE2-B23D-53EF2ED5F2BC

text: Spain

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: other

text: Escherichia coli

text: Escherichia coli


text: public

text: BN_WGS_EcdcId_153A233B-2D5F-5D9B-AB64-3EBC6B33B69E

text: Spain

text: not provided

text: Homo sapiens

characteristic: isolate

text: urine

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC center name

text: public

text: BN_WGS_EcdcId_C1BADCEA-D731-5143-B4D0-4A32D67C422B

text: Spain

text: not provided

text: Homo sapiens

text: urine

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC first public

text: public

text: BN_WGS_EcdcId_96B79586-26E2-5614-A437-D48FADB2DB6D

text: Spain

text: not provided

text: Homo sapiens

text: blood

text: Escherichia coli

text: Escherichia coli


E-MTAB-12895:Sample 1

characteristic: INSDC last update

text: public

text: E-MTAB-12895:Sample 1

tag: Namespace:Department of Medicine and Bioregulatory Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: The adrenal tumors were collected immediately upon surgical resection and stored in a deep freezer (-80°C). Total RNA from fresh frozen samples was extracted using TRIzol reagent (Thermo Fisher) according to the manufacturer’s instructions. Ribosomal RNA was removed from 100 ng of total RNA of each sample using the NEBNext rRNA Depletion Kit (Human/Mouse/Rat) (NEB, E6310). Libraries were then prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, E7760).

characteristic: description

text: adult

characteristic: developmental stage

text: Autonomous Cortisol Secretion

characteristic: disease

characteristic: fat body mass

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1

characteristic: total count


E-MTAB-12895:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Medicine and Bioregulatory Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12895:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 10

characteristic: title


E-MTAB-12895:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12895:Sample 11

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 11


E-MTAB-12895:Sample 12

text: public

text: E-MTAB-12895:Sample 12

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: Autonomous Cortisol Secretion

characteristic: disease

characteristic: fat body mass

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 12

characteristic: total count


E-MTAB-12895:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12895:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 13


E-MTAB-12895:Sample 14

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12895:Sample 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 14

characteristic: title


E-MTAB-12895:Sample 15

text: public

text: E-MTAB-12895:Sample 15

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Autonomous Cortisol Secretion

characteristic: disease

characteristic: fat body mass

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 15


E-MTAB-12895:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-12895:Sample 16

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

characteristic: sex

text: Sample 16

characteristic: total count


E-MTAB-12895:Sample 17

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12895:Sample 17

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: Non-Functioning Adrenal Cortex Adenoma

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 17


E-MTAB-12895:Sample 18

text: public

text: E-MTAB-12895:Sample 18

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Non-Functioning Adrenal Cortex Adenoma

characteristic: disease

characteristic: fat body mass

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 18

characteristic: title


E-MTAB-12895:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-12895:Sample 19

text: ArrayExpress

text: human

text: adult

text: Non-Functioning Adrenal Cortex Adenoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 19


E-MTAB-12895:Sample 2

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12895:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: male

characteristic: sex

text: Sample 2

characteristic: total count


E-MTAB-12895:Sample 3

text: public

text: E-MTAB-12895:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Autonomous Cortisol Secretion

characteristic: disease

characteristic: fat body mass

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-12895:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-12895:Sample 4

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 4

characteristic: title


E-MTAB-12895:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12895:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 5


E-MTAB-12895:Sample 6

text: public

text: E-MTAB-12895:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Autonomous Cortisol Secretion

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

characteristic: sex

text: Sample 6

characteristic: total count


E-MTAB-12895:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-12895:Sample 7

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

characteristic: disease

characteristic: fat body mass

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 7


E-MTAB-12895:Sample 8

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12895:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: Autonomous Cortisol Secretion

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal cortex

text: Homo sapiens

text: female

text: Sample 8

characteristic: title


E-MTAB-12895:Sample 9

text: public

text: E-MTAB-12895:Sample 9

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Autonomous Cortisol Secretion

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: adrenal cortex

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-12973:Dox Dox Pre-HPCs_1b

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Dox Pre-HPCs_1b

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: pre-hematopoietic progenitor cell

text: house mouse

text: Protocols: The doxycycline-inducible ESC line was generated using the inducible cassette exchange method, the constructs and plasmids described in Bergiers et al., 2018; Iacovino et al., 2011; Vargel et al., 2016. Through gene synthesis (GenScript) and cloning, the p2lox-3TFs plasmids was generated and consequently transfected into A2.lox ESCs (kindly provided by Dr. Michael Kyba - University of Minnesota). The deletion of the Tal1 gene to generate the i3TFs Tal1Δ/Δ mESC lines was achieved using the Crispr/CAS9 technology as described in Serina Secanechia et al., 2022. ESCs were maintained, expanded and differentiated as described in Serina Secanechia et al., 2022. Cells were FACS sorted from the hematopoietic ‘hemangioblast culture’ as described in Serina Secanechia et al., 2022. RNA-seq library preparation and sequencing were performed as described in Picelli et al., 2014 and Serina Secanechia et al., 2022

text: embryo

text: gene knock in combined with biallelic deletion of endogenous Tal1 gene

characteristic: genetic modification

text: knock in of hematopoietic genes Tal1, Lyl1 and Lmo2 under a dox-inducible promoter in ∆Tal1/∆Tal1 background

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

text: male

characteristic: sex

text: doxycycline (1µg/mL)

characteristic: stimulus

text: EB: doxycycline; Hemangioblast: doxycycline

characteristic: stimulus schedule

text: Dox Dox Pre-HPCs_1b


E-MTAB-12973:Dox Dox HP_1a

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Dox HP_1a

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: hematopoietic progenitor cell

text: house mouse

characteristic: common name

text: embryo

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Dox HP_1a

characteristic: title


E-MTAB-12973:Dox Unt Endo_2a

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Unt Endo_2a

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: endothelial cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: EB: doxycycline; Hemangioblast: untreated

text: Dox Unt Endo_2a


E-MTAB-12973:Dox Unt Endo_2b

text: EMBL

text: public

text: E-MTAB-12973:Dox Unt Endo_2b

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: endothelial cell

text: house mouse

text: embryo

characteristic: genetic modification

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

text: male

characteristic: sex

text: doxycycline (1µg/mL)

characteristic: stimulus

characteristic: stimulus schedule

text: Dox Unt Endo_2b


E-MTAB-12973:Dox Unt Pre-HPCs_2a

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Unt Pre-HPCs_2a

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: pre-hematopoietic progenitor cell

text: house mouse

characteristic: common name

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Unt Pre-HPCs_2a


E-MTAB-12973:Dox Unt Pre-HPCs_2b

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Unt Pre-HPCs_2b

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: pre-hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Unt Pre-HPCs_2b

characteristic: title


E-MTAB-12973:Dox Unt HP_2a

text: EMBL

text: public

text: E-MTAB-12973:Dox Unt HP_2a

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: hematopoietic progenitor cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

characteristic: genetic modification

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

text: male

characteristic: sex

text: doxycycline (1µg/mL)

text: Dox Unt HP_2a


E-MTAB-12973:Dox Unt HP_2b

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Unt HP_2b

characteristic: Submitter Id

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

characteristic: stimulus

characteristic: stimulus schedule

text: Dox Unt HP_2b


E-MTAB-12973:Dox Dox Endo_2a

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Dox Endo_2a

text: ArrayExpress

characteristic: broker name

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: endothelial cell

text: house mouse

characteristic: common name

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Dox Endo_2a


E-MTAB-12973:Dox Dox Endo_2b

text: EMBL

text: public

text: E-MTAB-12973:Dox Dox Endo_2b

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: endothelial cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

characteristic: genetic modification

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Dox Endo_2b

characteristic: title


E-MTAB-12973:Dox Unt Endo_1a

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Unt Endo_1a

characteristic: Submitter Id

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: endothelial cell

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

text: male

characteristic: sex

text: doxycycline (1µg/mL)

text: Dox Unt Endo_1a


E-MTAB-12973:Dox Dox Pre-HPCs_2a

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Dox Pre-HPCs_2a

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: pre-hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

characteristic: stimulus

characteristic: stimulus schedule

text: Dox Dox Pre-HPCs_2a


E-MTAB-12973:Dox Dox Pre-HPCs_2b

text: EMBL

text: public

text: E-MTAB-12973:Dox Dox Pre-HPCs_2b

text: ArrayExpress

characteristic: broker name

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: pre-hematopoietic progenitor cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

characteristic: genetic modification

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Dox Pre-HPCs_2b


E-MTAB-12973:Dox Dox HP_2a

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Dox HP_2a

characteristic: Submitter Id

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Dox HP_2a

characteristic: title


E-MTAB-12973:Dox Dox HP_2b

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Dox HP_2b

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

text: male

characteristic: sex

text: doxycycline (1µg/mL)

text: Dox Dox HP_2b


E-MTAB-12973:Dox Dox HP_2c

text: EMBL

text: public

text: E-MTAB-12973:Dox Dox HP_2c

text: ArrayExpress

characteristic: broker name

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: hematopoietic progenitor cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

characteristic: genetic modification

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

characteristic: stimulus

characteristic: stimulus schedule

text: Dox Dox HP_2c


E-MTAB-12973:Dox Unt Endo_1b

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Unt Endo_1b

characteristic: Submitter Id

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.17

text: endothelial cell

text: house mouse

text: embryo

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Unt Endo_1b


E-MTAB-12973:Dox Unt Pre-HPCs_1a

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Unt Pre-HPCs_1a

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: pre-hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Unt Pre-HPCs_1a

characteristic: title


E-MTAB-12973:Dox Unt Pre-HPCs_1b

text: EMBL

text: public

text: E-MTAB-12973:Dox Unt Pre-HPCs_1b

text: ArrayExpress

characteristic: broker name

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: pre-hematopoietic progenitor cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

characteristic: genetic modification

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

text: male

characteristic: sex

text: doxycycline (1µg/mL)

text: Dox Unt Pre-HPCs_1b


E-MTAB-12973:Dox Unt HP_1a

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Unt HP_1a

characteristic: Submitter Id

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

characteristic: stimulus

characteristic: stimulus schedule

text: Dox Unt HP_1a


E-MTAB-12973:Dox Unt HP_1b

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Unt HP_1b

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: hematopoietic progenitor cell

text: house mouse

text: embryo

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Unt HP_1b


E-MTAB-12973:Dox Dox Endo_1a

text: EMBL

text: public

text: E-MTAB-12973:Dox Dox Endo_1a

text: ArrayExpress

characteristic: broker name

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: endothelial cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

characteristic: genetic modification

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

text: Dox Dox Endo_1a

characteristic: title


E-MTAB-12973:Dox Dox Endo_1b

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12973:Dox Dox Endo_1b

characteristic: Submitter Id

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: endothelial cell

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

text: male

characteristic: sex

text: doxycycline (1µg/mL)

text: Dox Dox Endo_1b


E-MTAB-12973:Dox Dox Pre-HPCs_1a

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: E-MTAB-12973:Dox Dox Pre-HPCs_1a

text: ArrayExpress

text: i3TFs Tal1Δ/Δ mESCs C3.6

text: pre-hematopoietic progenitor cell

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: embryonic stem cell

text: Mus musculus

text: male

text: doxycycline (1µg/mL)

characteristic: stimulus

characteristic: stimulus schedule

text: Dox Dox Pre-HPCs_1a


text: ICAR National Bureau of Plant Genetic Resources

text: public

text: IBDC

characteristic: broker name

text: sesame

characteristic: common name

text: Around 2500 sesame accessions were genotyped using ddRAD-seq based strategies especially to identify the SNPs and assess molecular diversity and to develop a core using the datasets. Also, the set of SNPs were chosen to prepare a panel of SNPs for chip development.

characteristic: description

text: seedling

text: Sesamum indicum

text: diploid

characteristic: ploidy

text: Sesamum indicum


text: Medirex Group Academy (NPO)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Medirex Group Academy (NPO)

text: human

characteristic: date

text: umbilical cord blood

text: Slovakia

characteristic: location

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Medirex Group Academy (NPO)

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: peripheral blood

text: Slovakia

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CUSB-HM

text: public

text: ena-SAMPLE-TAB-03-05-2023-18:33:02:409-934

text: human biome

characteristic: broad-scale environmental context

characteristic: collection date

text: human

text: stool

text: stool

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Animal distal gut

characteristic: local environmental context

text: Homo sapiens

text: Myasthenia gravis gut fungi

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

characteristic: title


characteristic: External Id

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-03-05-2023-18:33:02:410-935

characteristic: Submitter Id

text: human biome

text: human

characteristic: common name

text: stool

characteristic: description

text: stool

text: Germany

text: stool

text: metagenome

text: Animal distal gut

text: Homo sapiens

characteristic: organism

text: Myasthenia gravis gut fungi

text: Homo sapiens

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CUSB-HM

text: public

text: ena-SAMPLE-TAB-03-05-2023-18:33:02:410-936

text: human biome

characteristic: broad-scale environmental context

characteristic: collection date

text: human

text: stool

text: stool

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: metagenome

text: Animal distal gut

text: Homo sapiens

text: Myasthenia gravis gut fungi

text: Homo sapiens

text: Illumina Miseq


characteristic: External Id

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-03-05-2023-18:33:02:410-937

text: human biome

text: human

text: stool

text: stool

text: Germany

text: stool

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Animal distal gut

characteristic: local environmental context

text: Homo sapiens

text: Myasthenia gravis gut fungi

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

characteristic: title