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characteristic: common name

text: pig

characteristic: description

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: swiss


text: public

tag: Namespace:Interfaculty Bioinformatics Unit, University of Bern

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Mice were bred and maintained in specific-pathogen-free (SPF) facilities at the Institute of Pathology of the University of Bern. All procedures were performed in accordance with ethical guidelines and approved animal license protocols of the Canton of Bern (BE3/18 and BE31/2021). Mice were housed with a 12 h light/dark cycle, regulated temperature and humidity, and provided unlimited access to food and water. C57BL/6J, CD45.1 (B6.SJL-PtprcaPepcb/BoyJ), Mafb-Cre (Mafbtm1.1(cre)Kmm/J), and R26R-EYFP (B6.129X1-Gt(ROSA)26Sortm1(EYFP)Cos/J) mice were purchased from The Jackson Laboratory and bred in-house. IL-1RaLysM mice had been generated (31) by crossing IL-1Rafl/fl (Il1rntm1.1Cga) mice (31) to LysM-Cre (Lyz2tm1(cre)Ifo/J) mice (32) and were kindly provided by Marc Donath (Department of Biomedicine, University Hospital Basel). To obtain IL-1RaMafb and IL-1RaCD11c mice, we crossed IL-1Rafl/fl mice with Mafb- Cre or CD11c-Cre (B6.Cg-Tg(Itgax-cre)1-1Reiz) (34) mice, respectively. CD11c-Cre mice were a gift from Manfred Kopf (Institute of Molecular Health Sciences, ETH Zurich). In general, IL-1Rafl/fl Cre-negative littermates served as controls; for some experiments IL- 1Rawt/wt Cre-positive mice were used as controls and yielded wild type results. R26R- EYFP mice (termed EYFPLSL here) were crossed with LysM-Cre, Mafb-Cre, or CD11c-Cre mice to create the respective EYFP-Cre-reporter strains, which we referred to as EYFPLysM, EYFPMafb, or EYFPCD11c here. All mouse strains were backcrossed onto C57BL/6 for more than 10 generations or had been generated on a C57BL/6 background. Age- and sex-matched animals were randomly assigned to experimental groups. C. albicans (SC5413) was grown in YPD medium (BD DifcoTM YPD Broth, BD Sciences) at 30°C for 18 hours. C. albicans yeast cells were washed twice in sterile PBS and counted using a hemocytometer. To obtain C. albicans hyphae, washed C. albicans yeast were cultured in RPMI 1640 (10% FBS) at 37°C for 4 h. Heat-killed yeast and hyphae were prepared by incubation at 72°C for 1 h, and complete inactivation was confirmed by plating on YPD agar plates at 30°C for 48 h. For in vivo experiments, eight- to ten-week-old mice were infected intravenously with 0.5 - 2.5x105 colony forming units (CFU) C. albicans via the lateral tail vein. Kidneys were disrupted in 0.5 to 1 ml of TRIzol Reagent (Ambion Life Technologies) with stainless steel beads (5 mm; Qiagen) in a TissueLyser II (Qiagen) for 2 cycles of 2 min at 25Hz. Total mRNA was isolated according to manufacturer’s instructions. Contaminating DNA was digested by RNase-free DNase (Life Technologies), mRNA concentrations were measured with a NanoDropTM One spectrophotometer (Thermo Fisher) and 1 μg mRNA/reaction was reverse-transcribed using GoScriptTM Reverse Transcriptase (Promega) in presence of RNase inhibitor (Bioconcept). Quantitative PCR was performed using KAPA SYBR® FAST qPCR Master Mix (2X) Kit (Sigma) on a StepOnePlusTM Real-Time PCR System (Thermo Fisher), and expression was normalized to G6pdx or Actb expression. For FACS-sorted cells, RNA was purified using the ReliaPrepTM RNA Miniprep Systems (Promega) following the manufacturers’ instructions. Kidneys of infected mice were harvested at day 2 post infection, snap-frozen in liquid nitrogen before homogenization in TRI Reagent® (Zymo Research) in BashingBeatTM lysis tubes (Zymo Research) with a TissueLyser II (Qiagen) for 3 cycles of 1 min at 30Hz. Total RNA was extracted using the Direct-zolTM RNA miniprep Plus kit (Zymo Research) and stored at -80°C until use. The quantity and quality of the purified total RNA was assessed using a Qubit 4.0 fluorometer with the Qubit RNA BR Assay Kit (Thermo Fisher) and an Advanced Analytical Fragment Analyzer System using a Fragment Analyzer RNA Kit (Agilent), respectively. Two hundred ng of input RNA was first depleted of ribosomal RNA and globin mRNA using RiboCop for HMR + Globin Depletion Kit (Lexogen) following the manufacturer’s instructions. Thereafter, cDNA libraries were generated using a CORALL Total RNA-Seq V2 library Prep.kit with UDIs 12nt set A1 (Lexogen) according to the protocol for long insert sizes. The quantity and length of the cDNA libraries were investigated using the Qubit 4.0 fluorometer and Advanced Analytical Fragment Analyzer System as above. Library quantification was also determined using a JetSeq library Quantification Lo-ROX kit (Bioline) following the manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: IL-1Ra<fl/fl> = Il1rn(fl/fl); Mafb-Cre (wt/wt)

characteristic: genotype

characteristic: individual

text: Candida albicans SC5314

characteristic: infect

text: Mus musculus

characteristic: organism

text: Mus musculus

text: kidney

characteristic: organism part

text: Mus musculus

characteristic: strain

unit: day

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

text: Interfaculty Bioinformatics Unit, University of Bern

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: Candida albicans SC5314

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: IL-1Ra<Mafb> = Il1rn(fl/fl); Mafb-Cre (tg/wt)

text: Candida albicans SC5314

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus


E-MTAB-12998:Sample 1

text: public

text: E-MTAB-12998:Sample 1

tag: Namespace:University of Glasgow, School of Cancer Sciences

unit: month

text: ArrayExpress

text: house mouse

text: Protocols: Tumours were harvested from the pleura of end-stage mice following humane euthanasia Tumours were initiated by administration of lentiviral vector carrying CRE recombinase to mice aged 8-10 weeks via single intrapleural injection of 10^7 viral particles per mouse. Asbestos (long fibre amosite) was administered via single intrapleural injection of 25ug fibres per mouse 10 days post CRE administration. Mice were maintained until symptoms required humane killing. AZD7507 was dissolved in 0.5% HPMC + 0.1% Tween80 in dH2O and administered at 100mg/kg twice daily by oral gavage. Total RNA was isolated by Trizol according to the manufacturers instructions cDNA was generated using Illumina TruSeq library prep kit

text: adult

characteristic: developmental stage

text: mesothelioma

characteristic: disease

text: Cdkn2a-/-; Nf2 fl/fl; p53 fl/fl

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pleural effusion

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex

text: mixed

characteristic: strain

text: Sample 1


E-MTAB-12998:Sample 2

characteristic: ENA-CHECKLIST

text: University of Glasgow, School of Cancer Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12998:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: mesothelioma

text: Cdkn2a-/-; Nf2 fl/fl; p53 fl/fl

text: Mus musculus

text: Mus musculus

text: pleural effusion

text: neoplasm

text: Mus musculus

text: male

text: mixed

text: Sample 2

characteristic: title


E-MTAB-12998:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12998:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: mesothelioma

text: Cdkn2a-/-; Nf2 fl/fl; p53 fl/fl

text: Mus musculus

text: Mus musculus

text: pleural effusion

text: neoplasm

text: Mus musculus

text: male

text: mixed

text: Sample 3


E-MTAB-12998:Sample 4

text: public

text: E-MTAB-12998:Sample 4

text: ArrayExpress

text: house mouse

text: Protocols: Tumours were harvested from the pleura of end-stage mice following humane euthanasia Tumours were initiated by administration of lentiviral vector carrying CRE recombinase to mice aged 8-10 weeks via single intrapleural injection of 10^7 viral particles per mouse. Asbestos (long fibre amosite) was administered via single intrapleural injection of 25ug fibres per mouse 10 days post CRE administration. Mice were maintained until symptoms required humane killing. Vehicle control (0.5% HPMC + 0.1% Tween80 in dH2O) Total RNA was isolated by Trizol according to the manufacturers instructions cDNA was generated using Illumina TruSeq library prep kit

text: adult

text: mesothelioma

characteristic: disease

text: Cdkn2a-/-; Nf2 fl/fl; p53 fl/fl

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pleural effusion

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: mixed

characteristic: strain

text: Sample 4


E-MTAB-12998:Sample 5

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12998:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: mesothelioma

text: Cdkn2a-/-; Nf2 fl/fl; p53 fl/fl

text: Mus musculus

text: Mus musculus

text: pleural effusion

text: neoplasm

text: Mus musculus

text: male

text: mixed

text: Sample 5

characteristic: title


E-MTAB-12998:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12998:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: mesothelioma

text: Cdkn2a-/-; Nf2 fl/fl; p53 fl/fl

text: Mus musculus

text: Mus musculus

text: pleural effusion

text: neoplasm

text: Mus musculus

text: female

text: mixed

text: Sample 6


text: public

tag: Namespace:Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences  Division of Molecular Medicine and Virology  Linkoping University, Sweden

text: ArrayExpress

text: house mouse

text: Protocols: dLGNs were dissected suspended in 1.5 ml of cold CUT&RUN wash buffer (HEPES pH 7.5 [20 mM], NaCl [150 mM], Spermidine [0.5 mM], Roche Complete Protease Inhibitor EDTA-Free (Cat. # COEDTAFRO, Roche) and then manually dissociated by gentle pipetting. Cells were collected by centrifugation at 600g for 3 minutes and the supernatant carefully removed, and then washed 2 more times by resuspension in 1 ml wash buffer. 4 µl of ConA bead slurry (prepared in binding buffer as described), were added per pair of dLGNs and the cells and beads were incubated for 10 min on a rotator. While the rest of the dissections proceeded, bead bound cells were kept in storage buffer (wash buffer with EDTA [2 mM]). 3 brains (6 dLGNs) were collected per sample. Once all dLGNs were collected, the beads were collected on the magnet and resuspended in 150 µl antibody buffer (wash buffer with EDTA [2 mM] and 0.025 % digitonin). Antibodies were added at 1:100 dilution and incubation proceeded ON at 4 °C. Antibodies used included anti-SOX2 (ABIN2855074, antibodies online), anti-SOX2 (ABIN2855073, antibodies online), and anti-HA (05-902R, Merck). One SOX2 sample was with only ABIN2855074, the other was with both SOX2 antibodies together. The two SOX2 biological replicates were performed independently from different litters of mice. The next day samples were washed twice with dig-wash (wash buffer with 0.025% digitonin) and then resuspended in 150 µl dig-wash containing pA-MNase (New England Biolabs 700 ng/ml, received as a gift from Steven Henikoff) at 1:200 dilution and rotated for 1 hr. Samples were washed twice and then resuspended in 100 µl dig-wash and equilibrated in ice. 2 µl 100 mM CaCl2 was added, and digestion proceeded for 30 min in ice. 100 µl 2X STOP buffer (NaCl [340 mM], EDTA [20 mM], EGTA [4 mM], digitonin [0.05%], RNase A [100 µg/ml], glycogen [50 µl/ml]) was added to stop the digestion reaction and incubated at 37 °C for 30 min. Samples were pelleted at 16000 g for 5 min and placed on the magnet rack. The supernatant was harvested, and beads were discarded. DNA purification was performed with phenol chloroform. Library preparation was performed using the KAPA HyperPrep Kit (Cat. #KK8504, KAPA Biosystems) according to manufacturer’s instructions, using KAPA DUI adapters at 0.15 µM.

text: neonate

text: wildtype genotype

characteristic: genotype

text: 3 pooled individuals

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal lateral geniculate nucleus

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: HA


characteristic: ENA-CHECKLIST

text: Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences Division of Molecular Medicine and Virology Linkoping University, Sweden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: neonate

text: wildtype genotype

text: 3 pooled individuals

text: Mus musculus

text: Mus musculus

text: dorsal lateral geniculate nucleus

text: Mus musculus

text: mixed


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRISA/Inria

text: public

characteristic: Submitter Id

text: Orderly assembly of 50 eBlock in 5 BigBlock and PCR selection

text: synthetic construct

text: synthetic construct

characteristic: title


text: IRISA/Inria

text: public

text: Orderly assembly of 5 BigBlock in 1 BigBlock and PCR selection

characteristic: description

text: synthetic construct

text: synthetic construct


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: strain


characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

text: public

text: feces

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: NL:Maastricht

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: MUMC

text: TRUE

text: feces

text: human gut metagenome

text: male

characteristic: sex

text: Gut microbiota dynamics in relation to Crohn's disease course


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: feces

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: NL:Maastricht

text: Homo sapiens

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: human gut metagenome

text: MUMC

text: TRUE

text: feces

text: human gut metagenome

text: female


text: UCSDMI

text: public

characteristic: Submitter Id

text: feces

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: NL:Maastricht

text: Homo sapiens

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: human gut metagenome

text: MUMC

text: TRUE

text: feces

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: feces

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: NL:Maastricht

text: Homo sapiens

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: human gut metagenome

characteristic: organism

text: MUMC

text: TRUE

text: feces

text: human gut metagenome

text: male


text: UCSDMI

characteristic: INSDC center name

text: public

text: feces

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: NL:Maastricht

text: Homo sapiens

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: epibiont metagenome

text: MUMC

text: TRUE

text: feces

text: epibiont metagenome

text: female


text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: public

tag: Namespace:Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN16751/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16726/2023

characteristic: title


characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16727/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN16729/2023

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16730/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16733/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN16734/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16735/2023

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16736/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN16737/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16738/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN16739/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN16740/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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