characteristic: ENA-CHECKLIST

text: EMBL

text: public

text: E-MTAB-12100:21-032_10_mll2CM_H3K4me3_rep2

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: Protocols: Naive murine embryonic stem cells (mESC) were derived freshly (FVB or mixed 129/B6) and were routinely cultured on gelatin-coated plates in t2i/L media: NDiff (N2B27) (Takara #y40002) supplemented with titrated 2i (0.2__M PD0325901 and 3__M CHIR 99021), 1,000_U/ml leukaemia inhibitory factor (LIF), 1% FBS, 1% penicillin streptomycin and maintained in humidified atmosphere at 37oC and 5% CO2. Cells were passaged every 2_days by dissociation with TrypLE and medium was changed daily. This protocol has been optimised from Skene and Henikoff, Elife, 2017 to detect interaction between DNA and histone modifications. Briefly, fresh cells are harvested, permeabilised, bound to concanavallin magnetic beads and incubated with the antibody for the modification of interest. Samples were then incubated with pA-MNase to cut the DNA side of the bound antibody and the DNA fragments were eluted and subjected to size selection. DNA library was generated with NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB #E7645S).

characteristic: description

text: embryo

characteristic: developmental stage

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB

characteristic: strain


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12100:21-032_11_mll2CM_H3K27me3_rep2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: common name

text: embryo

text: targeted mutation

text: homozygous mll2[Y2602A]

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: FVB

characteristic: title


characteristic: ENA-CHECKLIST

text: EMBL

text: public

text: E-MTAB-12100:21-032_12_mll2CM_H3K27ac_rep2

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: E-MTAB-12100:21-032_13_ctrl_H3K4me3_rep3

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

text: FVB

characteristic: strain


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12100:21-032_14_ctrl_H3K27me3_rep3

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

text: FVB


text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12100:21-032_15_ctrl_H3K27ac_rep3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

text: FVB


text: EMBL

text: public

text: E-MTAB-12100:21-032_16_mll2CM_H3K4me3_rep3

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: common name

text: embryo

text: targeted mutation

text: homozygous mll2[Y2602A]

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: FVB

characteristic: title


characteristic: ENA-CHECKLIST

text: EMBL

text: public

text: E-MTAB-12100:21-032_17_mll2CM_H3K27me3_rep3

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: E-MTAB-12100:21-032_18_mll2CM_H3K27ac_rep3

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: targeted mutation

text: homozygous mll2[Y2602A]

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB

characteristic: strain


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

text: FVB


text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12100:21-032_2_ctrl_H3K27me3_rep1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

text: FVB


text: EMBL

text: public

text: E-MTAB-12100:21-032_4_mll2CM_H3K4me3_rep1

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: common name

text: embryo

text: targeted mutation

text: homozygous mll2[Y2602A]

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: FVB

characteristic: title


characteristic: ENA-CHECKLIST

text: EMBL

text: public

text: E-MTAB-12100:21-032_5_mll2CM_H3K27me3_rep1

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: E-MTAB-12100:21-032_6_mll2CM_H3K27ac_rep1

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: targeted mutation

text: homozygous mll2[Y2602A]

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB

characteristic: strain


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12100:21-032_8_ctrl_H3K27me3_rep2

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

text: FVB


text: Centre de Recherche en Myologie

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centre de Recherche en Myologie

characteristic: Submitter Id

text: human

text: differentiated immortalised myoblasts unaffected individual, treated with all-in-one CRISPRi-lentiviral vector expressing both dCas9/KRAB and non-target guide-number-2,replicate 1 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

characteristic: common name

text: differentiated immortalised myoblasts unaffected individual, treated with all-in-one CRISPRi-lentiviral vector expressing both dCas9/KRAB and non-target guide-number-3,replicate 1 of Track-2

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts unaffected individual, treated with all-in-one CRISPRi-lentiviral vector expressing both dCas9/KRAB and non-target guide-number-4,replicate 2 of Track-1

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts unaffected individual, treated with all-in-one CRISPRi-lentiviral vector expressing both dCas9/KRAB and non-target guide-number-5,replicate 2 of Track-2

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts unaffected individual, treated with all-in-one CRISPRi-lentiviral vector expressing both dCas9/KRAB and non-target guide-number-6,replicate 3 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts unaffected individual, treated with all-in-one CRISPRi-lentiviral vector expressing both dCas9/KRAB and non-target guide-number-7,replicate 4 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts unaffected individual, treated with all-in-one CRISPRi-lentiviral vector expressing both dCas9/KRAB and non-target guide-number-8,replicate 4 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 1 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 1 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 2 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 2 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 3 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 3 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 4 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the guide-number-2,targeting DMPK promoter (sg-DMPK-2),replicate 4 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 1 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 1 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 2 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 2 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 3 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 3 of Track-2

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 4 of Track-1

text: Homo sapiens

text: Homo sapiens


text: Centre de Recherche en Myologie

text: public

text: human

text: differentiated immortalised myoblasts from a dystrophic patient (DM1), treated with all-in-one CRISPRi-lentiviral vector expressing both a dCas9/KRAB protein and the non-target-guide-number-2 (sg-NT-2),replicate 4 of Track-2

text: Homo sapiens

text: Homo sapiens


text: THUENEN INSTITUTE OF BIODIVERSITY

text: public

tag: Namespace:THUENEN INSTITUTE OF BIODIVERSITY

text: cropland

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

text: As part of the Braunschweig FACE experiment, wheat plant rhizosphere samples were collected from plots with elevated atmospheric CO2, higher temperature, and drought, under the influence of different amounts of N fertilizers. Experimental field sites were sampled for two subsequent years (2014, 2015) at the grain maturation stage, and in the second year, also at flowering and mid-of-grain filling.

characteristic: elevation

text: soil

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wheat field

characteristic: local environmental context

text: metagenome

text: Braunschweig FACE soil microbiome

characteristic: project name

text: metagenome

text: MiSeq

characteristic: sequencing method

text: FACE wheat 16S


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE UMR STLO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRAE UMR STLO

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Soy juice was inoculated with Lactobacillus delbrueckii ssp. delbrueckki CIRM-BIA865 at 1% v/v. Incubation was conducted at 37°C and without anoxic conditions to mimic industrial conditions. Samples were collected during fermentation at pH 6.5 (3.3 h p.i.), 6.0 (5.8h p.i.), 5.0 (12.3h p.i) and 4.5 (26.9 p.i.). Cultures were then sampled for population count and RNA extractions. RNA was extracted from 1 mL of sample directly treated with 2 mL of RNA protect cell reagent (Qiagen, Hilden, Germany). This sample was centrifuged 5 min at 4°C, 10,000 g to discard the supernatant. The pellet was frozen at - 80°C with 2 mL of RNA protect. After defrost, the samples were centrifuged again for 5 min at 4°C, 10,000 g to discard the supernatant. Cell pellets were suspended in 200 μL lysis buffer (50 mM Tris-HCl, 1 mM EDTA; pH 8.0) 20 mg/mL lysozyme (MP Biomedicals, Illkirch, France) and 50 U/mL mutanolysin (Sigma, Saint Quentin Fallavier, France) and incubated for 30 min at 24°C. Suspensions were then transferred to 2 mL tubes containing 50 mg zirconium beads (diameter: 0.1 mm; BioSpec Products, Bartlesville) and 50 µL SDS (20 %). Samples were then shaken in a Precellys Evolution (Bertin, Montigny-le-Bretonneux, France) for two cycles of 40 s at 6500 rpm.RNA was then extracted from the cell lysate using the RNeasy Mini kit (Qiagen) and a subsequent DNase treatment (Dnase Rnase free, Ambion) according to the manufacturer's instructions. RNA integrity (RIN) was evaluated using an Agilent 2100 bioanalyzer (Agilent Technologies, Santa Clara, CA). RNA concentrations were quantified using Qubit Fluorometric quantitation (Thermofisher, France). Lack of DNA contamination was also checked using Qbit and DNA quantitation protocol according to manufacturer instructions. RNA samples with a RIN value greater than 6, indicating a good RNA integrity, a quantity higher than 50 µg were kept for further analysis. Total RNA samples are quantified using Qubit 2.0 Fluorometer (Life Technologies, Carlsbad, CA, USA) and RNA integrity is checked with TapeStation (Agilent Technologies, Palo Alto, CA, USA). RNA library preparations, sequencing reactions, and initial bioinformatics analysis is conducted at GENEWIZ, LLC. (South Plainfield, NJ, USA).Whole transcriptome RNA enrichment is performed using NEBNext rRNA Depletion Kit (Bacteria) and NEBNext Ultra II RNA Library Prep Kit for Illumina by following manufacturer’s recommendations (NEB, Ipswich, MA, USA). Briefly, enriched RNAs were fragmented for 15 minutes at 94 °C. First strand and second strand cDNA were subsequently synthesized. cDNA fragments were end repaired and adenylated at 3’ends, and universal adapter was ligated to cDNA fragments, followed by index addition and library enrichment with limited cycle PCR. Sequencing libraries were validated using the Agilent Tapestation 4200 (Agilent Technologies, Palo Alto, CA, USA), and quantified by using Qubit 2.0 Fluorometer (Invitrogen, Carlsbad, CA) as well as by quantitative PCR (Applied Biosystems, Carlsbad, CA, USA).

text: wild type genotype

characteristic: genotype

text: soy juice

characteristic: growth condition

text: Lactobacillus delbrueckii

text: Lactobacillus delbrueckii

text: whole organism

characteristic: organism part

text: Lactobacillus delbrueckii

text: delbrueckii

characteristic: strain


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:CENTRE FOR GENOMIC RESEARCH UNIVERSITY OF LIVERPOOL

text: potato aphid

characteristic: common name

text: Aphid clonal line

characteristic: description

text: Macrosiphum euphorbiae

characteristic: organism

text: Macrosiphum euphorbiae

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CENTRE FOR GENOMIC RESEARCH UNIVERSITY OF LIVERPOOL

text: public

text: potato aphid

text: Aphid clonal line

text: Macrosiphum euphorbiae

text: Macrosiphum euphorbiae


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: potato aphid

text: Aphid clonal line. NOTE, 10x library also contains C. capitata reads as part of a parallel project

text: Macrosiphum euphorbiae

text: Macrosiphum euphorbiae


text: WW0461/22 p-EL

characteristic: Contains RNA extracts (sample codes)

characteristic: Cq (N1)

characteristic: Cq (N2)

characteristic: Date of amplification (ARTIC)

characteristic: Forward file name

text: National Institute of Biology

text: public

characteristic: INSDC status

characteristic: No. replicate

characteristic: Reverse file name

characteristic: SRA accession

text: Department of Endocrinology, Diabetes and Metabolism, University Children's Hospital, University Medical Centre Ljubljana

characteristic: Sequenced where/how

text: INEXTVIR -20

characteristic: Storage location at NIB

tag: Namespace:National Institute of Biology

characteristic: Submitter Id

text: Sequenced wastewater sample from Central WWTP Maribor 1

text: wastewater treatment plant influent

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: wastewater treatment plant influent

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

text: Severe acute respiratory syndrome coronavirus 2

text: Sequencing of Slovenian WW samples for SARS-CoV-2 variant detection

characteristic: project name

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: WW0461/22 p-EL

characteristic: Contains RNA extracts (sample codes)

characteristic: Cq (N1)

characteristic: Cq (N2)

characteristic: Date of amplification (ARTIC)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Forward file name

text: National Institute of Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: INEXTVIR -20

text: Sequenced wastewater sample from Central WWTP Maribor 2

characteristic: description

text: wastewater treatment plant influent

text: wastewater treatment plant

text: wastewater treatment plant influent

text: Slovenia

text: virus

characteristic: organism

text: Illumina

characteristic: title

text: wastewater/sludge


text: WW0465/22 p-EL

text: National Institute of Biology

text: public

characteristic: No. replicate

characteristic: Reverse file name

characteristic: SRA accession

characteristic: Sequenced where/how

text: INEXTVIR -20

characteristic: Storage location at NIB

characteristic: Submitter Id

text: Sequenced wastewater sample from Central WWTP Koper 1

text: wastewater treatment plant influent

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: wastewater treatment plant influent

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

characteristic: project name

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: WW0465/22 p-EL

characteristic: Contains RNA extracts (sample codes)

characteristic: Cq (N1)

characteristic: Cq (N2)

characteristic: Date of amplification (ARTIC)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Forward file name

text: National Institute of Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: INEXTVIR -20

text: Sequenced wastewater sample from Central WWTP Koper 2

characteristic: description

text: wastewater treatment plant influent

text: wastewater treatment plant

text: wastewater treatment plant influent

text: Slovenia

text: virus

characteristic: organism

text: Illumina

characteristic: title

text: wastewater/sludge


text: WW0467/22 p-EL

text: National Institute of Biology

text: public

characteristic: No. replicate

characteristic: Reverse file name

characteristic: SRA accession

characteristic: Sequenced where/how

text: INEXTVIR -20

characteristic: Storage location at NIB

characteristic: Submitter Id

text: Sequenced wastewater sample from Central WWTP Ljubljana 1

text: wastewater treatment plant influent

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: wastewater treatment plant influent

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

characteristic: project name

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: WW0467/22 p-EL

characteristic: Contains RNA extracts (sample codes)

characteristic: Cq (N1)

characteristic: Cq (N2)

characteristic: Date of amplification (ARTIC)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Forward file name

text: National Institute of Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: INEXTVIR -20

text: Sequenced wastewater sample from Central WWTP Ljubljana 2

characteristic: description

text: wastewater treatment plant influent

text: wastewater treatment plant

text: wastewater treatment plant influent

text: Slovenia

text: virus

characteristic: organism

text: Illumina

characteristic: title

text: wastewater/sludge


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

characteristic: SRA accession

tag: Namespace:NATIONAL VETERINARY RESEARCH INSTITUTE

characteristic: Submitter Id

characteristic: collection date

text: Chlamydia gallinacea isolate from chicken cloacal swab

text: Poland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 20-339/2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Poland

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 20-339/3


characteristic: External Id

text: NATIONAL VETERINARY RESEARCH INSTITUTE

characteristic: INSDC center name

text: public

text: Poland

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 20-303/8


text: NATIONAL VETERINARY RESEARCH INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Poland

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 20-303/10


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

characteristic: INSDC status

characteristic: description

text: Poland

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 20-291/9


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Poland

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

characteristic: organism

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 19-530/1

characteristic: title


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Poland

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 19-502/5


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

characteristic: collection date

text: Poland

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 19-502/7


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Poland

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 19-473/7


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Poland

text: not provided

text: Gallus gallus

characteristic: isolate

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 19-473/10


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Poland

text: not provided

text: Gallus gallus

text: cloacal swab

text: Chlamydia gallinacea

text: Chlamydia gallinacea

text: Chlamydia gallinacea strain 15-56/1


characteristic: External Id

characteristic: INSDC center name

text: public

text: potato aphid

characteristic: common name

text: Aphid clonal line

text: Macrosiphum euphorbiae

text: Macrosiphum euphorbiae


MycoCapture

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MycoCapture

tag: Namespace:DST/NRF Centre of Excellence for Biomedical TB research, SAMRC Centre for TB Research

text: Pooled clinical specimen

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb - sputum

text: Sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: MycoCapture


QDXCapture

text: DST/NRF Centre of Excellence for Biomedical TB research, SAMRC Centre for TB Research

text: public

text: QDXCapture

text: Pooled clinical specimen

characteristic: description

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb - sputum

text: Sputum

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: QDXCapture

characteristic: title


text: public

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Evolutionary Anthropology

characteristic: Submitter Id

text: Spain

text: Cantabria, Ramales de la Victoria

characteristic: geographic location (region and locality)

text: Archaeological Sediment layer

text: soil metagenome

text: soil metagenome

text: Layer 17 square H3


text: Max Planck Institute for Evolutionary Anthropology

text: public

text: Spain

characteristic: geographic location (country and/or sea)

text: Cantabria, Ramales de la Victoria

text: Archaeological Sediment layer

text: soil metagenome

text: soil metagenome

text: Layer 504 square Y6 subsquare B


characteristic: ENA-CHECKLIST

text: public

text: Spain

text: Cantabria, Ramales de la Victoria

text: Archaeological Sediment layer

text: soil metagenome

text: soil metagenome

text: Layer 504 square X6 subsquare D


text: public

text: Spain

text: Cantabria, Ramales de la Victoria

text: Archaeological Sediment layer

text: soil metagenome

text: soil metagenome

text: Layer 105 square W7 subsquare C


text: public

text: Spain

text: Cantabria, Ramales de la Victoria

text: Archaeological Sediment layer

text: soil metagenome

text: soil metagenome

text: Layer 505 square X6 subsquare D


text: public

text: Spain

text: Cantabria, Ramales de la Victoria

text: Archaeological Sediment layer

text: soil metagenome

text: soil metagenome

text: Layer 503 square Y5 subsquare B


text: public

text: Germany

text: Thuringia, Jena

text: Negative control tube

text: blank sample

text: blank sample

text: Laboratory extraction negative control


text: public

text: Germany

text: Thuringia, Jena

text: Negative control tube

text: blank sample

text: blank sample

text: DNA library construction control


text: public

text: potato aphid

text: Aphid clonal line ONT data

text: Macrosiphum euphorbiae

text: Macrosiphum euphorbiae


text: public

text: potato aphid

text: Assembly for Potato aphid clonal line MW16_67

text: Macrosiphum euphorbiae

text: Macrosiphum euphorbiae


text: PUBLIC HEALTH ENGLAND

text: public

tag: Namespace:PUBLIC HEALTH ENGLAND

characteristic: collection date

text: Globicatella isolate G1610988

text: United Kingdom

text: England

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Wound (cat bite)

text: Globicatella sp. G1610988

text: Globicatella sp. G1610988


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Istituto Italiano di Tecnologia - I

characteristic: INSDC center name

text: public

tag: Namespace:Istituto Italiano di Tecnologia - I

text: human

text: Native in vitro transcribed miniSINEUP RNA, Replicate 1

text: Homo sapiens

text: Homo sapiens

text: IVT Native Replicate 1


text: Istituto Italiano di Tecnologia - I

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

characteristic: common name

text: Native in vitro transcribed miniSINEUP RNA, Replicate 2

text: Homo sapiens

text: Homo sapiens

text: IVT Native Replicate 2


text: Istituto Italiano di Tecnologia - I

text: public

characteristic: SRA accession

text: human

text: Native in vitro transcribed miniSINEUP RNA, Replicate 3

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: IVT Native Replicate 3

characteristic: title


characteristic: ENA-CHECKLIST

text: Istituto Italiano di Tecnologia - I

text: public

characteristic: Submitter Id

text: human

text: Native in vitro transcribed miniSINEUP RNA, transfected in Ctrl A549, Replicate 1

text: Homo sapiens

text: Homo sapiens

text: IVT Transfect ShCtrl Replicate 1


text: Istituto Italiano di Tecnologia - I

text: public

text: human

text: Native in vitro transcribed miniSINEUP RNA, transfected in Ctrl A549, Replicate 2

text: Homo sapiens

text: Homo sapiens

text: IVT Transfect ShCtrl Replicate 2


text: Istituto Italiano di Tecnologia - I

text: public

text: human

text: Native in vitro transcribed miniSINEUP RNA, transfected in Ctrl A549, Replicate 3

text: Homo sapiens

text: Homo sapiens

text: IVT Transfect ShCtrl Replicate 3


text: Istituto Italiano di Tecnologia - I

text: public

text: human

text: Native in vitro transcribed miniSINEUP RNA, transfected in METTL3 Knock-down A549, Replicate 1

text: Homo sapiens

text: Homo sapiens

text: IVT Transfect ShMETTL3 Replicate 1


text: Istituto Italiano di Tecnologia - I

text: public

text: human

text: Native in vitro transcribed miniSINEUP RNA, transfected in METTL3 Knock-down A549, Replicate 2

text: Homo sapiens

text: Homo sapiens

text: IVT Transfect ShMETTL3 Replicate 2


text: Istituto Italiano di Tecnologia - I

text: public

text: human

text: Native in vitro transcribed miniSINEUP RNA, transfected in METTL3 Knock-down A549, Replicate 3

text: Homo sapiens

text: Homo sapiens

text: IVT Transfect ShMETTL3 Replicate 3


text: Istituto Italiano di Tecnologia - I

text: public

text: human

text: Native in vitro transcribed miniSINEUP RNA, transfected in METTL3 Knock-down A549, Replicate 4

text: Homo sapiens

text: Homo sapiens

text: IVT Transfect ShMETTL3 Replicate 4


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: University of Helsinki

text: public

tag: Namespace:University of Helsinki

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I106 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: week

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: male

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I111 collected at 3 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

text: public

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I106 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: male

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I111 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I168 collected at 3 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

unit: weeks

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I131 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I116 collected at 3 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I157 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

text: Stool sample Infant #I168 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I137 collected at 3 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

text: Stool sample Infant #I199 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I131 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I232 collected at 3 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I116 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

text: Stool sample Infant #I174 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I157 collected at 6 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

text: Stool sample Infant #I137 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I139 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I106 collected at 3 months of age

characteristic: description

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I158 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: male

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

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