characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut shotgun metagenomics

characteristic: description

text: human

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: India

text: human-associated environmental package

text: caesarean

text: female

text: metagenome

text: human gut metagenome

characteristic: organism

text: RoVI

text: infant stool

text: human gut metagenome

text: Illumina HiSeq

text: CGR

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

tag: Namespace:UNIVERSITY OF LIVERPOOL

text: human gut shotgun metagenomics

text: human

text: gut

text: faeces

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-associated environmental package

characteristic: human-associated environmental package

characteristic: infant age (weeks)

text: vaginal

characteristic: infant delivery mode

text: female

characteristic: infant sex

text: metagenome

characteristic: investigation type

characteristic: nanodrop concentration (ng/ul)

text: human gut metagenome

text: RoVI

characteristic: project name

text: infant stool

characteristic: sample group

characteristic: sample type

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: sequencing run

text: CGR

characteristic: sequencing site


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut shotgun metagenomics

characteristic: description

text: human

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: India

text: human-associated environmental package

text: caesarean

text: male

text: metagenome

text: human gut metagenome

characteristic: organism

text: RoVI

text: infant stool

text: human gut metagenome

text: Illumina HiSeq

text: CGR

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

text: human gut shotgun metagenomics

text: human

text: gut

text: faeces

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-associated environmental package

characteristic: human-associated environmental package

characteristic: infant age (weeks)

text: vaginal

characteristic: infant delivery mode

text: male

characteristic: infant sex

text: metagenome

characteristic: investigation type

characteristic: nanodrop concentration (ng/ul)

text: human gut metagenome

text: RoVI

characteristic: project name

text: infant stool

characteristic: sample group

characteristic: sample type

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: sequencing run

text: CGR

characteristic: sequencing site


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut shotgun metagenomics

characteristic: description

text: human

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: Malawi

text: human-associated environmental package

text: vaginal

text: male

text: metagenome

text: human gut metagenome

characteristic: organism

text: RoVI

text: infant stool

text: human gut metagenome

text: Illumina HiSeq

text: CGR

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

text: human gut shotgun metagenomics

text: human

text: gut

text: faeces

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-associated environmental package

characteristic: human-associated environmental package

characteristic: infant age (weeks)

text: vaginal

characteristic: infant delivery mode

text: female

characteristic: infant sex

text: metagenome

characteristic: investigation type

characteristic: nanodrop concentration (ng/ul)

text: human gut metagenome

text: RoVI

characteristic: project name

text: infant stool

characteristic: sample group

characteristic: sample type

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: sequencing run

text: CGR

characteristic: sequencing site


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut shotgun metagenomics

characteristic: description

text: human

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: Malawi

text: human-associated environmental package

text: vaginal

text: female

text: metagenome

text: human gut metagenome

characteristic: organism

text: RoVI

text: infant stool

text: human gut metagenome

text: Illumina HiSeq

text: CGR

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

text: human gut shotgun metagenomics

text: human

text: gut

text: faeces

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-associated environmental package

characteristic: human-associated environmental package

characteristic: infant age (weeks)

text: vaginal

characteristic: infant delivery mode

text: male

characteristic: infant sex

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: RoVI

characteristic: project name

text: infant stool

characteristic: sample group

characteristic: sample type

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: sequencing run

text: CGR

characteristic: sequencing site


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Institute of Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:The Institute of Cancer Research

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: common name

text: Protocols: Inducible Cas9 MCF10A TP53-/- cells were generated for the CRISPRn screen by lentiviral transduction of MCF10A TP53-/- cells with hEF1a-Cas9 (Cat# CAS11229, Dharmacon). Following antibiotic selection with 10 ug/mL blasticidin, 300 million Cas9-expressing cells were infected with a genome wide human lentiviral CRISPR library (RRID:Addgene_67989). The cells were infected with a multiplicity of infection (MOI) 0.3 (to ensure <1 sgRNA per cell), resulting in each sgRNA infecting at least 1,000 cells, a representation that was maintained throughout the experiment. The library contains 90,709 sgRNAs targeting 18,010 genes. Following 2 ug/mL puromycin selection for 72 hours, 1 µg/mL doxycycline was added for 72 hours to induce Cas9 expression. The cell line used for CRISPRi screen was generated by lentiviral transduction of MCF10A TP53-/- cells with lenti-BLAST-dCas9-KRAB (RRID: Addgene_89567) followed by selection with 10 µg/mL blasticidin. 300 million dCas9-KRAB expressing cells were infected at MOI 0.3 with a genome-wide human lentiviral CRISPRi library (RRID: Addgene_84832). The library contains 104,535 sgRNAs targeting 18,905 protein coding genes. In both CRISPRn and CRISPRi screens, cells were collected for an early time point sample of initial library representation (T0) following selection. 100 million CRISPR mutagenized cells were exposed to concentrations that caused a 20% reduction in cell survival (Surviving Fraction 80, SF80) of either 2.5 µM olaparib or 25 nM talazoparib. 25 million cells were seeded into 4X 5 layer flasks and the indicated drug, or DMSO, was added after 24 hours. In total, cells were exposed to drug or DMSO for 14 days (10 population doublings), after which the cells were recovered DNA was extracted from T0 and T1 cell samples using the DNeasy blood and tissue kit (Qiagen), according to the manufacturer’s protocol. sgRNA sequences were PCR amplified for sequencing on Illumina sequencing (HiSeq 2500), producing >1,000 short-reads per sgRNA within the library.

characteristic: description

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: The Institute of Cancer Research

text: public

text: ArrayExpress

text: epithelial cell

text: human

text: TP53-/-, RB1-/-

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens


E-MTAB-12939:MCF10A FBXW7-/- cl17 T0

characteristic: ENA-FIRST-PUBLIC

text: The institute of Cancer Research

text: public

text: E-MTAB-12939:MCF10A FBXW7-/- cl17 T0

tag: Namespace:The institute of Cancer Research

text: ArrayExpress

text: epithelial cell

text: human

text: Protocols: Inducible SpCas9 expressing cells were seeded for 1000x representation per sgRNA, and infected at a multiplicity of infection (MOI) of 0.3, to avoid multiple sgRNA infections per cell, using the previously published and validated genome-wide human lentiviral library (Kosuke Yusa Human GW CRISPR guide RNA library V1). After puromycin selection (1 µg/mL), cells were exposed to doxycycline for 3 days and harvested at day 0 (T0) and on day 14 (T1). Genomic DNA was extracted from the T=0 and T=1 samples using DNeasy Blood and Tissue Kit (Qiagen) as per manufacturers instructions. sgRNA sequence were amplified with Q5 polymerase (NEB) with the following primers Forward 5’- ACACTCTTTCCCTACACGACGCTCTTCCGATCTCTTGTGGAAAGGACGAAACA and Reverse 5’- TCGGCATTCCTGCTGAACCGCTCTTCCGATCTCTAAAGCGCATGCTCCAGAC.

text: TP53-/-, FBXW7-/- clone17

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: MCF10A FBXW7-/- cl17 T0


E-MTAB-12939:MCF10A FBXW7-/- cl17 T1

characteristic: ENA-LAST-UPDATE

text: The institute of Cancer Research

text: public

text: E-MTAB-12939:MCF10A FBXW7-/- cl17 T1

text: ArrayExpress

text: epithelial cell

text: human

text: TP53-/-, FBXW7-/- clone17

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: MCF10A FBXW7-/- cl17 T1


E-MTAB-12939:MCF10A FBXW7-/- cl24 T0

characteristic: External Id

text: The institute of Cancer Research

text: public

text: E-MTAB-12939:MCF10A FBXW7-/- cl24 T0

text: ArrayExpress

text: epithelial cell

text: human

text: TP53-/-, FBXW7-/- clone24

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: MCF10A FBXW7-/- cl24 T0


E-MTAB-12939:MCF10A FBXW7-/- cl24 T1

text: The institute of Cancer Research

characteristic: INSDC center name

text: public

text: E-MTAB-12939:MCF10A FBXW7-/- cl24 T1

text: ArrayExpress

text: epithelial cell

text: human

text: TP53-/-, FBXW7-/- clone24

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: MCF10A FBXW7-/- cl24 T1


E-MTAB-12939:MCF10A PT T0

text: The institute of Cancer Research

characteristic: INSDC first public

text: public

text: E-MTAB-12939:MCF10A PT T0

text: ArrayExpress

text: epithelial cell

text: human

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: MCF10A PT T0


E-MTAB-12939:MCF10A PT T1

text: The institute of Cancer Research

characteristic: INSDC last update

text: public

text: E-MTAB-12939:MCF10A PT T1

text: ArrayExpress

text: epithelial cell

text: human

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: MCF10A PT T1


text: NCIPD

text: public

characteristic: INSDC status

text: National Centre of oncology

characteristic: collection date

text: Draft genome sequence of the first plasmid-mediated mcr-1-positive ST2067 Escherichia coli human isolate co-producing IRT-30 beta-lactamase in Bulgaria

text: Bulgaria

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: Stefana Sabtcheva

characteristic: isolate

text: human urine

text: 43.225887 N 27.936721 E

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain


text: MMM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

text: missing: sample group

text: mixed sample

characteristic: organism

text: mixed sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

text: homo sapien

text: not collected

characteristic: host sex

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


E-MTAB-12936:IMR90 shCD44-1 rep 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12936:IMR90 shCD44-1 rep 1

tag: Namespace:Osaka Metropolitan University Graduate School of Medicine

text: ArrayExpress

characteristic: broker name

text: lung fibroblast

text: human

characteristic: common name

text: Protocols: Cells were lysed in RNAisoPlus reagent. The RNA samples were extracted using RNAisoPlus reagent. RNA samples were sent to the Psomagen, Inc. The TruSeq Stranded mRNA Kit (Illumina) was used for library construction.

characteristic: description

text: fetus

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: IMR90 shCD44-1 rep 1


E-MTAB-12936:IMR90 shCD44-1 rep 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Osaka Metropolitan University Graduate School of Medicine

text: public

characteristic: SRA accession

text: E-MTAB-12936:IMR90 shCD44-1 rep 2

characteristic: Submitter Id

text: ArrayExpress

text: lung fibroblast

text: human

text: fetus

text: normal

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: IMR90 shCD44-1 rep 2


E-MTAB-12936:IMR90 shCD44-1 rep 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12936:IMR90 shCD44-1 rep 3

text: ArrayExpress

text: lung fibroblast

text: human

text: fetus

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: IMR90 shCD44-1 rep 3

characteristic: title


E-MTAB-12936:IMR90 shCD44-2 rep 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12936:IMR90 shCD44-2 rep 1

text: ArrayExpress

text: lung fibroblast

text: human

text: fetus

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: IMR90 shCD44-2 rep 1


E-MTAB-12936:IMR90 shCD44-2 rep 2

text: public

characteristic: INSDC status

text: E-MTAB-12936:IMR90 shCD44-2 rep 2

text: ArrayExpress

characteristic: broker name

text: lung fibroblast

text: human

characteristic: common name

text: fetus

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: IMR90 shCD44-2 rep 2


E-MTAB-12936:IMR90 shCD44-3 rep 3

text: public

text: E-MTAB-12936:IMR90 shCD44-3 rep 3

text: ArrayExpress

text: lung fibroblast

text: human

characteristic: description

text: fetus

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: IMR90 shCD44-3 rep 3


E-MTAB-12936:IMR90 shLuc rep 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12936:IMR90 shLuc rep 1

text: ArrayExpress

text: lung fibroblast

text: human

text: fetus

text: normal

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: IMR90 shLuc rep 1


E-MTAB-12936:IMR90 shLuc rep 2

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-12936:IMR90 shLuc rep 2

characteristic: Submitter Id

text: ArrayExpress

text: lung fibroblast

text: human

text: fetus

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: IMR90 shLuc rep 2


E-MTAB-12936:IMR90 shLuc rep 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12936:IMR90 shLuc rep 3

text: ArrayExpress

text: lung fibroblast

text: human

text: fetus

text: normal

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: IMR90 shLuc rep 3


name: M. smegmatis MC2 155 ATCC 700084 total RNA extract with/without MenT1

text: CNRS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5 µg total RNA of M. smegmatis with 1 mM CTP were incubated with water or 10 µg MenT1 WT for 1 h at 37 °C, To remove m1A, m3C and m1G modification in the tRNAs, the total RNA samples were pretreated using the demethylase kit (Arraystar, cat#: AS-FS-004, Rockville, MD, USA), followed by trizol isolation.

text: culture

characteristic: isolate

text: Mycolicibacterium smegmatis MC2 155

text: Mycolicibacterium smegmatis MC2 155

text: M. smegmatis total RNA extract with or without MenT1

characteristic: title


M. tuberculosis H37Rv Gly (TCC) glyV

text: CNRS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M. tuberculosis H37Rv Gly (TCC) glyV

text: 15 ng of specific tRNA (in vitro transcribed) of M. tuberculosis were incubated with 5 µM MenT1 WT or MenT1 D41A (1.3 µg) at 37 °C for 1 h.

text: in vitro

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: M. tuberculosis Gly-3 TCC tRNA with or wihtout MenT1 or MenT1D41A


name: M. smegmatis MC2 155 ATCC 700084 total RNA extract with/without MenT4

text: CNRS

text: public

text: 5 µg total RNA of M. smegmatis with 1 mM GTP were incubated with water or 10 µg MenT4 WT for 2 h at 37 °C. To remove m1A, m3C and m1G modification in the tRNAs, the total RNA samples were pretreated using the demethylase kit (Arraystar, cat#: AS-FS-004, Rockville, MD, USA), followed by trizol isolation.

characteristic: description

text: culture

text: Mycolicibacterium smegmatis MC2 155

text: Mycolicibacterium smegmatis MC2 155

text: M. smegmatis total RNA extract with or without MenT4


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Hadar


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Mpumalanga

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: DGO

text: public

characteristic: SRA accession

text: baker's yeast

characteristic: common name

text: Isolate derived Genomic DNA

text: Ireland

characteristic: geographic location (country and/or sea)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae 1947


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DGO

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae 1950


text: DGO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae1955

characteristic: title


text: DGO

text: public

characteristic: INSDC status

text: baker's yeast

text: Isolate derived Genomic DNA

characteristic: description

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae 1959


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae 1960


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae 1981


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae 59BY


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae FES1


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae FES2


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae FES3


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae IDS1


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae IDS2


Ikeja

text: DGO

text: public

text: Ikeja

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae Ikeja


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae PR1960


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae PR1979


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae PR1986


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae Smithwicks_1986


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae Macardles_1965


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae Macardles_1983


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae Perry_1966


text: DGO

text: public

text: baker's yeast

text: Isolate derived Genomic DNA

text: Ireland

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae Cherry_1959


text: University clinic Duesseldorf

text: public

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DGO

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Isolate derived Genomic DNA

text: Ireland

characteristic: geographic location (country and/or sea)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae GNB_1958


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa, Gauteng

characteristic: geographic location

text: Human, CSF

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enterica subspecies diarizonae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Pretoria

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Rectal swab

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium monophasic


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

text: South Africa, Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enterica subspecies diarizonae

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Hadar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Newport


characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium monophasic


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Eastern Cape

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: ETH ZURICH

text: public

tag: Namespace:ETH ZURICH

text: Multiple fragments (157 scaffolds) with little to no review of assembly other than reporting of standard assembly (N50 of 39.9kbp).

characteristic: assembly quality

characteristic: assembly software

text: --minContig 2000 and --maxEdges 500

characteristic: binning parameters

characteristic: binning software

text: Average of checkm and anvi'o (marker-gene based)

characteristic: completeness approach

characteristic: completeness score

text: checkm and anvi'o

characteristic: completeness software

characteristic: contamination score

characteristic: contamination screening input

text: draft genome assembly from metagenomic biosample SAMN07136937

text: ocean biome [ENVO:01000048]

characteristic: environment (biome)

text: microbial feature [ENVO:01000007]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ocean water

text: marine metagenome

characteristic: metagenomic source

text: uncultured Planktomarina sp.

characteristic: organism

text: Ecogenomics and diversification of the Roseobacter RCA cluster and global biogeography of sublineages

characteristic: project name

text: No

characteristic: reassembly post binning

characteristic: reference for biomaterial

text: Description of the bioinformatics pipeline in https://doi.org/10.1038/s41586-022-04862-3

characteristic: relevant standard operating procedures

characteristic: sample derived from

text: uncultured Planktomarina sp.

text: Illumina NextSeq 550

characteristic: sequencing method

text: 0.2-Inf micrometers

characteristic: size fraction selected

text: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina;s__Planktomarina sp002698165

characteristic: taxonomic classification

text: multi-gene approach (GTDBTk:v1.0.2)

characteristic: taxonomic identity marker

text: Pseudoplanktomarina atlantica metagenome-assembled genome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments (71 scaffolds) with little to no review of assembly other than reporting of standard assembly (N50 of 57.8kbp).

characteristic: assembly quality

characteristic: assembly software

text: --minContig 2000 and --maxEdges 500

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness approach

characteristic: completeness score

text: checkm and anvi'o

characteristic: completeness software

characteristic: contamination score

characteristic: contamination screening input

text: draft genome assembly from metagenomic biosample SAMEA4397239

characteristic: description

text: ocean biome [ENVO:01000048]

characteristic: environment (biome)

text: microbial feature [ENVO:01000007]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

text: metagenome

text: ocean water

text: marine metagenome

text: uncultured Planktomarina sp.

text: No

text: uncultured Planktomarina sp.

text: Illumina HiSeq 2500

text: 0.22-3 micrometers

text: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina;s__

text: multi-gene approach (GTDBTk:v1.0.2)

text: Pseudoplanktomarina karensis metagenome-assembled genome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Multiple fragments (136 scaffolds) with little to no review of assembly other than reporting of standard assembly (N50 of 37.4kbp).

text: --minContig 2000 and --maxEdges 500

text: checkm and anvi'o

text: draft genome assembly from metagenomic biosample SAMEA4397426

text: ocean biome [ENVO:01000048]

text: microbial feature [ENVO:01000007]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ocean water

text: marine metagenome

characteristic: metagenomic source

text: uncultured Planktomarina sp.

characteristic: organism

characteristic: project name

text: No

characteristic: reassembly post binning

characteristic: reference for biomaterial

characteristic: relevant standard operating procedures

characteristic: sample derived from

text: uncultured Planktomarina sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: 0.22-3 micrometers

characteristic: size fraction selected

characteristic: taxonomic classification

text: multi-gene approach (GTDBTk:v1.0.2)

characteristic: taxonomic identity marker

text: Planktomarina arctica metagenome-assembled genome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments (83 scaffolds) with little to no review of assembly other than reporting of standard assembly (N50 of 114.3kbp).

characteristic: assembly quality

characteristic: assembly software

text: defaults

characteristic: binning parameters

text: CONCOCT and anvi'o

characteristic: binning software

characteristic: collection date

characteristic: completeness approach

characteristic: completeness score

text: checkm and anvi'o

characteristic: completeness software

characteristic: contamination score

characteristic: contamination screening input

text: draft genome assembly from metagenomic biosample SAMN08778202

characteristic: description

text: ocean biome [ENVO:01000048]

characteristic: environment (biome)

text: microbial feature [ENVO:01000007]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: North Sea

text: metagenome

text: ocean water

text: marine metagenome

text: uncultured Planktomarina sp.

text: Manual curation and reassmbly by read-mapping as described in PRJEB28156

text: uncultured Planktomarina sp.

text: Illumina HiSeq 2500

text: 0.22-3 micrometers

text: multi-gene approach (GTDBTk:v1.0.2)

text: Planktomarina forsetii metagenome-assembled genome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute for Chemistry and Biology of the Marine Environment

text: Whole genome shotgun sequencing

text: Germany

characteristic: geographic location (country and/or sea)

text: 53.75976583, 7.71516

text: salt marsh metagenome

characteristic: organism

text: salt marsh metagenome


text: Institute for Chemistry and Biology of the Marine Environment

text: public

characteristic: Submitter Id

characteristic: collection date

text: Whole genome shotgun sequencing

text: Germany

text: 53.75677067, 7.71577

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

characteristic: description

text: Germany

text: 53.7550308, 7.71611

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.761983, 7.72272

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.76199642, 7.722497851

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.762026, 7.72229

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.762199, 7.7228

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.76216156, 7.722523634

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.762271, 7.72236

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.7626241, 7.722896975

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.76264435, 7.722700432

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: Germany

text: 53.76266697, 7.722446775

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: Whole genome shotgun sequencing

text: United Kingdom

text: 52.9653224, 0.9259807

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: United Kingdom

text: 52.96535, 0.9260182

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: United Kingdom

text: 52.9653224, 0.9259807

text: salt marsh metagenome

text: salt marsh metagenome

text: UK-nat-Mud pool-R1


text: public

text: 16S rRNA amplicon sequnicing

text: United Kingdom

text: 52.9653224, 0.9259807

text: salt marsh metagenome

text: salt marsh metagenome

text: UK-nat-Mud pool-R2


text: public

text: 16S rRNA amplicon sequnicing

text: United Kingdom

text: 52.9653224, 0.9259807

text: salt marsh metagenome

text: salt marsh metagenome

text: UK-nat-Mud pool-R3


text: public

text: 16S rRNA amplicon sequnicing

text: United Kingdom

text: 52.9653731, 0.9261547

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: United Kingdom

text: 52.9653224, 0.9259807

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.7626241, 7.722896975

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.76264435, 7.722700432

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.76266697, 7.722446775

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.762271, 7.72236

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.76216156, 7.722523634

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.762199, 7.7228

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.762026, 7.72229

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.76199642, 7.722497851

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.761983, 7.72272

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.7619302, 7.71609

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.75976583, 7.71516

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.75677067, 7.71577

text: salt marsh metagenome

text: salt marsh metagenome


text: public

text: 16S rRNA amplicon sequnicing

text: Germany

text: 53.7550308, 7.71611

text: salt marsh metagenome

text: salt marsh metagenome


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-SIRL00017860/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-SIRL00017893/2023

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-SIRL00018371/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-SIRL00019365/2023

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-SIRL00019477/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Galway

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/G-NVRL-SIRL00019346/2023

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-SIRL00018982/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-SIRL00019478/2023

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-SIRL00019479/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kilkenny

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KK-NVRL-SIRL00018228/2023

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kilkenny

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/KK-NVRL-SIRL00019213/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wicklow

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/WW-NVRL-SIRL00018231/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wicklow

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WW-NVRL-SIRL00018678/2023

characteristic: title


text: public

tag: Namespace:Flinders Accelerator for Microbiome Exploration

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9503

text: Stool

characteristic: environmental medium

text: USA

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9503

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

text: Hecatomb: An End-to-End Research Platform for Viral Metagenomics

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1018C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Flinders Accelerator for Microbiome Exploration

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9504

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9504

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1024C1


text: public

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9505

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9505

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1038C1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9506

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9506

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1052C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9507

characteristic: description

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9507

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1070C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9508

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9508

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1092C1

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9509

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9509

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1092C2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9510

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9510

text: Gastrointestinal

text: Macaca mulatta

text: Caudoviricetes sp.

text: Caudoviricetes sp.

text: Illumina MiSeq

text: uncultured Caudoviricetes phage 1112C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9511

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9511

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1113C1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Flinders Accelerator for Microbiome Exploration

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9512

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9512

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

text: Hecatomb: An End-to-End Research Platform for Viral Metagenomics

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1138C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9513

characteristic: description

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9513

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1145C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9514

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9514

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1197C1

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9515

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9515

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1197C2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9516

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9516

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1198C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9517

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9517

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1220C1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9518

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9518

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1221C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9519

characteristic: description

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9519

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1229C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Flinders Accelerator for Microbiome Exploration

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9520

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9520

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1235C1

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9521

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9521

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Caudoviricetes sp.

text: Hecatomb: An End-to-End Research Platform for Viral Metagenomics

characteristic: project name

characteristic: sample derived from

text: Caudoviricetes sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Caudoviricetes phage 123C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9522

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9522

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1244C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9523

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9523

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1245C1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9524

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9524

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1245C2


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9525

characteristic: description

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9525

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1252C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9526

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9526

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1254C1

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9527

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9527

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1255C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Flinders Accelerator for Microbiome Exploration

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9528

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9528

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1261C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9529

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9529

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1269C1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9530

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9530

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Gokushovirinae sp.

text: Hecatomb: An End-to-End Research Platform for Viral Metagenomics

characteristic: project name

characteristic: sample derived from

text: Gokushovirinae sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Gokushovirinae phage 1274C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9531

characteristic: description

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9531

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1295C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9532

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9532

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1296C1

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9533

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9533

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1297C1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9534

text: Stool

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9534

text: Gastrointestinal

text: Macaca mulatta

text: Microvirus sp.

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1298C1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hecatomb; 1.2.0

characteristic: assembly software

text: Coverage, circular, marker genes

characteristic: binning parameters

text: Phables; 0.2.0

characteristic: binning software

text: Host associated

characteristic: broad-scale environmental context

characteristic: collection date

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9535

characteristic: description

text: Stool

text: USA

text: not provided

text: not provided

text: virus

characteristic: investigation type

text: rhesus macaque stool viral metagenome from BioProject PRJEB9535

text: Gastrointestinal

characteristic: local environmental context

text: Macaca mulatta

text: Microvirus sp.

characteristic: organism

text: Microvirus sp.

text: Illumina MiSeq

text: uncultured Microviridae phage 1299C1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Flinders Accelerator for Microbiome Exploration

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hecatomb; 1.2.0

text: Coverage, circular, marker genes

text: Phables; 0.2.0

text: Host associated

text: Resolved phage genome from metagenome assembly graph using all samples from BioProject PRJEB9536

text: Stool

text: USA

text: not provided

text: not provided

text: virus

text: rhesus macaque stool viral metagenome from BioProject PRJEB9536

text: Gastrointestinal

text: Macaca mulatta

characteristic: metagenomic source

text: Microvirus sp.

characteristic: project name

characteristic: sample derived from

text: Microvirus sp.

text: Illumina MiSeq

characteristic: sequencing method

text: uncultured Microviridae phage 1300C1