COG-UK/PHWC-PKTDEG

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKTDEG

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTDEG

characteristic: title

text: not provided


status: PUBLIC

tag: attribute

text: public

characteristic: SRA accession

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


COG-UK/PHWC-PKOWXJ

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOWXJ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOWXJ

text: not provided


COG-UK/PHWC-PKORIC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKORIC

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKORIC

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOSAW

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOSAW

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOSAW

characteristic: title

text: not provided


COG-UK/PHWC-PKOSWH

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOSWH

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOSWH

text: not provided


COG-UK/PHWC-PKOOWN

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOOWN

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOOWN

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOXCW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOXCW

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOXCW

characteristic: title

text: not provided


COG-UK/PHWC-PKOQAH

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOQAH

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOQAH

text: not provided


COG-UK/PHWC-PKOMSD

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOMSD

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOMSD

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTBKR

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKTBKR

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTBKR

characteristic: title

text: not provided


COG-UK/PHWC-PKORDT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKORDT

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKORDT

text: not provided


COG-UK/PHWC-PKXAOF

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKXAOF

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKXAOF

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKONKF

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKONKF

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKONKF

characteristic: title

text: not provided


COG-UK/PHWC-PKXZTR

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKXZTR

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKXZTR

text: not provided


COG-UK/PHWC-PKOMYO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOMYO

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOMYO

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOGXZ

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOGXZ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOGXZ

characteristic: title

text: not provided


COG-UK/PHWC-PKXSEA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKXSEA

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKXSEA

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKXHAT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKXHAT

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKXHAT

characteristic: title

text: not provided


COG-UK/PHWC-PKOXGY

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOXGY

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOXGY

text: not provided


COG-UK/PHWC-PKOORD

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOORD

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOORD

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOXWD

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOXWD

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOXWD

characteristic: title

text: not provided


COG-UK/PHWC-PKXAES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKXAES

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKXAES

text: not provided


COG-UK/PHWC-PKTRGJ

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKTRGJ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKTRGJ

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOEQZ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOEQZ

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOEQZ

characteristic: title

text: not provided


COG-UK/PHWC-PKOMBQ

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOMBQ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOMBQ

text: not provided


COG-UK/PHWC-PKTYFX

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKTYFX

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKTYFX

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKXIPX

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKXIPX

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKXIPX

characteristic: title

text: not provided


COG-UK/PHWC-PKOYUW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOYUW

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOYUW

text: not provided


text: UNIVERSITY OF MELBOURNE

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF MELBOURNE

characteristic: Submitter Id

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: human gastric microbiota


characteristic: ENA-CHECKLIST

text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Alderley Park

text: not provided

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: SC

text: Integrated Covid Hub North East

text: not provided

text: Samples prepared at Integrated Covid Hub North East by Integrated Covid Hub North East and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Health Services Laboratories

text: not provided

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:993-15991

tag: Namespace:Institute for Tropical Medicine, University Hospital Tuebingen, Tuebingen

characteristic: collection date

text: Gabon

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: Institute for Tropical Medicine, University Hospital Tuebingen, Tuebingen

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15992

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

characteristic: isolate

text: Stool

text: human feces metagenome

characteristic: organism

text: human feces metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15993

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15994

characteristic: Submitter Id

text: Gabon

text: diseased

characteristic: host health state

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15995

text: Gabon

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15996

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15997

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15998

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-15999

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16000

characteristic: collection date

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16001

text: Gabon

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16002

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16003

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

characteristic: isolate

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16004

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

characteristic: organism

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16005

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16006

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16007

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: Institute for Tropical Medicine, University Hospital Tuebingen, Tuebingen

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16008

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:994-16009

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16010

characteristic: Submitter Id

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16011

text: Gabon

text: diseased

characteristic: host health state

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16012

text: Gabon

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16013

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16014

text: Gabon

text: diseased

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16015

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16016

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16017

characteristic: collection date

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16018

text: Gabon

characteristic: geographic location (country and/or sea)

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16019

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16020

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

characteristic: isolate

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16021

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

characteristic: organism

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16022

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16023

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: Institute for Tropical Medicine, University Hospital Tuebingen, Tuebingen

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16024

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16025

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16026

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:995-16027

characteristic: Submitter Id

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16028

text: Gabon

text: healthy

characteristic: host health state

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16029

text: Gabon

text: healthy

text: Homo sapiens

characteristic: host scientific name

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16030

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16031

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16032

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16033

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16034

characteristic: collection date

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16035

text: Gabon

characteristic: geographic location (country and/or sea)

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16036

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16037

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

characteristic: isolate

text: Stool

text: human feces metagenome

text: human feces metagenome


text: public

text: ena-SAMPLE-TAB-24-07-2023-09:11:37:996-16038

text: Gabon

text: healthy

text: Homo sapiens

text: DNA

text: Stool

text: human feces metagenome

characteristic: organism

text: human feces metagenome


text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

text: not provided

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Alderley Park

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Integrated Covid Hub North East

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Integrated Covid Hub North East by Integrated Covid Hub North East and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

text: Science Park of Comenius University of Bratislava

text: not provided

characteristic: common name

text: Slovakia

unit: years

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: unknown

characteristic: host subject id

text: unknown

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Slovakia

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: unknown

text: unknown

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: female

text: unknown

text: unknown

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: Slovakia

unit: months

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: unknown

characteristic: host subject id

text: unknown

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16122

tag: Namespace:Institute of Life Sciences, Bhubaneshwar, India

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: house mouse

text: Poly-A RNA pull down from AMT crosslinked total RNA

characteristic: description

text: India

text: Mus musculus

text: Mus musculus

text: CLiPP-Seq

characteristic: title


text: Institute of Life Sciences, Bhubaneshwar, India

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16123

text: not collected

text: house mouse

characteristic: common name

text: India

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: organism

text: Mus musculus

text: CLiPP-Seq


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16124

text: not collected

text: house mouse

text: Poly-A RNA pull down from AMT crosslinked total RNA followed by RNase R treatment

text: India

text: Mus musculus

text: Mus musculus

text: CLiPPR-Seq


text: public

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16125

text: not collected

text: house mouse

text: India

text: Mus musculus

text: Mus musculus

text: CLiPPR-Seq


text: public

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16126

text: not collected

text: human

text: India

text: Homo sapiens

text: Homo sapiens

text: CLiPP-Seq


text: public

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16127

text: not collected

text: human

text: India

text: Homo sapiens

text: Homo sapiens

text: CLiPP-Seq


text: public

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16128

text: not collected

text: human

text: India

text: Homo sapiens

text: Homo sapiens

text: CLiPPR-Seq


text: public

text: ena-SAMPLE-TAB-24-07-2023-10:16:49:382-16129

text: not collected

text: human

text: India

text: Homo sapiens

text: Homo sapiens

text: CLiPPR-Seq


characteristic: GISAID Accession ID

text: public

tag: Namespace:Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17187/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17191/2023

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17192/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17185/2023

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17193/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17189/2023

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17186/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17188/2023

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17183/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17184/2023

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

characteristic: Submitter Id

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collection date

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Lea Stauber, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230703_os_02/2023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230703_os_03/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230703_os_05/2023

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230703_os_04/2023

characteristic: title


Ranitomeya variabilis spotted

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ranitomeya variabilis spotted

tag: Namespace:GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: Zimmermann's poison frog

characteristic: common name

text: Ranitomeya variabilis spotted 0123

characteristic: description

text: Peru

text: Saposoa, San Martin, Peru

characteristic: geographic location (region and locality)

text: Ranitomeya variabilis

characteristic: organism

text: Ranitomeya variabilis


Ranitomeya variabilis striped

characteristic: ENA-CHECKLIST

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya variabilis striped

text: Zimmermann's poison frog

text: Ranitomeya variabilis striped 0127

text: Peru

text: Pongo de Cainarachi, San Martin, Peru

text: Ranitomeya variabilis

text: Ranitomeya variabilis


Ranitomeya amazonica

characteristic: ENA-FIRST-PUBLIC

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya amazonica

text: Ranitomeya amazonica 0406

text: Peru

text: Rio Tocon, Loreto, Peru

text: Ranitomeya amazonica

text: Ranitomeya amazonica


Ranitomeya ventrimaculata

characteristic: ENA-LAST-UPDATE

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya ventrimaculata

text: Amazonian poison frog

text: Ranitomeya ventrimaculata 0827

text: Peru

text: Rio Momon, Loreto, Peru

text: Ranitomeya ventrimaculata

text: Ranitomeya ventrimaculata


Ranitomeya uakarii

characteristic: External Id

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya uakarii

text: Ranitomeya uakarii 0115

text: Peru

text: Rio Tahuayo, Loreto, Peru

text: Ranitomeya uakarii

text: Ranitomeya uakarii


Ranitomeya summersi

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

characteristic: INSDC status

text: Ranitomeya summersi

text: Ranitomeya summersi 0108

text: Peru

text: Sauce, San Martin, Peru

text: Ranitomeya summersi

text: Ranitomeya summersi


Ranitomeya fantastica

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

characteristic: SRA accession

text: Ranitomeya fantastica

text: red-headed poison frog

text: Ranitomeya fantastica 0962

text: Peru

text: Micaela Bastidas, Loreto, Peru

text: Ranitomeya fantastica

text: Ranitomeya fantastica


Ranitomeya benedicta

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya benedicta

characteristic: Submitter Id

text: Ranitomeya benedicta 0048

text: Peru

text: Shucushyacu, Loreto, Peru

text: Ranitomeya benedicta

text: Ranitomeya benedicta


Ranitomeya toraro

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya toraro

characteristic: collection date

text: Ranitomeya toraro MCP 13095

text: Brazil

text: Carauari, Amazonas, Brazil

text: Ranitomeya toraro

text: Ranitomeya toraro


Ranitomeya vanzolinii

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya vanzolinii

text: Brazilian poison frog

text: Ranitomeya vanzolinii MCP 13500

text: Brazil

characteristic: geographic location (country and/or sea)

text: 10 km SW Cruzeiro do Sul, Acre, Brazil

text: Ranitomeya vanzolinii

text: Ranitomeya vanzolinii


Ranitomeya sirensis yellow

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya sirensis yellow

text: Sira poison frog

text: Ranitomeya sirensis yellow 16-126

text: Peru

text: Puerto Inca, Huanuco, Peru

text: Ranitomeya sirensis

text: Ranitomeya sirensis


Ranitomeya sirensis red

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya sirensis red

text: Sira poison frog

text: Ranitomeya sirensis red 16-137

text: Peru

text: Puerto Inca, Huanuco, Peru

text: Ranitomeya sirensis

text: Ranitomeya sirensis


Ranitomeya imitator varadero

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya imitator varadero

text: mimic poison frog

text: Ranitomeya imitator varadero 16-062

text: Peru

text: Vardero, Loreto, Peru

text: Ranitomeya imitator

text: Ranitomeya imitator


Ranitomeya imitator banded

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya imitator banded

text: mimic poison frog

text: Ranitomeya imitator banded 16-051

text: Peru

text: Sauce, San Martin, Peru

text: Ranitomeya imitator

text: Ranitomeya imitator


Ranitomeya imitator spotted

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya imitator spotted

text: mimic poison frog

text: Ranitomeya imitator spotted 16-038

text: Peru

text: Cainarachi valley, San Martin, Peru

text: Ranitomeya imitator

text: Ranitomeya imitator


Ranitomeya imitator striped

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya imitator striped

text: mimic poison frog

text: Ranitomeya imitator striped 16-006

text: Peru

text: Micaela Bastidas, Loreto, Peru

text: Ranitomeya imitator

text: Ranitomeya imitator


Ranitomeya cf. yavaricola

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya cf. yavaricola

text: Ranitomeya cf. yavaricola MCP 13495

text: Brazil

text: Eirunepe, Amazonas, Brazil

text: Ranitomeya yavaricola

text: Ranitomeya yavaricola


Ranitomeya flavovittata

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya flavovittata

text: Ranitomeya flavovittata 16-144

text: Peru

text: Requena, Loreto, Peru

text: Ranitomeya flavovittata

text: Ranitomeya flavovittata


Ranitomeya cyanovittata

text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Ranitomeya cyanovittata

text: Ranitomeya cyanovittata MCP 13502

text: Brazil

text: 50 km NW Cruzeiro do Sul, Amazonas, Brazil

text: Ranitomeya cyanovittata

text: Ranitomeya cyanovittata


COG-UK/PHWC-PKOAZW

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: public

text: COG-UK/PHWC-PKOAZW

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOAZW

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: not provided


COG-UK/PHWC-PKOGNT

text: public

text: COG-UK/PHWC-PKOGNT

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

text: COG-UK/PHWC-PKOGNT

text: not provided


E-MTAB-13161:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13161:Sample 1

tag: Namespace:Cardiff University School of Biosciences European Cancer Stem Cell Research Institute

text: ArrayExpress

text: hGBM

text: astrocyte

text: not collected

text: human

characteristic: common name

text: Protocols: Cultured human glioblastoma cell pellets were snap frozen until RNA extraction. Human glioblastoma cells were grown in N2 medium containing 20 ng/ml recombinant human EGF and 2% bovine serum albumin. Prior to RNA extraction, human glioblastoma cells were treated with 20 ng/ml recombinant human FGF2 for 48 hours. Total RNA was extracted using Qiagen RNeasy kit according to manufacturers instructions. Library preparation for RNA sequencing was performed using the Ion Total RNA-Seq V2 kit and Ion Xpress RNA-Seq Barcode kit (Thermo Fisher).

characteristic: description

text: adult

characteristic: developmental stage

text: glioblastoma multiforme

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: line

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-13161:Sample 2

text: Cardiff University School of Biosciences European Cancer Stem Cell Research Institute

text: public

characteristic: SRA accession

text: E-MTAB-13161:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: hGBM

text: astrocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 2


E-MTAB-13161:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13161:Sample 3

text: ArrayExpress

text: hGBM

text: astrocyte

text: not collected

text: human

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 3


E-MTAB-13161:Sample 4

text: public

characteristic: INSDC status

text: E-MTAB-13161:Sample 4

text: ArrayExpress

text: hGBM

text: astrocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: glioblastoma multiforme

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: line

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 4


E-MTAB-13161:Sample 5

text: public

characteristic: SRA accession

text: E-MTAB-13161:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: hGBM

text: astrocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-13161:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-13161:Sample 6

text: ArrayExpress

text: hGBM

text: astrocyte

text: not collected

text: human

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 6


E-MTAB-13161:Sample 7

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13161:Sample 7

text: ArrayExpress

text: hGBM

text: astrocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: glioblastoma multiforme

characteristic: disease

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 7


E-MTAB-13161:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-13161:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: hGBM

text: astrocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: glioblastoma multiforme

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: line

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 8


E-MTAB-13161:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-13161:Sample 9

text: ArrayExpress

text: hGBM

text: astrocyte

text: not collected

text: human

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 9

characteristic: title


COG-UK/PHWC-PKOKAY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOKAY

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOKAY

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTDKN

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKTDKN

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKTDKN

characteristic: title

text: not provided


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Helsinki

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #I158 collected at 52 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: weeks

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: male

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: infant born by C-Section

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

text: Stool sample Infant #I633 collected at 13 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

text: male

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: infant born by vaginal delivery

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #I633 collected at 26 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: male

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: infant born by vaginal delivery

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Department of Molecular and Cellular Pathology and Therapy, Instituto de Biomedicina de Valencia (IBV-CSIC)

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: baker's yeast

characteristic: common name

text: Protocols: After the respective treatment, cells were collected by centrifugation, washed with ice-cold water, and frozen in liquid nitrogen. hfd1∆ cells from a saturated preculture in YPD were inoculated at an OD600 0.1 in 30 mL of YPD medium 2% glucose and grown for 6 hours to OD600 0.8. t-2-hexadecenal (t-2-hex), dissolved in DMSO, was added from the stock solution (4.2 mM) to achieve a final concentration of 100 µM. An equal volume of DMSO (720 µL) was used for each of the control samples. The cells were incubated with DMSO for 1.5 hours and with t-2-hex for 3 hours. Total RNA extraction was performed using the acid phenol method. Cell pellets were resuspended in 400µL of TES buffer (10mM Tris/HCl pH 7.5, 10mM EDTA, 0.5% SDS) and an equal volume of acid phenol mix. The mixture was incubated at 65ºC for 45min. After 5 min on ice, phases were separated by centrifugation (1min, 10000rpm), and the aqueous phase was transferred to a new tube for another extraction with acid phenol. Again, the aqueous phase was transferred to another tube containing 40µL of 3M NaAcetate pH 5.0 and 2.5 volumes of 100% ethanol. Finally, RNA was pelleted by centrifugation at 14000rpm for 10min, washed once with 70% ethanol, and resuspended in 100µL of Milli-Q water. Following extraction, 50µg of total RNA were purified using RNeasy MiniKit (QIAGEN) according to the manufacturer's instructions. RNA integrity was assessed using a 1% agarose gel. Samples were submitted to BGI Genomics (Hong Kong) for quality control and subsequent sequencing. According to company pipeline, RNA integrity was evaluated using the Agilent Bioanalyzer 2100 (Agilent Technologies) and libraries constructed following DNBSEQ Eukaryotic Stranded Transcriptome library preparation protocol. First, mRNA enrichment and purification were performed using oligo dT selection, which involved the use of oligo dT beads to selectively enrich mRNA molecules that possess a poly A tail. Following mRNA enrichment, RNA fragmentation was carried out to generate smaller fragments for downstream processing. Next, reverse transcription was performed using random N6-primed reverse transcription, resulting in the synthesis of first-strand cDNA. To generate the second strand of cDNA, a second-strand synthesis reaction was conducted using dUTP instead of dTTP. The synthesized cDNA was subjected to end-repair and then was 3’ adenylated. Adaptors were ligated to the ends of these 3’ adenylated cDNA fragments; Prior to PCR amplification, the dUTP-marked strand is selectively degraded by Uracil-DNA-Glycosylase(UDG). The remaining strand is amplified to generate a cDNA library suitable for sequencing. Many rounds of PCR amplification were performed to enrich the purified cDNA template using PCR primer; After PCR amplification, the resulting double-stranded DNA was denatured by heat, leading to the separation of the two strands. Subsequently, the single-stranded DNA was cyclized using a splint oligo and DNA ligase. Finally, DNA nanoballs were synthesized from the cyclized DNA.

characteristic: genetic modification

text: MATa; his3∆1; leu2∆0; met15∆0; ura3∆0; hfd1Δ::KanMX

characteristic: genotype

text: not collected

text: YEPD

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BY4741 hfd1Δ

characteristic: strain


characteristic: ENA-CHECKLIST

text: Department of Molecular and Cellular Pathology and Therapy, Instituto de Biomedicina de Valencia (IBV-CSIC)

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: baker's yeast

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: YEPD

text: not applicable

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BY4741 hfd1Δ

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Strasbourg

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Strasbourg

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: Primary human melanoma cell lines were purchased from Rockland and cultured in MCDB153 (ref. n°M7403, Merck/Sigma-Aldrich) and Leibovitz’s L-15 medium (ref. n°11415064, Thermo Fisher Scientific) in a 4 to 1 ratio, supplemented with 2% foetal bovine serum, 1.68 mM CaCl2 and 1% penicillin/streptomycin. RNA was isolated from melanoma cell lines using the RNeasy Mini Kit (Qiagen, Hilden, Germany). RNA integrity was evaluated on an Agilent Bioanalyzer 2100 using an Agilent RNA 6000 Pico Kit (Agilent Technologies, Santa Clara, CA). Sequencing libraries were prepared using “NEBNext Ultra II Directional RNA Library Prep Kit for Illumina” combined with “NEB Ultra II polyA mRNA magnetic isolation” for mRNA enrichment (New England Biolabs, Ipswich, MA, USA).

characteristic: description

text: not available

characteristic: developmental stage

text: melanoma

characteristic: disease

text: radial growth phase

characteristic: disease staging

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Strasbourg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: not collected

text: human

text: adult

text: melanoma

text: vertical growth phase

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: University of Strasbourg

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: melanoma

text: metastatic

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


COG-UK/PHWC-PKOXIB

text: public

text: COG-UK/PHWC-PKOXIB

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOXIB

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTYDU

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTYDU

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTYDU

characteristic: title

text: not provided


text: Shanghai Tenth People's Hospital

text: public

tag: Namespace:Shanghai Tenth People's Hospital

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: baker's yeast

characteristic: common name

text: Protocols: Cells were grown in YPD broth at 30˚C from OD600=0.01 till OD600=1.0. Pellets of 5ml cell culture were obtained by centrifuging at maximum speed for 1min. the pellets were fast frozen in liquid nitrogen. RNA was extracted using the TRIzol method following the manufacturer's protocol. Cell pellets were transferred from liquid nitrogen into the 2ml tub containing 1.5ml Trizol reagent. The mix was shared for 3min, and kept for 5in at room temperature, then centrifuged at 10,000xg for 5min at 4˚C. The supernatant was added 200µl of chloroform/isoamyl alcohol (24:1) with 1ml lysis reagents. After centrifuged at 10,000g for 10min at 4˚C, the supernatant was transferred into another new tube with equal volume of isopropanol and put in the refrigerator at -20˚C for 1h. After centrifuged at 13600xg for 20min at 4˚C, the supernatant was precipitated by 1ml of 75% ethanol and let dry for 3-5min. The RNA pellet was dissolved with 30-100µl of DEPC water. The concentration of the extracted RNA was determined using a Nanodrop system (NanoDrop, Madison, USA), and the integrity of the RNA was examined by the RNA integrity number (RIN) using an Agilent 2100 bioanalyzer (Agilent, Santa Clara, USA) buffer at appropriate temperature. Then First-strand cDNA was generated using random hexamer-primed reverse transcription, followed by a second-strand cDNA synthesis. afterwards, A-Tailing Mix and RNA Index Adapters were added by incubating to end repair. The cDNA fragments obtained from previous step were amplified by PCR, and products were purified by Ampure XP Beads, then dissolved in EB solution. The product was validated on the Agilent Technologies 2100 bioanalyzer for quality control. The double stranded PCR products from previous step were heated denatured and circularized by the splint oligo sequence to get the final library. The single strand circle DNA (ssCir DNA) was formatted as the final library.

characteristic: description

text: log phase

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: YPD broth

characteristic: growth condition

text: not applicable

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Shanghai Tenth People's Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: baker's yeast

text: log phase

text: wild type genotype

text: not collected

text: YPD broth

text: not applicable

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: petite

text: Saccharomyces cerevisiae