text: public

text: Baldridge_25_CAGGCGTATTGG_ACGACGTCTTAG_S36

text: house mouse

text: Mus musculus

text: Mus musculus


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Baldridge_26_CAGGCGTATTGG_GGAATCTGAGCC_S37

tag: Namespace:WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

characteristic: Submitter Id

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


text: WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

text: public

text: Baldridge_27_CAGGCGTATTGG_GGCACTACCAAG_S38

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_28_CAGGCGTATTGG_TAAGCGCAGCAC_S39

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_29_CAGGCGTATTGG_GTGCCTCCTACT_S40

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_30_CAGGCGTATTGG_CGAAATCCGGGT_S41

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_31_CAGGCGTATTGG_TTCATACGGACG_S42

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_32_CAGGCGTATTGG_GATTCCTAATCG_S43

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_33_GGATCGCAGATC_ACGACGTCTTAG_S44

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_34_GGATCGCAGATC_GGAATCTGAGCC_S45

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_35_GGATCGCAGATC_GGCACTACCAAG_S46

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_36_GGATCGCAGATC_TAAGCGCAGCAC_S47

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_37_GGATCGCAGATC_GTGCCTCCTACT_S48

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_38_GGATCGCAGATC_CGAAATCCGGGT_S49

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_39_GGATCGCAGATC_TTCATACGGACG_S50

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_40_GGATCGCAGATC_GATTCCTAATCG_S51

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_41_GCTGATGAGCTG_ACGACGTCTTAG_S52

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_42_GCTGATGAGCTG_GGAATCTGAGCC_S53

text: house mouse

text: Mus musculus

text: Mus musculus


text: WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

text: public

text: Baldridge_43_GCTGATGAGCTG_GGCACTACCAAG_S54

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_44_GCTGATGAGCTG_TAAGCGCAGCAC_S55

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: Baldridge_45_GCTGATGAGCTG_GTGCCTCCTACT_S56

text: house mouse

text: Mus musculus

text: Mus musculus


text: Technical University of Denmark

text: public

tag: Namespace:Technical University of Denmark

text: human-gut

characteristic: broad-scale environmental context

characteristic: collection date

text: human

text: feces

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: metagenome

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: mESC

text: embryonic stem cell

text: house mouse

text: Protocols: Naïve murine embryonic stem cells (mESC) were derived freshly (FVB or mixed 129/B6)  and were routinely cultured on gelatin-coated plates in t2i/L media: NDiff (N2B27) (Takara #y40002) supplemented with titrated 2i (0.2 μM PD0325901 and 3 μM CHIR 99021), 1,000 U/ml leukaemia inhibitory factor (LIF), 1% FBS, 1% penicillin streptomycin and maintained in humidified atmosphere at 37°C and 5% CO2. Cells were passaged every 2 days by dissociation with TrypLE and medium was changed daily. Total RNA was isolated from cell pellets using NEB Monarch® Total RNA Miniprep Kit and libraries prepared using NEBNext RNA Ultra II kit (NEB E7770S, input: 350 ng of total RNA). RNA-sequencing of polyA RNA from mouse Embryonic Stem Cells. Total RNA was isolated using the Monarch® Total RNA Miniprep Kit (NEB #T2010S), including gDNA removal step and on-column DNase I digestion. Total RNA was quantified using Qubit III and quality assessed with high-sensitivity RNA Screen Tape (Agilent 5067-5579). Stranded mRNA-seq libraries were prepared with the NEBNext RNA Ultra II kit (input: 350 ng of total RNA) following the manufacturer’s instructions.

text: stable integration of dCas9-GCN4, Dnmt3a3L-CDscFV and gRNA against Hbby locus

characteristic: genetic modification

text: dCas9-GCN4, Dnmt3a3L-CDscFV

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: FVB/NJ or mixed C57BL/6 and 129 mouse strain

characteristic: strain


text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: common name

characteristic: description

text: stable integration of dCas9-GCN4, DotL-CDscFV and gRNA against Hbby locus

text: dCas9-GCN4, DotL-CDscFV

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: stable integration of dCas9-GCN4, Ezh2-FLscFV and gRNA against Hbby locus

text: dCas9-GCN4, Ezh2-FLscFV

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: stable integration of dCas9-GCN4, G9a-CDscFV and gRNA against Hbby locus

text: dCas9-GCN4, G9a-CDscFV

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: EMBL

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: mESC

text: embryonic stem cell

text: house mouse

text: stable integration of dCas9-GCN4, GFP-scFV and gRNA against Hbby locus

characteristic: genetic modification

text: dCas9-GCN4, GFP-scFV

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: GFP


text: EMBL

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: dCas9-GCN4, GFP-scFV

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain


text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: stable integration of dCas9-GCN4, Kmt5C-FLscFV and gRNA against Hbby locus

text: dCas9-GCN4, Kmt5C-FLscFV

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

characteristic: common name

characteristic: description

text: stable integration of dCas9-GCN4, p300-CDscFV and gRNA against Hbby locus

text: dCas9-GCN4, p300-CDscFV

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: stable integration of dCas9-GCN4, Prdm9-CDscFV and gRNA against Hbby locus

text: dCas9-GCN4, Prdm9-CDscFV

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: stable integration of dCas9-GCN4, Ring1b-CDscFV and gRNA against Hbby locus

text: dCas9-GCN4, Ring1b-CDscFV

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: mESC

text: embryonic stem cell

text: house mouse

text: stable integration of dCas9-GCN4, Setd2-CDscFV and gRNA against Hbby locus

text: dCas9-GCN4, Setd2-CDscFV

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: Protocols: Naïve murine embryonic stem cells (mESC) were derived freshly (FVB or mixed 129/B6) and were routinely cultured on gelatin-coated plates in t2i/L media: NDiff (N2B27) (Takara #y40002) supplemented with titrated 2i (0.2 μM PD0325901 and 3 μM CHIR 99021), 1,000 U/ml leukaemia inhibitory factor (LIF), 1% FBS, 1% penicillin streptomycin and maintained in humidified atmosphere at 37°C and 5% CO2. Cells were passaged every 2 days by dissociation with TrypLE and medium was changed daily. To induce epiblast-like cell (EpiLC) differentiation, naïve mouse ESCs were seeded on fibronectin-coated plates in NDiff (N2B27) (Takara #y40002) supplemented with 20 ng/ml ActivinA (PeproTech #120-14P), 12 ng/ml bFGF (PeproTech #450-33), 1% knockout serum replacement (Thermo Fisher #10828010) and 1% penicillin streptomycin. Cell were harvested ~40 hours after EpiLC induction. Total RNA was isolated using the Monarch® Total RNA Miniprep Kit (NEB #T2010S), including gDNA removal step and on-column DNase I digestion. RNA-sequencing of polyA RNA from mouse Embryonic Stem Cells. Total RNA was quantified using Qubit III and quality assessed with high-sensitivity RNA Screen Tape (Agilent 5067-5579). Stranded mRNA-seq libraries were prepared with the NEBNext RNA Ultra II kit (input: 350 ng of total RNA) following the manufacturer’s instructions.

text: embryo stage

characteristic: developmental stage

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

characteristic: stimulus

text: FVB/NJ


text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12103:21-030_11_mll2CM_EpiLC_rep1

characteristic: Submitter Id

text: ArrayExpress

text: mESC

text: epiblast-like cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: targeted mutation

text: homozygous mll2[Y2602A]

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: epiblast-like cell differentiation induction

text: FVB/NJ

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: E-MTAB-12103:21-030_14_mll2CM_EpiLC_rep1

text: ArrayExpress

text: mESC

text: epiblast-like cell

text: house mouse

text: embryo stage

text: targeted mutation

text: homozygous mll2[Y2602A]

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: FVB/NJ

characteristic: title


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12103:21-030_17_mll2CM_EpiLC_rep1

text: ArrayExpress

characteristic: broker name

text: mESC

text: epiblast-like cell

text: house mouse

text: embryo stage

characteristic: developmental stage

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB/NJ


text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: mESC

text: embryonic stem cell

text: house mouse

text: embryo stage

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: stimulus

text: FVB/NJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

characteristic: Submitter Id

text: ArrayExpress

text: mESC

text: epiblast-like cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

text: FVB/NJ

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:CANCER RESEARCH UK CAMBRIDGE INSTITUTE

unit: week

characteristic: age

text: ArrayExpress

text: CD8-positive, alpha-beta cytotoxic T cell

text: house mouse

text: Protocols: Cells were harvested by carefully removing media and adding 350 uL RLT lysis buffer supplemented with 1% v/v b-mercaptoethanol. Resting cells were pelleted by centrifugation and lysed in the same manner. Spleens were dissected post-mortem under sterile conditions. OT-I CTLs were differentiated and cultured from murine splenocytes in complete media, composed of RPMI 1640, 10 % heat inactivated FCS, 100 U/mL penicillin / 0.1 mg/mL streptomycin, 2 mM L-glutamine, 1 mM sodium pyruvate, 50 uM b-mercaptoethanol, and 20 ng/mL (≥ 100 U/mL) murine IL-2. Spleens were homogenized through a 70 μm filter and cultured in complete media with 10 nM SIINFEKL peptide for 3 days. Media was then changed and cells expanded daily until day 7. Flat-bottom tissue culture plates were coated with 1 μg/mL anti-CD3e (clone 145-2C11, BD Biosciences) in PBS at 37°C for 1 hour. Plates were then washed in PBS. Two million CTLs were stimulated on an antibody-coated 12-well plate for 10, 20, 40, and 60 minutes. For unstimulated control, cells were plated without antibody coating. Lysates were passed through a Qiashredder and frozen. RNA was extracted using the RNEasy Mini Kit and on-column DNA digestion with RNAse-free DNAse I. RNA quality was verified by Bioanalyzer 2100, and quantity was determined using a Qubit Fluorometer (v. 3). Libraries were prepared for sequencing with the TruSeq Stranded mRNA kit (Illumina).

text: adult

text: OT-I; Rag1 knockout

characteristic: individual

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: female

characteristic: title


text: UNIVERSITY OF BRISTOL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BRISTOL

text: polar environment

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

text: 16S rRNA gene amplicon sequencing of Antarctic soil

characteristic: elevation

text: soil

characteristic: environmental medium

text: Antarctica

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lake Terrasovoe

characteristic: local environmental context

text: soil metagenome

text: Antarctic microbial communities from Prince Charles Mountains and East Antarctic Coast

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRISTOL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: polar environment

characteristic: description

text: soil

text: Antarctica

text: Antarctic East Coast

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina MiSeq


text: UNIVERSITY OF BRISTOL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: polar environment

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: soil

text: Antarctica

text: Reinbolt Hills

text: soil metagenome

text: soil metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BRISTOL

text: public

text: polar environment

text: soil

characteristic: environmental medium

text: Antarctica

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mawson Escarpment

characteristic: local environmental context

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRISTOL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: polar environment

characteristic: description

text: soil

text: Antarctica

text: Mount Menzies

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina MiSeq


NC

text: UNIVERSITY OF BRISTOL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NC

text: negative control

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: elevation

text: negative control

text: South Africa

text: negative control

text: soil metagenome

text: soil metagenome

text: Illumina MiSeq

text: NC

characteristic: title


HCT-116 WT

characteristic: ENA-CHECKLIST

text: Janssen Pharmaceutica

text: public

text: HCT-116 WT

tag: Namespace:Janssen Pharmaceutica

text: human

characteristic: common name

text: Parental cell

text: Homo sapiens

text: Homo sapiens

text: Parental


HCT-116 KO

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Janssen Pharmaceutica

text: public

text: HCT-116 KO

text: human

text: KO cell

text: Homo sapiens

text: Homo sapiens


E-MTAB-12085:Sample 1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-12085:Sample 1

tag: Namespace:Instituto de Medicina Molecular Joao Lobo Antunes

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T follicular helper cell

text: house mouse

text: Protocols: Healthy female C57BL/6 Foxp3GFP reporter mice aged between 8 to 12 weeks were used. The mice were immunized subcutaneously in the footpad with ovalbumin (Ovalbumin EndoFit, Invivogen, Catalogue #vac-pova) either emulsified 1:1 (v:v) with incomplete Freund's adjuvant (IFA, Sigma-Aldrich, Catalogue #F5506), or entrapped with CpG in polymeric nanoparticles (NP-CpG). Each animal was inoculated in the paw with one of the antigen/adjuvant mixtures, with a volume of 50 μL per paw containing 80 μg of OVA and 30 μg of NP-CpG. Popliteal lymph nodes were collected on day 11 following immunization. Single-cell suspensions were obtained by disrupting the lymph nodes in PBS (Lonza) with 2% FBS (Gibco) with curved forceps and a nylon mesh. Surface stainings were performed in the same buffer with the following monoclonal antibodies or reagents: anti-CD4 (RM4-4, Biolegend), anti-CD185/CXCR5 (2G8, BD Bioscience), and Streptavidin (Biolegend). DAPI (Biolegend) was used for dead-cell exclusion. Tfh and Treg cells were enriched by fluorescence-activated cell sorting (FACS) on a BD FACSAria cell sorter using the following gating strategy: Tfh cells as CD4+GFP(Foxp3)-CXCR5+ and Treg cells as CD4+GFP(Foxp3)+CXCR5-. For OVA/IFA immunization subset, Tfh cells were used. For OVA/NP-CpG immunization, both Tfh cells from OVA/NP-CpG immunization and naïve Treg cells from non-immunization were mixed in 1:1 ratio before loading into the 10X Chromium equipment. Single-cell libraries of FACS-sorted CXCR5+ Tfh from OVA/IFA and OVA/NP-CpG immunizations were generated using the 10x Genomics Chromium Single Cell 5' V(D)J reagents (10x Genomics; PN-1000006 and PN-1000020) according to the manufacturer's protocol. Single-cell libraries of FACS-sorted CXCR5+ Tfh from OVA/IFA and OVA/NP-CpG immunizations were generated using the 10x Genomics Chromium Single Cell 5' V(D)J reagents (10x Genomics; PN-1000006 and PN-1000020) according to the manufacturer's protocol.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lymph node

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-12085:Sample 2

text: Instituto de Medicina Molecular Joao Lobo Antunes

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12085:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: T follicular helper cell

text: house mouse

characteristic: description

text: adult

text: normal

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

text: Sample 2


E-MTAB-12085:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-12085:Sample 3

text: ArrayExpress

text: T follicular helper cell

text: house mouse

characteristic: common name

text: adult

text: normal

text: not applicable

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

text: Sample 3

characteristic: title


E-MTAB-12085:Sample 4

text: public

text: E-MTAB-12085:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T follicular helper cell

text: house mouse

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lymph node

characteristic: organism part

text: Mus musculus

text: female

text: Sample 4


E-MTAB-12085:Sample 5

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12085:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: T follicular helper cell and T regulatory cell

text: house mouse

text: adult

text: normal

text: not applicable

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 5


E-MTAB-12085:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-12085:Sample 6

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: normal

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

text: Sample 6


E-MTAB-12085:Sample 7

text: public

text: E-MTAB-12085:Sample 7

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: lymph node

text: Mus musculus

text: female

text: Sample 7

characteristic: title


E-MTAB-12085:Sample 8

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12085:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lymph node

characteristic: organism part

text: Mus musculus

text: female

text: Sample 8


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Basel

characteristic: INSDC center name

text: public

tag: Namespace:University of Basel

text: metagenome

text: metagenome


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: RNA-seq DP1 0h

characteristic: description

text: Moneuplotes crassus

characteristic: organism

text: Moneuplotes crassus

characteristic: strain


text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: RNA-seq DP3 0h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

text: RNA-seq DP1+3 0h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

text: RNA-seq DP1+3 24h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

text: RNA-seq DP1+3 44h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

text: RNA-seq DP3 44h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

text: RNA-seq DP1+3 50h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

text: RNA-seq DP1+3 92h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

text: RNA-seq DP1+3 120h

text: Moneuplotes crassus

text: Moneuplotes crassus


text: public

tag: Namespace:Junior Research Group Somatic Evolution and Early Detection German Cancer Research Center (DKFZ), Heidelberg, Germany

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Mouse was killed by CO2, ovaries dissected and embedded into a cryomold containing OCT and frozen in isopentane on dry ice. Estrous cycle was evaluated by crystal violet staining. Visium Spatial Gene Expression (Rev. D, 10X Genomics) Visium Spatial Gene Expression (Rev. D, 10X Genomics)

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: ovary

text: Mus musculus

text: female

characteristic: sex


text: Sorbonne Universite

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Sorbonne Universite

characteristic: Submitter Id

text: human associated

characteristic: broad-scale environmental context

text: restricted access

text: Gut metagenome

text: stool

characteristic: environmental medium

text: restricted access

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: NAFLD grade: Control/Fibrosis stage 0

characteristic: liver disorder

text: gut

characteristic: local environmental context

text: human gut metagenome

text: EPoS metagenomics

characteristic: project name

text: human gut metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sorbonne Universite

characteristic: INSDC center name

text: public

text: human associated

text: restricted access

text: Gut metagenome

characteristic: description

text: stool

text: restricted access

text: restricted access

text: restricted access

text: NAFLD grade: NAFL/Fibrosis stage <2

text: gut

text: human gut metagenome

characteristic: organism

text: EPoS metagenomics

text: human gut metagenome

text: Illumina HiSeq 2500


text: Sorbonne Universite

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human associated

characteristic: broad-scale environmental context

text: restricted access

text: Gut metagenome

text: stool

text: restricted access

text: restricted access

text: restricted access

text: NAFLD grade: NASH/Fibrosis stage <2

text: gut

text: human gut metagenome

text: EPoS metagenomics

text: human gut metagenome

text: Illumina HiSeq 2500


text: Sorbonne Universite

text: public

text: human associated

text: restricted access

text: Gut metagenome

text: stool

characteristic: environmental medium

text: restricted access

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: NAFLD grade: NAFL/Fibrosis stage >=2

characteristic: liver disorder

text: gut

characteristic: local environmental context

text: human gut metagenome

text: EPoS metagenomics

text: human gut metagenome

text: Illumina HiSeq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sorbonne Universite

text: public

text: human associated

text: restricted access

text: Gut metagenome

text: stool

text: restricted access

text: restricted access

text: restricted access

text: NAFLD grade: NASH/Fibrosis stage >=2

text: gut

text: human gut metagenome

text: EPoS metagenomics

characteristic: project name

text: human gut metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: title


characteristic: External Id

text: Sorbonne Universite

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human associated

text: restricted access

text: Gut metagenome

characteristic: description

text: stool

text: restricted access

text: restricted access

text: restricted access

text: NAFLD grade: NAFL/Fibrosis stage 0

text: gut

text: human gut metagenome

characteristic: organism

text: EPoS metagenomics

text: human gut metagenome

text: Illumina HiSeq 2500


text: Sorbonne Universite

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human associated

characteristic: broad-scale environmental context

text: restricted access

text: Gut metagenome

text: stool

characteristic: environmental medium

text: restricted access

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: NAFLD grade: NASH/Fibrosis stage 0

text: gut

text: human gut metagenome

text: EPoS metagenomics

text: human gut metagenome

text: Illumina HiSeq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sorbonne Universite

text: public

text: human associated

text: restricted access

text: Gut metagenome

text: stool

text: restricted access

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: NAFLD grade: Control/Fibrosis stage >=2

characteristic: liver disorder

text: gut

characteristic: local environmental context

text: human gut metagenome

text: EPoS metagenomics

text: human gut metagenome

text: Illumina HiSeq 2500


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sorbonne Universite

characteristic: INSDC center name

text: public

text: human associated

text: restricted access

text: Gut metagenome

text: stool

text: restricted access

text: restricted access

text: restricted access

text: NAFLD grade: Control/Fibrosis stage <2

text: gut

text: human gut metagenome

text: EPoS metagenomics

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: title


text: Sorbonne Universite

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human associated

text: restricted access

text: Gut metagenome

characteristic: description

text: stool

text: restricted access

text: restricted access

text: restricted access

text: NAFLD grade: Control/Fibrosis stage 0

text: gut

text: human gut metagenome

characteristic: organism

text: EPoS metagenomics

text: human gut metagenome

text: Illumina NovaSeq 6000


E-MTAB-12123:Adult testes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12123:Adult testes

tag: Namespace:Department of Physiology, Development and Neuroscience

characteristic: Submitter Id

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: white-tufted-ear marmoset

characteristic: common name

text: Protocols: iPS cells were dissociated using Accumax. PGCLCs, ovaries (E74, E82, and newborn), and testes (E87 and 22 dpp) were dissociated using 0.25% Trypsin EDTA. Adult testes (3yr10mnth) were digested by a stepwise treatment of collagenease1 (1mg/ml) and 0.25% Trypsin EDTA. Marmoset iPSCs were cultured in the MEF-conditioned Primate ES cell medium (Reprocell, RCHEMD001) containing bFGF (Reprocell, RCHEOT003) and 1×Antibiotic-Antimycotic (Nacalai, 0289-54)8. iPSCs were dissociated into single cells for passaging by treatment with Accumax (Nacalai, 17087-54) at 37℃. We typically plated 5.0 × 104 cells into one well of 6-well cell culture plates in a conditioned medium containing iMatrix (FUJIFILM Wako, 892021) and 10 µM Y-27632 (Nacalai, 08945-42). iPSCs (lines 971 and 972) were induced from ear fibroblast cells. For the generation of PGCLCs from iPSCs, a lipofection-based mRNA transfection was used. The day before transfection (Day 0), 5.0 × 104 marmoset iPSCs were plated onto 12-well cell culture plates. The next day (Day 1), the medium was replaced with 500 µl of new conditioned medium. For transfection, two tubes containing 62.5 ul of OPTI-MEM (Invitrogen) were prepared. In one tube, RNAs [ 0.2 µg of SOX17 mRNA, 0.03 µg of P53DD mRNA, 0.75 µg of the mixture of E3, K3, B18R mRNAs (Reprocell)] were added. In the other tube, 1.5 µl of RNAiMax was added. After mixing well each tube, solutions in two tubes are mixed together. The mixture was left for 10 minutes. The mixture was mildly dropped onto one well of 12-well plate. The next day (Day 2), the medium was replaced with 500 µl of new conditioned medium, and RNA transfection was performed again. Medium change and RNA transfection were usually performed at 10 am and 4 pm, respectively. On Day 3 morning (~10 am), the cells were dissociated using Accumax. ~5,000 cells were plated onto each well of Nunclon™ Sphera™ 96-Well plate (Thermo Fisher Scientific, 174929) in 100 µl of aRB27 (1%B27/2 mM L-glutamine/1×Non-essential amino acids/1×Antibiotic-Antimycotic in Advanced RPMI medium) containing 50 mM EGF (R＆D systems, 236-EG-200), 100 mM SCF (R＆D systems, 455-MC-050), 10 ng/ml LIF (Merck, LIF1010), 400 mM BMP4 (R＆D systems, 314-BP-500), and 10 µM Y-27632. The medium change was performed every four days. For iPS cells, PGCLCs, and E82 ovary, the libraries were made using Chromium Next GEM Single Cell 3’ GEM Library & Gel Bead Kit v3 (10x Genomics). Other libraries were made using Chromium Single Cell 3’ Library and Gel Bead Kit v2 (10x Genomics). For iPS cells, PGCLCs, and E82 ovary, the libraries were made using Chromium Next GEM Single Cell 3’ GEM Library & Gel Bead Kit v3 (10x Genomics). Other libraries were made using Chromium Single Cell 3’ Library and Gel Bead Kit v2 (10x Genomics).

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: testis

characteristic: organism part

characteristic: progenitor cell type

text: Callithrix jacchus

text: male

characteristic: sex

text: Adult testes


E-MTAB-12123:Day 22 testes

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Physiology, Development and Neuroscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12123:Day 22 testes

unit: day

text: ArrayExpress

text: white-tufted-ear marmoset

text: infant

text: wild type genotype

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: testis

text: Callithrix jacchus

text: male

text: Day 22 testes

characteristic: title


E-MTAB-12123:E74 ovaries

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12123:E74 ovaries

text: embryonic day 74

text: ArrayExpress

text: white-tufted-ear marmoset

characteristic: description

text: embryonic day 74

text: wild type genotype

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: ovary

text: Callithrix jacchus

text: female

text: E74 ovaries


E-MTAB-12123:E74 testes

text: public

text: E-MTAB-12123:E74 testes

characteristic: Submitter Id

text: embryonic day 74

characteristic: age

text: ArrayExpress

characteristic: broker name

text: white-tufted-ear marmoset

characteristic: common name

text: embryonic day 74

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: testis

text: Callithrix jacchus

text: male

text: E74 testes


E-MTAB-12123:E82 ovaries

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12123:E82 ovaries

text: embryonic day 82

text: ArrayExpress

text: white-tufted-ear marmoset

text: embryonic day 82

text: wild type genotype

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: ovary

characteristic: organism part

characteristic: progenitor cell type

text: Callithrix jacchus

text: female

characteristic: sex

text: E82 ovaries


E-MTAB-12123:E87 testes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12123:E87 testes

text: embryonic day 82

text: ArrayExpress

text: white-tufted-ear marmoset

text: embryonic day 82

text: wild type genotype

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: testis

text: Callithrix jacchus

text: male

text: E87 testes

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: iPSC

text: primordial germ cell like cell

text: white-tufted-ear marmoset

characteristic: description

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: induced pluripotent stem cell

text: Callithrix jacchus

text: female

text: iPGCLC


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: iPSC

text: induced pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

characteristic: developmental stage

characteristic: genotype

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: induced pluripotent stem cell

text: Callithrix jacchus

text: female

text: iPSC


E-MTAB-12123:Newborn ovaries

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12123:Newborn ovaries

unit: year

text: ArrayExpress

text: white-tufted-ear marmoset

text: neonate

text: wild type genotype

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: ovary

characteristic: organism part

characteristic: progenitor cell type

text: Callithrix jacchus

text: female

characteristic: sex

text: Newborn ovaries


Control

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Control

tag: Namespace:DST/NRF Centre of Excellence for Biomedical TB research, SAMRC Centre for TB Research

characteristic: collection date

text: Control purified DNA

text: South Africa

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Mtb

text: Sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Control

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DST/NRF Centre of Excellence for Biomedical TB research, SAMRC Centre for TB Research

text: public

characteristic: Submitter Id

text: 0.1 pg input DNA

characteristic: description

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb

text: Sputum

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 0.5 pg input DNA

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb

characteristic: isolate

text: Sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1 pg input DNA

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb

text: Sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 5 pg input DNA

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb

text: Sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Center for Bioinformatics

text: public

characteristic: SRA accession

tag: Namespace:Center for Bioinformatics

text: ocean biome

characteristic: broad-scale environmental context

characteristic: depth

text: Marine sediment metegenomic DNA

characteristic: elevation

characteristic: environmental medium

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: sediment samples

characteristic: local environmental context

text: marine sediment metagenome

text: Marine sediment metegenomic DNA

characteristic: project name

text: marine sediment metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Bioinformatics

text: public

characteristic: Submitter Id

text: ocean biome

text: Marine sediment metegenomic DNA

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: sediment samples

text: marine sediment metagenome

characteristic: organism

text: marine sediment metagenome

characteristic: title


name: SAMIN0000052-Genome sequencing and assembly of B. Carinata HC20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Centre for Genetic Manipulation of Crop Plants, University of Delhi South Campus, Prof. Deepak Pental and Dr. Paritosh Kumar

text: 15 days

characteristic: age

text: IBDC

characteristic: broker name

characteristic: common name

text: Homozygous plants of B. carinata accession HC20 were used for genome sequencing experiments. The HC20 accession was maintained by self-pollination for several generations and was mostly homozygous. For genome sequencing experiments, seedlings were grown in a growth chamber at 8 h light, 25 degree Celsius and 16 h dark, 10 degree Celsius cycle. Leaves were harvested from 15-days-old seedlings and immediately snap-frozen in liquid nitrogen and used for DNA extraction.

text: Seedling stage

characteristic: genotype

text: Brassica carinata

text: leaf

characteristic: organism part

text: Tetraploid-BBCC

characteristic: ploidy

text: Brassica carinata


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIGA, University of Liege

text: public

characteristic: SRA accession

tag: Namespace:GIGA, University of Liege

characteristic: Submitter Id

text: cattle

text: Bos taurus

text: Bos taurus


text: The Pirbright Institute

text: public

tag: Namespace:The Pirbright Institute

text: African malaria mosquito

text: transcriptome of a wild-type G3 strain 4 h-old male pupae

characteristic: description

text: Anopheles gambiae

characteristic: organism

text: Anopheles gambiae

text: male

characteristic: sex

characteristic: title


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Pirbright Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: African malaria mosquito

text: transcriptome of a wild-type G3 strain 4 h-old female pupae

text: Anopheles gambiae

text: Anopheles gambiae

text: female


text: Michael

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: University of Helsinki

text: public

tag: Namespace:University of Helsinki

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I87 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: weeks

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I77 collected at 3 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I86 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I94 collected at 3 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

characteristic: delivery mode

text: Stool sample Infant #I77 collected at 6 weeks of age

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: urban biome (ENVO:01000249)

text: infant born by C-Section

text: Stool sample Infant #I86 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: infant born by C-Section

text: Stool sample Infant #I87 collected at 6 weeks of age

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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