COG-UK/PHWC-PKOGOW

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOGOW

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOGOW

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTGJB

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTGJB

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak

text: not provided

text: COG-UK/PHWC-PKTGJB

text: not provided


COG-UK/PHWC-PKTDSJ

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: public

text: COG-UK/PHWC-PKTDSJ

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTDSJ

text: not provided


COG-UK/PHWC-PKOETO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOETO

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOETO

characteristic: title

text: not provided

characteristic: virus identifier


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided


COG-UK/PHWC-PKORSK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKORSK

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKORSK

text: not provided


COG-UK/PHWC-PKONEJ

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKONEJ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKONEJ

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKXHXR

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKXHXR

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKXHXR

text: not provided


COG-UK/PHWC-PKOQIN

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOQIN

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOQIN

text: not provided


COG-UK/PHWC-PKTGBT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKTGBT

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKTGBT

characteristic: title

text: not provided

characteristic: virus identifier


text: University of Helsinki

text: public

characteristic: SRA accession

tag: Namespace:University of Helsinki

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample from a pregnant mother #643 collected during pregnancy

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: years

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: adult stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample from a pregnant mother #556 collected during pregnancy

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

characteristic: host sex

characteristic: host subject id

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: adult stool sample

characteristic: title


COG-UK/PHWC-PKTGFJ

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKTGFJ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKTGFJ

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOIPC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOIPC

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOIPC

characteristic: title

text: not provided


COG-UK/PHWC-PKOBBA

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKOBBA

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOBBA

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTDTU

text: public

characteristic: SRA accession

text: COG-UK/PHWC-PKTDTU

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTDTU

characteristic: title

text: not provided


COG-UK/PHWC-PKOKZN

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PKOKZN

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

text: COG-UK/PHWC-PKOKZN

text: not provided


text: public

characteristic: SRA accession

tag: Namespace:Institute of Molecular Genetics of the Czech Academy of Sciences

characteristic: Submitter Id

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: endothelial cell

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

text: Protocols: Dechorionated embryos were collected at defined stages, dissociated by pipetting, centrifugation at 300g for 5 minutes, washed once with PBS, and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter (Bio-Rad). Samples were then re-suspended in 1x PBS with 0.05% BSA at 800-3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4,000 cells. Chromium Single Cell 3ʹ GEM, Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4,000 cells. Chromium Single Cell 3ʹ GEM, Library & Gel Bead Kit v2 or v3 was used for library preparation.

characteristic: description

text: 12 somite stage

characteristic: developmental stage

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: immunophenotype

text: not applicable

characteristic: isolate

text: Danio rerio

text: Danio rerio

text: embryo

characteristic: organism part

text: Danio rerio

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Genetics of the Czech Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: endothelial cell

text: not collected

text: zebrafish

text: 22 hpf

text: not collected

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: embryo

text: Danio rerio

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: endothelial cell

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

characteristic: description

text: tail bud prominent stage

characteristic: developmental stage

text: not collected

text: not applicable

text: Danio rerio

text: Danio rerio

text: embryo

text: Danio rerio


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: endothelial cell

text: not collected

text: zebrafish

text: 15 somite stage

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: immunophenotype

text: not applicable

characteristic: isolate

text: Danio rerio

text: Danio rerio

text: embryo

characteristic: organism part

text: Danio rerio

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: endothelial cell

text: not collected

text: zebrafish

text: 24 hpf

text: not collected

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: embryo

text: Danio rerio

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: endothelial cell

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

characteristic: description

text: 24 hpf

characteristic: developmental stage

text: fli1:DsRed, tp1:eGFP

text: not collected

text: fli1:DsRed+, tp1:eGFP+

text: not applicable

text: Danio rerio

text: Danio rerio

text: embryo

text: Danio rerio

text: fli1:DsRed, tp1:eGFP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKXHFA

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKXHFA

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKXHFA

characteristic: title

text: not provided


COG-UK/PHWC-PKOWAS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOWAS

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOWAS

text: not provided


COG-UK/PHWC-PKXIOE

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKXIOE

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKXIOE

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOGJD

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOGJD

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOGJD

characteristic: title

text: not provided


COG-UK/PHWC-PKTGDP

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTGDP

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKTGDP

text: not provided


COG-UK/PHWC-PKOCIR

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOCIR

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOCIR

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTBYA

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTBYA

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTBYA

characteristic: title

text: not provided


COG-UK/PHWC-PKXSYE

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKXSYE

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKXSYE

text: not provided


COG-UK/PHWC-PKOZBN

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOZBN

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOZBN

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKORMB

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKORMB

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKORMB

characteristic: title

text: not provided


COG-UK/PHWC-PKOEJB

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOEJB

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOEJB

text: not provided


COG-UK/PHWC-PKTGWK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKTGWK

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKTGWK

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKXIJZ

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKXIJZ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKXIJZ

characteristic: title

text: not provided


COG-UK/PHWC-PKTYWO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKTYWO

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKTYWO

text: not provided


COG-UK/PHWC-PKXIUN

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKXIUN

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKXIUN

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOGBU

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOGBU

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOGBU

characteristic: title

text: not provided


COG-UK/PHWC-PKOZHM

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOZHM

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOZHM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOXDG

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOXDG

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOXDG

characteristic: title

text: not provided


COG-UK/PHWC-PKOZXG

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOZXG

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOZXG

text: not provided


COG-UK/PHWC-PKOMPS

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOMPS

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOMPS

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTFXS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKTFXS

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTFXS

characteristic: title

text: not provided


COG-UK/PHWC-PKOZAU

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOZAU

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOZAU

text: not provided


COG-UK/PHWC-PKTNIC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKTNIC

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKTNIC

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOZCC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOZCC

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOZCC

characteristic: title

text: not provided


COG-UK/PHWC-PKTBZJ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKTBZJ

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKTBZJ

text: not provided


COG-UK/PHWC-PKOXXQ

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOXXQ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOXXQ

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOXNE

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOXNE

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOXNE

characteristic: title

text: not provided


COG-UK/PHWC-PKOBMR

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOBMR

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOBMR

text: not provided


COG-UK/PHWC-PKOGFM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOGFM

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOGFM

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKXSKW

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKXSKW

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKXSKW

characteristic: title

text: not provided


COG-UK/PHWC-PKXHKQ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKXHKQ

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKXHKQ

text: not provided


COG-UK/PHWC-PKOHTH

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOHTH

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOHTH

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOAHK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOAHK

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOAHK

characteristic: title

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: not provided


COG-UK/PHWC-PKOXTJ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOXTJ

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOXTJ

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOJBO

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOJBO

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOJBO

characteristic: title

text: not provided


COG-UK/PHWC-PKOAON

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOAON

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOAON

text: not provided


COG-UK/PHWC-PKOQCI

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOQCI

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKOQCI

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTYAE

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKTYAE

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTYAE

characteristic: title

text: not provided


COG-UK/PHWC-PKTDPH

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTDPH

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKTDPH

text: not provided


COG-UK/PHWC-PKXZQM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKXZQM

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKXZQM

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTRBU

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTRBU

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTRBU

characteristic: title

text: not provided


COG-UK/PHWC-PKOQYP

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOQYP

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOQYP

text: not provided


COG-UK/PHWC-PKTBNW

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTBNW

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKTBNW

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKOMZB

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKOMZB

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKOMZB

characteristic: title

text: not provided


COG-UK/PHWC-PKOIFH

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKOIFH

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/PHWC-PKOIFH

text: not provided


COG-UK/PHWC-PKXAZZ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COG-UK/PHWC-PKXAZZ

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/PHWC-PKXAZZ

text: not provided

characteristic: virus identifier


COG-UK/PHWC-PKTGTO

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/PHWC-PKTGTO

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/PHWC-PKTGTO

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

characteristic: collection date

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: synthetic metagenome

text: synthetic metagenome


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #M10_Baby collected at 0.96 years of age after FMT

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: weeks

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: infant born by C-Section receiving a FMT

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: collection date

text: Stool sample Infant #M10_Baby collected at 1 week of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

text: Stool sample Infant #M10_Baby collected at 3 months of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M10_Baby collected at 3 week of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample maternal #M10_Mother collected before delivery time

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: Pregnant Mother sample

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: Maternal stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M11_Baby collected at 0.90 years of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M11_Baby collected at 1 week of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M11_Baby collected at 3 months of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M11_Baby collected at 3 week of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample maternal #M11_Mother collected before delivery time

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: Pregnant Mother sample

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: Maternal stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M12_Baby collected at 0.88 years of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M12_Baby collected at 1 week of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M12_Baby collected at 3 months of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M12_Baby collected at 3 week of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample maternal #M12_Mother collected before delivery time

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: Pregnant Mother sample

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: Maternal stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M17_Baby collected at 1 week of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M17_Baby collected at 3 week of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample maternal #M17_Mother collected before delivery time

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: Pregnant Mother sample

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: Maternal stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M18_Baby collected at 0.76 years of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: infant born by C-Section receiving a FMT

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M18_Baby collected at 3 months of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M18_Baby collected at 1 week of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M18_Baby collected at 1.26 years of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M18_Baby collected at 3 week of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample maternal #M4_Mother collected before delivery time

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: Pregnant Mother sample

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: Maternal stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M6_Baby collected at 1 week of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

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text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M6_Baby collected at 1.21 years of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M6_Baby collected at 3 months of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

characteristic: host body product

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text: human-gut

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text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M6_Baby collected at 3 week of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

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text: metagenome

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characteristic: local environmental context

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample maternal #M6_Mother collected before delivery time

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: Pregnant Mother sample

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: Maternal stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M8_Baby collected at 1 week of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M8_Baby collected at 1.01 years of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample Infant #M8_Baby collected at 3 months of age after FMT

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: infant stool sample

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample Infant #M8_Baby collected at 3 week of age after FMT

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: infant stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample maternal #M8_Mother collected before delivery time

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (country and/or sea)

text: feces (UBERON:0001988)

text: human-gut

text: metagenome

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: Pregnant Mother sample

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: Maternal stool sample


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

tag: Namespace:Helsinki University Hospital and University of Helsinki

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: Finland

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Helsinki University Hospital and University of Helsinki

characteristic: INSDC center name

text: public

text: not provided

text: human

text: Finland

text: Homo sapiens

text: Homo sapiens


E-MTAB-13200:Sample 1

text: University of Ulm

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13200:Sample 1

tag: Namespace:University of Ulm

text: ArrayExpress

characteristic: broker name

text: neurologically unaffected

characteristic: clinical information

text: not collected

text: human

text: Protocols: Human peripheral blood monocytes were isolated from fresh peripheral blood drawn with EDTA anticoagulation. Monocytes were purified by magnetic-activated cell sorting (MACS) with magnetic microbeads conjugated to anti-CD14 antibodies (positive selection) as per manufacturer's instructions (Miltenyi). Monocytes were cultured in RPMI1640 with 10% FCS and 1% penicillin/streptomycin supplementation at 37 °C in 5% CO2 humidified atmosphere on 24-well polystyrene cell culture plates. Peripheral blood monocytes were stimulated with cell-culture grade (\"BioXtra\"), γ-irradiated lipopolysaccharides from Escherichia coli 0111:B4 (Sigma-Aldrich) dissolved in PBS to 1 µg/mL and diluted 1:1000 in cell-culture media to a final concentration of 1 ng/mL for 4 hours in technical duplicates. PBS was used as a vehicle control. 10^6 monocytes were lysed in situ with RLT+ buffer and genomic DNA contamination reduced with column-based genomic DNA removal as per suppliers' instructions (Qiagen). Total RNA was purified with the RNeasy Plus Kit as per manufacturer's instructions. Transcriptome libraries were prepared from 200 ng of total RNA with the TruSeq RNA Sample Preparation Kit v2, Set B (Illumina) as per supplier's instructions.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-13200:Sample 11

characteristic: ENA-LAST-UPDATE

text: University of Ulm

text: public

characteristic: SRA accession

text: E-MTAB-13200:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: neurologically unaffected

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 11


E-MTAB-13200:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Ulm

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13200:Sample 13

text: ArrayExpress

text: neurologically unaffected

text: not collected

text: human

text: adult

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 13

characteristic: title


E-MTAB-13200:Sample 15

text: University of Ulm

text: public

characteristic: INSDC status

text: E-MTAB-13200:Sample 15

text: ArrayExpress

characteristic: broker name

text: neurologically unaffected

characteristic: clinical information

text: not collected

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 15


E-MTAB-13200:Sample 3

characteristic: ENA-LAST-UPDATE

text: University of Ulm

text: public

characteristic: SRA accession

text: E-MTAB-13200:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: neurologically unaffected

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 3


E-MTAB-13200:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Ulm

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13200:Sample 5

text: ArrayExpress

text: neurologically unaffected

text: not collected

text: human

characteristic: description

text: adult

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 5


E-MTAB-13200:Sample 7

text: University of Ulm

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13200:Sample 7

text: ArrayExpress

characteristic: broker name

text: neurologically unaffected

characteristic: clinical information

text: not collected

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 7

characteristic: title


E-MTAB-13200:Sample 9

characteristic: ENA-LAST-UPDATE

text: University of Ulm

text: public

characteristic: SRA accession

text: E-MTAB-13200:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: neurologically unaffected

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 9


E-MTAB-13200:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Ulm

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13200:Sample 10

text: ArrayExpress

text: neurologically unaffected

text: not collected

text: human

text: adult

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 10


E-MTAB-13200:Sample 12

text: University of Ulm

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13200:Sample 12

text: ArrayExpress

characteristic: broker name

text: neurologically unaffected

characteristic: clinical information

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 12


E-MTAB-13200:Sample 14

characteristic: ENA-LAST-UPDATE

text: University of Ulm

text: public

characteristic: SRA accession

text: E-MTAB-13200:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: neurologically unaffected

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 14

characteristic: title


E-MTAB-13200:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Ulm

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13200:Sample 16

text: ArrayExpress

text: neurologically unaffected

text: not collected

text: human

text: adult

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 16


E-MTAB-13200:Sample 2

text: University of Ulm

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13200:Sample 2

text: ArrayExpress

characteristic: broker name

text: neurologically unaffected

characteristic: clinical information

text: not collected

text: human

characteristic: description

text: adult

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 2


E-MTAB-13200:Sample 4

characteristic: ENA-LAST-UPDATE

text: University of Ulm

text: public

characteristic: SRA accession

text: E-MTAB-13200:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: neurologically unaffected

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 4


E-MTAB-13200:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Ulm

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13200:Sample 6

text: ArrayExpress

text: neurologically unaffected

text: not collected

text: human

text: adult

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 6

characteristic: title


E-MTAB-13200:Sample 8

text: University of Ulm

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13200:Sample 8

text: ArrayExpress

characteristic: broker name

text: neurologically unaffected

characteristic: clinical information

text: not collected

text: human

characteristic: description

text: adult

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 8