characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Panagrellus redivivus

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Panagrellus redivivus

text: NOT APPLICABLE

text: NOT PROVIDED

text: N

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collecting institution

text: USA

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

text: MINNESOTA | MINNEAPOLIS

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

characteristic: lifestage

text: Caenorhabditis angaria

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Caenorhabditis angaria

text: NOT APPLICABLE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Choriorhabditis dudichi

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Choriorhabditis dudichi

text: NOT APPLICABLE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collecting institution

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: MINNESOTA | MINNEAPOLIS

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Rhabditella axei

text: WHOLE ORGANISM

characteristic: sample same as

text: Rhabditella axei

text: NOT APPLICABLE

text: NOT PROVIDED

text: N


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

text: USA

text: not collected

text: not collected

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

characteristic: lifestage

text: Rhabditis blumi

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Rhabditis blumi

text: NOT APPLICABLE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Rhomborhabditis regina

characteristic: organism

text: WHOLE ORGANISM

text: Rhomborhabditis regina

text: NOT APPLICABLE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collecting institution

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: MINNESOTA | MINNEAPOLIS

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

characteristic: lifestage

text: Teratorhabditis palmarum

text: WHOLE ORGANISM

characteristic: sample same as

text: Teratorhabditis palmarum

text: NOT APPLICABLE

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

text: USA

text: not collected

text: not collected

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Pelodera strongyloides

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Pelodera strongyloides

text: NOT APPLICABLE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Caenorhabditis sp. DF5070

characteristic: organism

text: WHOLE ORGANISM

text: Caenorhabditis sp. DF5070

text: NOT APPLICABLE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: MINNESOTA | MINNEAPOLIS

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

characteristic: lifestage

text: Pelodera teres

text: WHOLE ORGANISM

characteristic: sample same as

text: Pelodera teres

text: NOT APPLICABLE

text: NOT PROVIDED

text: N


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collecting institution

text: USA

text: not collected

text: not collected

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Caenorhabditis wallacei

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Caenorhabditis wallacei

text: NOT APPLICABLE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Caenorhabditis nouraguensis

characteristic: organism

text: WHOLE ORGANISM

text: Caenorhabditis nouraguensis

text: NOT APPLICABLE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collecting institution

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: MINNESOTA | MINNEAPOLIS

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

characteristic: lifestage

text: Caenorhabditis quiockensis

text: WHOLE ORGANISM

characteristic: sample same as

text: Caenorhabditis quiockensis

text: NOT APPLICABLE

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

text: USA

text: not collected

text: not collected

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Panagrellus redivivus

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Panagrellus redivivus

text: NOT APPLICABLE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: MINNESOTA | MINNEAPOLIS

text: NOT COLLECTED

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

text: Caenorhabditis angaria

characteristic: organism

text: WHOLE ORGANISM

text: Caenorhabditis angaria

text: NOT APPLICABLE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT COLLECTED

text: NOT COLLECTED

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: MINNESOTA | MINNEAPOLIS

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: NOT COLLECTED

text: NOT COLLECTED

text: not applicable

characteristic: lifestage

text: Choriorhabditis dudichi

text: WHOLE ORGANISM

characteristic: sample same as

text: Choriorhabditis dudichi

text: NOT APPLICABLE

text: NOT PROVIDED

text: N


characteristic: External Id

text: Institute of Microbiology, ETH Zurich

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institute of Microbiology, ETH Zurich

text: TnSeq (mapping) data for SL1344 mutant library

characteristic: description

text: Switzerland

text: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

text: library_11_1_FKDL202598974-1a-D701-AK1682_HHG5YDSXY_L4


text: public

tag: Namespace:San Raffaele Telethon Institute for Gene Therapy

characteristic: collection date

text: human

characteristic: common name

text: BE4max optimized

text: Italy

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: San Raffaele Telethon Institute for Gene Therapy

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: human

text: ABE8.20-m optimized

text: Italy

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: Submitter Id

text: human

text: BE4max standard

text: Italy

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Mock electro

text: Italy

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Mock electro vitro

text: Italy

text: Homo sapiens

text: Homo sapiens


text: Georgia State University

text: public

tag: Namespace:Georgia State University

text: house mouse

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Foundation for Research and Technology Hellas (FORTH)

characteristic: collection date

text: non-infected WT N.benthamiana sample

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Nicotiana benthamiana

characteristic: organism

text: Nicotiana benthamiana

text: Non Infected Sample 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Foundation for Research and Technology Hellas (FORTH)

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: non-infected WT N.benthamiana sample

text: Greece

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: Non Infected Sample 2

characteristic: title


text: public

text: non-infected WT N.benthamiana sample

text: Greece

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: Non Infected Sample 3


text: public

text: non-infected WT N.benthamiana sample

text: Greece

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: Non Infected Sample 4


text: public

text: PSTVd infected WT N. benthamiana sample

text: Greece

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: PSTVd Infected Sample 1


text: public

text: PSTVd infected WT N. benthamiana sample

text: Greece

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: PSTVd Infected Sample 2


text: public

text: PSTVd infected WT N. benthamiana sample

text: Greece

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: PSTVd Infected Sample 3


text: public

text: PSTVd infected WT N. benthamiana sample

text: Greece

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: PSTVd Infected Sample 4


text: WEIZMANN INSTITUE OF SCIENCE

text: public

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

text: Microbiome

characteristic: broad-scale environmental context

text: house mouse

characteristic: common name

text: FD 3 days

text: Microbiome

characteristic: environmental medium

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Microbiome

characteristic: local environmental context

text: Mus musculus

text: Short-term dietary changes lead to windows of mucosal and systemic immune depression

characteristic: project name

text: Mus musculus


characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Microbiome

characteristic: collection date

text: house mouse

text: FD 12 days

characteristic: description

text: Microbiome

text: Germany

text: Microbiome

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

text: public

text: Microbiome

text: house mouse

text: FD+RD

text: Microbiome

text: Germany

characteristic: geographic location (country and/or sea)

text: Microbiome

text: Mus musculus

characteristic: organism

text: Mus musculus


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Microbiome

characteristic: broad-scale environmental context

text: house mouse

characteristic: common name

text: FD+RD+FD

text: Microbiome

characteristic: environmental medium

text: Germany

text: Microbiome

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC first public

text: public

text: Microbiome

text: house mouse

text: RD only

text: Microbiome

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Microbiome

characteristic: local environmental context

text: Mus musculus

characteristic: project name

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Microbiome

characteristic: collection date

text: house mouse

text: FD+RD+FD+RD

characteristic: description

text: Microbiome

text: Germany

text: Microbiome

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: University of Strasbourg

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:University of Strasbourg

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HUVEC cell

text: not collected

text: human

text: Protocols: HUVECs cultured in static or flow conditions and treated with 1.109 EVs or PBS for 24h Total RNA was extracted using RNeasy Mini Kit (Qiagen, Hilden, Germany) and RNA integrity was assessed by Bioanalyzer (total RNA Pico Kit, 2100 Instrument, Agilent Technologies, Paolo Alto, USA) SMART-Seq® HT PLUS Kit (Takara, Kusatsu, Japan) was used to build mRNA libraries.

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: umbilical vein endothelium

characteristic: organism part

text: Homo sapiens

text: flow

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Strasbourg

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HUVEC cell

text: not collected

text: human

characteristic: common name

text: embryo

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: umbilical vein endothelium

text: Homo sapiens

text: static

characteristic: title


characteristic: ENA-LAST-UPDATE

text: ETH-Zurich

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: description

text: Switzerland

text: chicken gut metagenome

text: chicken gut metagenome


text: ETH-Zurich

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 100 mM_Gly_pretreatment

text: Switzerland

characteristic: geographic location (country and/or sea)

text: chicken gut metagenome

text: chicken gut metagenome

text: F1_100 mM_Gly_pretreatment


text: ETH-Zurich

text: public

text: 50 MM_Gly_pretreatment

text: Switzerland

text: chicken gut metagenome

characteristic: organism

text: chicken gut metagenome

text: F1_50 MM_Gly_pretreatment


text: ETH-Zurich

text: public

text: 100 mM_Gly_treatment

text: Switzerland

text: chicken gut metagenome

text: chicken gut metagenome

text: F1_100 mM_Gly_treatment


text: ETH-Zurich

text: public

text: 50 MM_Gly_treatment

text: Switzerland

text: chicken gut metagenome

text: chicken gut metagenome

text: F1_50 MM_Gly_treatment


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Nicol Rueda, Eva van der Heijden

text: PhD student

characteristic: collecting institution

unit: m

characteristic: elevation

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Valle del Cauca | Playa Dorada, Maguipi-Vll Cauca

characteristic: geographic location (region and locality)

text: Tropical rainforest

characteristic: habitat

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

characteristic: lifestage

text: Heliconius sapho

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Heliconius sapho

text: FEMALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Nicol Rueda, Eva van der Heijden

text: PhD student

characteristic: collection date

text: Colombia

text: Tropical rainforest

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

text: Heliconius sapho

text: WHOLE ORGANISM

text: ToL

text: Heliconius sapho

text: MALE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: Submitter Id

text: Nicol Rueda, Eva van der Heijden

text: PhD student

characteristic: collecting institution

characteristic: elevation

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Leticia | Arara-Amazonas

characteristic: geographic location (region and locality)

text: Tropical rainforest

characteristic: habitat

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

characteristic: lifestage

text: Heliconius antiochus

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Heliconius antiochus

text: MALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Nicol Rueda, Eva van der Heijden

text: PhD student

text: Colombia

text: Leticia | Arara-Amazonas

text: Tropical rainforest

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

text: Heliconius antiochus

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Heliconius antiochus

text: FEMALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Nicol Rueda, Eva van der Heijden

text: PhD student

characteristic: collecting institution

characteristic: collection date

characteristic: elevation

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Tropical rainforest

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

text: Heliconius sapho

text: WHOLE ORGANISM

characteristic: sample same as

text: Heliconius sapho

text: FEMALE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Nicol Rueda, Eva van der Heijden

text: PhD student

text: Colombia

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Tropical rainforest

characteristic: habitat

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

characteristic: lifestage

text: Heliconius sapho

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: Heliconius sapho

text: MALE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Nicol Rueda, Eva van der Heijden

text: PhD student

characteristic: collecting institution

characteristic: collection date

characteristic: elevation

text: Colombia

text: Leticia | Arara-Amazonas

text: Tropical rainforest

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

text: Heliconius antiochus

text: WHOLE ORGANISM

characteristic: project name

text: Heliconius antiochus

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Nicol Rueda, Eva van der Heijden

text: PhD student

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Leticia | Arara-Amazonas

characteristic: geographic location (region and locality)

text: Tropical rainforest

text: Nicol Rueda

text: Universidad del Rosario, Colombia

text: adult

text: Heliconius antiochus

text: WHOLE ORGANISM

characteristic: sample same as

text: Heliconius antiochus

text: FEMALE

text: N

characteristic: title


text: Institute of Microbiology, ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Switzerland

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Microbiology, ETH Zurich

text: public

text: Switzerland

text: blank sample

text: blank sample


characteristic: External Id

text: Institute of Microbiology, ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 082_Pos1_1_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: Switzerland

characteristic: geographic location (country and/or sea)

text: blank sample

text: blank sample

text: NTC


text: Institute of Microbiology, ETH Zurich

text: public

text: 084_Pos1_2_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 085_Pos1_3_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 159_Pos2_1_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 161_Pos2_2_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 162_Pos2_3_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 206_Pos3_1_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 216_Pos3_2_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 243_Pos3_3_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: 244_Pos3_4_ZymoBIOMICS_Microbial_Community

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: SC

text: public

text: SC

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

characteristic: geographic location (country and/or sea)

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Stool

text: Vibrio cholerae

text: Vibrio cholerae

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Vibrio cholerae

text: Vibrio cholerae


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Rectal swab

text: Vibrio cholerae

text: Vibrio cholerae


text: UNIVERSITY OF MELBOURNE

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF MELBOURNE

characteristic: Submitter Id

text: United Kingdom

text: human gut metagenome

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

characteristic: collection date

text: Kazakhstan

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: human gastric microbiota


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MELBOURNE

text: public

text: USA

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota

characteristic: title


characteristic: External Id

text: UNIVERSITY OF MELBOURNE

characteristic: INSDC center name

text: public

text: China

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

characteristic: INSDC first public

text: public

text: India

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Denmark

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Madagascar

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Canada

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Italy

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Germany

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Japan

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Austria

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Cameroon

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

text: Sweden

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: public

tag: Namespace:RADBOUD UNIVERSITY, Department Microbiology

text: urban

characteristic: broad-scale environmental context

text: alluvial sediment

characteristic: environmental medium

text: Netherlands

text: canal

characteristic: local environmental context

text: freshwater sediment metagenome

text: Arch349F (5 - GYGCASCAGKCGMGAAW - 3); Arch806R (5 - GGACTACVSGGGTATCTAAT - 3)

characteristic: pcr primers

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

text: Graphene oxide enrichment 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RADBOUD UNIVERSITY, Department Microbiology

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Graphene oxide enrichment 2


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban

characteristic: collection date

text: alluvial sediment

text: Netherlands

text: canal

text: freshwater sediment metagenome

text: Bac341F (5 - CCTACGGGNGGCWGCAG - 3); Bac806R (5 - GGACTACHVGGGTWTCTAAT-3);

text: freshwater sediment metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: Methanotroph enrichment Amst2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: urban

text: alluvial sediment

text: Netherlands

text: ditch

text: freshwater sediment metagenome

characteristic: organism

text: freshwater sediment metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Methanotroph enrichment Amst5

characteristic: title


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF BERGEN

characteristic: depth

text: Control_BBM medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome Chlorella vulgaris

characteristic: project name

unit: l

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Control_AC medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

characteristic: title


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Control_AC+ medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Control_CF medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Control_CF+ medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chlorella vulgaris strain Agf-ext-435_BBM medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

text: unidentified prokaryotic organism

text: MiSeq


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Chlorella vulgaris strain Agf-ext-435_AC medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chlorella vulgaris strain Agf-ext-435_AC+ medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

characteristic: geographic location (latitude)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

characteristic: title


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Chlorella vulgaris strain Agf-ext-435_CF medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chlorella vulgaris strain Agf-ext-435_CF+ medium_300ml Multicultivator batch culture experiment_time point start_biological replicate 1

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

characteristic: geographic location (latitude)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Chlorella vulgaris strain Agf-ext-435_BBM medium_300ml Multicultivator batch culture experiment_time point day 5_biological replicate 1

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chlorella vulgaris strain Agf-ext-435_BBM medium_300ml Multicultivator batch culture experiment_time point day 5_biological replicate 2

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

text: unidentified prokaryotic organism

text: MiSeq


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Chlorella vulgaris strain Agf-ext-435_BBM medium_300ml Multicultivator batch culture experiment_time point day 5_biological replicate 3

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chlorella vulgaris strain Agf-ext-435_AC medium_300ml Multicultivator batch culture experiment_time point day 5_biological replicate 1

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

characteristic: geographic location (latitude)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

characteristic: title


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Chlorella vulgaris strain Agf-ext-435_AC medium_300ml Multicultivator batch culture experiment_time point day 5_biological replicate 2

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chlorella vulgaris strain Agf-ext-435_AC medium_300ml Multicultivator batch culture experiment_time point day 5_biological replicate 3

text: Laboratory

text: Laboratory

text: Water

text: Water

text: Norway

characteristic: geographic location (latitude)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: Chlorella vulgaris strain Agf-ext-435_AC+ medium_300ml Multicultivator batch culture experiment_time point day 5_biological replicate 1

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

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tag: Namespace:Karolinska Institutet

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characteristic: organism

text: Mus musculus

text: male

text: 3 days


text: Karolinska Institutet

characteristic: INSDC first public

text: public

text: macrophages

text: house mouse

characteristic: common name

text: Hippocampal infiltrating macrophages age P10, 1 day after hypoxia

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

text: Mus musculus

text: Mus musculus

text: female

text: 1 day


text: Karolinska Institutet

text: public

text: macrophages

text: house mouse

text: Sweden

text: yes

characteristic: hypoxia

text: Mus musculus

characteristic: pup id

text: Mus musculus

text: male

characteristic: sex

text: 1 day

characteristic: time after hypoxia (or age-matching, for control)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Karolinska Institutet

text: public

text: macrophages

text: house mouse

text: Hippocampal infiltrating macrophages age P12, 3 days after hypoxia

text: Sweden

text: yes

text: Mus musculus

text: Mus musculus

text: female

text: 3 days

characteristic: title


characteristic: External Id

text: Karolinska Institutet

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: macrophages

text: house mouse

text: Sweden

text: yes

text: Mus musculus

text: Mus musculus

text: male

text: 3 days


characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collection date

text: Herpes simplex virus type 1

text: Amplicon

text: France

text: Human alphaherpesvirus 1

characteristic: organism

text: Human alphaherpesvirus 1


characteristic: INSDC first public

text: public

text: Amplicon

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Human alphaherpesvirus 2

text: Human alphaherpesvirus 2


text: UNIVERSITY OF VIENNA

text: public

tag: Namespace:UNIVERSITY OF VIENNA

text: human

characteristic: common name

text: Ancient human genome

text: Austria

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF VIENNA

text: public

text: human

text: Ancient human genome

text: Slovakia

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF VIENNA

text: public

text: human

text: Ancient human genome

text: Hungary

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF VIENNA

text: public

text: human

text: Ancient human genome

text: Romania

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF VIENNA

text: public

text: human

text: Ancient human genome

text: Serbia

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF VIENNA

text: public

text: human

text: Ancient human genome

text: Croatia

text: Homo sapiens

text: Homo sapiens


text: Erasmus MC Cancer Institute

text: public

tag: Namespace:Erasmus MC Cancer Institute

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: natural killer cell

text: not collected

text: human

text: Protocols: BM aspirates from patients with newly diagnosed MM were collected at the Erasmus Medical Centre (Rotterdam, the Netherlands) as part of inclusion into Dutch-Belgian Cooperative Trial Group for Hematology Oncology (HOVON) trials or European Myeloma Network (EMN) trials. The protocols were approved by the Institutional Review Board of the Erasmus Medical Centre (Rotterdam, The Netherlands). Patient samples were obtained after informed consent, in accordance with the Declaration of Helsinki. Control BM was obtained by sternal aspiration from donors undergoing cardiothoracic surgery or by manual BM collection from femur heads collected after hip replacement surgery. Bone marrow mononuclear cells (BMMCs) were isolated by density gradient centrifugation using Histopaque (Sigma-Aldrich) and subsequent plasma cell isolation was performed using magnetic CD138+ bead enrichment (Stemcell). Plasma cells, pre-isolation fractions and plasma-cell depleted fractions were viably cryopreserved in 10% dimethyl sulfoxide (DMSO, Sigma-Aldrich). The 10X Chromium Single cell 3’ reagent Kit v3 (10X Genomics) was used for construction of single-cell transcriptomic libraries. Reverse transcription, cDNA amplification, and library preparation were all performed according to the manufacturer’s instructions. Cryopreserved bone marrow aspirates from 6 NDMM, 21 post-therapy and 6 RRMM patients were thawed and sorted into CD45+CD38−CD34−CD235a−CD71− and CD45+CD38+CD34−CD235a−CD71− immune fractions and processed for single-cell RNA sequencing according to the 10X Genomics protocol as previously described. This dataset was supplemented with data from 5 controls and 13 additional NDMM patients that were previously generated in our lab (De Jong et al. Nature Immunology 2021), resulting in a total single-cell dataset of 51 individuals, including 19 NDMM patients and 6 RRMM patients. As the majority of NK cells are CD38+and CD38high NK cells have increased cytotoxic function against cancer cells, CD38+ NK cells were identified in silico by transcription of KLRF1, KLRD1, GNLY and NKG7 as previously described (Yang et al. Nature Communications 2019).

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Erasmus MC Cancer Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: natural killer cell

text: not collected

text: human

text: adult

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male

characteristic: title


text: Erasmus MC Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: natural killer cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: multiple myeloma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: female


text: Erasmus MC Cancer Institute

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: natural killer cell

text: not collected

text: human

text: adult

characteristic: developmental stage

text: multiple myeloma

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


INF+TOP

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Glasgow

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: INF+TOP

tag: Namespace:University of Glasgow

text: Samples of biofilter communities collected at the end of batch experiment

text: United Kingdom

text: biofilter metagenome

text: biofilter metagenome

text: INF+TOP

characteristic: title


INF+MID

text: University of Glasgow

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: INF+MID

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: biofilter metagenome

characteristic: organism

text: biofilter metagenome

text: INF+MID


INF+BOT

text: University of Glasgow

text: public

text: INF+BOT

text: United Kingdom

text: biofilter metagenome

text: biofilter metagenome

text: INF+BOT


E-MTAB-13158:Sample 1

text: RI

text: public

text: E-MTAB-13158:Sample 1

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: German honeybee

characteristic: common name

text: Protocols: Honey bees are holometabolous and worker prepupae at day 11 (S1) and pupae at day 15 (S2) were chosen for this study in order to capture the key developmental stages between capping of the larval cell (day 9) and the emergence of the imago on day 21 (Oertal, 1930) (Figure 1A). To gather samples, a piece of brood comb containing appropriately staged pupae was collected from a single honey bee colony at the Easter Bush Campus apiary in August 2018. Pupae were removed from the comb and placed in microcentrifuge tubes on ice. Each pupa was placed in 0.5 ml HyQTase (GE Healthcare, Chicago, Illinois, USA), finely chopped with small spring scissors for one minute and incubated for 5 min at 25°C. Samples of each stage were centrifuged at 400 RCF for 5 minutes at 4°C. Cell pellets were resuspended in 1 ml WH2 medium by drawing liquid into and out of pipette tip fifteen times (Goblirsch et al., 2013). Samples (n = 4 per stage) were pooled (total volume 4ml), and the cells passed into a 5ml tube through a 70 μm strainer cap (Becton, Dickinson and Company, New Jersey, USA) to remove debris and aggregated cells. Following centrifugation of the filtered cells at 400 RCF for 5 minutes at 4°C, the supernatant was discarded and the cells resuspended in 2ml WH2 medium. After further centrifugation at 400 RCF for 5 min at 4°C, cells were resuspended in 1 ml WH2 medium and stained with 1:2,000 Sytox Red (Thermo Fisher, Waltham, Massachusetts) for downstream cell viability analysis during cell sorting. Gating strategies sorted cells on the basis of their size (forwards vs side scatter area to exclude debris), single cells (forward scatter area vs height to exclude doublet cells) and viability using a 633nm laser and 660/20 band pass emission filter on an Aria IIIu FACS (Becton, Dickinson and Company, New Jersey, USA (Figure 1B and C). Before sequencing the cells were counted and tested again for viability using a TC20 automated cell counter (Bio-Rad, Hercules, California, USA). Approximately 7,000 cells at each stage were used for cDNA library preparation using the Chromium platform v2.0 (10X Genomics, Pleasanton, California, USA), as per the manufacturer’s instructions. Library quality was confirmed with a LabChip Gx24 bioanalyzer (PerkinElmer, Waltham, Massachusetts, USA). Approximately 7,000 cells at each stage were used for cDNA library preparation using the Chromium platform v2.0 (10X Genomics, Pleasanton, California, USA), as per the manufacturer’s instructions. Library quality was confirmed with a LabChip Gx24 bioanalyzer (PerkinElmer, Waltham, Massachusetts, USA).

text: stage 1 prepupa

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Apis mellifera mellifera

text: Apis mellifera mellifera

text: whole organism

characteristic: organism part

text: Apis mellifera mellifera

text: female

text: Sample 1


E-MTAB-13158:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13158:Sample 2

text: ArrayExpress

text: not collected

text: German honeybee

text: stage 2 pupa

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Apis mellifera mellifera

text: Apis mellifera mellifera

text: whole organism

text: Apis mellifera mellifera

text: female

characteristic: sex

text: Sample 2


text: NIPH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: collection date

text: N. meningitidis

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: blood

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIPH

text: public

text: ELIXIR-Norway

characteristic: broker name

text: N. meningitidis

characteristic: common name

text: Norway

text: not provided

text: Homo sapiens

characteristic: isolate

text: joint fluid

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pre

text: USA

characteristic: country

text: fecal sample AB.TP1

text: gel and pellet

characteristic: diet

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associatedhabitat

text: feces

text: host-associated

text: USA:CA:SanDiego

text: USA

text: apparently healthy

text: Callithrix jacchus

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: marmoset

text: not provided

text: g

text: UCSD

characteristic: latitude

text: adult

characteristic: longitude

characteristic: medication

text: primate metagenome

text: UCSDMI

text: FALSE

text: feces

text: primate metagenome

text: not applicable

text: MF

text: EliottField

characteristic: site

text: lights on to noon(ZT0-ZT6)

text: Marmoset Diet Change-ACP Resident Project


characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Post

text: USA

text: fecal sample AB.TP10

characteristic: description

text: gel

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associatedhabitat

text: feces

text: host-associated

text: USA:CA:SanDiego

text: USA

characteristic: geographic location (country and/or sea)

text: apparently healthy

text: Callithrix jacchus

characteristic: host scientific name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: marmoset

text: not provided

text: g

text: UCSD

text: adult

text: primate metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: feces

text: primate metagenome

text: not applicable

characteristic: sex

text: MF

text: EliottField

text: lights on to noon(ZT0-ZT6)

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Post

text: USA

characteristic: country

text: fecal sample AB.TP11

text: gel

characteristic: diet

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associatedhabitat

text: feces

text: host-associated

text: USA:CA:SanDiego

text: USA

text: apparently healthy

text: Callithrix jacchus

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: marmoset

text: not provided

text: g

text: UCSD

text: adult

text: primate metagenome

text: UCSDMI

text: FALSE

text: feces

text: primate metagenome

text: not applicable

text: MF

text: EliottField

text: lights on to noon(ZT0-ZT6)


characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Pre

text: USA

text: fecal sample AB.TP2

text: gel and pellet

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associatedhabitat

text: feces

text: host-associated

text: USA:CA:SanDiego

text: USA

text: apparently healthy

text: Callithrix jacchus

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: marmoset

text: not provided

text: g

text: UCSD

characteristic: latitude

text: adult

characteristic: longitude

characteristic: medication

text: primate metagenome

text: UCSDMI

text: FALSE

text: feces

text: primate metagenome

text: not applicable

text: MF

text: EliottField

characteristic: site

text: lights on to noon(ZT0-ZT6)