E-MTAB-13168:Sample 629

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 629

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 629


E-MTAB-13168:Sample 63

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 63

tag: Namespace:EC Joint Research Centre

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: After chemical exposure, hepatocytes of the HepaRG cell line were washed with PBS and lysed with TempO-Seq lysis buffer (TempO-Seq lysis buffer 2x diluted to 1x with PBS, BioSpyder Technologies, proprietary kit). Following cell lysis, the samples were frozen at -80° and shipped for analysis on dry ice. HepaRG were provided by Biopredic International (Rennes, France) in cryopreserved vials. Cells were maintained into 150 cm2 flasks for two weeks in culture medium consisting of William’s MediumE (Thermo Fisher Scientific, Melegnano, Italy) with 10% FBS (HyClone Fetal- Clone III, HyClone), 1% l-glutamine, 1% penicillin/streptomycin, 5 μg/ml bovine insulin and 50 μM hydrocortisone (all from Sigma, Milan, Italy). The cells were then cultured in differentiation medium, which consists of maintenance medium plus 1.7% DMSO (starting with 0.85% DMSO for 1 day) for 2 weeks. Subsequently, the hepatocytes were selectively trypsinised and detached, whereas the biliary cells remained adhered to the plate. The hepatocytes were finally transferred into clear bottom black polystyrene 96-well plates (5 × 104 cells/well in 100 μL) to undergo chemical treatment. The cells were treated in 9 replicates (3 biological and 3 technical replicates) with 8 concentrations of each chemical individually, diluted in cell media with the final concentration of DMSO corresponding to 0.1%. The chemical concentrations were: • Aflatoxin B1 (Cas No. 1162-65-8, purity ≥ 99.2%, Sigma), benzo[a]pyrene (Cas No. 50-32-8, purity ≥ 99.0%, Sigma), cyclosporine A (CAS No. 59865-13-3, purity > 99.9%, Sigma), trichostatin A (Cas No. 58880-19-6, purity > 98%, Sigma): 0.08192, 0.2048, 0.512, 1.28, 3.2, 8, 20 and 50 µM • Rotenone (CAS No. 83-79-4, purity > 95.9%, Sigma): 0.016384, 0.04096, 0.1024, 0.256, 0.64, 1.6, 4 and 10 µM Following the chemical treatment, the samples were incubated for 2, 6, 12, 24 or 48 h. The study included vehicle controls and quality controls (MAQC). All the procedures for cell seeding, serial dilution of chemical and cell treatment were fully automated using the robotic liquid handlers Hamilton Star and Starlet platforms (Hamilton Italia Srl, Agrate Brianza, Italy). No nucleic acid extraction was performed Biospyder probe manifest Homo sapiens whole genome ver 1.2 was used (file: 180905Human_Whole_Transcriptome_1.2Manifest.txt). A standard attenuation was applied (file 190220 Human Whole Transcriptome 1.2 Attenuation.txt)

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 63

characteristic: title


E-MTAB-13168:Sample 630

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 630

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 630


E-MTAB-13168:Sample 631

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 631

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 631


E-MTAB-13168:Sample 632

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 632

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 632


E-MTAB-13168:Sample 633

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 633

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 633


E-MTAB-13168:Sample 634

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 634

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 634

characteristic: title


E-MTAB-13168:Sample 635

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 635

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 635


E-MTAB-13168:Sample 636

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 636

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 636


E-MTAB-13168:Sample 637

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 637

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 637


E-MTAB-13168:Sample 638

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 638

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 638


E-MTAB-13168:Sample 639

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 639

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 639

characteristic: title


E-MTAB-13168:Sample 64

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 64

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 64


E-MTAB-13168:Sample 640

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 640

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 640


E-MTAB-13168:Sample 641

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 641

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 641


E-MTAB-13168:Sample 642

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 642

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 642


E-MTAB-13168:Sample 643

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 643

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 643

characteristic: title


E-MTAB-13168:Sample 644

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 644

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 644


E-MTAB-13168:Sample 645

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 645

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 645


E-MTAB-13168:Sample 646

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 646

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 646


E-MTAB-13168:Sample 647

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 647

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 647


E-MTAB-13168:Sample 648

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 648

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 648

characteristic: title


E-MTAB-13168:Sample 649

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 649

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 649


E-MTAB-13168:Sample 65

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 65

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 65


E-MTAB-13168:Sample 650

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 650

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 650


E-MTAB-13168:Sample 651

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 651

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 651


E-MTAB-13168:Sample 652

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 652

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 652

characteristic: title


E-MTAB-13168:Sample 653

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 653

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 653


E-MTAB-13168:Sample 654

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 654

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 654


E-MTAB-13168:Sample 655

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 655

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 655


E-MTAB-13168:Sample 656

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 656

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 656


E-MTAB-13168:Sample 657

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 657

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 657

characteristic: title


E-MTAB-13168:Sample 658

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 658

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 658


E-MTAB-13168:Sample 659

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 659

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 659


E-MTAB-13168:Sample 66

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 66

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 66


E-MTAB-13168:Sample 660

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 660

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 660


E-MTAB-13168:Sample 661

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 661

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 661

characteristic: title


E-MTAB-13168:Sample 662

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 662

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 662


E-MTAB-13168:Sample 663

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 663

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 663


E-MTAB-13168:Sample 664

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 664

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 664


E-MTAB-13168:Sample 665

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 665

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 665


E-MTAB-13168:Sample 666

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 666

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 666

characteristic: title


E-MTAB-13168:Sample 667

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 667

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 667


E-MTAB-13168:Sample 668

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 668

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 668


E-MTAB-13168:Sample 669

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 669

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 669


E-MTAB-13168:Sample 67

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 67

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 67


E-MTAB-13168:Sample 670

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 670

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 670

characteristic: title


E-MTAB-13168:Sample 671

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 671

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 671


E-MTAB-13168:Sample 672

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 672

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 672


E-MTAB-13168:Sample 673

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 673

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 673


E-MTAB-13168:Sample 674

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 674

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 674


E-MTAB-13168:Sample 675

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 675

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 675

characteristic: title


E-MTAB-13168:Sample 68

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 68

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 68


E-MTAB-13168:Sample 69

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 69

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 69


E-MTAB-13168:Sample 7

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 7

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 7


E-MTAB-13168:Sample 70

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 70

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 70


E-MTAB-13168:Sample 71

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 71

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 71

characteristic: title


E-MTAB-13168:Sample 72

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 72

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 72


E-MTAB-13168:Sample 73

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 73

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 73


E-MTAB-13168:Sample 74

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 74

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 74


E-MTAB-13168:Sample 75

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 75

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 75


E-MTAB-13168:Sample 76

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 76

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 76

characteristic: title


E-MTAB-13168:Sample 77

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 77

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 77


E-MTAB-13168:Sample 78

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 78

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 78


E-MTAB-13168:Sample 79

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 79

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 79


E-MTAB-13168:Sample 8

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 8

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 8


E-MTAB-13168:Sample 80

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 80

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 80

characteristic: title


E-MTAB-13168:Sample 81

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 81

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 81


E-MTAB-13168:Sample 82

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 82

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 82


E-MTAB-13168:Sample 83

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 83

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 83


E-MTAB-13168:Sample 84

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 84

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 84


E-MTAB-13168:Sample 85

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 85

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 85

characteristic: title


E-MTAB-13168:Sample 86

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 86

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 86


E-MTAB-13168:Sample 87

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 87

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 87


E-MTAB-13168:Sample 88

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 88

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 88


E-MTAB-13168:Sample 89

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 89

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 89


E-MTAB-13168:Sample 9

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 9

characteristic: title


E-MTAB-13168:Sample 90

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 90

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 90


E-MTAB-13168:Sample 91

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 91

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 91


E-MTAB-13168:Sample 92

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 92

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 92


E-MTAB-13168:Sample 93

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 93

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 93


E-MTAB-13168:Sample 94

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 94

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 94

characteristic: title


E-MTAB-13168:Sample 95

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 95

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: Sample 95


E-MTAB-13168:Sample 96

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 96

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 96


E-MTAB-13168:Sample 97

text: EC Joint Research Centre

text: public

characteristic: SRA accession

text: E-MTAB-13168:Sample 97

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 97


E-MTAB-13168:Sample 98

text: EC Joint Research Centre

text: public

text: E-MTAB-13168:Sample 98

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: replicate

text: Homo sapiens

text: Sample 98


E-MTAB-13168:Sample 99

text: EC Joint Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13168:Sample 99

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: not collected

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 99

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2


text: University clinic Duesseldorf

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collection date

text: not collected

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dalhousie University

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Tree of Life Programme

text: DARIA TASHYREVA

text: INSTITUTE OF PARASITOLOGY, BIOLOGY CENTRE

text: Czech Republic

text: not provided

unit: DD

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: BIOLOGY CENTRE

text: LABORATORY

characteristic: habitat

text: DARIA TASHYREVA

text: not collected

characteristic: lifestage

text: Alphaproteobacteria bacterium CMAR1

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

characteristic: original collection date

text: NOT PROVIDED

characteristic: original geographic location

text: asg

characteristic: project name

text: Both for sequencing

characteristic: relationship

characteristic: sample symbiont of

text: Alphaproteobacteria bacterium CMAR1

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: Y

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IZSLER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Listeria monocytogenes in smoked salmon

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: salmo salar

characteristic: host scientific name

characteristic: isolate

text: smoked salmon

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: Listeria monocytogenes in smoked salmon


text: Universitaetsklinikum Freiburg

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: clinical material

text: South Africa

text: Cape Town

characteristic: geographic location (region and locality)

text: Clinical

text: homo sapiens

text: clinical material

text: -33.97, 18.57

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: strain

text: Carbapenem-resistant Klebsiella pneumoniae South Africa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universitaetsklinikum Freiburg

text: public

text: clinical material

text: South Africa

text: Cape Town

text: Screen

text: homo sapiens

text: clinical material

text: -33.97, 18.57

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Erasmus MC Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:Erasmus MC Cancer Institute

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: natural killer cell

text: not collected

text: human

characteristic: common name

text: Protocols: BM aspirates from patients with newly diagnosed MM were collected at the Erasmus Medical Centre (Rotterdam, the Netherlands) as part of inclusion into Dutch-Belgian Cooperative Trial Group for Hematology Oncology (HOVON) trials or European Myeloma Network (EMN) trials. The protocols were approved by the Institutional Review Board of the Erasmus Medical Centre (Rotterdam, The Netherlands). Patient samples were obtained after informed consent, in accordance with the Declaration of Helsinki. Control BM was obtained by sternal aspiration from donors undergoing cardiothoracic surgery or by manual BM collection from femur heads collected after hip replacement surgery. Bone marrow mononuclear cells (BMMCs) were isolated by density gradient centrifugation using Histopaque (Sigma-Aldrich) and subsequent plasma cell isolation was performed using magnetic CD138+ bead enrichment (Stemcell). Plasma cells, pre-isolation fractions and plasma-cell depleted fractions were viably cryopreserved in 10% dimethyl sulfoxide (DMSO, Sigma-Aldrich). The 10X Chromium Single cell 3’ reagent Kit v3 (10X Genomics) was used for construction of single-cell transcriptomic libraries. Reverse transcription, cDNA amplification, and library preparation were all performed according to the manufacturer’s instructions. Cryopreserved bone marrow aspirates from 6 NDMM, 21 post-therapy and 6 RRMM patients were thawed and sorted into CD45+CD38−CD34−CD235a−CD71− and CD45+CD38+CD34−CD235a−CD71− immune fractions and processed for single-cell RNA sequencing according to the 10X Genomics protocol as previously described. This dataset was supplemented with data from 5 controls and 13 additional NDMM patients that were previously generated in our lab (De Jong et al. Nature Immunology 2021), resulting in a total single-cell dataset of 51 individuals, including 19 NDMM patients and 6 RRMM patients. As the majority of NK cells are CD38+and CD38high NK cells have increased cytotoxic function against cancer cells, CD38+ NK cells were identified in silico by transcription of KLRF1, KLRD1, GNLY and NKG7 as previously described (Yang et al. Nature Communications 2019).

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


text: Erasmus MC Cancer Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: natural killer cell

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Erasmus MC Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: natural killer cell

text: not collected

text: human

text: adult

text: multiple myeloma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: female


text: Erasmus MC Cancer Institute

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: natural killer cell

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: multiple myeloma

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Integrated Covid Hub North East

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Integrated Covid Hub North East by Integrated Covid Hub North East and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


text: SC

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: Mpumalanga

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Urine

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Isangi

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Umbilo


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: Mpumalanga

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Isangi

characteristic: serovar


text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica


text: University clinic Duesseldorf

text: public

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate


text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

text: Germany

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MELBOURNE

text: public

tag: Namespace:UNIVERSITY OF MELBOURNE

characteristic: collection date

text: Australia

text: human gut metagenome

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: human gastric microbiota


text: UNIVERSITY OF MELBOURNE

text: public

characteristic: Secondary Id

text: NCBI

characteristic: broker name

text: Australia

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: human gastric microbiota


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: May Yeo

text: University of Cambridge Department of Genetics Sainsbury Laboratory

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: England | Cambridge | Sainsbury Laboratory University of Cambridge | greenhouse zone 7

characteristic: geographic location (region and locality)

text: greenhouse at Sainsbury Laboratory Cambridge

characteristic: habitat

text: EDWIGE MOYROUD

text: SAINSBURY LABORATORY

text: adult

characteristic: lifestage

text: Hibiscus trionum

text: BUD

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Hibiscus trionum

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: May Yeo

characteristic: collection date

text: United Kingdom

text: EDWIGE MOYROUD

text: SAINSBURY LABORATORY

text: adult

text: Hibiscus verdcourtii

characteristic: organism

text: BUD

text: Hibiscus verdcourtii

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: May Yeo

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

characteristic: habitat

text: EDWIGE MOYROUD

text: SAINSBURY LABORATORY

text: adult

characteristic: lifestage

text: Hibiscus richardsonii

text: BUD

characteristic: organism part

characteristic: project name

text: Hibiscus richardsonii

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279910 of study SRP340671.

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Lentisphaeria bacterium

text: Parkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.

characteristic: sample derived from

text: uncultured Lentisphaeria bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Lentisphaerae;c__Lentisphaeria;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279910_bin.3_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: Lactobacillus amylovorus

characteristic: organism

characteristic: project name

text: Lactobacillus amylovorus

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus amylovorus

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279910_bin.42_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279910_bin.44_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: uncultured Eubacteriales bacterium

characteristic: organism

characteristic: project name

text: uncultured Eubacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279910_bin.7_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279911 of study SRP340671.

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: Candidatus Ventrousia excrementavium

characteristic: sample derived from

text: Candidatus Ventrousia excrementavium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Ventrousia;s__Candidatus Ventrousia excrementavium

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279911_bin.2_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: uncultured Prevotella sp.

characteristic: organism

characteristic: project name

text: uncultured Prevotella sp.

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279911_bin.29_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279911_bin.39_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: uncultured Bacilli bacterium

characteristic: organism

characteristic: project name

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279911_bin.6_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279912 of study SRP340671.

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: Sutterella wadsworthensis

text: Parkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.

characteristic: sample derived from

text: Sutterella wadsworthensis

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Sutterella;s__Sutterella wadsworthensis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279912_bin.26_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: uncultured Bacteroides sp.

characteristic: organism

characteristic: project name

text: uncultured Bacteroides sp.

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279912_bin.56_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279913 of study SRP340671.

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Clostridiaceae bacterium

characteristic: sample derived from

text: uncultured Clostridiaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279913_bin.15_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: Blautia wexlerae

characteristic: organism

characteristic: project name

text: Blautia wexlerae

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Blautia;s__Blautia wexlerae

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279913_bin.30_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Azospirillum sp.

characteristic: sample derived from

text: uncultured Azospirillum sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Azospirillaceae;g__Azospirillum;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279913_bin.38_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279914 of study SRP340671.

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: Phocaeicola coprocola

characteristic: organism

characteristic: project name

text: Phocaeicola coprocola

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__Phocaeicola;s__Phocaeicola coprocola

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279914_bin.37_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Ruminococcus sp.

characteristic: sample derived from

text: uncultured Ruminococcus sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279914_bin.6_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: Butyricimonas faecihominis

characteristic: organism

text: Parkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.

characteristic: project name

text: Butyricimonas faecihominis

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Butyricimonas;s__Butyricimonas faecihominis

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279914_bin.9_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279915 of study SRP340671.

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Bacteroides sp.

characteristic: sample derived from

text: uncultured Bacteroides sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279915_bin.14_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: Alistipes putredinis

characteristic: organism

characteristic: project name

text: Alistipes putredinis

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279915_bin.37_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16279916 of study SRP340671.

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: Faecalibacterium prausnitzii

characteristic: sample derived from

text: Faecalibacterium prausnitzii

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279916_bin.22_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaspades v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

text: Human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: faeces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human feces metagenome

text: colon

text: human feces metagenome

text: uncultured Paraprevotella sp.

characteristic: organism

characteristic: project name

text: uncultured Paraprevotella sp.

text: Illumina HiSeq 2500

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Paraprevotella;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR16279916_bin.44_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaspades v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.3

characteristic: binning software

text: Human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: faeces

characteristic: environmental medium

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: human feces metagenome

text: colon

characteristic: local environmental context

text: human feces metagenome

characteristic: metagenomic source

text: uncultured Firmicutes bacterium

characteristic: sample derived from

text: uncultured Firmicutes bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR16279916_bin.48_MetaWRAP_v1.3_MAG