text: University of Bern

text: public

text: missing: control sample

text: blank control reaction in a batch of sequencing library preparations

text: missing: control sample

text: fossil metagenome

text: fossil metagenome

text: not applicable

text: library preparation negative control


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Bern

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Bern

characteristic: Submitter Id

characteristic: collection date

text: fish remains from the bottom sediments of Lake Victoria

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

text: fossil metagenome

characteristic: organism

text: fossil metagenome

text: bone

text: fish fossil bone

characteristic: title


text: University of Bern

text: public

text: Uganda

text: fossil metagenome

text: fossil metagenome

text: bone

text: fish fossil bone


text: University of Bern

text: public

text: Uganda

text: fossil metagenome

text: fossil metagenome

text: tooth

text: fish fossil tooth


text: University of Bern

text: public

text: Tanzania

text: fossil metagenome

text: fossil metagenome

text: bones

text: fish fossil bones


text: University of Bern

text: public

text: Tanzania

text: fossil metagenome

text: fossil metagenome

text: scale

text: fish fossil scale


text: University of Bern

text: public

text: Tanzania

text: fossil metagenome

text: fossil metagenome

text: tooth

text: fish fossil tooth


text: University of Bern

text: public

text: Uganda

text: fossil metagenome

text: fossil metagenome

text: teeth

text: fish fossil teeth


text: Orebro University Hospital

text: public

tag: Namespace:Orebro University Hospital

text: not provided

text: Brazil

text: Homo sapiens

characteristic: host

text: Yes

text: male

text: urine

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Microbiota Center Amsterdam

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Microbiota Center Amsterdam

text: not collected

text: not collected

text: human gut metagenome

characteristic: phenotype

text: human gut metagenome


text: Microbiota Center Amsterdam

text: public

characteristic: Submitter Id

text: not collected

characteristic: collection date

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: CCV

characteristic: title


text: Microbiota Center Amsterdam

text: public

text: not collected

text: not collected

text: prokaryote coculture

text: prokaryote coculture


text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: not provided


text: public

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


text: public

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: receipt date

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

characteristic: title

text: not provided


text: Agrifood and Biosciences Institute

text: public

tag: Namespace:Agrifood and Biosciences Institute

characteristic: Submitter Id

characteristic: collection date

text: resequenced culture isolate

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Meles meles

text: culture

text: Badger

text: Agrifood and Biosciences Institute

text: Mycobacterium tuberculosis variant bovis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Agrifood and Biosciences Institute

text: public

text: resequenced culture isolate

text: United Kingdom

text: Northern Ireland

text: diseased

text: Bos taurus

characteristic: host scientific name

text: culture

text: Bovine

text: Agrifood and Biosciences Institute

characteristic: organism


characteristic: External Id

text: Agrifood and Biosciences Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: resequenced culture isolate

text: Ireland

text: Ireland

text: diseased

text: Bos taurus

text: culture

text: Bovine

text: Agrifood and Biosciences Institute


text: Agrifood and Biosciences Institute

text: public

characteristic: SRA accession

text: resequenced culture isolate

text: United Kingdom

text: Northern Ireland

text: diseased

text: Cervus elaphus

text: culture

characteristic: isolate

text: Deer

text: Agrifood and Biosciences Institute

characteristic: title


text: Agrifood and Biosciences Institute

text: public

characteristic: Submitter Id

characteristic: collection date

text: resequenced culture isolate

characteristic: description

text: United Kingdom

text: Northern Ireland

text: diseased

text: Lutra lutra

text: culture

text: Otter

text: Agrifood and Biosciences Institute


text: Agrifood and Biosciences Institute

text: public

text: resequenced culture isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Ovis aries

text: culture

text: Ovine

text: Agrifood and Biosciences Institute


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collection date

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: United Kingdom

text: England

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Orebro University Hospital

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Brazil

text: Homo sapiens

characteristic: host

text: Yes

text: male

text: urine

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Cu tailings

characteristic: description

text: Yes

text: Portugal

characteristic: geographic location (country and/or sea)

text: uncultured fungus

text: uncultured fungus


text: VTT

characteristic: INSDC last update

text: public

text: Cu Rougher feed

text: Yes

text: Portugal

text: uncultured fungus

text: uncultured fungus


text: VTT

text: public

text: Cu tailings

text: Yes

text: Finland

text: uncultured fungus

text: uncultured fungus


text: VTT

text: public

text: Reagent negative control

text: No

text: Finland

text: uncultured fungus

text: uncultured fungus


text: VTT

text: public

text: S tailings

text: Yes

text: Finland

text: uncultured fungus

text: uncultured fungus


text: VTT

text: public

text: Zn tailings

text: Yes

text: Portugal

text: uncultured fungus

text: uncultured fungus


text: VTT

text: public

text: Zn rougher feed

text: Yes

text: Portugal

text: uncultured fungus

text: uncultured fungus


text: University of Glasgow

text: public

tag: Namespace:University of Glasgow

text: O. volvulus mf dissected from adult female uterus

text: Ghana

text: Onchocerca volvulus

text: Onchocerca volvulus


text: University clinic Duesseldorf

text: public

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Institute of Gene Biology of the Russian Academy of Sciences

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Brettanomyces bruxellensis MAG from B2 sample

characteristic: description

text: beer

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sour wild ale

text: sour wild ale metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Gene Biology of the Russian Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Lactobacillus acetotolerans MAG from B2 sample

text: beer

text: Russia

text: metagenome-assembled genome

text: sour wild ale

text: sour wild ale metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Pediococcus damnosus MAG from B2 sample

characteristic: description

text: beer

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sour wild ale

text: sour wild ale metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Lactobacillus acetotolerans MAG from B14 sample

text: beer

text: Russia

text: metagenome-assembled genome

text: sour Flanders red ale

text: sour Flanders red ale metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Lactobacillus casei MAG from B25 sample

characteristic: description

text: beer

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sour fruited ale

text: sour fruited ale metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Pediococcus damnosus MAG from B25 sample

text: beer

text: Russia

text: metagenome-assembled genome

text: sour fruited ale

text: sour fruited ale metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Levilactobacillus brevis MAG from B25 sample

characteristic: description

text: beer

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sour fruited ale

text: sour fruited ale metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Lactobacillus acetotolerans MAG from B27 sample

text: beer

text: Russia

text: metagenome-assembled genome

text: american style wild ale

text: american style wild ale metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Lactobacillus acetotolerans MAG from B32 sample

characteristic: description

text: beer

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: american style wild ale

text: american style wild ale metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Mesorhizobium sp004136315 MAG from C18 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Rhodococcus erythropolis MAG from C18 sample

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry cider

text: dry cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Phyllobacterium sp900539805 MAG from C18 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Agrobacterium pusense MAG from C18 sample

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry cider

text: dry cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Secundilactobacillus MAG from C18 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Acetobacter ghanensis MAG from C18 sample

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry cider

text: dry cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Oenococcus sp004010835 MAG from C18 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Tatumella ptyseos MAG from C22 sample(high-quality)

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry cider

text: dry cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Tatumella ptyseos MAG from C23 sample(high-quality)

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Rhodococcus erythropolis MAG from C23 sample

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry cider

text: dry cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Gene Biology of the Russian Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Oenococcus oeni MAG from C23 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Secundilactobacillus MAG from C31 sample

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry cider

text: dry cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Brettanomyces bruxellensis MAG from C31 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Saccharomyces cerevisiae MAG from C33 sample

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry hopped cider

text: dry hopped cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Tatumella ptyseos MAG from C33 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry hopped cider

text: dry hopped cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500


text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Tatumella MAG from C33 sample

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: dry hopped cider

text: dry hopped cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

text: BUSCO,CheckM,gtdbtk

text: Tatumella ptyseos MAG from C34 sample

text: cider

text: Russia

text: metagenome-assembled genome

text: dry cider

text: dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


text: Orebro University Hospital

text: public

text: not provided

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Yes

text: male

text: urine

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: metaSPAdes,hicSPAdes

text: default

text: beverage spontaneous metagenome

characteristic: broad-scale environmental context

characteristic: completeness score

text: BUSCO,CheckM,gtdbtk

characteristic: completeness software

characteristic: contamination score

text: Tatumella ptyseos and Tatumella citrea imrpoved MAGs from C22 sample in 1 file

characteristic: description

text: cider

characteristic: environmental medium

text: Russia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sour wild ale

text: Dry cider metagenome

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes,hicSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: beverage spontaneous metagenome

characteristic: collection date

text: BUSCO,CheckM,gtdbtk

text: Tatumella ptyseos and Tatumella citrea imrpoved MAGs from C23 sample in 1 file

text: cider

text: Russia

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: sour wild ale

text: Dry cider metagenome

text: food fermentation metagenome

text: food fermentation metagenome

characteristic: organism

text: food fermentation metagenome

text: Illumina HiSeq 2500

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Applied Sciences Koblenz

text: public

tag: Namespace:University of Applied Sciences Koblenz

text: +NHC: nhc.n, +Nb: nb.n, passage: 5, replicate: 1

characteristic: description

text: Germany

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.y, passage: 5, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: +NHC: nhc.y, +Nb: nb.n, passage: 5, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: +NHC: nhc.y, +Nb: nb.y, passage: 5, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: +NHC: nhc.n, +Nb: nb.n, passage: 7, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.y, passage: 7, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.y, +Nb: nb.n, passage: 7, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.y, +Nb: nb.y, passage: 7, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.n, passage: 0, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.y, passage: 5, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.y, +Nb: nb.n, passage: 5, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.y, +Nb: nb.y, passage: 5, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.n, passage: 7, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.y, passage: 7, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.y, +Nb: nb.n, passage: 7, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.y, +Nb: nb.y, passage: 7, replicate: 1

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.n, passage: 5, replicate: 2

text: Germany


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.n, +Nb: nb.n, passage: 1, replicate: 1

text: Germany

text: Severe acute respiratory syndrome coronavirus 2


text: University of Applied Sciences Koblenz

text: public

text: +NHC: nhc.y, +Nb: nb.n, passage: 1, replicate: 1

text: Germany


text: Orebro University Hospital

text: public

text: not provided

text: Brazil

text: Homo sapiens

characteristic: host

text: Yes

text: male

text: urine

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: public

tag: Namespace:National Center for Pblic Health and Pharmacy

text: S. marcescens HC1

text: Hungary

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: isolate

text: blood culture

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens HC1


text: National Center for Pblic Health and Pharmacy

text: public

characteristic: collection date

text: S. marcescens HC2

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: not provided

text: blood culture

text: not provided

text: Serratia marcescens

characteristic: organism

text: Serratia marcescens

text: S. marcescens HC2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: S. marcescens HC3

text: Hungary

text: not provided

text: Homo sapiens

text: not provided

text: blood culture

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens HC3

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: S. marcescens HC4

characteristic: description

text: Hungary

text: not provided

text: Homo sapiens

text: not provided

text: blood culture

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens HC4


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: S. marcescens HC5

text: Hungary

text: not provided

text: Homo sapiens

text: not provided

text: blood culture

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens HC5


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: S. marcescens HC6

text: Hungary

text: not provided

text: Homo sapiens

text: not provided

text: blood culture

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens HC6


CAN

text: public

text: CAN

text: S. marcescens CAN

text: Hungary

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: blood sample taken through catheter

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens CAN


text: public

characteristic: collection date

text: S. marcescens HC7

text: Hungary

text: not provided

text: Homo sapiens

text: not provided

characteristic: isolate

text: blood culture

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens HC7


TRA

text: public

text: TRA

text: S. marcescens TRA

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: not provided

text: lower respiratory tract

text: not provided

text: Serratia marcescens

characteristic: organism

text: Serratia marcescens

text: S. marcescens TRA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: S. marcescens HC8

text: Hungary

text: not provided

text: Homo sapiens

text: not provided

text: blood culture

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens HC8


characteristic: ENA-LAST-UPDATE

text: public

text: S. marcescens BW1

text: Hungary

text: not provided

text: not applicable

text: not provided

text: cleaning wipe

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens BW1

characteristic: title


characteristic: External Id

text: public

text: S. marcescens BW2

characteristic: description

text: Hungary

text: not provided

text: not applicable

text: not provided

text: cleaning wipe

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens BW2


RB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: RB

text: S. marcescens RB

text: Hungary

text: not provided

text: not applicable

text: not provided

text: cleaning bucket

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens RB


GB

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GB

text: S. marcescens GB

text: Hungary

text: not provided

text: not applicable

text: not provided

text: cleaning bucket

text: not provided

text: Serratia marcescens

text: Serratia marcescens

text: S. marcescens GB


text: University clinic Duesseldorf

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

text: homo sapien

text: not collected

characteristic: host sex

characteristic: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University clinic Duesseldorf

text: public

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collection date

text: not collected

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: isolate

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Orebro University Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: Brazil

text: Homo sapiens

characteristic: host

text: Yes

text: male

text: urine

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

characteristic: title


text: Hong Kong Baptist University

text: public

characteristic: SRA accession

tag: Namespace:Hong Kong Baptist University

characteristic: Submitter Id

text: Pangaea

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

unit: terrestrial biome

characteristic: broad-scale environmental context

text: This sample represents a metagenomic bin from the metagenomic sample ERS16294340

characteristic: description

text: human g

unit: human g

characteristic: environmental medium

text: China

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human gut microbiome

text: anthropogenic terrestrial biome

unit: anthropogenic terrestrial biome

characteristic: local environmental context

text: human gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: project name

characteristic: sample derived from

text: metagenome

text: stLFR

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hong Kong Baptist University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pangaea

text: default

text: terrestrial biome

characteristic: collection date

text: This sample represents a metagenomic bin from the metagenomic sample ERS16294341

text: human g

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: human gut microbiome

text: anthropogenic terrestrial biome

text: human gut metagenome

text: metagenome

characteristic: organism

text: metagenome

text: stLFR

characteristic: title


text: Hong Kong Baptist University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Pangaea

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: This sample represents a metagenomic bin from the metagenomic sample ERS16294342

characteristic: description

text: human g

characteristic: environmental medium

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human gut microbiome

text: anthropogenic terrestrial biome

characteristic: local environmental context

text: human gut metagenome

text: metagenome

text: metagenome

text: stLFR


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14989:14989.soil.ctrl.CMU.16.10.2016.08.15.day10

text: Unknown

characteristic: age

text: n

characteristic: autopsy

text: cancer

text: USA

characteristic: country

text: 11489.soil.ctrl.CMU.16.10.2016.08.15.day10

text: Unknown

text: TRUE

text: Unknown

text: no

text: Unknown

characteristic: elevation

text: Free-living

text: Non-saline

text: Soil (non-saline)

text: urban biome

text: research facility

text: soil

text: soil

text: unknown

text: USA:CO:Grand Junction

text: USA

characteristic: height

text: Homo sapiens

characteristic: host scientific name

text: Unknown

text: years

text: not applicable

text: not provided

text: not applicable

text: not applicable

text: not applicable

text: human

text: cm

text: not applicable

text: Mrs. 16-10

text: Unknown

text: kg

text: Unknown

text: Unknown

text: on dry ice for 3 days

text: summer

characteristic: interval

characteristic: latitude

characteristic: longitude

text: n

text: n

characteristic: maggots

text: Unknown

characteristic: notes

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: soil metagenome

text: CSU

text: FALSE

text: unknown

text: Unknown

text: soil

text: n

text: not applicable

text: soil metagenome

text: female

text: Unknown

text: y

text: not applicable

text: unknown

text: PMI3 Summer


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_14989:14989.soil.face.SHSU.2016.067.2016.09.23.day8

characteristic: Submitter Id

text: Unknown

characteristic: collection date

text: USA

text: 11489.soil.face.SHSU.2016.067.2016.09.23.day8

characteristic: description

text: Unknown

text: TRUE

text: Unknown

text: Unknown

text: Free-living

text: Non-saline

text: Soil (non-saline)

text: urban biome

text: research facility

text: soil

text: soil

text: USA:TX:Huntsville

text: USA

characteristic: geographic location (country and/or sea)

text: not applicable

text: Unknown

text: years

text: not applicable

text: not provided

text: not applicable

text: not applicable

text: soil.face

text: not applicable

text: cm

text: not applicable

text: Unknown

text: not applicable

text: kg

text: Unknown

text: Unknown

text: summer

text: y

text: y

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: Unknown

text: soil metagenome

text: CSU

text: FALSE

text: Unknown

text: soil

text: soil

text: yes

text: left hand; scavenger dug under cage

text: soil metagenome

text: female

text: Unknown

text: n

text: PMI3 Summer


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Regional Virus Laboratory, Belfast Health and Social Care Trust; and: Genomics Core Technology Unit, Queens University Belfast.

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regional Virus Laboratory, Belfast Health and Social Care Trust; and: Genomics Core Technology Unit, Queens University Belfast.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided


characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230815_os_06/2023

characteristic: isolate

characteristic: organism

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230815_os_09/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230815_os_05/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230815_os_03/2023

characteristic: isolate

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230815_os_02/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230815_os_04/2023


text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Cu tailings

characteristic: description

text: Yes

text: Portugal

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium


text: VTT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cu Rougher feed

text: Yes

text: Portugal

text: uncultured bacterium

text: uncultured bacterium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VTT

text: public

text: Cu tailings

text: Yes

text: Finland

text: uncultured bacterium

text: uncultured bacterium

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

text: public

text: Reagent negative control

text: No

text: Finland

text: uncultured bacterium

text: uncultured bacterium


text: VTT

text: public

characteristic: collection date

text: S tailings

text: Yes

text: Finland

text: uncultured bacterium

text: uncultured bacterium


text: VTT

text: public

text: Zn rougher feed

text: Yes

text: Portugal

characteristic: geographic location (country and/or sea)

text: uncultured bacterium

text: uncultured bacterium


text: VTT

text: public

text: Zn RZ tailings

text: Yes

text: Portugal

text: uncultured bacterium

text: uncultured bacterium


characteristic: GISAID Accession ID

text: Dr. Risch

text: public

tag: Namespace:Dr. Risch

text: SIB

characteristic: broker name

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collecting institution

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1119R230124151046154/2021

characteristic: isolate

text: other

characteristic: sample capture status


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Custom protocol negative control

characteristic: description

text: No

text: Finland

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

text: public

characteristic: collection date

text: PCR negative control

text: No

text: Finland

characteristic: geographic location (country and/or sea)

text: uncultured bacterium

text: uncultured bacterium

characteristic: title


text: VTT

text: public

text: Process water

text: Yes

text: Finland

text: uncultured bacterium

text: uncultured bacterium


text: VTT

text: public

text: Yes

text: Finland

text: uncultured bacterium

text: uncultured bacterium


text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

text: DNA extraction control

text: Denmark

text: metagenome

text: metagenome

text: Activated sludge


Blank

text: AALBORG UNIVERSITY

text: public

text: Blank

text: DNA extraction blanks

text: Denmark

text: metagenome

text: metagenome

text: Blank


PCR-POS

text: AALBORG UNIVERSITY

text: public

text: PCR-POS

text: PCR positives (activated sludge)

text: Denmark

text: metagenome

text: metagenome

text: PCR-POS


PCR-NEG

text: AALBORG UNIVERSITY

text: public

text: PCR-NEG

text: PCR negatives (nuclease free water)

text: Denmark

text: metagenome

text: metagenome

text: PCR-NEG


text: University clinic Duesseldorf

text: public

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Norwegian University of Life Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Norwegian University of Life Sciences

characteristic: Submitter Id

text: Norway

text: soil metagenome

text: soil metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12607

tag: Namespace:Nord University

characteristic: collection date

text: Norway rat

characteristic: common name

text: CON

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

characteristic: title


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12608

text: Norway rat

text: CON

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12609

text: Norway rat

text: CON

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12610

text: Norway rat

text: CON

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12611

text: Norway rat

text: CONDSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12612

text: Norway rat

text: CON

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12613

text: Norway rat

text: CON

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12614

text: Norway rat

text: SEADSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12615

text: Norway rat

text: SEADSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12616

text: Norway rat

text: SEADSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12617

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12618

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12619

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12620

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12621

text: Norway rat

text: CONDSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12622

text: Norway rat

text: CONDSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12623

text: Norway rat

text: CON

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12624

text: Norway rat

text: CON

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:318-12625

text: Norway rat

text: CONDSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12626

text: Norway rat

text: CONDSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12627

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12628

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12629

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12630

text: Norway rat

text: SEA

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12631

text: Norway rat

text: SEADSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12632

text: Norway rat

text: SEADSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Nord University

text: public

text: ena-SAMPLE-TAB-28-08-2023-13:21:26:319-12633

text: Norway rat

text: SEADSS

text: Norway

text: Rattus norvegicus

text: Rattus norvegicus


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: KwaZulu-Natal

characteristic: geographic location (region and locality)

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Agona


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Newport


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: North West

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: Eastern Cape

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Isangi


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Chester

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa

text: Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: Eastern Cape

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen

characteristic: title


text: University clinic Duesseldorf

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:University clinic Duesseldorf

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: NCBI Accession ID

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collection date

text: not provided

text: Monkeypox virus

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: Monkeypox virus

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Monkeypox virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Monkeypox virus

text: Portugal

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YANGZHOU UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:YANGZHOU UNIVERSITY

text: ST34 Salmonella enterica subsp. enterica serovar Typhimurium from different sources in China

characteristic: description

text: China

text: not provided

characteristic: host health state

text: pig

characteristic: host scientific name

characteristic: isolate

text: pig

text: I 4,[5],12:i:-

characteristic: serovar

characteristic: strain

text: Salmonella enterica subsp. enterica serovar Typhimurium in China


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: YANGZHOU UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: China

characteristic: geographic location (country and/or sea)

text: not provided

text: pork

text: pork

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: I 4,[5],12:i:-


characteristic: ENA-LAST-UPDATE

text: YANGZHOU UNIVERSITY

characteristic: INSDC last update

text: public

text: China

text: not provided

text: pork

text: pork

characteristic: organism

text: Typhimurium

characteristic: title


characteristic: External Id

text: YANGZHOU UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: description

text: China

text: not provided

text: chicken

text: chicken

text: I 4,[5],12:i:-


text: YANGZHOU UNIVERSITY

text: public

text: China

text: not provided

characteristic: host health state

text: human

characteristic: host scientific name

characteristic: isolate

text: human

text: I 4,[5],12:i:-

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: YANGZHOU UNIVERSITY

characteristic: INSDC center name

text: public

text: China

text: not provided

text: pig

text: pig

text: I 4,[5],12:i:-


text: AALBORG UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: zymo hmw mock

text: Denmark

text: synthetic metagenome

text: synthetic metagenome

text: zymo hmw mock


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

tag: Namespace:Department of Biotechnology and Life Sciences (DBSV), University of Insubria

text: gilthead seabream

characteristic: common name

text: feed

text: Italy

characteristic: geographic location (country and/or sea)

text: Sparus aurata

text: Sparus aurata

text: Effect of insect meal on seabream gut microbiota


characteristic: External Id

text: Department of Biotechnology and Life Sciences (DBSV), University of Insubria

text: public

characteristic: INSDC status

text: gilthead seabream

text: feed

text: Italy

text: Sparus aurata

characteristic: organism

text: Sparus aurata

characteristic: title


text: public

characteristic: SRA accession

text: gilthead seabream

text: gut

characteristic: description

text: Italy

text: Sparus aurata

text: Sparus aurata


text: public

tag: Namespace:Center of Experimental Rheumatology, Department of Rheumatology, University Hospital Zurich, University of Zurich, Switzerland

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: Center of Experimental Rheumatology, Department of Rheumatology, University Hospital Zurich, University of Zurich, Switzerland

text: public

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


text: public

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


text: public

tag: Namespace:CEMM RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: Austrian Agency for Health and Food Safety (AGES), Spargelfeldstraße 191, 122 Vienna, Austria

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: CT value: 19.3 Gisaid EPI: EPI_ISL_1495407

characteristic: description

text: Austria

characteristic: geographic location (country and/or sea)

unit: years

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: unknown

characteristic: isolation source host-associated

characteristic: organism

characteristic: receipt date

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEMM RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: CT value: 20.2 Gisaid EPI: EPI_ISL_1495460

text: Austria

text: human

text: not provided

text: homo sapiens

text: female

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate

text: unknown

characteristic: sample capture status


text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: CT value: 24.2 Gisaid EPI: EPI_ISL_11230483

characteristic: description

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: unknown

characteristic: isolation source host-associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: CT value: 26.7 Gisaid EPI: EPI_ISL_1495459

text: Austria

text: human

text: not provided

text: homo sapiens

text: male

text: not provided

text: unknown

characteristic: organism

characteristic: receipt date

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: CT value: 17.5 Gisaid EPI: EPI_ISL_1495445

characteristic: description

text: Austria

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate

text: unknown

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: CT value: 19.6 Gisaid EPI: EPI_ISL_1495449

text: Austria

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: unknown

characteristic: isolation source host-associated

text: active surveillance in response to outbreak


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: CT value: 16.6 Gisaid EPI: EPI_ISL_1495409

characteristic: description

text: Austria

text: human

text: not provided

text: homo sapiens

text: male

text: not provided

text: unknown

characteristic: organism

characteristic: receipt date

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: CT value: 29 Gisaid EPI: EPI_ISL_1495458

text: Austria

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: homo sapiens

text: female

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate

text: unknown

characteristic: sample capture status


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

text: CT value: 17.9 Gisaid EPI: EPI_ISL_1495410

text: Austria

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: unknown

characteristic: isolation source host-associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

characteristic: collector name

text: Austria

text: Salzburg

characteristic: geographic location (region and locality)

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: swab

characteristic: organism

characteristic: receipt date

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Gisaid EPI: EPI_ISL_1671051

characteristic: description

text: Austria

characteristic: geographic location (country and/or sea)

text: Vienna

text: human

text: not provided

text: homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate

text: Oropharyngeal swab

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

characteristic: collector name

text: Gisaid EPI: EPI_ISL_1670973

text: Austria

text: Vienna

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: unknown

characteristic: isolation source host-associated