characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


status: PUBLIC

tag: attribute

characteristic: INSDC first public

text: public

tag: Namespace:University College London, Great Ormond Street Hospital for Children NHS Foundation Trust, Imperial College Healthcare NHS Trust

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College London, Great Ormond Street Hospital for Children NHS Foundation Trust, Imperial College Healthcare NHS Trust

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


text: UNIVERSITY OF MELBOURNE

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF MELBOURNE

text: Australia

text: human gut metagenome

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: human gastric microbiota


text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital of North Norway

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University Hospital of North Norway

characteristic: Submitter Id

characteristic: collection date

text: Bacterial culture

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: INSDC first public

text: public

tag: Namespace:Regional Public Health Authority with the seat in Trenčín, Slovakia

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

unit: years

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: unknown

characteristic: host subject id

text: unknown

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regional Public Health Authority with the seat in Trenčín, Slovakia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: female

text: unknown

text: unknown

text: RNA

text: Nasopharyngeal swab

characteristic: sample capture status


characteristic: INSDC first public

text: public

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: unknown

text: unknown

text: RNA

text: Nasopharyngeal swab

characteristic: organism


Aviguard

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Aviguard

tag: Namespace:The Roslin Institute (University of Edinburgh)

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Aviguard used to treat chickens

characteristic: description

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Aviguard only

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

text: Aviguard

characteristic: title


text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Reagent only control from DNA extraction batch 1

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Reagent only DNA extraction control

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Reagent only control from DNA extraction batch 2

characteristic: description

text: United Kingdom

text: Reagent only DNA extraction control

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Reagent only control from DNA extraction batch 3

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reagent only DNA extraction control

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Reagent only control from DNA extraction batch 4

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Reagent only DNA extraction control

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Reagent only control from DNA extraction batch 5

characteristic: description

text: United Kingdom

text: Reagent only DNA extraction control

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Reagent only control from DNA extraction batch 6

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reagent only DNA extraction control

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Reagent only control from DNA extraction batch 7

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Reagent only DNA extraction control

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Reagent only control from DNA extraction batch 8

characteristic: description

text: United Kingdom

text: Reagent only DNA extraction control

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Reagent only control from DNA extraction batch 9

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reagent only DNA extraction control

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3266

text: Chicken number 3266

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 42

characteristic: host age

text: Caecal contents

text: Aviguard delivered to birds as a 5ml coarse spray (500 ml/1 000 birds) within a transparent box (length 25 cm, width 25cm, height 10cm). The spray was delivered through an opening in the top of the box, and an air filter was placed at the opening to the side of the box. Birds were left in closed box for 14 minutes.

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3271

characteristic: description

text: Chicken number 3271

text: United Kingdom

text: Day 14

text: Caecal contents

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3273

text: Chicken number 3273

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3275

text: Chicken number 3275

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 42

characteristic: host age

text: Caecal contents

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3284

characteristic: description

text: Chicken number 3284

text: United Kingdom

text: Day 42

text: Caecal contents

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3287

text: Chicken number 3287

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3289

text: Chicken number 3289

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 14

characteristic: host age

text: Caecal contents

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3294

characteristic: description

text: Chicken number 3294

text: United Kingdom

text: Day 42

text: Caecal contents

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3301

text: Chicken number 3301

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3310

text: Chicken number 3310

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 42

characteristic: host age

text: Caecal contents

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3265

characteristic: description

text: Chicken number 3265

text: United Kingdom

text: Day 14

text: Caecal contents

text: Distilled water delivered to birds as a 5ml coarse spray (500 ml/1 000 birds) within a transparent box (length 25 cm, width 25cm, height 10cm). The spray was delivered through an opening in the top of the box, and an air filter was placed at the opening to the side of the box. Birds were left in closed box for 14 minutes.

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3268

text: Chicken number 3268

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 42

text: Caecal contents

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3269

text: Chicken number 3269

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 42

characteristic: host age

text: Caecal contents

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3276

characteristic: description

text: Chicken number 3276

text: United Kingdom

text: Day 42

text: Caecal contents

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3283

text: Chicken number 3283

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3286

text: Chicken number 3286

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 14

characteristic: host age

text: Caecal contents

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3296

characteristic: description

text: Chicken number 3296

text: United Kingdom

text: Day 42

text: Caecal contents

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3298

text: Chicken number 3298

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3299

text: Chicken number 3299

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 14

characteristic: host age

text: Caecal contents

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3306

characteristic: description

text: Chicken number 3306

text: United Kingdom

text: Day 42

text: Caecal contents

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3263

text: Chicken number 3263

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 42

text: Caecal contents

characteristic: host body site

text: Tracheal inoculation of 0.1ml Aviguard�

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3267

text: Chicken number 3267

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 42

characteristic: host age

text: Caecal contents

text: Tracheal inoculation of 0.1ml Aviguard�

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3272

characteristic: description

text: Chicken number 3272

text: United Kingdom

text: Day 42

text: Caecal contents

text: Tracheal inoculation of 0.1ml Aviguard�

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3278

text: Chicken number 3278

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

text: Tracheal inoculation of 0.1ml Aviguard�

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3281

text: Chicken number 3281

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 14

characteristic: host age

text: Caecal contents

text: Tracheal inoculation of 0.1ml Aviguard�

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3290

characteristic: description

text: Chicken number 3290

text: United Kingdom

text: Day 42

text: Caecal contents

text: Tracheal inoculation of 0.1ml Aviguard�

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3293

text: Chicken number 3293

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

text: Tracheal inoculation of 0.1ml Aviguard�

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

characteristic: collection date

text: metagenome

text: Caecal contents sample from Chicken number 3295

text: Chicken number 3295

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 14

characteristic: host age

text: Caecal contents

text: Tracheal inoculation of 0.1ml Aviguard�

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Gallus gallus (Roslin broiler)

characteristic: broad-scale environmental context

text: metagenome

text: Caecal contents sample from Chicken number 3297

characteristic: description

text: Chicken number 3297

text: United Kingdom

text: Day 42

text: Caecal contents

text: Tracheal inoculation of 0.1ml Aviguard�

text: metagenome

characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

text: metagenome

text: Caecal contents sample from Chicken number 3307

text: Chicken number 3307

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Day 14

text: Caecal contents

characteristic: host body site

text: Tracheal inoculation of 0.1ml Aviguard�

characteristic: local environmental context

characteristic: negative control type

text: metagenome

characteristic: project name

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gallus gallus (Roslin broiler)

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text: metagenome

text: Caecal contents sample from Chicken number 3261

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text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Day 42

characteristic: host age

text: Caecal contents

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

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text: Gallus gallus (Roslin broiler)

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text: Caecal contents sample from Chicken number 3262

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characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

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text: Caecal contents sample from Chicken number 3270

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text: United Kingdom

characteristic: geographic location (latitude)

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text: Day 14

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text: Gallus gallus (Roslin broiler)

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text: Caecal contents sample from Chicken number 3282

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characteristic: host age

text: Caecal contents

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characteristic: ENA-CHECKLIST

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characteristic: External Id

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text: Gallus gallus (Roslin broiler)

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text: Caecal contents sample from Chicken number 3291

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characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

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text: Day 42

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characteristic: host age

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characteristic: ENA-CHECKLIST

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text: Gallus gallus (Roslin broiler)

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text: Caecal contents sample from Chicken number 3303

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characteristic: organism

text: metagenome


text: public

text: Gallus gallus (Roslin broiler)

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text: Caecal contents sample from Chicken number 3305

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text: United Kingdom

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text: Day 14

text: Caecal contents

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text: Caecal contents sample from Chicken number 3308

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characteristic: host age

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characteristic: ENA-CHECKLIST

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characteristic: External Id

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text: Caeca_5_Control_oral_and_tracheal_3264_Day_42

text: Gallus gallus (Roslin broiler)

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text: metagenome

text: Caecal contents sample from Chicken number 3264

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text: Caecal contents

text: Tracheal inoculation of 0.1ml distilled water and oral gavage with 0.1ml distilled water

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characteristic: organism

text: metagenome


text: public

text: Caeca_5_Control_oral_and_tracheal_3274_Day_42

text: Gallus gallus (Roslin broiler)

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text: Gallus gallus (Roslin broiler)

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text: Day 14

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characteristic: ENA-CHECKLIST

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text: Gallus gallus (Roslin broiler)

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text: public

text: Caeca_5_Control_oral_and_tracheal_3280_Day_42

text: Gallus gallus (Roslin broiler)

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text: Caeca_5_Control_oral_and_tracheal_3285_Day_14

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text: Gallus gallus (Roslin broiler)

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text: metagenome

text: Caecal contents sample from Chicken number 3285

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text: Day 14

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text: Caecal contents

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characteristic: ENA-CHECKLIST

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text: Caeca_5_Control_oral_and_tracheal_3288_Day_14

text: Gallus gallus (Roslin broiler)

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text: metagenome


text: public

text: Caeca_5_Control_oral_and_tracheal_3302_Day_14

text: Gallus gallus (Roslin broiler)

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text: Caecal contents sample from Chicken number 3304

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characteristic: ENA-CHECKLIST

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text: Caeca_5_Control_oral_and_tracheal_3309_Day_42

text: Gallus gallus (Roslin broiler)

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text: Control_PBS_1_Avigaurd_spray_3271_Day_14

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text: PBS used to dilute Aviguard passed through equipment and used as DNA extraction control sample, prior to sampling Chicken number 3271

characteristic: environmental medium

text: United Kingdom

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text: Day 14

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text: Control for Aviguard delivered to birds as a 5ml coarse spray (500 ml/1 000 birds) within a transparent box (length 25 cm, width 25cm, height 10cm). The spray was delivered through an opening in the top of the box, and an air filter was placed at the opening to the side of the box. Birds were left in closed box for 14 minutes.

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text: Control for distilled water delivered to birds as a 5ml coarse spray (500 ml/1 000 birds) within a transparent box (length 25 cm, width 25cm, height 10cm). The spray was delivered through an opening in the top of the box, and an air filter was placed at the opening to the side of the box. Birds were left in closed box for 14 minutes.

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text: The Roslin Institute (University of Edinburgh)

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text: Control_PBS_3_Tracheal_Aviguard_3278_Day_14

text: Gallus gallus (Roslin broiler)

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text: PBS used to dilute Aviguard passed through equipment and used as DNA extraction control, prior to sampling Chicken number 3278

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text: PBS used to dilute Aviguard passed through equipment and used as DNA extraction control, prior to sampling Chicken number 3297

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text: PBS used to dilute Aviguard passed through equipment and used as DNA extraction control, prior to sampling Chicken number 3308

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text: PBS used to dilute Aviguard passed through equipment and used as DNA extraction control, prior to sampling Chicken number 3288

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text: Day 42

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text: Aviguard delivered to birds as a 5ml coarse spray (500 ml/1 000 birds) within a transparent box (length 25 cm, width 25cm, height 10cm). The spray was delivered through an opening in the top of the box, and an air filter was placed at the opening to the side of the box. Birds were left in closed box for 14 minutes.

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text: Distilled water delivered to birds as a 5ml coarse spray (500 ml/1 000 birds) within a transparent box (length 25 cm, width 25cm, height 10cm). The spray was delivered through an opening in the top of the box, and an air filter was placed at the opening to the side of the box. Birds were left in closed box for 14 minutes.

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text: Tracheal swab sample from Chicken number 3272

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text: Tracheal swab sample from Chicken number 3274

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