text: public

text: Germany

text: BfR-CA-17135, 22-CA00137

text: animal

text: Campylobacter coli

text: Campylobacter coli


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

characteristic: Submitter Id

characteristic: collection date

text: Ring trial sample of participant LC12_CE

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: BfR-CA-15954, 22-CA00138

characteristic: isolate

text: food

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

characteristic: title


text: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

text: public

text: Germany

text: BfR-CA-16317, 22-CA00139

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15146, 22-CA00140

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15160, 22-CA00141

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-17201, 22-CA00142

text: food

text: Campylobacter lari

text: Campylobacter lari


text: public

text: Germany

text: BfR-CA-14973, 22-CA00143

text: food

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-13985, 22-CA00144

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-14430, 22-CA00145

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: food

text: Escherichia coli

text: Escherichia coli


text: public

text: Germany

text: animal

text: Escherichia coli

text: Escherichia coli


text: public

text: Ring trial sample of participant LC13_CE

text: Germany

text: BfR-CA-17135, 22-CA00136

text: animal

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-17135, 22-CA00137

text: animal

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-15954, 22-CA00138

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-16317, 22-CA00139

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15146, 22-CA00140

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15160, 22-CA00141

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-17201, 22-CA00142

text: food

text: Campylobacter lari

text: Campylobacter lari


text: public

text: Germany

text: BfR-CA-14973, 22-CA00143

text: food

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-13985, 22-CA00144

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-14430, 22-CA00145

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: food

text: Escherichia coli

text: Escherichia coli


text: public

text: Germany

text: animal

text: Escherichia coli

text: Escherichia coli


text: public

text: Ring trial sample of participant LC14_CE

text: Germany

text: BfR-CA-17135, 22-CA00136

text: animal

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-17135, 22-CA00137

text: animal

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-15954, 22-CA00138

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-16317, 22-CA00139

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15146, 22-CA00140

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15160, 22-CA00141

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-17201, 22-CA00142

text: food

text: Campylobacter lari

text: Campylobacter lari


text: public

text: Germany

text: BfR-CA-14973, 22-CA00143

text: food

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-13985, 22-CA00144

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-14430, 22-CA00145

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: food

text: Escherichia coli

text: Escherichia coli


text: public

text: Germany

text: animal

text: Escherichia coli

text: Escherichia coli


text: public

text: Ring trial sample of participant LC15_CE

text: Germany

text: BfR-CA-17135, 22-CA00136

text: animal

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-17135, 22-CA00137

text: animal

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-15954, 22-CA00138

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-16317, 22-CA00139

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15146, 22-CA00140

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-15160, 22-CA00141

text: human

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-17201, 22-CA00142

text: food

text: Campylobacter lari

text: Campylobacter lari


text: public

text: Germany

text: BfR-CA-14973, 22-CA00143

text: food

text: Campylobacter coli

text: Campylobacter coli


text: public

text: Germany

text: BfR-CA-13985, 22-CA00144

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: BfR-CA-14430, 22-CA00145

text: food

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Germany

text: food

text: Escherichia coli

text: Escherichia coli


text: public

text: Germany

text: animal

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF BOLOGNA

text: public

tag: Namespace:UNIVERSITY OF BOLOGNA

text: Italy

text: poultry litter metagenome

text: poultry litter metagenome

text: Poultry litter sample


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: human gut metagenome

text: human gut metagenome

text: Human Feces


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: human skin metagenome

text: human skin metagenome

text: Human Skin Swab


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: indoor metagenome

text: indoor metagenome

text: House environment


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: clothing metagenome

text: clothing metagenome

text: Human Coat Swab


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: soil metagenome

text: soil metagenome

text: Soil sample


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: indoor metagenome

text: indoor metagenome

text: Vent within Poultry House


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: indoor metagenome

text: indoor metagenome

text: Wall within Poultry House


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: air metagenome

text: air metagenome

text: Air within Poultry House


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: clothing metagenome

text: clothing metagenome

text: Human Boot Swab


text: UNIVERSITY OF BOLOGNA

text: public

text: Italy

text: drinking water metagenome

text: drinking water metagenome

text: Poultry drinking water


text: Genentech

text: public

text: ArrayExpress

characteristic: broker name

text: T cell

text: not collected

text: house mouse

characteristic: common name

text: Protocols: Tumors were collected 7 days after treatment initiation. Tumors were weighed and enzymatically digested using a cocktail of dispase, collagenase P, and DNaseI for 45 min at 37°C, to obtain a single-cell suspension. Cells were counted using a Vi-CELL XR (Beckman Coulter, Brea, CA). For sorting, cells from tumor digestion were first enriched for live cells using Dead Cell Removal Kit following the manufacturer’s instructions. Cells were then incubated with mouse BD Fc block (5 µg/ml) for 30 min on ice. The cells were then stained for 30 minutes on ice with the following antibodies: CD45 BUV395 (1 µg/ml), CD11b BV650 (0.5 µg/ml), CD19 BV650 (1 µg/ml), NK1.1 BV650 (1 µg/ml), CD90.2 BV785 (1 µg/ml), CD44 FITC (1 µg/ml), plus one of Hashtag antibodies (see attached file, scTCR.Barcodes.csv). Just before sorting cells from the same treatment group/ tissue of origin were pulled together and stained with 7AAD and eBioscience™ Calcein Blue AM Viability Dye. T cells from the tumor were sorted as 7AAD-CB+ CD45+ CD11b-CD19-NK1.1-CD90+. Cells were sorted using a BD FACSAria™ Fusion flow cytometer (BD Biosciences, San Jose, CA). 75k cells T cells were sorted in 300 UL of MACS buffer kept at 4C. Cells were then counted and resuspended at an adequate concentration for loading into the 10X chip.For E22-specific CD8 T cell sorting, cells from tumor digestion were first enriched for live cells using Dead Cell Removal Kit following the manufacturer’s instructions. Cells were then incubated with mouse BD Fc block (5 µg/ml) for 30 min on ice. Cells were stained with E22 Tetramer PE (1:12.5 dilution) for 20 minutes at room temperature. Cells were then stained for 30 minutes on ice with the following antibodies: CD45 BUV395 (1 µg/ml), CD11b BV650 (0.5 µg/ml), CD19 BV650 (1 µg/ml), NK1.1 BV650 (1 µg/ml), CD90.2 BV785 (1 µg/ml), CD8 APC-Cy7 (1 μg/ml), CD4 BV711 (1 µg/ml) plus one of the Hashtag antibodies (see attached file, E22.Barcodes.csv). Just before sorting cells from the same treatment group/ tissue of origin were pulled together and stained with 7AAD and eBioscience™ Calcein Blue AM Viability Dye. T cells from the tumor were sorted as 7AAD-CB+ CD45+ CD11b-CD19-NK1.1-CD90+CD8+E22+. Cells were sorted using a BD FACSAria™ Fusion flow cytometer (BD Biosciences, San Jose, CA). 16 to 50k cells T cells were sorted in 300 UL of MACS buffer kept at 4C. Cells were then counted and resuspended at an adequate concentration for loading into the 10X chip. After FACS sorting, cells were processed using the Chromium Single Cell Gene Expression 3′ Library and Gel Bead kit following the manufacturer’s instructions (10x Genomics). Cells were counted and checked for viability using a Vi-CELL XR cell counter (Beckman Coulter) and then injected into microfluidic chips to form Gel Beads-in-Emulsion (GEMs) in the 10x Chromium instrument. Reverse transcription was performed on the GEMs, and reverse-transcribed products were purified and amplified. Gene expression libraries and hashtag libraries were made from the cDNA, profiled using a Bioanalyzer High Sensitivity DNA kit (Agilent Technologies), and quantified with a Kapa Library Quantification kit (Kapa Biosystems).

text: not collected

characteristic: immunophenotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: 10x feature barcode

characteristic: protocol

text: tumor

characteristic: sampling site

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genentech

characteristic: INSDC center name

text: public

text: ArrayExpress

text: T cell

text: not collected

text: house mouse

text: not collected

text: 7AAD-CB+ CD45+ CD11b-CD19-NK1.1-CD90+CD8+E22+

text: not applicable

text: Mus musculus

text: Mus musculus

text: 10x 5' v2

text: tumor

text: Mus musculus


text: Genentech

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: T cell

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: 10x TCR enrichment

text: tumor

text: Mus musculus


text: Genentech

text: public

text: ArrayExpress

text: T cell

text: not collected

characteristic: collection date

text: house mouse

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: 10x feature barcode

text: tumor

text: Mus musculus


text: UCSDMI

text: public

text: USA

characteristic: country

text: fecal sample

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: USA

text: USA

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: years

text: UBERON:feces

text: restricted access

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSDMC

text: TRUE

text: feces

text: human gut metagenome

characteristic: title

text: METS-MICROBIOME


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: USA

text: fecal sample

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: USA

text: USA

text: Homo sapiens

text: restricted access

text: years

text: UBERON:feces

text: restricted access

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: human gut metagenome

text: UCSDMC

text: TRUE

text: feces

text: human gut metagenome

text: METS-MICROBIOME


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_13512:13512.Extraction.Blank.A2.plate19

characteristic: Submitter Id

text: USA

text: extraction blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.A5.plate19

characteristic: collection date

text: USA

text: extraction blank

characteristic: description

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

characteristic: organism

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.B2.plate19

text: USA

characteristic: country

text: extraction blank

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

characteristic: host scientific name

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: latitude

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.B5.plate19

text: USA

text: extraction blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: longitude

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

characteristic: title

text: METS-MICROBIOME


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_13512:13512.Extraction.Blank.C2.plate19

text: USA

text: extraction blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_13512:13512.Extraction.Blank.C5.plate19

characteristic: Submitter Id

text: USA

text: extraction blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.D2.plate19

characteristic: collection date

text: USA

text: extraction blank

characteristic: description

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

characteristic: organism

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.D5.plate19

text: USA

characteristic: country

text: extraction blank

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

characteristic: host scientific name

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: latitude

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.E1.plate19

text: USA

text: extraction blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: longitude

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_13512:13512.Extraction.Blank.E2.plate19

text: USA

text: extraction blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_13512:13512.Extraction.Blank.E5.plate19

characteristic: Submitter Id

text: USA

text: extraction blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.F1.plate19

characteristic: collection date

text: USA

text: extraction blank

characteristic: description

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: metagenome

characteristic: organism

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Extraction.Blank.F2.plate19

text: USA

characteristic: country

text: extraction blank

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

characteristic: host scientific name

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: latitude

text: metagenome

text: UCSDMC

text: TRUE

text: control blank

text: metagenome

text: METS-MICROBIOME


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characteristic: geographic location (country and/or sea)

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

characteristic: organism

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.D4.plate19

text: USA

characteristic: country

text: zymo mock

text: TRUE

characteristic: elevation

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

characteristic: host scientific name

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: latitude

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate09

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: longitude

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

characteristic: title

text: METS-MICROBIOME


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate10

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate11

characteristic: Submitter Id

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate12

characteristic: collection date

text: USA

text: zymo mock

characteristic: description

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

characteristic: organism

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate13

text: USA

characteristic: country

text: zymo mock

text: TRUE

characteristic: elevation

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

characteristic: host scientific name

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: latitude

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate14

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: longitude

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

characteristic: title

text: METS-MICROBIOME


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate15

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_13512:13512.Zymo.mock.community.D6.plate16

characteristic: Submitter Id

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.E4.plate19

characteristic: collection date

text: USA

text: zymo mock

characteristic: description

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

characteristic: organism

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.F4.plate19

text: USA

characteristic: country

text: zymo mock

text: TRUE

characteristic: elevation

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

characteristic: host scientific name

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: latitude

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.G4.plate19

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

characteristic: longitude

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

characteristic: title

text: METS-MICROBIOME


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_13512:13512.Zymo.mock.community.H4.plate19

text: USA

text: zymo mock

text: TRUE

text: Control

text: Positive

text: Mock community

text: Mock community

text: urban biome

text: research facility

text: cell culture

text: misc environment

text: USA:CA:San Diego

text: USA

text: control sample

text: control blank

text: years

text: control sample

text: control blank

text: control sample

text: control sample

text: control sample

text: control sample

text: control sample

text: synthetic metagenome

text: UCSDMC

text: TRUE

text: control positive mock community

text: synthetic metagenome

text: METS-MICROBIOME


text: Robert Koch Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: Sampling Strategy

text: IMS-10122-CVDP-92FF0A93-74F8-4776-87CF-CAE4F9D51ADC

tag: Namespace:Robert Koch Institute

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

text: Limbach - MVZ Labor Dr. Volkmann & Kollegen, Gerwigstr. 67; 76131 Karlsruhe

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Molecular surveillance of SARS-CoV-2 in Germany


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

text: public

text: not provided

text: IMS-10150-CVDP-38B6DDAD-2F5C-4282-81F4-F36012AFD049

text: RKI-OSEDA

text: SYNLAB MVZ Hamburg, Osterbekstraße 90C; 22083 Hamburg

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Hamburg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Robert Koch Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10013-CVDP-80A12451-B5CE-4BE3-916D-5B9671F713CB

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

text: Bioscientia Labor Wermsdorf, Am Fasanenholz 31; 04779 Wermsdorf

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Saxony

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10146-CVDP-0AC92C42-ABF9-4748-BB1B-B793F571BD01

text: RKI-OSEDA

text: Limbach - MVZ Humangenetik Ulm, Karlstraße 31; 89073 Ulm

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

text: IMS-10013-CVDP-C17DB312-8498-4416-8C39-2A0D004E83B7

text: RKI-OSEDA

text: Labor Dr. Schumacher MVZ, Dr.-Franz-Mertens-Straße 8; 27580 Bremerhaven

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Bremen

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Suspect sampling

characteristic: Sampling Strategy

text: IMS-10594-CVDP-815AD419-EC47-4F74-994B-B48A3093160A

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

text: Clemenshospital - Alexianer Clemenshospital Münster, Düesbergweg 124; 48153 Münster

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/North Rhine-Westphalia

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

text: IMS-10116-CVDP-5C1BC7CC-BE39-42B3-8BD4-FCC73642A155

text: RKI-OSEDA

text: Labor Mönchengladbach MVZ Dr. Stein + Kollegen GbR, Tomphecke 45; 41169 Mönchengladbach

text: not provided

text: Germany

text: Europe/Germany/North Rhine-Westphalia

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

characteristic: SRA accession

text: Suspect sampling

text: IMS-10182-CVDP-B4ECE70E-B14B-41C4-B2D1-5B1E0E9C9B6E

text: RKI-OSEDA

text: Labor Becker & Kollegen (Standort München), Führichstraße 70; 81671 München

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10203-CVDP-8711116C-17BE-4DEB-A83D-43C228609CD3

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

text: MVZ Labor Dr. Fenner und Kollegen (Standort Hamburg), Bergstraße 14; 20095 Hamburg

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Hamburg

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

tag: Namespace:NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: common name

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

characteristic: strain

text: PRCH346 (DMSO1)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

characteristic: SRA accession

characteristic: collection date

text: Norway

characteristic: geographic location (country and/or sea)

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

characteristic: organism

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH347 (DMSO2)

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH348 (DMSO3)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

characteristic: Submitter Id

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH349 (26C1)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH350 (26C2)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH351 (26C3)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH352 (DP1)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH353 (DP2)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH354 (DP3)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH355 (DMSO_Fe1)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH356 (DMSO_Fe2)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH357 (DMSO_Fe3)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH358 (26C_Fe1)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH359 (26C_Fe2)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH360 (26C_Fe3)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH361 (DP_Fe1)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH362 (DP_Fe2)


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Norway

text: RNA samples from Candida glabrata

text: Nakaseomyces glabratus

text: Nakaseomyces glabratus

text: NRRL YB-4025

text: PRCH363 (DP_Fe3)


text: Robert Koch Institute

text: public

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10013-CVDP-56A7142A-917E-4853-987C-DEF5CB68F93F

text: RKI-OSEDA

characteristic: broker name

text: Sonic - Dr. Staber & Kollegen GmbH München, Hofer Str. 15; 81737 München

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Bavaria

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Molecular surveillance of SARS-CoV-2 in Germany


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Random sampling

text: IMS-10013-CVDP-BCE52481-2FE6-4818-B0B9-4DEFE1AA48D8

text: RKI-OSEDA

text: LabKom - Labor Augsburg MVZ GmbH, August-Wessels-Straße 5; 86154 Augsburg

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title