characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V80

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


status: PUBLIC

tag: attribute

text: Hospital Sirio-Libanes

text: public

tag: Namespace:Hospital Sirio-Libanes

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V81

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: Bladder microbiota in bladder cancer and controls

characteristic: project name

unit: °C

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V82

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V83

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

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text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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characteristic: SRA accession

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text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V84

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V85

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V86

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V87

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V88

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V89

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V90

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V91

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V92

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V93

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V94

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V95

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V96

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V97

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V98

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V99

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V100

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V101

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

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text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V102

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V103

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

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text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

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characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V104

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V105

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V106

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V107

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V108

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V109

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

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text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V110

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V111

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V112

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V113

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V114

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V115

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V116

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V117

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V118

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V119

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V120

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V121

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V122

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V123

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V124

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V125

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V126

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V127

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urinary bladder

characteristic: broad-scale environmental context

text: not collected

characteristic: collection date

characteristic: description

text: urine

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Region Panel V1V128

text: not collected

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: catheter


text: Hospital Sirio-Libanes

text: public

text: urinary bladder

text: not collected

text: urine

characteristic: environmental medium

text: Brazil

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Region Panel V1V129

characteristic: library construction method

text: not collected

characteristic: local environmental context

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

characteristic: project name

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHINA ACADEMY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CHINA ACADEMY

characteristic: Submitter Id

characteristic: collection date

text: sludge

characteristic: environment (biome)

text: anearobic digestion

characteristic: environment (feature)

text: anearobic digestion

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: metagenome

text: environmental samples

text: Predictability of microbial communities in AD

text: environmental samples

text: Miseq

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: Pattraporn Satitsuksanoa

text: public

tag: Namespace:Pattraporn Satitsuksanoa

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Pattraporn Satitsuksanoa

text: public

text: human

text: 12_Patient 3 positive cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 12_Patient 3 positive cells after OIT


text: Pattraporn Satitsuksanoa

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: 13_Patient 3 negative cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 13_Patient 3 negative cells after OIT


text: Pattraporn Satitsuksanoa

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: 14_Patient 4 positive cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 14_Patient 4 positive cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 22_Patient 5 positive cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 22_Patient 5 positive cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 24_Patient 6 positive cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 24_Patient 6 positive cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 25_Patient 6 negative cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 25_Patient 6 negative cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 28_Patient 6 positive cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 28_Patient 6 positive cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 29_Patient 6 negative cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 29_Patient 6 negative cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 30_Patient 7 positive cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 30_Patient 7 positive cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 31_Patient 7 negative cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 31_Patient 7 negative cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 34_Patient 7 positive cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 34_Patient 7 positive cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 35_Patient 7 negative cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 35_Patient 7 negative cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 36_Patient 8 positive cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 36_Patient 8 positive cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 37_Patient 8 negative cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 37_Patient 8 negative cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 40_Patient 8 positive cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 40_Patient 8 positive cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 41_Patient 8 negative cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 41_Patient 8 negative cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 42_Patient 9 positive cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 42_Patient 9 positive cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 6_Patient 2 positive cells after OIT

text: Homo sapiens

text: Homo sapiens

text: 6_Patient 2 positive cells after OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 8_Patient 3 positive cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 8_Patient 3 positive cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: 9_Patient 3 negative cells before OIT

text: Homo sapiens

text: Homo sapiens

text: 9_Patient 3 negative cells before OIT


text: Pattraporn Satitsuksanoa

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: MPI-EVA

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: public

tag: Namespace:Berlin Institute for Medical Systems Biology, Max Delbruck Center for Molecular Medicine, Berlin, Germany

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron of crebral cortex

text: house mouse

text: Protocols: Primary cortical neurons were prepared from P0 mouse pups (C57B/6), and cultured as previously described (Kaech, 2006). 106 primary neurons were plated per a Millicell cell culture insert (6-well, Millipore MCRP06H48), coated with poly-D-Lysine and laminin. Separation into soma and neurites was performed using a cotton swab as described (Zappulo, 2017) and further separation of soma on nuclear and cytoplasmic fractions was performed using NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo 78833) following manufacturer’s instructions. Primary cortical were grown in the presence of 200nM 4-thiouridine (s4U) for 24 hours, then s4U was replaced with an excess (20mM) of unmodified uridine (U) and RNA was isolated at the indicated time points, where 0 hours is the time of s4U withdrawal. Isolated RNA was subjected to alkylation by heating to 50°C in the presence of 50 µg/µl Iodoacetamide for 15 min and cleaned up using Ampure beads. RNA was extracted from Trifast using 2-step chloroform extraction and isopropanol precipitation. After alkylation and an additional RNA cleanup step using Ampure beads RNA samples were quantified using qubit and analysed for integrity with tapestation. TrueSeq stranded mRNA Library kit; 1ul of 1:300 ERCC1 spike-in was added to 49ul initial solution with 100ng total RNA.; Final PCR was done with 13-17 cycles’ reaction

text: neonate

characteristic: developmental stage

text: soma-cytoplasm

characteristic: fraction

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Berlin Institute for Medical Systems Biology, Max Delbruck Center for Molecular Medicine, Berlin, Germany

text: public

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: soma-cytoplasm

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: mixed

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

text: neonate

text: nucleus

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: mixed


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron of crebral cortex

text: house mouse

text: neonate

characteristic: developmental stage

text: neurite

characteristic: fraction

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

characteristic: common name

text: Protocols: Primary cortical neurons were prepared from P0 mouse pups (C57B/6), and cultured as previously described (Kaech, 2006). 106 primary neurons were plated per a Millicell cell culture insert (6-well, Millipore MCRP06H48), coated with poly-D-Lysine and laminin. Infection with lentiviral particles was at DIV5 and cells were harvested 72 hours later (DIV9). Separation into soma and neurites was performed using a cotton swab as described (Zappulo, 2017) and further separation of soma on nuclear and cytoplasmic fractions was performed using NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo 78833) following manufacturer’s instructions. RNA was extracted from Trifast using 2-step chloroform extraction and isopropanol precipitation. RNA samples were quantified using qubit and analysed for integrity with tapestation. Good separation was verified by RT-qPCR. TrueSeq stranded mRNA Library kit; 1ul of 1:300 ERCC1 spike-in was added to 49ul initial solution with 150ng total RNA.; Final PCR was done with 12-16 cycles’ reaction

text: neonate

text: neurite

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

characteristic: description

text: neonate

text: soma-cytoplasm

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: mixed

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron of crebral cortex

text: house mouse

text: Protocols: Primary cortical neurons were prepared from P0 mouse pups (C57B/6), and cultured as previously described (Kaech, 2006). 106 primary neurons were plated per a Millicell cell culture insert (6-well, Millipore MCRP06H48), coated with poly-D-Lysine and laminin. Infection with lentiviral particles was at DIV5 and cells were harvested 72 hours later (DIV9). Separation into soma and neurites was performed using a cotton swab as described (Zappulo, 2017) and further separation of soma on nuclear and cytoplasmic fractions was performed using NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo 78833) following manufacturer’s instructions. RNA was extracted from Trifast using 2-step chloroform extraction and isopropanol precipitation. RNA samples were quantified using qubit and analysed for integrity with tapestation. Good separation was verified by RT-qPCR. TrueSeq stranded mRNA Library kit; 1ul of 1:300 ERCC1 spike-in was added to 49ul initial solution with 100ng total RNA.; Final PCR was done with 15-18 cycles’ reaction

text: neonate

text: soma-cytoplasm

text: dnCaf1 overexpression

characteristic: genetic modification

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

text: neonate

characteristic: developmental stage

text: nucelus

characteristic: fraction

text: dnCaf1 overexpression

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: mixed


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: nucleus

text: dnCaf1 overexpression

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

text: neonate

text: neurite

text: dnCaf1 overexpression

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: mixed

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: neuron of crebral cortex

text: house mouse

text: neonate

characteristic: developmental stage

text: soma-cytoplasm

characteristic: fraction

text: GFP expression only

characteristic: genetic modification

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: mixed


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: nucleus

text: GFP expression only

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: mixed


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: neuron of crebral cortex

text: house mouse

text: neonate

text: neurite

text: GFP expression only

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain


E-MTAB-12901:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VANDERBILT UNIVERSITY

text: public

text: E-MTAB-12901:Sample 12

tag: Namespace:VANDERBILT UNIVERSITY

unit: month

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: Protocols: brain tissue were dissected from zebrafish and snap frozen until RNA isolation Trizol + zymo RNA clean column kit TruSeq RNA sample prep kit (Illumina) to prepare cDNA libraries after Poly(A) selection

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: abcb4 -/-

text: Danio rerio

characteristic: organism

text: Danio rerio

text: brain

text: Danio rerio

text: female

text: AB

text: Sample 12

characteristic: title


E-MTAB-12901:Sample 4

characteristic: External Id

text: VANDERBILT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12901:Sample 4

text: ArrayExpress

text: zebrafish

characteristic: common name

characteristic: description

text: adult

text: normal

text: abcb4 -/-

characteristic: genotype

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: female

text: AB

text: Sample 4


E-MTAB-12901:Sample 5

text: VANDERBILT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12901:Sample 5

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: zebrafish

text: adult

text: normal

text: abcb4 -/-

text: Danio rerio

text: Danio rerio

text: brain

characteristic: organism part

text: Danio rerio

text: female

text: AB

text: Sample 5


E-MTAB-12901:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VANDERBILT UNIVERSITY

text: public

text: E-MTAB-12901:Sample 10

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: adult

text: normal

text: abcb4 -/-

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: female

characteristic: sex

text: AB

characteristic: strain

text: Sample 10


E-MTAB-12901:Sample 11

characteristic: External Id

text: VANDERBILT UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12901:Sample 11

text: ArrayExpress

text: zebrafish

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: abcb4 -/-

text: Danio rerio

characteristic: organism

text: Danio rerio

text: brain

text: Danio rerio

text: female

text: AB

text: Sample 11

characteristic: title


E-MTAB-12901:Sample 9

text: VANDERBILT UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12901:Sample 9

text: ArrayExpress

text: zebrafish

characteristic: common name

characteristic: description

text: adult

text: normal

text: abcb4 -/-

characteristic: genotype

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: female

text: AB

text: Sample 9


E-MTAB-12901:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VANDERBILT UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-12901:Sample 1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: zebrafish

text: adult

text: normal

text: wild type genotype

text: Danio rerio

text: Danio rerio

text: brain

characteristic: organism part

text: Danio rerio

text: female

text: AB

text: Sample 1


E-MTAB-12901:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VANDERBILT UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12901:Sample 2

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: adult

text: normal

text: wild type genotype

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: female

characteristic: sex

text: AB

characteristic: strain

text: Sample 2


E-MTAB-12901:Sample 3

text: VANDERBILT UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12901:Sample 3

text: ArrayExpress

text: zebrafish

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: brain

text: Danio rerio

text: female

text: AB

text: Sample 3

characteristic: title


E-MTAB-12901:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VANDERBILT UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-12901:Sample 6

text: ArrayExpress

text: zebrafish

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: female

text: AB

text: Sample 6


E-MTAB-12901:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VANDERBILT UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-12901:Sample 7

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: zebrafish

text: adult

text: normal

text: wild type genotype

text: Danio rerio

text: Danio rerio

text: brain

characteristic: organism part

text: Danio rerio

text: female

text: AB

text: Sample 7


E-MTAB-12901:Sample 8

text: VANDERBILT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12901:Sample 8

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: adult

text: normal

text: wild type genotype

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: female

characteristic: sex

text: AB

characteristic: strain

text: Sample 8


E-MTAB-12897:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KING'S COLLEGE LONDON

text: public

text: E-MTAB-12897:Sample 1

tag: Namespace:KING'S COLLEGE LONDON

unit: year

text: ArrayExpress

text: keratinocyte

text: human

text: Protocols: RNA samples are tested for quality and concentration prior to submission to Lexogen. RNA from keratinocyte cell lines are extracted using Qiagen RNA extraction kit. Once RNA is obtained the volume of the samples are checked using Qubit and Bioanalyzer. Library was performed by Lexogen using the Quantseq-3' library.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of abdomen

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-12897:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KING'S COLLEGE LONDON

text: public

characteristic: INSDC status

text: E-MTAB-12897:Sample 2

text: ArrayExpress

text: keratinocyte

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin of abdomen

text: Homo sapiens

text: Sample 2


E-MTAB-12897:Sample 3

text: KING'S COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-12897:Sample 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: keratinocyte

text: human

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of abdomen

characteristic: organism part

text: Homo sapiens

text: Sample 3


E-MTAB-12897:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KING'S COLLEGE LONDON

characteristic: INSDC last update

text: public

text: E-MTAB-12897:Sample 4

text: ArrayExpress

characteristic: broker name

text: keratinocyte

text: human

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of abdomen

text: Homo sapiens

text: Sample 4


E-MTAB-12897:Sample 5

text: KING'S COLLEGE LONDON

text: public

text: E-MTAB-12897:Sample 5

text: ArrayExpress

text: keratinocyte

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of abdomen

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-12897:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KING'S COLLEGE LONDON

text: public

characteristic: INSDC status

text: E-MTAB-12897:Sample 6

text: ArrayExpress

text: keratinocyte

text: human

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of abdomen

text: Homo sapiens

text: Sample 6


E-MTAB-12897:Sample 7

text: KING'S COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12897:Sample 7

text: ArrayExpress

text: keratinocyte

text: human

characteristic: description

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin of abdomen

text: Homo sapiens

text: Sample 7


E-MTAB-12897:Sample 8

text: KING'S COLLEGE LONDON

text: public

characteristic: SRA accession

text: E-MTAB-12897:Sample 8

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: keratinocyte

text: human

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of abdomen

characteristic: organism part

text: Homo sapiens

text: Sample 8


E-MTAB-12897:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KING'S COLLEGE LONDON

characteristic: INSDC last update

text: public

text: E-MTAB-12897:Sample 9

text: ArrayExpress

characteristic: broker name

text: keratinocyte

text: human

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of abdomen

text: Homo sapiens

text: Sample 9


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CUSB-HM

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127861

text: human biome

characteristic: broad-scale environmental context

characteristic: collection date

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bronchoalveolar Lavage

characteristic: host body product

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Lung

characteristic: local environmental context

text: Homo sapiens

text: Azithromycin resistance BAL

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127862

characteristic: Submitter Id

text: human biome

text: human

characteristic: common name

text: Bronchoalveolar Lavage

characteristic: description

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

characteristic: organism

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CUSB-HM

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127863

text: human biome

characteristic: broad-scale environmental context

characteristic: collection date

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127864

text: human biome

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

characteristic: host body product

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Lung

characteristic: local environmental context

text: Homo sapiens

text: Azithromycin resistance BAL

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CUSB-HM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127865

characteristic: Submitter Id

text: human biome

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: Bronchoalveolar Lavage

characteristic: description

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

characteristic: organism

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127866

text: human biome

characteristic: collection date

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CUSB-HM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127867

text: human biome

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

characteristic: host body product

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Lung

characteristic: local environmental context

text: Homo sapiens

text: Azithromycin resistance BAL

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127868

characteristic: Submitter Id

text: human biome

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: Bronchoalveolar Lavage

characteristic: description

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

characteristic: organism

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CUSB-HM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:985-127869

text: human biome

characteristic: collection date

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:986-127870

text: human biome

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

characteristic: host body product

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Lung

characteristic: local environmental context

text: Homo sapiens

text: Azithromycin resistance BAL

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CUSB-HM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:986-127871

characteristic: Submitter Id

text: human biome

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: Bronchoalveolar Lavage

characteristic: description

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

characteristic: organism

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:986-127872

text: human biome

characteristic: collection date

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bronchoalveolar Lavage

text: metagenome

text: Lung

text: Homo sapiens

text: Azithromycin resistance BAL

text: Homo sapiens

text: Illumina Miseq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CUSB-HM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:986-127873

text: human biome

text: human

text: Bronchoalveolar Lavage

text: Bronchoalveolar Lavage

text: United Kingdom

text: Bronchoalveolar Lavage

characteristic: host body product

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Lung

characteristic: local environmental context

text: Homo sapiens

text: Azithromycin resistance BAL

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CUSB-HM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-04-05-2023-14:46:14:986-127874

characteristic: Submitter Id

text: human biome

characteristic: broad-scale environmental context

text: human

characteristic: common name

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