text: Institut Pasteur du Cambodge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Institut Pasteur du Cambodge

text: MBL-IPC

text: Salmonella enterica subsp. enterica serovar Typhi isolate RES21-0039

characteristic: description

text: Cambodia

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human clinical sample

text: 11.580543, 104.916724

text: Typhi


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut Pasteur du Cambodge

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MBL-IPC

characteristic: collection date

text: Salmonella enterica subsp. enterica serovar Typhi isolate RES21-0042

text: Cambodia

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human clinical sample

text: 11.580543, 104.916725

characteristic: organism

text: Typhi

characteristic: serovar

characteristic: title


text: Institut Pasteur du Cambodge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: MBL-IPC

text: Salmonella enterica subsp. enterica serovar Typhi isolate RES21-0046

characteristic: description

text: Cambodia

text: diseased

text: Homo sapiens

text: Human clinical sample

text: 11.580543, 104.916726

text: Typhi


text: Institut Pasteur du Cambodge

text: public

text: MBL-IPC

text: Salmonella enterica subsp. enterica serovar Typhi isolate RES21-0048

text: Cambodia

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human clinical sample

text: 11.580543, 104.916727

text: Typhi


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institut Pasteur du Cambodge

text: public

text: MBL-IPC

text: Salmonella enterica subsp. enterica serovar Typhi isolate RES21-0049

text: Cambodia

text: diseased

text: Homo sapiens

text: Human clinical sample

text: 11.580543, 104.916728

text: Typhi


characteristic: External Id

text: Institut Pasteur du Cambodge

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SHCH

text: Salmonella enterica subsp. enterica serovar Typhi isolate EM170043

text: Cambodia

text: diseased

text: Homo sapiens

text: Human clinical sample

text: 11.580543, 104.916729

text: Typhi


text: Institut Pasteur du Cambodge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SHCH

characteristic: collection date

text: Salmonella enterica subsp. enterica serovar Typhi isolate EM170063

text: Cambodia

text: diseased

text: Homo sapiens

text: Human clinical sample

text: 11.580543, 104.916730

text: Typhi


text: public

tag: Namespace:Swiss Tropical and Public Health Institute

text: SwissTPH

text: Georgia

characteristic: geographic location (country and/or sea)

text: Homo Sapiens

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis


text: Swiss Tropical and Public Health Institute

characteristic: INSDC first public

text: public

text: SwissTPH

text: Georgia

text: Homo Sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title


text: GSC

characteristic: INSDC last update

text: public

text: missing: data agreement established pre-2023

text: European beech

characteristic: common name

text: France

text: Fagus sylvatica

text: Fagus sylvatica


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: UNIVERSITY OF OXFORD

characteristic: barcoding center

text: COPO

characteristic: broker name

text: Kilias

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Oxford|Zoology Department

characteristic: geographic location (region and locality)

text: Freshwater

characteristic: habitat

text: Fellows

text: NOT PROVIDED

text: vegetative cell

characteristic: lifestage

text: Staurastrum polymorphum

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: United Kingdom | England | Cumbria | Blelham Tarn

characteristic: original collection location

text: DTOL

characteristic: project name

characteristic: proxy voucher

characteristic: proxy voucher url

text: NOT PROVIDED

characteristic: sample collection device or method

text: Staurastrum polymorphum

text: NOT APPLICABLE

characteristic: sex

characteristic: specimen voucher url

text: 83953b01-eae3-4795-ab40-6001d9fb1515-DTOL-specimen

characteristic: tolid

characteristic: voucher institution url

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European Institute of Oncology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:European Institute of Oncology

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

text: scRNA-Seq

characteristic: description

text: 4 - 5 months

text: Italy

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: organism

text: Mus musculus

text: M

characteristic: strain

text: scRNA-Seq Accession SD_rep1

characteristic: title


characteristic: ENA-CHECKLIST

text: European Institute of Oncology

text: public

text: house mouse

text: scRNA-Seq

text: 4 - 5 months

text: Italy

text: Mus musculus

text: Mus musculus

text: M

characteristic: sex

text: scRNASeq Accession SD_rep2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Institute of Oncology

text: public

text: house mouse

text: scRNA-Seq

text: 4 - 5 months

text: Italy

text: Mus musculus

text: Mus musculus

text: M

text: scRNA-Seq Accession CR_rep1


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: INSDC center name

text: public

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: INSDC center name

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

text: not provided


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: GISAID Accession ID

characteristic: INSDC center name

text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: not provided

text: Portugal

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Universitat Pompeu Fabra

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:Universitat Pompeu Fabra

characteristic: Submitter Id

text: human

characteristic: description

text: Spain

text: Homo sapiens

text: Homo sapiens


text: UCSDMI

text: public

text: qiita_sid_14784:14784.CUL.1.Celomic.fluid

characteristic: collection date

text: Puerto Rico

characteristic: country

text: sea urchin coelomic fluid

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Culebra

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: Dead

text: Diadema antillarum

characteristic: host scientific name

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

characteristic: latitude

text: Culebra

characteristic: location

characteristic: longitude

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome

text: Microbiota associated with the 2022 Diadema antillarum die-off in Puerto Rico


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14784:14784.CUL.1.Celomic.fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Culebra

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Culebra

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Puerto Rico

text: sea urchin gut

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: Puerto Rico:Culebra

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: gut

text: sea urchin

text: cm

text: Culebra

text: sea urchin metagenome

characteristic: organism

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin gut

text: sea urchin gut

text: sea urchin metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_14784:14784.CUL.2.Celomic.Fluid

characteristic: collection date

text: Puerto Rico

characteristic: country

text: sea urchin coelomic fluid

characteristic: description

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Culebra

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Culebra

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_14784:14784.CUL.2.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Culebra

text: Puerto Rico

text: Dead

text: Diadema antillarum

characteristic: host scientific name

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

characteristic: latitude

text: Culebra

characteristic: location

characteristic: longitude

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiita_sid_14784:14784.CUL.3.Celomic.Fluid

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Culebra

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Culebra

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_14784:14784.CUL.3.Celomic.Fluid.R

characteristic: Submitter Id

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Culebra

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Culebra

text: sea urchin metagenome

characteristic: organism

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.1.Celomic.Fluid

characteristic: collection date

text: Puerto Rico

characteristic: country

text: sea urchin coelomic fluid

characteristic: description

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: healthy

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.1.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: healthy

text: Diadema antillarum

characteristic: host scientific name

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

characteristic: latitude

text: Escambron

characteristic: location

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

text: public

text: Puerto Rico

text: sea urchin gut

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: healthy

text: Diadema antillarum

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: gut

text: sea urchin

text: cm

text: Escambron

characteristic: longitude

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin gut

text: sea urchin gut

text: sea urchin metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Puerto Rico

text: sea urchin gut

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: healthy

text: Diadema antillarum

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: gut

text: sea urchin

text: cm

text: Escambron

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin gut

text: sea urchin gut

text: sea urchin metagenome


text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.2.Celomic.Fluid

characteristic: collection date

text: Puerto Rico

characteristic: country

text: sea urchin coelomic fluid

characteristic: description

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: healthy

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

text: sea urchin metagenome

characteristic: organism

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.2.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: healthy

text: Diadema antillarum

characteristic: host scientific name

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

characteristic: latitude

text: Escambron

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

text: public

text: qiita_sid_14784:14784.ESC.3.Celomic.Fluid

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: healthy

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

characteristic: location

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_14784:14784.ESC.3.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: healthy

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

characteristic: longitude

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.D.1.Celomic.Fluid

characteristic: Submitter Id

characteristic: collection date

text: Puerto Rico

characteristic: country

text: sea urchin coelomic fluid

characteristic: description

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.D.1.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: Dead

text: Diadema antillarum

characteristic: host scientific name

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

characteristic: latitude

text: Escambron

text: sea urchin metagenome

characteristic: organism

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

text: public

text: Puerto Rico

text: sea urchin gut

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: gut

text: sea urchin

text: cm

text: Escambron

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin gut

text: sea urchin gut

text: sea urchin metagenome

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Puerto Rico

text: sea urchin gut

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: gut

text: sea urchin

text: cm

text: Escambron

characteristic: location

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin gut

text: sea urchin gut

text: sea urchin metagenome


text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.D.2.Celomic.Fluid

characteristic: Submitter Id

characteristic: collection date

text: Puerto Rico

characteristic: country

text: sea urchin coelomic fluid

characteristic: description

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

characteristic: longitude

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.D.2.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: Dead

text: Diadema antillarum

characteristic: host scientific name

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

characteristic: latitude

text: Escambron

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

text: public

text: qiita_sid_14784:14784.ESC.D.3.Celomic.Fluid

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

text: sea urchin metagenome

characteristic: organism

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_14784:14784.ESC.D.3.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome

characteristic: title

text: Microbiota associated with the 2022 Diadema antillarum die-off in Puerto Rico


text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.D.4.Celomic.Fluid

characteristic: Submitter Id

characteristic: collection date

text: Puerto Rico

characteristic: country

text: sea urchin coelomic fluid

characteristic: description

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

text: Dead

text: Diadema antillarum

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

characteristic: location

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_14784:14784.ESC.D.4.Celomic.Fluid.R

text: Puerto Rico

text: sea urchin coelomic fluid

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal proximal gut (saline)

text: marine biome

text: animal-associated habitat

text: interstitial fluid material

text: host-associated

text: Puerto Rico:Escambron

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: Dead

text: Diadema antillarum

characteristic: host scientific name

text: UBERON:multicellular organism

text: UBERON:coelomic fluid

text: UBERON:multicellular organism

text: sea urchin

text: cm

text: Escambron

characteristic: longitude

text: sea urchin metagenome

text: LAB B316 UPR MICROBIOME LAB

text: FALSE

text: sea urchin coelomic fluid

text: sea urchin coelomic fluid

text: sea urchin metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: SC

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: Northern Ireland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collection date

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Laboratory Medicine, Yonsei University College of Medicine, Seoul, Republic of Korea

unit: year

characteristic: age

text: ArrayExpress

text: circulating tumor cell

text: individual with suspicious ovarian mass

characteristic: clinical information

text: not collected

text: human

characteristic: common name

text: Protocols: For each sampling time point, whole blood (9 mL) was collected in cfDNA collection tubes (Dxome, Seongnam, Republic of Korea). Cell-free DNA (cfDNA) was extracted from plasma samples (3–4 mL) using the Magnetic Serum/Plasma Circulating DNA Kit (Dxome, Seongnam, Republic of Korea). The size of the cfDNA was measured using TapeStation 4200 (Agilent Technologies, Santa Clara, CA, USA). cfDNA concentration was measured using a Qubit 3.0 Fluorometer (Thermo Fisher Scientific, Waltham, MA, USA). The resulting DNA was ligated using Illumina adapters and then indexed using unique dual indices for duplex sequencing (Illumina, San Diego, CA, USA). Sequencing libraries were hybridized with customized probes targeting nine ovarian cancer-related genes (TP53, BRCA1, BRCA2, ARID1A, CCNE1, KRAS, MYC, PIK3CA, and PTEN), which are frequently mutated in ovarian cancer.

text: adult

characteristic: developmental stage

text: mucinuous carcinoma

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Laboratory Medicine, Yonsei University College of Medicine, Seoul, Republic of Korea

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: circulating tumor cell

text: individual with suspicious ovarian mass

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

text: benign, borderline

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: circulating tumor cell

text: individual with suspicious ovarian mass

characteristic: clinical information

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: low-grade serous carcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: ArrayExpress

text: circulating tumor cell

text: individual with suspicious ovarian mass

text: not collected

text: human

text: adult

text: clear cell carcinoma

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: circulating tumor cell

text: individual with suspicious ovarian mass

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

text: high-grade serous carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: circulating tumor cell

text: individual with suspicious ovarian mass

characteristic: clinical information

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: mucinuous carcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: circulating tumor cell

text: individual with suspicious ovarian mass

text: not collected

text: human

text: adult

text: endometrioid

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: circulating tumor cell

text: individual with suspicious ovarian mass

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

text: undifferntiated

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: circulating tumor cell

text: individual with suspicious ovarian mass

characteristic: clinical information

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: granulosa cell tumor

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: circulating tumor cell

text: individual with suspicious ovarian mass

text: not collected

text: human

text: adult

text: dysgerminoma

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: sponge metagenome

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: d1b40dbf-a63b-43b5-a46f-0f34baa2261a-asg-metagenome

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Cenarchaeum sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Cenarchaeum sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 2f764ec7-af51-4385-8d21-3e84981af6d5-asg-MAGScoT_cleanbin_000026


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Pontimonas sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pontimonas sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 33d67cde-7ad5-4e5d-8a34-1fa1c5858c84-asg-MAGScoT_cleanbin_000024

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Flavobacteriaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Flavobacteriaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 940d9795-f63c-4631-b6d1-31c86bcf80e6-asg-MAGScoT_cleanbin_000011


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Bdellovibrionales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Bdellovibrionales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 8995631d-4fc7-4cb3-bb32-4e4f86190b1b-asg-MAGScoT_cleanbin_000015

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Prochloron sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Prochloron sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 7efb61e8-09df-47cf-a698-1991596f2d00-asg-MAGScoT_cleanbin_000025


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Lyngbya sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Lyngbya sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: f20493c1-1399-4ff1-87f2-dee8835f8161-asg-MAGScoT_cleanbin_000040

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Myxococcota bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Myxococcota bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 0219b3c0-d202-4f92-8be4-3b29ca5a9538-asg-MAGScoT_cleanbin_000012


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Pelagibacteraceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pelagibacteraceae bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: b264d93a-ce11-4780-bf1b-a28d5a4b91c0-asg-MAGScoT_cleanbin_000044

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Candidatus Puniceispirillum sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: b2f4f14a-535f-4be8-b0d0-44351b7c56f2-asg-MAGScoT_cleanbin_000021


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Arenicellales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Arenicellales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: c3225e76-b508-4974-a560-4eaac755f7b7-asg-MAGScoT_cleanbin_000005

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Arenicellales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Arenicellales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: acdb6947-b68f-41bd-be90-48ec12635fdb-asg-MAGScoT_cleanbin_000023


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Arenicellales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Arenicellales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 15a3f4d8-d29b-4823-adb2-a0ed139b5549-asg-MAGScoT_cleanbin_000031

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured candidatus Porisulfidus sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: uncultured candidatus Porisulfidus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: c2232563-58bf-4fbc-b949-a7f41344e568-asg-MAGScoT_cleanbin_000014


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Halieaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Halieaceae bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

text: taxonomic novelty determined using RED

text: 45e46a91-3396-40ec-b7fa-eab55e57d788-asg-MAGScoT_cleanbin_000029

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Halieaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Halieaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 9bbd560d-6ce0-4cb6-85d1-d88f7acc198b-asg-MAGScoT_cleanbin_000030


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Luminiphilus sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Luminiphilus sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: cac4ca04-3848-4430-aa32-e870c66311ad-asg-MAGScoT_cleanbin_000006

characteristic: title


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Luminiphilus sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Luminiphilus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 9a21b5aa-d324-4391-9abf-6c87bc1a27ca-asg-MAGScoT_cleanbin_000022


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Pseudomonadales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: ANI

text: 53ddee7a-19b2-43b1-a55a-730719b29f5b-asg-MAGScoT_cleanbin_000019

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: 070eee08-b81d-43af-a82b-44bd3627557e-asg-MAGScoT_cleanbin_000034


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Pseudomonadales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: ANI

text: 9182f071-fdd9-43fa-a87f-a6eaf15368ab-asg-MAGScoT_cleanbin_000035

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: a55d7c7c-15c0-4614-8954-545ca2a1d0fe-asg-MAGScoT_cleanbin_000037


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Pseudomonadales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: ANI

text: 54d2f50f-378e-4076-871a-5f8ee7c8e2dd-asg-MAGScoT_cleanbin_000042

characteristic: title


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

text: rocky bottom

text: adult

text: Axinella damicornis

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Axinella damicornis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: 83be5f82-4282-4cba-b3ad-b359e25333b4-asg-MAGScoT_cleanbin_000045


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Axinella damicornis

characteristic: host scientific name

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Axinella damicornis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Cenarchaeum sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

characteristic: sample derived from

text: Cenarchaeum sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: 4ff7226e-d404-4713-a4c1-108738a758ef-asg-MAGScoT_cleanbin_000017

characteristic: title