characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: T cell

text: house mouse

text: Protocols: CD4+CD25-CD44hiFR4-Egr2-/-Egr3-/- cells were isolated from Egr2/3 DKO mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intraperitoneally with 4 x 10^6 PFU of vaccinia virus. CD4 T cells were isolated 21 days after infection RNA was isolated and purified using the RNeasy UCP Micro Kit (Qiagen) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the KAPA mRNA HyperPrep Kit (Kapa Biosystems) in combination with IDT xGen UDI-UMI adapters (Integrated DNA Technologies) according to the manufacturers’ protocols

text: adult

text: hCD2-Cre Egr2loxP/loxP Egr3-/-

text: mixed pool from 10 mice

text: vaccinia virus

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed lymph node and spleen

text: Mus musculus

text: mixed

characteristic: sex

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:The Blizard Institute Barts and The London School of Medicine and Dentistry, Queen Mary, University of London

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: hCD2-Cre Egr2loxP/loxP Egr3-/-

characteristic: genotype

characteristic: immunophenotype

text: mixed pool from 10 mice

characteristic: individual

text: vaccinia virus

characteristic: infect

text: not applicable

text: Mus musculus

text: Mus musculus

text: mixed lymph node and spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: The Blizard Institute Barts and The London School of Medicine and Dentistry, Queen Mary, University of London

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: T cell

text: house mouse

text: Protocols: CD4+CD25-CD44hiFR4+Egr2+ cells were isolated from Egr2 Kin mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intraperitoneally with 4 x 10^6 PFU of vaccinia virus. CD4 T cells were isolated 21 days after infection RNA was isolated and purified using the RNeasy UCP Micro Kit (Qiagen) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the KAPA mRNA HyperPrep Kit (Kapa Biosystems) in combination with IDT xGen UDI-UMI adapters (Integrated DNA Technologies) according to the manufacturers’ protocols

text: adult

text: GFP-Egr2 knockin

text: mixed pool from 10 mice

text: vaccinia virus

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed lymph node and spleen

text: Mus musculus

text: mixed

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

characteristic: common name

text: Protocols: CD4+CD25-CD44hiFR4+Egr2- cells were isolated from Egr2 Kin mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intraperitoneally with 4 x 10^6 PFU of vaccinia virus. CD4 T cells were isolated 21 days after infection RNA was isolated and purified using the RNeasy UCP Micro Kit (Qiagen) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the KAPA mRNA HyperPrep Kit (Kapa Biosystems) in combination with IDT xGen UDI-UMI adapters (Integrated DNA Technologies) according to the manufacturers’ protocols

characteristic: description

text: adult

text: GFP-Egr2 knockin

text: mixed pool from 10 mice

text: vaccinia virus

text: not applicable

text: Mus musculus

text: Mus musculus

text: mixed lymph node and spleen

text: Mus musculus

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: Protocols: CD4+CD25-CD44hiFR4-Egr2- cells were isolated from Egr2 Kin mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intraperitoneally with 4 x 10^6 PFU of vaccinia virus. CD4 T cells were isolated 21 days after infection RNA was isolated and purified using the RNeasy UCP Micro Kit (Qiagen) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the KAPA mRNA HyperPrep Kit (Kapa Biosystems) in combination with IDT xGen UDI-UMI adapters (Integrated DNA Technologies) according to the manufacturers’ protocols

text: adult

characteristic: developmental stage

text: GFP-Egr2 knockin

characteristic: genotype

characteristic: immunophenotype

text: mixed pool from 10 mice

characteristic: individual

text: vaccinia virus

characteristic: infect

text: not applicable

text: Mus musculus

text: Mus musculus

text: mixed lymph node and spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: strain


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: title


characteristic: ENA-CHECKLIST

text: AARHUS UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:AARHUS UNIVERSITY

text: human

characteristic: common name

text: HACAT Cells un-infected (Mock) replicate 1

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: AARHUS UNIVERSITY

text: public

text: human

text: HACAT Cells un-infected (Mock) replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HACAT Cells infected with HSV1 4h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HACAT Cells infected with HSV1 4h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HACAT Cells infected with HSV1 12h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HACAT Cells infected with HSV1 12h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HACAT Cells infected with HSV1 24h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HACAT Cells infected with HSV1 24h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells un-infected (Mock) replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells un-infected (Mock) replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV1 4h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV1 4h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV1 12h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV1 12h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV1 24h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV1 24h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV2 4h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV2 4h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV2 12h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV2 12h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV2 24h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH-Sy5y Cells infected with HSV2 24h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells un-infected (Mock) replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells un-infected (Mock) replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV1 4h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV1 4h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV1 12h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV1 12h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV1 24h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV1 24h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV2 4h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV2 4h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV2 12h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV2 12h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV2 24h p.i. replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: THP1 Cells infected with HSV2 24h p.i. replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HIF knock-out SH cells upon ML228 treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HIF knock-out SH cells upon ML228 treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HIF knock-out SH cells upon ML228 treatment replicate 3

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HIF knock-out SH cells upon DMSO treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HIF knock-out SH cells upon DMSO treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: IRF1 knock-out SH cells upon ML228 treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: IRF1 knock-out SH cells upon ML228 treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: IRF1 knock-out SH cells upon ML228 treatment replicate 3

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: IRF1 knock-out SH cells upon DMSO treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: IRF1 knock-out SH cells upon DMSO treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: IRF1 knock-out SH cells upon DMSO treatment replicate 3

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: IRF1 knock-out SH cells upon DMSO treatment replicate 4

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: AAVS1 treated SH cells upon ML228 treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: AAVS1 treated SH cells upon ML228 treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: AAVS1 treated SH cells upon ML228 treatment replicate 3

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: AAVS1 treated SH cells upon DMSO treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: AAVS1 treated SH cells upon DMSO treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: AAVS1 treated SH cells upon DMSO treatment replicate 3

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV1 upon ML228 treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV1 upon ML228 treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV1 upon DMSO treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV1 upon DMSO treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV2 upon ML228 treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV2 upon ML228 treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV2 upon DMSO treatment replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: SH cells infected with HSV2 upon DMSO treatment replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons (uninfected-MOCK) replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons (uninfected-MOCK) replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons (uninfected-MOCK) replicate 3

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons infected with HSV1 replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons infected with HSV1 replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons infected with HSV1 replicate 3

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons infected with HSV2 replicate 1

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons infected with HSV2 replicate 2

text: Homo sapiens

text: Homo sapiens


text: AARHUS UNIVERSITY

text: public

text: human

text: HESC derived neurons infected with HSV2 replicate 3

text: Homo sapiens

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_KO_C_br1.fastq.gz

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Subcellular fractionation, RNA extraction and 3’end sequencing library preparation. For 3’end sequencing cells were fractionated into cytoplasm and nuclei and RNA was extracted separately. 10 million HEK 293 cells were mixed with 1 million MEF cells as a spike-in control, washed once in 1xPBS and resuspended in 1 mL hypotonic buffer (10 mM HEPES pH 7.9, 1.5 mM MgCl2, 10 mM KCl, 1 mM DTT, 1 mM PMSF, 0.1% Triton, 1x protease inhibitors). Cells were incubated on ice for 5 min, then dounced in a prechilled 7 mL Douncer for 10 strokes with a tight pestle to release nuclei. After centrifugation at 228g, 4°C for 5 min the supernatant was mixed with 200 µL 5x RIPA buffer (250 mM Tris pH 7.5, 750 mM NaCl, 5% NP-40, 2.5% deoxycholate, 1 mM PMSF, 0.1% Triton, 1x protease inhibitors) and centrifuged for 10 min at 2800g, 4°C. The supernatant was kept as the cytoplasmic fraction. The pellet from the first centrifugation step was resuspended in 600 µL sucrose buffer 1 (0.25 M sucrose, 10 mM MgCl2, 1 mM PMSF, 1x protease inhibitors) and layered over 600 µL sucrose buffer 2 (0.35 M sucrose, 0.5 mM MgCl2, 1mM PMSF, 1x protease inhibitors). After centrifugation at 1430g for 5 min, 4°C, the pellet (nuclei) was resuspended in 1 mL TRI reagent and processed for RNA extraction as described above. For RNA extraction from the cytoplasmic fraction, 300 µL cytoplasmic extract were mixed with 900 µL TRI reagent LS for liquid samples (Sigma), 240 µL chloroform was added and the lysate was vortexed and centrifuged at max. speed (21130g) for 15 min at 4°C. The aqueous layer was transferred to a new tube and precipitated with 0.6 mL isopropanol. The RNA pellet was subsequently treated as described above. Library preparation for 3’ end sequencing of polyadenylated mRNAs was performed using 3’ mRNA-Seq Library Prep Kit FWD (Lexogen) according to the manufacturer’s instructions.

text: PHF3 knockout

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_KO_C_br2.fastq.gz

text: ArrayExpress

text: human

text: PHF3 knockout

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens


characteristic: External Id

text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_KO_C_br3.fastq.gz

text: ArrayExpress

text: human

text: PHF3 knockout

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

characteristic: INSDC status

text: E-MTAB-12757:TPSeq_HEK_KO_N_br1.fastq.gz

text: ArrayExpress

text: human

text: PHF3 knockout

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

characteristic: SRA accession

text: E-MTAB-12757:TPSeq_HEK_KO_N_br2.fastq.gz

text: ArrayExpress

text: human

text: PHF3 knockout

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_KO_N_br3.fastq.gz

characteristic: Submitter Id

text: ArrayExpress

text: human

text: PHF3 knockout

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_SPOC_C_br1.fastq.gz

text: ArrayExpress

text: human

text: PHF3 dSPOC mutant

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_SPOC_C_br2.fastq.gz

text: ArrayExpress

text: human

text: PHF3 dSPOC mutant

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_SPOC_C_br3.fastq.gz

text: ArrayExpress

text: human

text: PHF3 dSPOC mutant

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens


text: BIMSB

characteristic: INSDC center name

text: public

text: E-MTAB-12757:TPSeq_HEK_SPOC_N_br1.fastq.gz

text: ArrayExpress

text: human

text: PHF3 dSPOC mutant

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

characteristic: INSDC first public

text: public

text: E-MTAB-12757:TPSeq_HEK_SPOC_N_br2.fastq.gz

text: ArrayExpress

text: human

text: PHF3 dSPOC mutant

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

characteristic: INSDC last update

text: public

text: E-MTAB-12757:TPSeq_HEK_SPOC_N_br3.fastq.gz

text: ArrayExpress

text: human

text: PHF3 dSPOC mutant

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_WT_C_br1.fastq.gz

text: ArrayExpress

text: human

characteristic: common name

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_WT_C_br2.fastq.gz

text: ArrayExpress

text: human

characteristic: description

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_WT_C_br3.fastq.gz

text: ArrayExpress

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: C-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_WT_N_br1.fastq.gz

text: ArrayExpress

characteristic: broker name

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_WT_N_br2.fastq.gz

text: ArrayExpress

text: human

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

text: Homo sapiens


text: BIMSB

text: public

text: E-MTAB-12757:TPSeq_HEK_WT_N_br3.fastq.gz

text: ArrayExpress

text: human

text: Protocols: Subcellular fractionation, RNA extraction and 3’end sequencing library preparation. For 3’end sequencing cells were fractionated into cytoplasm and nuclei and RNA was extracted separately. 10 million HEK 293 cells were mixed with 1 million MEF cells as a spike-in control, washed once in 1xPBS and resuspended in 1 mL hypotonic buffer (10 mM HEPES pH 7.9, 1.5 mM MgCl2, 10 mM KCl, 1 mM DTT, 1 mM PMSF, 0.1% Triton, 1x protease inhibitors). Cells were incubated on ice for 5 min, then dounced in a prechilled 7 mL Douncer for 10 strokes with a tight pestle to release nuclei. After centrifugation at 228g, 4°C for 5 min the supernatant was mixed with 200 µL 5x RIPA buffer (250 mM Tris pH 7.5, 750 mM NaCl, 5% NP-40, 2.5% deoxycholate, 1 mM PMSF, 0.1% Triton, 1x protease inhibitors) and centrifuged for 10 min at 2800g, 4°C. The supernatant was kept as the cytoplasmic fraction. The pellet from the first centrifugation step was resuspended in 600 µL sucrose buffer 1 (0.25 M sucrose, 10 mM MgCl2, 1 mM PMSF, 1x protease inhibitors) and layered over 600 µL sucrose buffer 2 (0.35 M sucrose, 0.5 mM MgCl2, 1mM PMSF, 1x protease inhibitors). After centrifugation at 1430g for 5 min, 4°C, the pellet (nuclei) was resuspended in 1 mL TRI reagent and processed for RNA extraction as described above. For RNA extraction from the cytoplasmic fraction, 300 µL cytoplasmic extract were mixed with 900 µL TRI reagent LS for liquid samples (Sigma), 240 µL chloroform was added and the lysate was vortexed and centrifuged at max. speed (21130g) for 15 min at 4°C. The aqueous layer was transferred to a new tube and precipitated with 0.6 mL isopropanol. The RNA pellet was subsequently treated as described above. Library preparation for 3’ end sequencing of polyadenylated mRNAs was performed using 3’ mRNA-Seq Library Prep Kit FWD (Lexogen) according to the manufacturer’s instructions.

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: N-terminal localisation

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Department of Biological Sciences University of Bergen, Bergen, Norway

text: ArrayExpress

text: Atlantic cod

text: Protocols: Atlantic cod (G. morhua) were purchased from Havbruksstasjonen in Tromsø AS (Nofima, Tromsø, Norway) and kept in 500 L tanks in 10°C, 34 ppt seawater with a 12 h light/l2 h dark cycle at the Industrial and Aquatic Laboratory (Bergen, Norway). The fish, approximately 1.5 years old, body weight (bw) 332  69g (mean  standard deviation/) were fed with a commercial diet (Amber Neptune, Skretting, Stavanger, Norway) until the start of the treatment. The fish were not fed during exposure. In this experiment (Experiment 1), the exposure groups consisted of vehicle control, low, medium or high doses of each of EE2, BPA and MXC. Each of the compounds EE2, BPA and MXC were dissolved in vehicle (1% DMSO, 25% kolliphor in PBS) and injected at low, medium or high doses of EE2: 10, 50 or 250 nanomole (nmol)/kg body weight (bw); BPA: 8, or 40 micromole (μmol)/kg bw; and MXC: 8 or 40 μmol/kg bw. Sampling was performed 3 days after injection by killing the fish with a blow to the head. Biometric data, body weight, liver weight, gonadal weight, body length, and sex were registered. After dissection of each fish, a small piece pf liver tissue was sampled and the whole pituitary gland was dissected and snap-frozen individually in liquid nitrogen and stored at -80 °C until RNA extraction. Total RNA extraction from each frozen pituitary was performed using TRI Reagent (Sigma) according to the manufacturer’s protocols. The concentration and quality of total RNA was assessed using a NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies, Wilmington, DE, USA), and the Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA). For experiment 1, a total of 40 pituitary samples (n = 4-6 per group) were analyzed. RNA sequencing was performed at the Genomics Core Facility at the University of Bergen, as previously described (Yadetie et al., 2018). RNA samples from individual pituitary samples (0.4 μg total RNA per sample) were sequenced according to Illumina TruSeq® Stranded mRNA Sample Preparation Guide on Illumina HiSeq 4000 (Illumina, Inc., San Diego, CA, USA).

text: juvenile stage

characteristic: developmental stage

characteristic: individual

text: Gadus morhua

text: Gadus morhua

text: pituitary gland

characteristic: organism part

text: Gadus morhua

text: female

characteristic: sex


characteristic: External Id

text: Department of Biological Sciences University of Bergen, Bergen, Norway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Atlantic cod

text: juvenile stage

text: Gadus morhua

characteristic: organism

text: Gadus morhua

text: pituitary gland

text: Gadus morhua

text: female


E-MTAB-12747:Sample 10

characteristic: ENA-CHECKLIST

text: SAARLAND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12747:Sample 10

tag: Namespace:SAARLAND UNIVERSITY

text: ArrayExpress

text: human

text: Protocols: Adherent cells were harvested in Trizol reagent NA Trizol protocol according to manufactorer's guidelines. At least 800 ng RNA was sent for Quality control and RNA Sequencing Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers,followed by the second strand cDNA synthesis using either dUTP for directional library or dTTP for non-directional library (for further information check Novogene RNA seq protocols).

text: embryo

text: normal

characteristic: disease

text: CRISPR-Cas 9 gene deletion STIM1 and STIM

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 10

characteristic: title


E-MTAB-12747:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SAARLAND UNIVERSITY

text: public

text: E-MTAB-12747:Sample 1

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: juvenile stage

text: neuroblastoma

text: CRISPR-Cas 9 gene deletion STIM1 and STIM2

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone

text: Homo sapiens

text: Sample 1


E-MTAB-12747:Sample 2

characteristic: External Id

text: SAARLAND UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-12747:Sample 2

text: ArrayExpress

text: human

text: juvenile stage

characteristic: developmental stage

text: neuroblastoma

text: CRISPR-Cas9 transfected with no gRNA

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone

characteristic: organism part

text: Homo sapiens

text: Sample 2


E-MTAB-12747:Sample 3

characteristic: ENA-CHECKLIST

text: SAARLAND UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-12747:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: human

text: juvenile stage

text: neuroblastoma

text: CRISPR-Cas9 transfected with no gRNA

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone

text: Homo sapiens

text: Sample 3


E-MTAB-12747:Sample 4

text: SAARLAND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12747:Sample 4

text: ArrayExpress

text: human

text: juvenile stage

text: neuroblastoma

characteristic: disease

text: stable overexpression of STIM2.3

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone

text: Homo sapiens

text: Sample 4


E-MTAB-12747:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SAARLAND UNIVERSITY

text: public

text: E-MTAB-12747:Sample 5

text: ArrayExpress

text: human

text: juvenile stage

text: neuroblastoma

text: CRISPR-Cas 9 gene deletion STIM2 clone 4_1

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: bone

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-12747:Sample 6

text: SAARLAND UNIVERSITY

text: public

text: E-MTAB-12747:Sample 6

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: juvenile stage

text: neuroblastoma

text: CRISPR-Cas 9 gene deletion STIM2 clone 4_2

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone

text: Homo sapiens

text: Sample 6


E-MTAB-12747:Sample 7

characteristic: External Id

text: SAARLAND UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-12747:Sample 7

text: ArrayExpress

text: human

text: juvenile stage

characteristic: developmental stage

text: neuroblastoma

text: CRISPR-Cas 9 gene deletion STIM2 clone 7_1

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone

characteristic: organism part

text: Homo sapiens

text: Sample 7


E-MTAB-12747:Sample 8

characteristic: ENA-CHECKLIST

text: SAARLAND UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-12747:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: human

text: juvenile stage

text: neuroblastoma

text: CRISPR-Cas 9 gene deletion STIM2 clone 7_2

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone

text: Homo sapiens

text: Sample 8


E-MTAB-12747:Sample 9

text: SAARLAND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12747:Sample 9

text: ArrayExpress

text: human

text: juvenile stage

text: neuroblastoma

characteristic: disease

text: CRISPR-Cas 9 gene deletion STIM2 clone 8

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone

text: Homo sapiens

text: Sample 9


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Instituto de Investigacion Biosanitaria del Principado de Asturias (ISPA)

text: human

text: CD34+ CB cells rearranged i10 in vivo 1

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Instituto de Investigacion Biosanitaria del Principado de Asturias (ISPA)

text: public

text: human

characteristic: common name

text: CD34+ CB cells rearranged i12 in vivo 1

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: public

text: human

text: CD34+ CB cells rearranged i12 in vivo 2

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

text: human

text: CD34+ CB cells rearranged i12 in vivo 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i12 in vivo 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i12 in vivo 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i12 in vivo 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i10 in vivo 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i10 in vivo 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i10 in vitro 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i10 in vitro 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i10 in vitro 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i12 in vitro 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i12 in vitro 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ CB cells rearranged i12 in vitro 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i10 in vitro 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i10 in vitro 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i10 in vitro 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i12 in vitro 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i12 in vitro 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: CD34+ FL cells rearranged i12 in vitro 3

text: Homo sapiens

text: Homo sapiens


text: VISAVET Health Surveillance Centre UCM

text: public

text: ena-SAMPLE-TAB-14-03-2023-12:29:18:952-84172

tag: Namespace:VISAVET Health Surveillance Centre UCM

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Tursiops truncatus

characteristic: host scientific name

characteristic: isolate

text: Common bottlenose dolphin

text: Brucella pinnipedialis

text: Brucella pinnipedialis


characteristic: ENA-CHECKLIST

text: VISAVET Health Surveillance Centre UCM

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-03-2023-12:29:18:952-84173

characteristic: Submitter Id

text: Spain

text: not provided

text: Tursiops truncatus

text: Common bottlenose dolphin

text: Brucella pinnipedialis

characteristic: organism

text: Brucella pinnipedialis


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:The First Affiliated Hospital, Jinan University, Guangzhou, Guangdong, P. R. China

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Serum samples from 7 GC patients and 2 healthy controls (HC) who had no history of basic or chronic diseases, and 36 tumor tissues and matched adjacent non-tumor tissues from GC patients who did not receive radiotherapy and chemotherapy before surgery were collected from the First Affiliated Hospital of Jinan University. Samples were stored at −80°C until use. Exosomes were first isolated from serum using the ExoQuick™ (SBI, USA) according to the manufacturer’s instructions. Briefly, 300 μl of cell-free serum samples were moved into a tube and mixed with 75 μl of ExoQuick reagent. Next, the mixture was incubated at 4°C overnight and then centrifuged at 1500 g for 30 min. Then, the pelleted exosomes were re-suspended in 40 μl PBS. Finally, RNA of exosomes was extracted with the miRNeasy micro kit (Qiagen, USA) based on the manufacturer’s instructions, and was subjected to next step. The clustering of the index-coded samples was first carried out on a cBot Cluster Generation System using TruSeq SR Cluster kit v3-cBot-HS (Illumina). Then, the libraries were sequenced and 50 bp single-end reads were generated. Next, clean data were acquired by eliminating the low quality reads and adaptors in HTseq-count (version 0.7.2), FastQC (version 0.11.7) and Trimmomatic (version 0.38) software.

text: adult

characteristic: developmental stage

text: gastric cancer

characteristic: disease

text: serum exosome

characteristic: fraction

text: S019_gencoding-A_TM-231_AHYYLKCCXY_S19_L005

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: stomach

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The First Affiliated Hospital, Jinan University, Guangzhou, Guangdong, P. R. China

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

text: gastric cancer

text: serum exosome

text: S020_gencoding-A_TM-232_AHYYLKCCXY_S20_L005

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: gastric cancer

text: serum exosome

text: S022_gencoding-A_TM-234_AHYYLKCCXY_S22_L005

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: stomach

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: adult

characteristic: developmental stage

text: gastric cancer

text: serum exosome

text: S023_gencoding-A_TM-235_AHYYLKCCXY_S23_L005

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: human

text: adult

text: gastric cancer

characteristic: disease

text: serum exosome

characteristic: fraction

text: S029_gencoding-A_TM243_AHYYLKCCXY_S29_L005_R1

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: stomach

characteristic: organism part

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

text: gastric cancer

text: serum exosome

text: S030_gencoding-A_TM244_AHYYLKCCXY_S30_L005

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: gastric cancer

text: serum exosome

text: S031_gencoding-A_TM245_AHYYLKCCXY_S31_L005

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Homo sapiens

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: normal

text: serum exosome

text: S018_gencoding-A_TM-229_AHYYLKCCXY_S18_L005

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: stomach

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: serum exosome

characteristic: fraction

text: S021_gencoding-A_TM-233_AHYYLKCCXY_S21_L005

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Homo sapiens


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


Grave 0

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: Grave 0

tag: Namespace:Institute of Clinical Molecular Biology (IKMB)

characteristic: Submitter Id

text: human

text: Archaic specimen (ancient DNA)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Grave 0


Grave 1

text: Institute of Clinical Molecular Biology (IKMB)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Grave 1

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 1

characteristic: title


Grave 2

characteristic: ENA-FIRST-PUBLIC

text: public

text: Grave 2

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Grave 2


Grave 3

text: public

text: Grave 3

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 3


Grave 4

text: public

text: Grave 4

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 4


Grave 5

text: public

text: Grave 5

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 5


Grave 6

text: public

text: Grave 6

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 6


Grave 7

text: public

text: Grave 7

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 7


Grave 8

text: public

text: Grave 8

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 8


Grave 9

text: public

text: Grave 9

text: human

text: Archaic specimen (ancient DNA)

text: Homo sapiens

text: Homo sapiens

text: Grave 9


characteristic: ENA first public

text: Michael

text: public

text: stiff brome

text: Brachypodium distachyon

text: Brachypodium distachyon


text: public

tag: Namespace:Max Planck Institute for Biology of Ageing

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Protocols: Liver specimen from 2 young and 2 old mice were cryopreserved and sections of 8 mm x 8 mm x 10μm specimens. Libraries were prepared using the Visium Spatial Gene Expression solution from 10x Genomics using 30 minutes permeabilization time. Libraries were prepared according to the manufacturer’s instruction

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Biology of Ageing

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male


text: Cell line

characteristic: ArrayExpress-PHENOTYPE

text: unknown

characteristic: ArrayExpress-SEX

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: Unknown

characteristic: GENDER

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Cell line

characteristic: PHENOTYPE

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: Cell Line

text: unknown

text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Unknown

text: SC

text: public

text: Cell Line

text: human

text: Homo sapiens

text: Homo sapiens


text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: aquatic biome

characteristic: broad-scale environmental context

text: SALLY LEYS

text: University of Alberta

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Edmonton | University of Alberta

characteristic: geographic location (region and locality)

text: freshwater culture dish

characteristic: habitat

text: Spongilla lacustris

characteristic: host scientific name

characteristic: host taxid

text: SALLY LEYS

text: University of Alberta

text: juvenile

characteristic: lifestage

text: freshwater lake biome

characteristic: local environmental context

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: sponge metagenome

text: NOT COLLECTED

characteristic: sex

text: 6b5dab10-4ebc-4dfc-98fd-631e437b143f-asg-metagenome

characteristic: tolid


text: Yes

characteristic: 16S recovered

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: coverage;graph

characteristic: binning parameters

text: MetaBat2_v2.15-15-gd6ea400;DASTOOL_v1.1.5

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: SALLY LEYS

characteristic: collected by

text: University of Alberta

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Canada

text: Edmonton | University of Alberta

text: freshwater culture dish

text: Spongilla lacustris

text: SALLY LEYS

characteristic: identified by

text: University of Alberta

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongilla lacustris

text: juvenile

text: freshwater lake biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Pseudoduganella sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: uncultured Pseudoduganella sp.

text: PacBio Sequel II

characteristic: sequencing method

text: NOT COLLECTED

characteristic: specimen id

characteristic: specimen voucher

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 01d61cca-3a86-4de6-aebd-54c63003efc2-asg-bin.24

text: odSpoLacu1.uncultured Pseudoduganella sp._1.1


text: Yes

characteristic: 16S recovered

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage;graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: SALLY LEYS

characteristic: collected by

text: University of Alberta

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Edmonton | University of Alberta

characteristic: geographic location (region and locality)

text: freshwater culture dish

characteristic: habitat

text: Spongilla lacustris

characteristic: host scientific name

characteristic: host taxid

text: SALLY LEYS

text: University of Alberta

text: metagenome-assembled genome

text: Sponge: Spongilla lacustris

text: juvenile

characteristic: lifestage

text: freshwater lake biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Undibacterium sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Undibacterium sp.

text: PacBio Sequel II

text: NOT COLLECTED

characteristic: sex

text: taxonomic classification defined by topology and ANI

text: ca57537a-8ea9-481c-bcaa-f593f069fb78-asg-bin.51

text: odSpoLacu1.uncultured Undibacterium sp._1.1


text: Yes

characteristic: 16S recovered

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

characteristic: assembly software

text: coverage;graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: SALLY LEYS

text: University of Alberta

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Canada

text: Edmonton | University of Alberta

text: freshwater culture dish

text: Spongilla lacustris

text: SALLY LEYS

characteristic: identified by

text: University of Alberta

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongilla lacustris

text: juvenile

text: freshwater lake biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Sphingomonas sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: uncultured Sphingomonas sp.

text: PacBio Sequel II

characteristic: sequencing method

text: NOT COLLECTED

characteristic: specimen id

characteristic: specimen voucher

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: db610988-f9fe-492b-a807-d1dbb4fc2ad8-asg-bin.21

text: odSpoLacu1.uncultured Sphingomonas sp._1.1


text: Yes

characteristic: 16S recovered

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage;graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: SALLY LEYS

characteristic: collected by

text: University of Alberta

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Edmonton | University of Alberta

characteristic: geographic location (region and locality)

text: freshwater culture dish

characteristic: habitat

text: Spongilla lacustris

characteristic: host scientific name

characteristic: host taxid

text: SALLY LEYS

text: University of Alberta

text: metagenome-assembled genome

text: Sponge: Spongilla lacustris

text: juvenile

characteristic: lifestage

text: freshwater lake biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Flavobacterium sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Flavobacterium sp.

text: PacBio Sequel II

text: NOT COLLECTED

characteristic: sex

text: ccd45242-ab75-41bb-baf2-9ba9f1fd70fe-asg-bin.47

text: odSpoLacu1.uncultured Flavobacterium sp._1.1


text: Yes

characteristic: 16S recovered

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage;graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: SALLY LEYS

text: University of Alberta

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Canada

text: Edmonton | University of Alberta

text: freshwater culture dish

text: Spongilla lacustris

text: SALLY LEYS

characteristic: identified by

text: University of Alberta

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongilla lacustris

text: juvenile

text: freshwater lake biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Caulobacter vibrioides

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Caulobacter vibrioides

text: PacBio Sequel II

characteristic: sequencing method

text: NOT COLLECTED

characteristic: specimen id

characteristic: specimen voucher

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: c1db9d16-026a-43e8-9d2b-e4c5db0a04e5-asg-bin.50

text: odSpoLacu1.Caulobacter vibrioides_1.1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Technical University of Munich, Institute of Virology

characteristic: Submitter Id

text: human

characteristic: common name

text: BLaER1 cells untreated for 1h (Barcode AAAACT)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: RNASample

characteristic: title


text: Technical University of Munich, Institute of Virology

text: public

text: human

text: BLaER1 cells treated with ADP for 1h (Barcode AAAGTT)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: RNASample


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text: human

text: BLaER1 cells treated with UDP for 1h (Barcode AAATTG)

text: Homo sapiens

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text: BLaER1 cells treated with ADP for 2h (Barcode AAGATT)

text: Homo sapiens

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text: BLaER1 cells treated with UTP for 2h (Barcode AATACA)

text: Homo sapiens

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text: BLaER1 cells treated with ATP for 3h (Barcode AATCTT)

text: Homo sapiens

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text: BLaER1 cells treated with UTP for 3h (Barcode AATTCT)

text: Homo sapiens

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text: human

text: BLaER1 cells untreated for 1h (Barcode ACAATA)

text: Homo sapiens

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text: public

text: human

text: BLaER1 cells treated with UDP for 3h (Barcode ACCGGC)

text: Homo sapiens

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text: BLaER1 cells treated with ADP for 4h (Barcode ACGGGG)

text: Homo sapiens

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text: BLaER1 cells treated with Ap4A for 4h (Barcode ACTTAT)

text: Homo sapiens

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text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 4h (Barcode AGACCT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells untreated for 6h (Barcode AGATTA)

text: Homo sapiens

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text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 4h (Barcode AGCGGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


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text: human

text: BLaER1 cells treated with ATP for 6h (Barcode AGGGGC)

text: Homo sapiens

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text: human

text: BLaER1 cells treated with ADP for 6h (Barcode ATAAAC)

text: Homo sapiens

text: Homo sapiens

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text: BLaER1 cells treated with UDP for 6h (Barcode ATACAA)

text: Homo sapiens

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text: RNASample


text: Technical University of Munich, Institute of Virology

text: public

text: human

text: BLaER1 cells untreated for 1h (Barcode ATATAG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 1h (Barcode ATCAAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UDP for 1h (Barcode ATGAAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ADP for 2h (Barcode ATTACT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UDP for 2h (Barcode ATTCTA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 3h (Barcode ATTTCA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 3h (Barcode CAAATA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 6h (Barcode CACCAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 6h (Barcode CACGGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with LPS for 4h (Barcode CAGGGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 4h (Barcode CATTAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells untreated for 3h (Barcode CCAACC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 6h (Barcode CCACAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 1h (Barcode CCCACG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 1h (Barcode CCCCGT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 2h (Barcode CCCTGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Technical University of Munich, Institute of Virology

text: public

text: human

text: BLaER1 cells treated with Ap4A for 2h (Barcode CCGGAC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells untreated for 3h (Barcode CCGTCG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 3h (Barcode CCTGGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UDP for 3h (Barcode CGAGGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ADP for 4h (Barcode CGCCCT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UDP for 4h (Barcode CGCGCA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 6h (Barcode CGCTGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 6h (Barcode CGGCCA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with LPS for 6h (Barcode CGGGCT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ADP for 1h (Barcode CGGTGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 1h (Barcode CGTGGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with LPS for 4h (Barcode CTAGTG)

text: Homo sapiens

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text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 4h (Barcode CTATAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 2h (Barcode CTGCGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells untreated for 6h (Barcode CTTTAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 2h (Barcode GACCGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Technical University of Munich, Institute of Virology

text: public

text: human

text: BLaER1 cells untreated for 3h (Barcode GAGCGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 6h (Barcode GATAAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 3h (Barcode GCACGG)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells untreated for 1h (Barcode GCCAGG)

text: Homo sapiens

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text: human

text: BLaER1 cells treated with ADP for 4h (Barcode GCCCTC)

text: Homo sapiens

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text: BLaER1 cells treated with UDP for 4h (Barcode GCCGTG)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with ADP for 6h (Barcode GCGAGC)

text: Homo sapiens

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text: RNASample


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text: BLaER1 cells treated with UTP for 6h (Barcode GCGCTG)

text: Homo sapiens

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text: BLaER1 cells treated with ATP for 1h (Barcode GCTAGA)

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text: Technical University of Munich, Institute of Virology

text: public

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text: BLaER1 cells untreated for 1h (Barcode GGGTCG)

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text: human

text: BLaER1 cells treated with ATP for 1h (Barcode TGTTTA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 1h (Barcode TTAATC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells untreated for 2h (Barcode TTAGTT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with Ap4A for 2h (Barcode TTATTG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UDP for 2h (Barcode TTGAAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ADP for 3h (Barcode TTTACA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UDP for 3h (Barcode TTTCTT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 4h (Barcode TTTTGA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells untreated for 1h (Barcode AAAACT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Technical University of Munich, Institute of Virology

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text: human

text: BLaER1 cells treated with ADP for 1h (Barcode AAAGTT)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with UDP for 1h (Barcode AAATTG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


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text: human

text: BLaER1 cells treated with ADP for 2h (Barcode AAGATT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 2h (Barcode AATACA)

text: Homo sapiens

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text: RNASample


text: public

text: human

text: BLaER1 cells treated with ATP for 3h (Barcode AATCTT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells treated with UTP for 3h (Barcode AATTCT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: BLaER1 cells untreated for 1h (Barcode ACAATA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


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text: human

text: BLaER1 cells treated with UDP for 3h (Barcode ACCGGC)

text: Homo sapiens

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text: RNASample


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text: human

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text: Homo sapiens

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text: RNASample


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text: human

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text: Homo sapiens

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text: human

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text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells untreated for 6h (Barcode AGATTA)

text: Homo sapiens

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text: RNASample


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text: human

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text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with ATP for 6h (Barcode AGGGGC)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with ADP for 6h (Barcode ATAAAC)

text: Homo sapiens

text: Homo sapiens

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text: human

text: BLaER1 cells treated with UDP for 6h (Barcode ATACAA)

text: Homo sapiens

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text: RNASample


text: Technical University of Munich, Institute of Virology

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text: human

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text: Homo sapiens

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text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with UDP for 1h (Barcode ATGAAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


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text: human

text: BLaER1 cells treated with ADP for 2h (Barcode ATTACT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


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text: human

text: BLaER1 cells treated with UDP for 2h (Barcode ATTCTA)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with ATP for 3h (Barcode ATTTCA)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with LPS for 4h (Barcode CAGGGG)

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text: RNASample


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text: human

text: BLaER1 cells treated with ATP for 4h (Barcode CATTAT)

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text: RNASample


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text: human

text: BLaER1 cells untreated for 3h (Barcode CCAACC)

text: Homo sapiens

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text: human

text: BLaER1 cells treated with Ap4A for 6h (Barcode CCACAT)

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text: RNASample


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text: human

text: BLaER1 cells treated with ATP for 1h (Barcode CCCACG)

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text: human

text: BLaER1 cells treated with UTP for 1h (Barcode CCCCGT)

text: Homo sapiens

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text: human

text: BLaER1 cells treated with ATP for 2h (Barcode CCCTGG)

text: Homo sapiens

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text: RNASample


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text: Homo sapiens

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text: human

text: BLaER1 cells treated with UDP for 3h (Barcode CGAGGC)

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text: BLaER1 cells treated with ADP for 4h (Barcode CGCCCT)

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text: Homo sapiens

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text: RNASample


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text: BLaER1 cells treated with ATP for 6h (Barcode CGCTGC)

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text: BLaER1 cells treated with UTP for 6h (Barcode CGGCCA)

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text: human

text: BLaER1 cells treated with LPS for 6h (Barcode CGGGCT)

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text: human

text: BLaER1 cells treated with ADP for 1h (Barcode CGGTGG)

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text: human

text: BLaER1 cells treated with UTP for 1h (Barcode CGTGGG)

text: Homo sapiens

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text: human

text: BLaER1 cells treated with LPS for 4h (Barcode CTAGTG)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with Ap4A for 4h (Barcode CTATAT)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with ATP for 2h (Barcode CTGCGG)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells untreated for 6h (Barcode CTTTAA)

text: Homo sapiens

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text: human

text: BLaER1 cells treated with UTP for 2h (Barcode GACCGC)

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text: Technical University of Munich, Institute of Virology

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text: human

text: BLaER1 cells untreated for 3h (Barcode GAGCGG)

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text: RNASample


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text: human

text: BLaER1 cells treated with Ap4A for 6h (Barcode GATAAT)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells treated with Ap4A for 3h (Barcode GCACGG)

text: Homo sapiens

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text: RNASample


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text: human

text: BLaER1 cells untreated for 1h (Barcode GCCAGG)

text: Homo sapiens

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text: BLaER1 cells treated with ADP for 4h (Barcode GCCCTC)

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text: BLaER1 cells treated with LPS for 6h (Barcode GCGGTC)

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text: human

text: BLaER1 cells treated with ATP for 1h (Barcode GCTAGA)

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text: BLaER1 cells treated with ADP for 1h (Barcode GCTCGC)

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text: BLaER1 cells treated with UDP for 6h (Barcode GTAATA)

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text: BLaER1 cells untreated for 2h (Barcode GTTCGA)

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text: BLaER1 cells untreated for 2h (Barcode TAAGAT)

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text: BLaER1 cells treated with ADP for 2h (Barcode TAATGA)

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text: BLaER1 cells untreated for 6h (Barcode TCATAT)

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text: human

text: Undetermined

text: Homo sapiens

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text: University hospital Dresden

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tag: Namespace:University hospital Dresden

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text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

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text: malaria parasite P. falciparum

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text: National Institute of Biology

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tag: Namespace:National Institute of Biology

unit: L

characteristic: amount or size of sample collected

text: agricultural ecosystem

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Irrigation water

text: solid environmental material

characteristic: environmental medium

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Osrednjeslovenska region

characteristic: geographic location (region and locality)

text: farm

characteristic: local environmental context

text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid amplification

text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid extraction

text: freshwater metagenome

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characteristic: sample storage temperature

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characteristic: sample volume or weight for DNA extraction

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: agricultural ecosystem

text: Environmental water

characteristic: description

text: solid environmental material

text: Slovenia

text: Osrednjeslovenska region

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text: doi: 10.1016/j.watres.2020.115628

text: doi: 10.1016/j.watres.2020.115628

text: groundwater metagenome

characteristic: organism

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text: MiSeq

characteristic: title


text: National Institute of Biology

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text: agricultural ecosystem

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Environmental water

text: solid environmental material

characteristic: environmental medium

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Goriska region

characteristic: geographic location (region and locality)

text: farm

characteristic: local environmental context

text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid amplification

text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid extraction

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: agricultural ecosystem

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characteristic: description

text: solid environmental material

text: Slovenia

text: Goriska region

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text: doi: 10.1016/j.watres.2020.115628

text: doi: 10.1016/j.watres.2020.115628

text: groundwater metagenome

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text: National Institute of Biology

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characteristic: collection date

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Obalno-kraska region

characteristic: geographic location (region and locality)

text: farm

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text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid amplification

text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid extraction

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: agricultural ecosystem

text: Environmental water

characteristic: description

text: solid environmental material

text: Slovenia

text: Obalno-kraska region

text: farm

text: doi: 10.1016/j.watres.2020.115628

text: doi: 10.1016/j.watres.2020.115628

text: groundwater metagenome

text: grab

characteristic: sample collection method

characteristic: sample storage temperature

text: groundwater metagenome

text: MiSeq


text: National Institute of Biology

text: public

text: agricultural ecosystem

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characteristic: collection date

characteristic: depth

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text: solid environmental material

characteristic: environmental medium

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Obalno-kraska region

characteristic: geographic location (region and locality)

text: farm

characteristic: local environmental context

text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid amplification

text: doi: 10.1016/j.watres.2020.115628

characteristic: nucleic acid extraction

text: drinking water metagenome

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characteristic: External Id

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