characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Malawi

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'mauve'

text: FIN

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'mauve'

text: MALE

text: NOT APPLICABLE

text: N


status: PUBLIC

tag: attribute

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: Gregoire Vernaz | Richard Zatha | Emilia Santos

text: University of Cambridge | University of Malawi | University of Cambridge

characteristic: collection date

text: zebra mbuna

characteristic: common name

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

characteristic: organism

text: FIN

text: Maylandia zebra

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Malawi

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'olive'

text: FIN

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'olive'

text: MALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'deep'

characteristic: organism

text: FIN

text: Tropheops sp. 'deep'

text: MALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

text: FIN

text: Maylandia callainos

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Malawi

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'deep'

text: FIN

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'deep'

text: FEMALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebra mbuna

characteristic: common name

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

characteristic: organism

text: FIN

text: Maylandia zebra

text: FEMALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Malawi

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Cynotilapia aurifrons

text: FIN

text: Cynotilapia aurifrons

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay | Market

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Diplotaxodon cf. macrops 'black dorsal'

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Diplotaxodon cf. macrops 'black dorsal'

text: NOT COLLECTED

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

text: Cynotilapia aurifrons

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Cynotilapia aurifrons

text: MALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: collection date

text: Malawi

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Cynotilapia zebroides

text: WHOLE ORGANISM

text: ToL

text: Cynotilapia zebroides

text: FEMALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia callainos

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Maylandia callainos

text: MALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: Lake Malawi | Nkhata Bay | Market

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

text: Diplotaxodon sp. 'limnothrissa black dorsal'

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: NOT COLLECTED

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Malawi

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Market

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Diplotaxodon sp. 'holochromis'

text: WHOLE ORGANISM

text: ToL

text: Diplotaxodon sp. 'holochromis'

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Cynotilapia zebroides

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Cynotilapia zebroides

text: MALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: Lake Malawi | Nkhata Bay | Market

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

text: Diplotaxodon cf. macrops 'offshore'

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Diplotaxodon cf. macrops 'offshore'

text: NOT COLLECTED

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: collection date

text: Malawi

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Market

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Diplotaxodon cf. macrops 'black dorsal'

text: FIN

characteristic: sample derived from

text: Diplotaxodon cf. macrops 'black dorsal'

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Cynotilapia zebroides

text: FIN

characteristic: organism part

characteristic: project name

text: Cynotilapia zebroides

text: FEMALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: collecting institution

characteristic: collection date

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Market

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: organism

text: FIN

text: NOT COLLECTED

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay | Market

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Diplotaxodon sp. 'holochromis'

text: FIN

characteristic: sample derived from

text: Diplotaxodon sp. 'holochromis'

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Cynotilapia zebroides

text: FIN

characteristic: organism part

characteristic: project name

text: Cynotilapia zebroides

text: MALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Market

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

text: Diplotaxodon cf. macrops 'offshore'

characteristic: organism

text: FIN

text: Diplotaxodon cf. macrops 'offshore'

text: NOT COLLECTED

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

text: FIN

characteristic: sample derived from

text: Maylandia callainos

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Cell and Developmental Biology, Department of Computational Medicine and Bioinformatics

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: To dissociate human intestinal organoids to single cells, organoids were mechanically isolated from Matrigel droplets and then tissue minced into small fragments using a scalpel in a petri dish filled with ice-cold 1X HBSS (with Mg2+, Ca2). This tissue was then transferred to a 15 mL conical tube. Dissociation enzymes and reagents from the Neural Tissue Dissociation Kit (Miltenyi, cat. no. 130-092-628) were used, and all incubation steps were carried out in a 37ºC incubator unless otherwise stated. All tubes and pipette tips used to handle cell suspensions were pre-washed with 1% BSA in HBSS to prevent adhesion of cells to the plastic. Tissue was treated for 15 minutes at 37ºC with Mix 1. Mix 2 was added to the digestion, and tissue was incubated for 10 minute increments at 37ºC until digestion was complete. After each 10 minute incubation, tissue was agitated using a P1000, and tissue digestion was visually assessed under a stereo microscope. This process continued until the tissue was fully digested. Cells were filtered through a 70 µm filter coated with 1% BSA in 1X HBSS, spun down at 500g for 5 minutes at 4ºC and resuspended in 500µl 1X HBSS (with Mg2+, Ca2+). Cells were counted using a hemocytometer, then spun down and resuspended (if necessary) to reach a concentration of 1000 cells/µL and kept on ice. Single cell droplets were immediately prepared on the 10x Chromium according to manufacturer instructions at the University of Michigan The Advanced Genomics Core, with a target of capturing 5,000 cells. Single cell libraries were prepared using the Chromium Next GEM Single Cell 3’ Library Construction Kit v3 according to manufacturer instructions. Maintenance and differentiation into HIOs were carried out as previously described. Cells were kept in a 37°C tissue culture incubator with 5% CO2 and lines were maintained in mTeSR Plus cultured media (Stemcell Technologies Cat# 100-1130). Stem cells underwent directed differentiation into definitive endoderm over a 3-day treatment using Activin A (100ng/mL, R&D Systems Cat#338-AC) added to RPMI base media. This base media was supplemented with 0%, 0.2%, 2% HyClone dFBS (Thermo Fischer Cat#SH3007103) on subsequent days with the addition of 5 mL penicillin-streptomycin each day (Gibco Cat# 15070063). After three days, endoderm monolayers were differentiated into an intestinal identity by treatment with FGF434 (500ng/mL) and CHIR99021 (2μM, APExBIO Cat#A8396). On days 4-6 of hindgut differentiation, spheroids budded from the monolayer and were collected. These spheroids were embedded in Matrigel as previously described32 and maintained in basal growth media consisting of Advanced DMEM/F12 (Gibco Cat# 11320033) with B27 (50x, Thermo Fisher Cat#17504044), GlutaMAX (1X, Gibco Cat#35050061), penicillin-streptomycin (Gibco Cat# 15070063), and HEPES buffer (15 mM , Gibco Cat#15630080). Organoid basal growth media was supplemented with epidermal growth factor (EGF) (100 ng/mL, 10 ng/mL, 1 ng/mL R&D Systems Cat#236-EG-01M) or Epiregulin (EREG) (100 ng/mL, 10 ng/mL, 1 ng/mL R&D Systems Cat#1195-EP-025/CF) with Noggin-Fc (100ng/mL, purified from conditioned media35), and R-Spondin1 (5% conditioned medium36) for the first three days of culture to pattern a proximal small intestine. On the third day after embedding, media was changed to basal growth media supplemented with EGF or EREG only (no additional Noggin or R-Spondin1) and remained in this media for the duration of the experiments with media changes every 5 days. Organoids were not passaged to avoid disrupting the development and spatial organization of the key cell types seen in EREG-grown HIOs. Immediately after tissue dissociation, single cell libraries were prepared on the 10x Chromium with a target of 5000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v3, 16 rxns PN-120237 was used Immediately after tissue dissociation, single cell libraries were prepared on the 10x Chromium with a target of 5000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v3, 16 rxns PN-120237 was used

characteristic: description

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: organoid culture

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Cell and Developmental Biology, Department of Computational Medicine and Bioinformatics

text: public

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: not collected

text: human

text: normal

text: not collected

text: organoid culture

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: male

characteristic: sex


E-MTAB-13458:CettA MMAA NaCl

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13458:CettA MMAA NaCl

tag: Namespace:1Expression Génétique Microbienne, CNRS, Université Paris Cité, Institut de Biologie Physico-Chimique, Paris, France

text: ArrayExpress

text: not collected

text: Protocols: 3 mL samples were collected for each strain for the transcriptomic analysis. Cultures were stopped by addition of two volumes of RNAprotect (Qiagen) then centrifuged at 5,000 xg for 5 min. Pellets were isolated and immediately stored at - 80 °C. Cultures of the three strains (WT, ∆ettA and CettA) in a volume of 125mL of MMAA 0.4 M NaCl medium were inoculated at 1/20 with overnight cultures prepared in LB-Difco medium. Cells were grown at 37 ºC with shaking. After 330 min of culture, 3 mL samples were collected for each strain for the transcriptomic analysis. Total RNA were extracted with the Direct-zol RNA MiniPrep kit (ZYMO RESEARCH). Ribosomal RNAs were specifically eliminated using the Ribo-Zero rRNA Removal kit (Illumina). The library were constructed by the GATC company.Library preparation incorporated adaptor sequences and indexing compatible for Illumina sequencing technology, using proprietary methods of GATC Biotech. The cDNA library preparation was performed according to SOP S-11169. After first strand synthesis using random primers, the second strand synthesis is performed. The ends of the double stranded cDNA fragments are repaired and dATP ligated to the blunt ended fragments. Then, the sequencing adapters are ligated to the DNA fragments.

text: Complemented strain, strain deleted of ettA complemented with isertion of ettA at the p21 locu

characteristic: genotype

text: not collected

text: not applicable

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

characteristic: strain

text: CettA MMAA NaCl

characteristic: title


E-MTAB-13458:DettA MMAA NaCl

text: 1Expression Génétique Microbienne, CNRS, Université Paris Cité, Institut de Biologie Physico-Chimique, Paris, France

text: public

text: E-MTAB-13458:DettA MMAA NaCl

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

characteristic: description

text: Deletion of the gene ettA

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: DettA MMAA NaCl


E-MTAB-13458:WT MMAA NaCl

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-13458:WT MMAA NaCl

text: ArrayExpress

text: not collected

text: wild type genotype

text: not collected

text: not applicable

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: WT MMAA NaCl


text: Cantacuzino NIMMRD

characteristic: INSDC center name

text: public

tag: Namespace:Cantacuzino NIMMRD

characteristic: Submitter Id

text: Romania

text: Bucharest

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: Yes

text: feces

text: Salmonella enterica

characteristic: organism

characteristic: pathotype

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: UNIVERSITY OF EAST ANGLIA, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF EAST ANGLIA, UK

text: host-associated

characteristic: broad-scale environmental context

text: 16S rRNA gene sequences from Seychelles warbler faecal samples

text: faecal matter

characteristic: environmental medium

text: Seychelles

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut microbiome

characteristic: local environmental context

text: Acrocephalus sechellensis

text: Age, senescence and the gut microbiome in a wild animal population

characteristic: project name

text: Acrocephalus sechellensis

text: Seychelles warbler gut microbiome sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EAST ANGLIA, UK

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: host-associated

characteristic: collection date

text: 16S rRNA gene sequences from Seychelles warbler control

characteristic: description

text: control

text: Seychelles

characteristic: geographic location (country and/or sea)

text: gut microbiome

text: Acrocephalus sechellensis

text: Acrocephalus sechellensis


text: Cantacuzino NIMMRD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Romania

text: Vacaresti

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: Yes

text: Salmonella enterica

characteristic: organism

characteristic: pathotype

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSERM

text: public

text: APHP

characteristic: collecting institution

text: not provided

text: not provided

characteristic: collector name

text: Human respiratory syncytial virus A

text: France

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Human respiratory syncytial virus A

text: Human respiratory syncytial virus A

text: RSV A

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: APHP

text: not provided

characteristic: collection date

text: not provided

text: Human respiratory syncytial virus B

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: Homo sapiens

text: not provided

text: Human respiratory syncytial virus B

text: Human respiratory syncytial virus B

text: RSV B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

characteristic: host

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi

characteristic: serovar


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Constanta

characteristic: geographic location (region and locality)

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Barzava

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Sewage

characteristic: description

text: Spain

text: Klebsiella phage vB_Kpn_K30lambda2.2

text: Klebsiella phage vB_Kpn_K30lambda2.2

text: Klebsiella phage


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K7PH164C4

text: Klebsiella phage vB_Kpn_K7PH164C4

text: Klebsiella phage


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K32PH164C1

text: Klebsiella phage vB_Kpl_K32PH164C1

text: Klebsiella phage


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Buzau

text: Homo sapiens

characteristic: host

text: Yes

text: feces

text: Salmonella enterica

characteristic: pathotype

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: universita degli studi di verona

text: public

tag: Namespace:universita degli studi di verona

text: not provided

text: human

characteristic: common name

text: Human plaque sample

text: Italy

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: universita degli studi di verona

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: human

text: Microbial Community DNA Standard

text: Italy

text: Homo sapiens

text: Homo sapiens


text: Cantacuzino NIMMRD

text: public

characteristic: Submitter Id

characteristic: collection date

text: Romania

characteristic: geographic location (country and/or sea)

text: Bucuresti

characteristic: geographic location (region and locality)

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Ohio


text: Cantacuzino NIMMRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Olt

text: Homo sapiens

characteristic: host

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Timisoara

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: pathotype

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Francis Crick Institute

text: public

tag: Namespace:The Francis Crick Institute

text: house mouse

characteristic: common name

text: Germline Tail

characteristic: description

text: United Kingdom

text: Mus musculus

text: Mus musculus


text: The Francis Crick Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Cell Line_Resistance Induced in vitro

text: United Kingdom

text: Mus musculus

text: Mus musculus


text: The Francis Crick Institute

characteristic: INSDC center name

text: public

characteristic: collection date

text: house mouse

text: Cell Line

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: Mus musculus


characteristic: INSDC first public

text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K59PH2

characteristic: organism

text: Klebsiella phage vB_Kpl_K59PH2

text: Environmental

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K24PH164C1

text: Klebsiella phage vB_Kpn_K24PH164C1

text: Environmental


characteristic: ENA-FIRST-PUBLIC

text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K25PH129C1

text: Klebsiella phage vB_Kpn_K25PH129C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K71PH129C1

text: Klebsiella phage vB_Kpl_K71PH129C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K1PH164C1

text: Klebsiella phage vB_Kpn_K1PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K39PH122C2

text: Klebsiella phage vB_Kpl_K39PH122C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K66PH128C1

text: Klebsiella phage vB_Ko_K66PH128C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K72PH164C2

text: Klebsiella phage vB_Kpl_K72PH164C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K40PH129C1

text: Klebsiella phage vB_Kpn_K40PH129C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K15PH90

text: Klebsiella phage vB_Kpn_K15PH90

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K51PH129C1

text: Klebsiella phage vB_Kpn_K51PH129C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K17alpha62

text: Klebsiella phage vB_Kpn_K17alpha62

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K57alpha1.2

text: Klebsiella phage vB_Kpl_K57alpha1.2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K60PH164C1

text: Klebsiella phage vB_Kpn_K60PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kte_K65PH164

text: Klebsiella phage vB_Kte_K65PH164

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K23PH08C2

text: Klebsiella phage vB_Kpn_K23PH08C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K54lambda1.1.1

text: Klebsiella phage vB_Kpl_K54lambda1.1.1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K18PH07C1

text: Klebsiella phage vB_Kpn_K18PH07C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K45PH128C2

text: Klebsiella phage vB_Kpn_K45PH128C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K9PH25C2

text: Klebsiella phage vB_Kpn_K9PH25C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K35PH164C3

text: Klebsiella phage vB_Kpl_K35PH164C3

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K80PH1317b

text: Klebsiella phage vB_Kpn_K80PH1317b

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K74PH129C2

text: Klebsiella phage vB_Ko_K74PH129C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K80PH1317a

text: Klebsiella phage vB_Kpn_K80PH1317a

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K11PH164C1

text: Klebsiella phage vB_Kpn_K11PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K58PH129C2

text: Klebsiella phage vB_Kpl_K58PH129C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K26PH128C1

text: Klebsiella phage vB_Ko_K26PH128C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K43PH164C1

text: Klebsiella phage vB_Kpn_K43PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K16PH164C3

text: Klebsiella phage vB_Kpn_K16PH164C3

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K56PH164C1

text: Klebsiella phage vB_Kpl_K56PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K48PH164C1

text: Klebsiella phage vB_Kpl_K48PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K82P1

text: Klebsiella phage vB_Kpn_K82P1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K37PH164C1

text: Klebsiella phage vB_Kpn_K37PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K42PH8

text: Klebsiella phage vB_Kpn_K42PH8

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K27PH129C1

text: Klebsiella phage vB_Kpn_K27PH129C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K8PH128

text: Klebsiella phage vB_Kpl_K8PH128

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K41P2

text: Klebsiella phage vB_Ko_K41P2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K5lambda5

text: Klebsiella phage vB_Ko_K5lambda5

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K19PH14C4P1

text: Klebsiella phage vB_Kpn_K19PH14C4P1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K61PH164C1

text: Klebsiella phage vB_Kpn_K61PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K44PH129C1

text: Klebsiella phage vB_Kpl_K44PH129C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K13PH07C1S

text: Klebsiella phage vB_Kpn_K13PH07C1S

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K13PH07C1L

text: Klebsiella phage vB_Kpn_K13PH07C1L

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K22PH164C1

text: Klebsiella phage vB_Kpn_K22PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K69PH164C2

text: Klebsiella phage vB_Kpn_K69PH164C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K2PH164C2

text: Klebsiella phage vB_Kpn_K2PH164C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K63PH128

text: Klebsiella phage vB_Kpn_K63PH128

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K38PH09C2

text: Klebsiella phage vB_Kpn_K38PH09C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K64PH164C4

text: Klebsiella phage vB_Kpn_K64PH164C4

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K33PH14C2

text: Klebsiella phage vB_Kpn_K33PH14C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K2alpha62

text: Klebsiella phage vB_Kpn_K2alpha62

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K6PH25C3

text: Klebsiella phage vB_Kpn_K6PH25C3

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K2PH164C1

text: Klebsiella phage vB_Kpn_K2PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K53PH164C2

text: Klebsiella phage vB_Kpl_K53PH164C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K46PH129

text: Klebsiella phage vB_Kpn_K46PH129

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K54lambda2

text: Klebsiella phage vB_Kpn_K54lambda2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K52PH129C1

text: Klebsiella phage vB_Kpn_K52PH129C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K31PH164

text: Klebsiella phage vB_Kpn_K31PH164

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K2064PH2

text: Klebsiella phage vB_Kpn_K2064PH2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K14PH164C1

text: Klebsiella phage vB_Kpl_K14PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K2069PH1

text: Klebsiella phage vB_Kpn_K2069PH1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K28PH129

text: Klebsiella phage vB_Kpn_K28PH129

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K62PH164C2

text: Klebsiella phage vB_Kpn_K62PH164C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K29PH164C1

text: Klebsiella phage vB_Ko_K29PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K50PH164C1

text: Klebsiella phage vB_Kpn_K50PH164C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpl_K49PH164C2

text: Klebsiella phage vB_Kpl_K49PH164C2

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K70PH128C1

text: Klebsiella phage vB_Ko_K70PH128C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K21lambda1

text: Klebsiella phage vB_Kpn_K21lambda1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K34PH164

text: Klebsiella phage vB_Kpn_K34PH164

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K10PH82C1

text: Klebsiella phage vB_Kpn_K10PH82C1

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Ko_K4PH164

text: Klebsiella phage vB_Ko_K4PH164

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K17alpha61

text: Klebsiella phage vB_Kpn_K17alpha61

text: Environmental


text: public

text: Sewage

text: Spain

text: Klebsiella phage vB_Kpn_K12P1.1

text: Klebsiella phage vB_Kpn_K12P1.1

text: Environmental


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Constanta

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: Yes

text: Salmonella enterica

characteristic: pathotype

text: Salmonella enterica

text: Typhimurium

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Brasov

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Cantacuzino NIMMRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Romania

text: Botosani

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: Eastern Cape

text: Human, Other

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: serovar


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: public

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: Submitter Id

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

unit: years

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: unknown

characteristic: host subject id

text: unknown

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: not provided

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

text: unknown

text: unknown

text: RNA

text: Nasopharyngeal swab

characteristic: organism


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: unknown

text: unknown

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Embrapa Southeast Livestock

text: public

tag: Namespace:Embrapa Southeast Livestock

text: sheep

text: Susceptible

characteristic: description

text: Morada Nova

characteristic: ecotype

text: Brazil

text: Sao Carlos

characteristic: geographic location (region and locality)

text: Ovis�aries

characteristic: host scientific name

text: Ovis aries

text: Ovis aries

text: male

characteristic: sex

text: Abomasum

characteristic: title


text: Embrapa Southeast Livestock

characteristic: INSDC center name

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text: sheep

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text: Morada Nova

text: Brazil

characteristic: geographic location (country and/or sea)

text: Sao Carlos

text: Ovis�aries

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characteristic: organism

text: Ovis aries

text: female

text: Abomasum


characteristic: ENA-CHECKLIST

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text: Embrapa Southeast Livestock

text: public

text: sheep

characteristic: common name

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text: Sao Carlos

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text: Ovis aries

text: Ovis aries

text: male

text: Abomasum


characteristic: External Id

text: Embrapa Southeast Livestock

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text: Abomasum


text: HMGU

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text: SEEC

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text: Untreated wastewater was collected in Uppsala at Kungsängsverket over 1 week leading up to 2023-08-28. Daily samples were collected over 24 hours using a flow compensated sampler then combined flow-proportionally into a composite weekly sample.

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: virus

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text: wastewater treatment plant (municipal)

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text: Severe acute respiratory syndrome coronavirus 2|NCBITaxon:2697049|http://purl.obolibrary.org/obo/NCBITaxon_2697049

characteristic: surveillance target

text: 2023-W35 Uppsala Amplified SARS-CoV-2 RNA from wastewater


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text: SEEC

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text: Untreated wastewater was collected in Stockholm-Käppala at Käppalaverket on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (country and/or sea)

text: virus

text: Käppalaverket

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text: 2023-W35 Stockholm-Käppala Amplified SARS-CoV-2 RNA from wastewater


characteristic: External Id

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text: Untreated wastewater was collected in Malmö at Sjölunda reningsverk on 2023-08-28 over 24 hours using a flow compensated sampler

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characteristic: title


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text: Untreated wastewater was collected in Örebro at Skebäcks reningsverk on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (latitude)

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text: virus

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characteristic: ENA-CHECKLIST

text: SEEC

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text: Untreated wastewater was collected in Umeå at Öns reningsverk on 2023-08-28 over 24 hours using a flow compensated sampler

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characteristic: ENA-FIRST-PUBLIC

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text: SEEC

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text: Untreated wastewater was collected in Kalmar at Kalmarsundsverket on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (country and/or sea)

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characteristic: External Id

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text: Untreated wastewater was collected in Helsingborg at Öresundsverket on 2023-08-28 over 24 hours using a flow compensated sampler

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text: Sweden

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text: SEEC

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text: Untreated wastewater was collected in Jönköping at Simsholmens avloppsreningsverk on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (latitude)

text: virus

text: Simsholmens avloppsreningsverk

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characteristic: title


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text: SEEC

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text: Untreated wastewater was collected in Östersund at Gövikens reningsverk on 2023-08-28 over 24 hours using a flow compensated sampler

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text: virus

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text: Gövikens reningsverk

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text: wastewater metagenome

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characteristic: ENA-FIRST-PUBLIC

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text: SEEC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Untreated wastewater was collected in Göteborg at Ryaverket on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

text: virus

text: Ryaverket

text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: Severe acute respiratory syndrome coronavirus 2|NCBITaxon:2697049|http://purl.obolibrary.org/obo/NCBITaxon_2697049

characteristic: surveillance target

text: 2023-W35 Göteborg Amplified SARS-CoV-2 RNA from wastewater


characteristic: External Id

text: SEEC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Untreated wastewater was collected in Linköping at Nykvarnsverket on 2023-08-28 over 24 hours using a flow compensated sampler

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: virus

text: Nykvarnsverket

text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: 2023-W35 Linköping Amplified SARS-CoV-2 RNA from wastewater


text: SEEC

characteristic: INSDC last update

text: public

characteristic: INSDC status

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text: Untreated wastewater was collected in Karlstad at Sjöstadsverket on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (latitude)

text: virus

text: Sjöstadsverket

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: 2023-W35 Karlstad Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-CHECKLIST

text: SEEC

text: public

text: Untreated wastewater was collected in Luleå at Uddebo reningsverk on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

text: Uddebo reningsverk

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text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: 2023-W35 Luleå Amplified SARS-CoV-2 RNA from wastewater

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SEEC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Untreated wastewater was collected in Stockholm-Henriksdal at Henriksdal reningsverk on 2023-08-28 over 24 hours using a flow compensated sampler

text: Sweden

text: virus

text: Henriksdal reningsverk

text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

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text: 2023-W35 Stockholm-Henriksdal Amplified SARS-CoV-2 RNA from wastewater


characteristic: External Id

text: SEEC

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text: public

text: Untreated wastewater was collected in Uppsala at Kungsängsverket over 1 week leading up to 2023-09-04. Daily samples were collected over 24 hours using a flow compensated sampler then combined flow-proportionally into a composite weekly sample.

characteristic: description

text: Sweden

text: virus

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text: SEEC

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text: public

characteristic: INSDC status

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text: Untreated wastewater was collected in Gävle at Duvbackens reningsverk on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: virus

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text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: 2023-W36 Gävle Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-CHECKLIST

text: SEEC

text: public

text: Untreated wastewater was collected in Stockholm-Käppala at Käppalaverket on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

text: Käppalaverket

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

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text: 2023-W36 Stockholm-Käppala Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SEEC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Untreated wastewater was collected in Örebro at Skebäcks reningsverk on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

text: virus

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text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: 2023-W36 Örebro Amplified SARS-CoV-2 RNA from wastewater

characteristic: title


characteristic: External Id

text: SEEC

characteristic: INSDC center name

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text: Untreated wastewater was collected in Malmö at Sjölunda reningsverk on 2023-09-04 over 24 hours using a flow compensated sampler

characteristic: description

text: Sweden

text: virus

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text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

characteristic: sewage type

text: Severe acute respiratory syndrome coronavirus 2|NCBITaxon:2697049|http://purl.obolibrary.org/obo/NCBITaxon_2697049

text: 2023-W36 Malmö Amplified SARS-CoV-2 RNA from wastewater


text: SEEC

characteristic: INSDC last update

text: public

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text: Untreated wastewater was collected in Umeå at Öns reningsverk on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (country and/or sea)

text: virus

text: Öns reningsverk

text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

characteristic: surveillance target

text: 2023-W36 Umeå Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-CHECKLIST

text: SEEC

text: public

text: Untreated wastewater was collected in Kalmar at Kalmarsundsverket on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: virus

characteristic: investigation type

text: Kalmarsundsverket

characteristic: name of the sampling site

text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SEEC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Untreated wastewater was collected in Helsingborg at Öresundsverket on 2023-09-04 over 24 hours using a flow compensated sampler

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text: virus

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text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: 2023-W36 Helsingborg Amplified SARS-CoV-2 RNA from wastewater


characteristic: External Id

text: SEEC

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text: public

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characteristic: description

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characteristic: title


text: SEEC

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text: public

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text: Untreated wastewater was collected in Västerås at Reningsverket Kungsängen on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (country and/or sea)

text: virus

text: Reningsverket Kungsängen

text: wastewater metagenome

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text: wastewater treatment plant (municipal)

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text: 2023-W36 Västerås Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-CHECKLIST

text: SEEC

text: public

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characteristic: geographic location (latitude)

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text: virus

characteristic: investigation type

text: Gövikens reningsverk

text: wastewater metagenome

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text: 2023-W36 Östersund Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SEEC

text: public

characteristic: Submitter Id

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text: virus

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text: wastewater metagenome

text: wastewater metagenome

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text: 2023-W36 Göteborg Amplified SARS-CoV-2 RNA from wastewater


characteristic: External Id

text: SEEC

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characteristic: organism

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characteristic: title


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text: SEEC

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text: virus

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text: Sjöstadsverket

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text: wastewater treatment plant (municipal)

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SEEC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Untreated wastewater was collected in Luleå at Uddebo reningsverk on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

text: virus

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text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

characteristic: surveillance target

text: 2023-W36 Luleå Amplified SARS-CoV-2 RNA from wastewater


characteristic: External Id

text: SEEC

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text: public

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characteristic: description

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text: virus

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text: wastewater metagenome

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text: public

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text: Untreated wastewater was collected in Stockholm-Bromma at Bromma reningsverk on 2023-09-04 over 24 hours using a flow compensated sampler

text: Sweden

characteristic: geographic location (country and/or sea)

text: virus

text: Bromma reningsverk

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characteristic: organism

text: wastewater metagenome

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characteristic: ENA-CHECKLIST

text: SEEC

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text: Untreated wastewater was collected in Uppsala at Kungsängsverket over 1 week leading up to 2023-09-11. Daily samples were collected over 24 hours using a flow compensated sampler then combined flow-proportionally into a composite weekly sample.

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characteristic: geographic location (latitude)

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text: virus

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characteristic: title


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characteristic: ENA-LAST-UPDATE

text: SEEC

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characteristic: Submitter Id

characteristic: collection date

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text: Sweden

text: virus

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text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

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characteristic: External Id

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text: Sweden

characteristic: geographic location (country and/or sea)

text: virus

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text: wastewater metagenome

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characteristic: ENA-CHECKLIST

text: SEEC

text: public

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characteristic: geographic location (latitude)

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text: virus

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text: Öns reningsverk

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: Severe acute respiratory syndrome coronavirus 2|NCBITaxon:2697049|http://purl.obolibrary.org/obo/NCBITaxon_2697049

text: 2023-W37 Umeå Amplified SARS-CoV-2 RNA from wastewater


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SEEC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Untreated wastewater was collected in Helsingborg at Öresundsverket on 2023-09-11 over 24 hours using a flow compensated sampler

text: Sweden

text: virus

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text: wastewater metagenome

text: wastewater metagenome

text: wastewater treatment plant (municipal)

text: 2023-W37 Helsingborg Amplified SARS-CoV-2 RNA from wastewater

characteristic: title


characteristic: External Id

text: SEEC

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characteristic: description

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text: Simsholmens avloppsreningsverk

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text: SEEC

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text: public

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text: Sweden

characteristic: geographic location (country and/or sea)

text: virus

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text: wastewater metagenome

text: wastewater treatment plant (municipal)

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characteristic: ENA-CHECKLIST

text: SEEC

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characteristic: geographic location (latitude)

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text: virus

characteristic: investigation type

text: Ryaverket

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SEEC

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characteristic: Submitter Id

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text: Sweden

text: virus

text: Himmerfjärdsverket

text: wastewater metagenome

characteristic: organism

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characteristic: External Id

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