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text: public

text: Cell Line

characteristic: PHENOTYPE

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Plasmodium fal.

text: Plasmodium fal. NF79

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF80

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

characteristic: organism

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF82

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF81

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF54

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF55

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF56

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF58

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF57

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF59

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF61

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF60

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF62

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF64

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF65

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF66

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF63

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF68

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF67

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF70

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF71

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF72

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF69

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF75

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF76

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF73

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF77

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF74

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF78

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium fal.

text: Plasmodium fal. NF82

text: SC

text: public

text: Plasmodium fal.

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7


text: Plasmodium_knowlesi (strainH)

text: Plasmodium_knowlesi (strainH)

text: SC

text: public

text: Plasmodium_knowlesi (strainH)

text: Plasmodium knowlesi strain H

text: Plasmodium knowlesi strain H


E-MTAB-12160:Control 4h Bio1

text: KIS

text: public

text: E-MTAB-12160:Control 4h Bio1

text: ArrayExpress

characteristic: broker name

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: Protocols: Cells were washed with PBS and lysed directly in cell culture well using lysis buffer provided in Quick-RNA MicroPrep Plus kit (Zymo Research). Brown adipocytes were differentiated from an immortalized brown preadipocyte mouse cell line previously described (PMID: 16679291). Preadipocytes were maintained and expanded at low confluence (<50 %) in growth media [DMEM high glucose (Gibco) supplemented with 20% fetal bovine serum (Sigma-Aldrich), 20 mM HEPES (Sigma-Aldrich), and 100 U/mL penicillin /streptomycin (Gibco)]. For differentiation, preadipocytes were washed twice with phosphate-buffered solution (PBS), dissociated with TrypLE Express, and seeded at a density of approximately 23,000 cells/cm2 in growth medium. Medium was changed after 24 hours to differentiation medium [DMEM high glucose supplemented with 10% fetal bovine serum, 20 nM insulin, 1 nM triiodothyronine (T3), and 100 U/mL penicillin/streptomycin] and cells were cultured for 2 days. Cell differentiation was then induced by addition of induction media (differentiation media supplemented with 0.125 mM indomethacin, 0.5 μM dexamethasone, and 0.5 mM isobutyl methylxanthine) for two days, after which, medium was changed to differentiation medium for two additional days. Differentiated adipocytes were serum starved for 2 hours using starvation medium [DMEM low glucose (Gibco) supplemented with 2.5 mM glucose (to a final concentration of 8mM), 0.5% bovine serum albumin (BSA) (Sigma-Aldrich), and 100 U/mL penicillin /streptomycin] before treatment with Insulin-NanoRod structures or insulin diluted in starvation medium for four hours. For control sample only starvation media was used. Following treatment, cells were washed one time in PBS and harvested for RNA isolation. Total RNA was isolated from differentiated adipocytes using Quick-RNA MicroPrep Plus kit (Zymo Research) TruSeq RNA Library Prep Kit v2 Low Sample Protocol, 500ng RNA input

characteristic: description

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Control 4h Bio1


E-MTAB-12160:Control 4h Bio2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KIS

text: public

characteristic: SRA accession

text: E-MTAB-12160:Control 4h Bio2

characteristic: Submitter Id

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: Control 4h Bio2


E-MTAB-12160:Control 4h Bio3

characteristic: External Id

text: KIS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12160:Control 4h Bio3

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

characteristic: common name

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: Control 4h Bio3

characteristic: title


E-MTAB-12160:Free insulin 100nM 4h Bio1

text: KIS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12160:Free insulin 100nM 4h Bio1

text: ArrayExpress

characteristic: broker name

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

characteristic: description

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: Free insulin 100nM 4h Bio1


E-MTAB-12160:Free insulin 100nM 4h Bio2

text: KIS

text: public

text: E-MTAB-12160:Free insulin 100nM 4h Bio2

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

characteristic: organism part

text: Mus musculus

text: Free insulin 100nM 4h Bio2


E-MTAB-12160:Free insulin 10nM 4h Bio1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KIS

text: public

characteristic: SRA accession

text: E-MTAB-12160:Free insulin 10nM 4h Bio1

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

characteristic: strain

text: Free insulin 10nM 4h Bio1


E-MTAB-12160:Free insulin 10nM 4h Bio2

characteristic: External Id

text: KIS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12160:Free insulin 10nM 4h Bio2

characteristic: Submitter Id

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

characteristic: common name

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: Free insulin 10nM 4h Bio2


E-MTAB-12160:Free insulin 10nM 4h Bio3

text: KIS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12160:Free insulin 10nM 4h Bio3

text: ArrayExpress

characteristic: broker name

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

characteristic: description

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: Free insulin 10nM 4h Bio3

characteristic: title


E-MTAB-12160:NR-1 10nM 4h Bio1

text: KIS

text: public

text: E-MTAB-12160:NR-1 10nM 4h Bio1

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: NR-1 10nM 4h Bio1


E-MTAB-12160:NR-1 10nM 4h Bio2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KIS

text: public

characteristic: SRA accession

text: E-MTAB-12160:NR-1 10nM 4h Bio2

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

characteristic: organism part

text: Mus musculus

text: NR-1 10nM 4h Bio2


E-MTAB-12160:NR-1 10nM 4h Bio3

characteristic: External Id

text: KIS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12160:NR-1 10nM 4h Bio3

characteristic: Submitter Id

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

characteristic: strain

text: NR-1 10nM 4h Bio3


E-MTAB-12160:NR-7 100nM 4h Bio1

text: KIS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12160:NR-7 100nM 4h Bio1

text: ArrayExpress

characteristic: broker name

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: NR-7 100nM 4h Bio1


E-MTAB-12160:NR-7 100nM 4h Bio2

text: KIS

text: public

text: E-MTAB-12160:NR-7 100nM 4h Bio2

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: NR-7 100nM 4h Bio2

characteristic: title


E-MTAB-12160:NR-7 10nM 4h Bio1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KIS

text: public

characteristic: SRA accession

text: E-MTAB-12160:NR-7 10nM 4h Bio1

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

text: NR-7 10nM 4h Bio1


E-MTAB-12160:NR-7 10nM 4h Bio2

characteristic: External Id

text: KIS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12160:NR-7 10nM 4h Bio2

characteristic: Submitter Id

text: ArrayExpress

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

characteristic: organism part

text: Mus musculus

text: NR-7 10nM 4h Bio2


E-MTAB-12160:NR-7 10nM 4h Bio3

text: KIS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12160:NR-7 10nM 4h Bio3

text: ArrayExpress

characteristic: broker name

text: immortalized preadipocyte cell line

text: brown adipocyte

text: house mouse

characteristic: common name

text: neonate

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular brown adipocyte tissue

text: Mus musculus

characteristic: strain

text: NR-7 10nM 4h Bio3


text: VANDERBILT UNIVERSITY

text: public

tag: Namespace:VANDERBILT UNIVERSITY

unit: week

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: The interscapular brown adipose tissue (iBAT) was harvested from mice following euthanasia using carbon dioxide at 5 liters per minute for 3 minutes. Prkd1 WT or brown adipose tissue KO (background: C/57Bl6) mice were maintained on chow diet and acclimated at thermoneutrality for 2 days (30 degrees Celsius) followed by either 8 hours or 4 days at 6 degrees Celsius in the Powers temperature regulated cabinet. iBAT was harvested and placed in 350 uL Trizol solution. The sample was prepared according to the Trizol User Reagent Guide through step 8. Following Trizol extraction, samples were placed on Qiagen RNA extraction columns according to the manufacturer's protocol until purified RNA was obtained. RNA was amplified using the SMART-Seq v4 Ultra Low Input RNA Kit (Takara), and cDNA libraries were constructed using the Low Input Library Prep Kit (Takara).

characteristic: description

text: adult

characteristic: developmental stage

text: cold temperature regimen

characteristic: environmental stress

text: Prkd1 -/-

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: interscapular fat pad

text: interscapular brown adipose tissue

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VANDERBILT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: adult

text: cold temperature regimen

text: wild type genotype

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: interscapular fat pad

text: interscapular brown adipose tissue

text: Mus musculus

text: male

characteristic: title


text: VANDERBILT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Prkd1 -/-

text: not applicable

text: Mus musculus

text: Mus musculus

text: interscapular fat pad

characteristic: organism part

text: interscapular brown adipose tissue

text: Mus musculus

text: male

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VANDERBILT UNIVERSITY

text: public

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: interscapular fat pad

text: interscapular brown adipose tissue

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex


text: unidentified

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: unidentified

text: unidentified

characteristic: organism

text: unidentified

characteristic: title


Clostridium neonatale 202

characteristic: CNEO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Paris

text: public

text: Clostridium neonatale 202

tag: Namespace:University of Paris

characteristic: Submitter Id

text: Human gut

characteristic: description

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale 202


Clostridium neonatale C25

text: University of Paris

text: public

text: Clostridium neonatale C25

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C25


Clostridium neonatale C55

text: University of Paris

text: public

text: Clostridium neonatale C55

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C55


Clostridium neonatale C6

text: University of Paris

text: public

text: Clostridium neonatale C6

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C6


Clostridium neonatale C7

text: University of Paris

text: public

text: Clostridium neonatale C7

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C7


Clostridium neonatale C8.2

text: University of Paris

text: public

text: Clostridium neonatale C8.2

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C8.2


Clostridium neonatale C38

text: University of Paris

text: public

text: Clostridium neonatale C38

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C38


Clostridium neonatale C40

text: University of Paris

text: public

text: Clostridium neonatale C40

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C40


Clostridium neonatale C58

text: University of Paris

text: public

text: Clostridium neonatale C58

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C58


Clostridium neonatale C47

text: University of Paris

text: public

text: Clostridium neonatale C47

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C47


Clostridium neonatale C51

text: University of Paris

text: public

text: Clostridium neonatale C51

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C51


Clostridium neonatale C50

text: University of Paris

text: public

text: Clostridium neonatale C50

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C50


Clostridium neonatale C20

text: University of Paris

text: public

text: Clostridium neonatale C20

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C20


Clostridium neonatale C199

text: University of Paris

text: public

text: Clostridium neonatale C199

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C199


Clostridium neonatale C191

text: University of Paris

text: public

text: Clostridium neonatale C191

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C191


Clostridium neonatale C16

text: University of Paris

text: public

text: Clostridium neonatale C16

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C16


Clostridium neonatale C34

text: University of Paris

text: public

text: Clostridium neonatale C34

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale C34


Clostridium neonatale E8

text: Universite Paris Cite

text: public

text: Clostridium neonatale E8

tag: Namespace:Universite Paris Cite

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E8


Clostridium neonatale E18

text: University of Paris

text: public

text: Clostridium neonatale E18

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E18


Clostridium neonatale E32

text: Universite Paris Cite

text: public

text: Clostridium neonatale E32

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E32


Clostridium neonatale E24

text: University of Paris

text: public

text: Clostridium neonatale E24

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E24


Clostridium neonatale E10

text: Universite Paris Cite

text: public

text: Clostridium neonatale E10

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E10


Clostridium neonatale E20

text: University of Paris

text: public

text: Clostridium neonatale E20

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E20


Clostridium neonatale E34

text: Universite Paris Cite

text: public

text: Clostridium neonatale E34

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E34


Clostridium neonatale E15

text: Universite Paris Cite

text: public

text: Clostridium neonatale E15

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E15


Clostridium neonatale E16

text: Universite Paris Cite

text: public

text: Clostridium neonatale E16

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E16


Clostridium neonatale E13

text: Universite Paris Cite

text: public

text: Clostridium neonatale E13

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E13


Clostridium neonatale E11

text: Universite Paris Cite

text: public

text: Clostridium neonatale E11

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E11


Clostridium neonatale E7

text: Universite Paris Cite

text: public

text: Clostridium neonatale E7

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E7


Clostridium neonatale E1

text: University of Paris

text: public

text: Clostridium neonatale E1

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E1


Clostridium neonatale E31

text: Universite Paris Cite

text: public

text: Clostridium neonatale E31

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale E31


Clostridium neonatale PM104

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM104

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM104


Clostridium neonatale PM106

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM106

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM106


Clostridium neonatale PM111

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM111

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM111


Clostridium neonatale PM116

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM116

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM116


Clostridium neonatale PM120

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM120

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM120


Clostridium neonatale PM124

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM124

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM124


Clostridium neonatale PM68

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM68

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM68


Clostridium neonatale PM77

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM77

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM77


Clostridium neonatale PM81

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM81

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM81


Clostridium neonatale PM101

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM101

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM101


Clostridium neonatale PM102

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM102

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM102


Clostridium neonatale PM103

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM103

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM103


Clostridium neonatale PM74

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM74

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM74


Clostridium neonatale PM42

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM42

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM42


Clostridium neonatale PM84

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM84

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM84


Clostridium neonatale PM54

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM54

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM54


Clostridium neonatale PM53

text: Universite Paris Cite

text: public

text: Clostridium neonatale PM53

text: Human gut

text: Clostridium neonatale

text: Clostridium neonatale

text: Clostridium neonatale PM53


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


text: unidentified

text: SC

text: public

text: unidentified

text: unidentified

text: unidentified


text: public

tag: Namespace:The Second Affiliated Hospital, Chongqing Medical University

text: enality

characteristic: broad-scale environmental context

characteristic: collection date

text: Mediastinal lymph node

text: biological entity

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ward

characteristic: local environmental context

text: human metagenome

characteristic: project name

text: human metagenome

text: Illumina HiSeq 2000

characteristic: sequencing method

text: Tissue


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

text: Nick Davison

text: Scottish Marine Animal Stranding Scheme University of Glasgow

characteristic: collecting institution

text: long-finned pilot whale

text: United Kingdom

text: Scotland | Highland | Skye | Loch na Cuilce | Coruisk

characteristic: geographic location (region and locality)

text: Beach

characteristic: habitat

text: Nick Davison

text: adult

characteristic: lifestage

text: Globicephala melas

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Globicephala melas

text: MALE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid

type: derived from


text: mixed

characteristic: ArrayExpress-SEX

text: Auanema freiburgensis

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Mixed

characteristic: GENDER

text: SC

text: public

characteristic: Submitter Id

text: Auanema freiburgensis

characteristic: common name

text: Auanema freiburgensis

text: Auanema freiburgensis

characteristic: title


text: hermaphrodite

text: Rhabditophanes sp. KR3021

text: ED21.1 strain2

characteristic: External Id

text: Hermaphrodite

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rhabditophanes sp. KR3021

text: Rhabditophanes sp. KR3021

text: Rhabditophanes sp. KR3021


text: mixed

text: Litoditis marina

text: Mixed

text: SC

text: public

text: Litoditis marina

text: Litoditis marina

characteristic: organism

text: Litoditis marina


text: mixed

text: Auanema sp. APS25

text: Mixed

text: SC

text: public

text: Auanema sp. APS25

text: Auanema sp. APS25

text: Auanema sp. APS25


text: mixed

text: Propanagrolaimus sp. LC92

text: Mixed

text: SC

text: public

text: Propanagrolaimus sp. LC92

text: Propanagrolaimus sp. LC92

text: Propanagrolaimus sp. LC92


text: Cell Line

characteristic: ArrayExpress-PHENOTYPE

text: unknown

text: Homo sapiens

text: Unknown

text: SC

text: public

text: Cell Line

characteristic: PHENOTYPE

text: human

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:Centre for Interdisciplinary Research in Animal Health (CIISA), Faculty of Veterinary Medicine, University of Lisbon, Lisbon, Portugal

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: isolate

text: Faeces

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Centre for Interdisciplinary Research in Animal Health (CIISA), Faculty of Veterinary Medicine, University of Lisbon, Lisbon, Portugal

text: public

characteristic: Submitter Id

text: United Kingdom

text: diseased

text: Canis lupus familiaris

text: Faeces

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: University of British Columbia

characteristic: INSDC center name

text: public

tag: Namespace:University of British Columbia

text: Control mouse on Day 0 (pre-intervention, no deficiencies)

characteristic: description

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 1 Day 0

characteristic: title


text: University of British Columbia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 2 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: Fecal

text: CON Mouse 3 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 4 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 5 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 6 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 7 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 8 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 9 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 10 Day 0


text: University of British Columbia

text: public

text: Low-micronutrient mouse on Day 0 (pre-intervention, no deficiencies)

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 1 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 2 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 3 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 4 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 5 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 6 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 7 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 8 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 9 Day 0


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 10 Day 0


text: University of British Columbia

text: public

text: Control mouse on Day 28 of intervention (no dietary deficiencies)

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 1 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 2 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 3 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 4 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 5 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 6 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 7 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 8 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 9 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: CON Mouse 10 Day 28


text: University of British Columbia

text: public

text: Low-Micronutrient mouse on Day 28 of intervention (low-micronutrient diet)

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 1 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 2 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 3 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 4 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 5 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 6 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 7 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 8 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 9 Day 28


text: University of British Columbia

text: public

text: mouse gut metagenome

text: mouse gut metagenome

text: Fecal

text: LM Mouse 10 Day 28


text: public

tag: Namespace:Globe Institute, University of Copenhagen

text: ringed seal sampled from Greenland

text: Greenland

characteristic: geographic location (country and/or sea)

text: Ittoqqortoormiit

characteristic: geographic location (region and locality)

text: Pusa hispida hispida

text: Pusa hispida hispida

text: Ringed seal


text: Globe Institute, University of Copenhagen

text: public

text: ringed seal sampled from Greenland

text: Greenland

text: Ittoqqortoormiit

text: Pusa hispida hispida

text: Pusa hispida hispida

text: Ringed seal


text: public

text: ringed seal sampled from Greenland

text: Greenland

text: Qaanaaq

text: Pusa hispida hispida

text: Pusa hispida hispida

text: Ringed seal


text: public

text: ringed seal sampled from Greenland

text: Greenland

text: Qeqertarsuaq

text: Pusa hispida hispida

text: Pusa hispida hispida

text: Ringed seal


text: public

text: ringed seal sampled from Greenland

text: Greenland

text: Kangia

text: 69.15, -50.89

text: Pusa hispida hispida

text: Pusa hispida hispida

text: Ringed seal


text: public

text: ringed seal sampled from Canada

text: Canada

text: Ulukhaktok

text: Pusa hispida hispida

text: Pusa hispida hispida

text: Ringed seal


text: public

text: ringed seal sampled from Canada

text: Canada

text: Arviat

text: Pusa hispida hispida

text: Pusa hispida hispida

text: Ringed seal


text: Queen's University Belfast

text: public

tag: Namespace:Queen's University Belfast

text: house mouse

characteristic: common name

text: Control � endpoint

text: Mus musculus

text: Mus musculus


text: Queen's University Belfast

text: public

text: house mouse

text: Pork � endpoint

text: Mus musculus

text: Mus musculus


text: Queen's University Belfast

text: public

text: house mouse

text: Sausage � endpoint

text: Mus musculus

text: Mus musculus


text: Queen's University Belfast

text: public

text: house mouse

text: Frankfurter � endpoint

text: Mus musculus

text: Mus musculus


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Laboratory of Genetics & Genomics of Marine Resources and Environment (GenoDREAM) Dept. Biological, Geological & Environmental Sciences (BiGeA) Alma Mater Studiorum - Università di Bologna

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

text: Italy

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: South Ionian Sea | Central MED

text: Marine

characteristic: habitat

text: Alessia Cariani

text: juvenile

characteristic: lifestage

text: Thunnus thynnus

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: Thunnus thynnus

text: NOT COLLECTED

characteristic: sex

text: ERGA AV MT 03

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Atlantic bluefin tuna

text: Italy

text: not collected

text: not collected

text: South Ionian Sea | Central MED

text: Marine

text: Alessia Cariani

text: juvenile

text: Thunnus thynnus

text: WHOLE ORGANISM

text: ERGA

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 06

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

characteristic: common name

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: South Ionian Sea | Central MED

characteristic: geographic location (region and locality)

text: Marine

characteristic: habitat

text: Alessia Cariani

text: juvenile

characteristic: lifestage

text: Thunnus thynnus

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 04

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Atlantic bluefin tuna

text: Italy

text: not collected

text: not collected

text: South Ionian Sea | Central MED

text: Marine

text: Alessia Cariani

text: juvenile

text: Thunnus thynnus

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: Thunnus thynnus

text: NOT COLLECTED

characteristic: sex

text: ERGA AV MT 05

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

characteristic: common name

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

text: South Ionian Sea | Central MED

text: Marine

text: Alessia Cariani

text: juvenile

text: Thunnus thynnus

text: WHOLE ORGANISM

text: ERGA

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 07

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: ERGA AV MT 01

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Atlantic bluefin tuna

text: Italy

text: not collected

text: not collected

characteristic: geographic location (longitude)

text: South Ionian Sea | Central MED

characteristic: geographic location (region and locality)

text: Marine

characteristic: habitat

text: Alessia Cariani

text: juvenile

characteristic: lifestage

text: Thunnus thynnus

characteristic: organism

text: MUSCLE

text: ERGA

characteristic: sample derived from

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 03

text: N


text: Sanger Institute

characteristic: GAL

text: ERGA AV MT 04

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

text: Italy

text: not collected

text: not collected

text: South Ionian Sea | Central MED

text: Marine

text: Alessia Cariani

text: juvenile

text: Thunnus thynnus

text: MUSCLE

characteristic: organism part

text: ERGA

characteristic: project name

text: Thunnus thynnus

text: NOT COLLECTED

characteristic: sex

text: ERGA AV MT 06

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: ERGA AV MT 02

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Atlantic bluefin tuna

characteristic: common name

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: South Ionian Sea | Central MED

characteristic: geographic location (region and locality)

text: Marine

text: Alessia Cariani

text: juvenile

text: Thunnus thynnus

text: MUSCLE

text: ERGA

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 04

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: ERGA AV MT 03

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

text: Italy

text: not collected

text: not collected

text: South Ionian Sea | Central MED

text: Marine

characteristic: habitat

text: Alessia Cariani

text: juvenile

characteristic: lifestage

text: Thunnus thynnus

characteristic: organism

text: MUSCLE

characteristic: organism part

text: ERGA

characteristic: sample derived from

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 05

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: ERGA AV MT 05

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Atlantic bluefin tuna

characteristic: common name

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: South Ionian Sea | Central MED

text: Marine

text: Alessia Cariani

text: juvenile

text: Thunnus thynnus

text: MUSCLE

text: ERGA

characteristic: project name

text: Thunnus thynnus

text: NOT COLLECTED

characteristic: sex

text: ERGA AV MT 07

text: N

characteristic: symbiont

characteristic: tolid


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRAe (INRAe Montpellier)

text: public

tag: Namespace:INRAe (INRAe Montpellier)

characteristic: broad-scale environmental context

characteristic: collection date

text: northern house mosquito

text: Midgut metagenome of mosquito specimen

characteristic: description

text: organic material

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: Culex pipiens

characteristic: organism

text: Culex pipiens

text: Illumina HiSeq 4000

characteristic: sequencing method


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SEVILLA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF SEVILLA

characteristic: Submitter Id

text: Salmonella enterica isolated from a poultry farm at Salamanca

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: not provided

characteristic: isolate

text: Poultry farm

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Enteritidis

characteristic: serovar

characteristic: strain

text: Salmonella enterica SA191

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SEVILLA

text: public

characteristic: collection date

characteristic: description

text: Spain

text: not provided

text: Gallus gallus

text: not provided

text: Poultry farm

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Kentucky

text: Salmonella enterica SA192


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF SEVILLA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Spain

text: not provided

text: Gallus gallus

text: not provided

text: Poultry farm

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Bredeney

text: Salmonella enterica SA193


text: UNIVERSITY OF SEVILLA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella enterica isolated from hen feces

text: Tunisia

text: not provided

text: Gallus gallus

text: not provided

text: Hen feces

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Bredeney

text: Salmonella enterica TU194


text: UNIVERSITY OF SEVILLA

text: public

text: Tunisia

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: not provided

characteristic: isolate

text: Hen feces

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Enteritidis

text: Salmonella enterica TU195


name: SAMIN0000053-A test study for testing some thing

characteristic: ENA-FIRST-PUBLIC

text: KLE TEch

text: public

tag: Namespace:KLE TEch

text: mango

characteristic: common name

text: atet

text: Mangifera indica

text: Mangifera indica

text: A test study for testing some thing

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Division of Gastroenterology, IRCSS Casa Sollievo della Sofferenza, Opera di San Pio da Pietrelcina

text: ArrayExpress

characteristic: broker name

text: Homo sapiens hospitalised patient

characteristic: clinical history

text: Protocols: Each sample were collected with a rectal swabs according to manufacturer's instructions. Samples were treated with 500 μl of Lysis Buffer ATL (QIAGEN, Hilden, Germany) at 56°C for 10 min with 20 μl Proteinase K (Darmstadt, Germany) before DNA extraction. Microbial DNA was extracted from 500 μl of sample using Nimbus automatic extractor (Seegene Technologies, Korea) according to the manufacturer’s protocol. The V3-V4 hypervariable region of the bacterial 16S rRNA gene was amplified from total DNA according to the Illumina 16S Metagenomic Sequencing Library Preparation instructions, as previously described in Diamanti-Picchianti A, et al (Int J Mol Med ). In summary, the V3-V4 amplicon was obtained by PCR with universal primers, followed by purification. A second PCR was then performed to barcode the libraries using the Illumina dual-index system. Following a second step of purification, libraries were diluted to 4nM and pooled.

characteristic: description

text: adult

characteristic: developmental stage

characteristic: disease

text: mild

characteristic: disease staging

characteristic: infect

text: gut metagenome

text: gut metagenome

text: feces

characteristic: organism part

text: rectal swab

characteristic: sampling site

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Division of Gastroenterology, IRCSS Casa Sollievo della Sofferenza, Opera di San Pio da Pietrelcina

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Homo sapiens hospitalised patient

text: adult

text: mild

text: gut metagenome

characteristic: organism

text: gut metagenome

text: feces

text: rectal swab

text: gut metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: Homo sapiens hospitalised patient

characteristic: clinical history

text: adult

text: severe

text: gut metagenome

text: gut metagenome

text: feces

text: rectal swab

text: gut metagenome

characteristic: title


text: Quadram Institute Bioscience

text: public

text: NO

characteristic: Site

tag: Namespace:Quadram Institute Bioscience

text: Rowan

characteristic: common name

text: root metagenome

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: root

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: root metagenome

text: euroSoilMG

characteristic: project name

text: root metagenome

text: Illumina NovaSeq with 2 x 150 bp paired-end

characteristic: sequencing method

text: root

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: FI

characteristic: SRA accession

characteristic: Submitter Id

text: Grey Alder

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Finland

text: metagenome

text: root metagenome

characteristic: organism

text: euroSoilMG

text: root metagenome

text: root


text: Quadram Institute Bioscience

text: public

text: FI

characteristic: Site

text: Silver Brch

characteristic: common name

text: root metagenome

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: root

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: root metagenome

text: euroSoilMG

text: root metagenome

text: root

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: FI

text: Rowan

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Finland

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: root metagenome

text: euroSoilMG

characteristic: project name

text: root metagenome

characteristic: sequencing method

text: root

characteristic: soil environmental package


text: Quadram Institute Bioscience

characteristic: INSDC last update

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text: SE

characteristic: SRA accession

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characteristic: Submitter Id

text: Grey Alder

characteristic: common name

text: root metagenome

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: root

characteristic: environment (material)

text: Sweden

text: metagenome

text: root metagenome

characteristic: organism

text: euroSoilMG

text: root metagenome

text: root


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

text: SE

text: Silver Brch

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

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text: euroSoilMG

text: root metagenome

text: root

characteristic: title


text: Quadram Institute Bioscience

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characteristic: SRA accession

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text: Rowan

characteristic: common name

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Sweden

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: root metagenome

text: euroSoilMG

characteristic: project name

text: root metagenome

characteristic: sequencing method

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characteristic: soil environmental package


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Quadram Institute Bioscience

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text: public

text: SE

text: Black Alder

text: root metagenome

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: root

characteristic: environment (material)

text: Sweden

text: metagenome

text: root metagenome

characteristic: organism

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text: root metagenome

text: root


text: Quadram Institute Bioscience

characteristic: INSDC last update

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characteristic: INSDC status

text: DK

characteristic: SRA accession

characteristic: Site

characteristic: Submitter Id

text: Black Alder

characteristic: common name

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: root metagenome

text: euroSoilMG

text: root metagenome

text: root

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DK

text: Silver Brch

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Denmark

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: root metagenome

text: euroSoilMG

characteristic: project name

text: root metagenome

characteristic: sequencing method

text: root

characteristic: soil environmental package


text: Quadram Institute Bioscience

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DK

characteristic: SRA accession

characteristic: Site

characteristic: Submitter Id

text: Grey Alder

characteristic: common name

text: root metagenome

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: root

characteristic: environment (material)

text: Denmark

text: metagenome

text: root metagenome

characteristic: organism

text: euroSoilMG

text: root metagenome

text: root


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

text: DK

text: Rowan

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: root metagenome

text: euroSoilMG

text: root metagenome

text: root

characteristic: title


text: Quadram Institute Bioscience

characteristic: INSDC last update

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characteristic: INSDC status

text: DE

characteristic: SRA accession

characteristic: Site

characteristic: Submitter Id

text: Grey Alder

characteristic: common name

text: root metagenome

text: terrestrial biome

text: Forest

text: root

text: Germany

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: root metagenome

text: euroSoilMG

characteristic: project name

text: root metagenome

characteristic: sequencing method

text: root

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

text: DE

text: Black Alder

text: root metagenome

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: root

characteristic: environment (material)

text: Germany

text: metagenome

text: root metagenome

characteristic: organism

text: euroSoilMG

text: root metagenome

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text: Quadram Institute Bioscience

characteristic: INSDC last update

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characteristic: SRA accession

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text: Rowan

characteristic: common name

text: root metagenome

text: terrestrial biome

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text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

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text: euroSoilMG

text: root metagenome

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characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

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text: Silver Brch

text: root metagenome

text: terrestrial biome

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text: root

text: Germany

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: root metagenome

text: euroSoilMG

characteristic: project name

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characteristic: sequencing method

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text: Quadram Institute Bioscience

characteristic: INSDC last update

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characteristic: INSDC status

text: IT

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text: Grey Alder

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text: root metagenome

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text: terrestrial biome

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: root

characteristic: environment (material)

text: Italy

text: metagenome

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characteristic: organism

text: euroSoilMG

text: root metagenome

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Quadram Institute Bioscience

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text: public

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text: Black Alder

text: root metagenome

text: terrestrial biome

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text: root

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

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text: euroSoilMG

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text: Quadram Institute Bioscience

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text: Silver Brch

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characteristic: geographic location (longitude)

text: metagenome

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characteristic: project name

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text: root

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

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characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: Forest

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text: root

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text: Italy

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characteristic: organism

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text: Quadram Institute Bioscience

characteristic: INSDC last update

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text: IT

characteristic: SRA accession

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characteristic: Submitter Id

text: Wild Service Tree

characteristic: common name

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text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

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text: metagenome

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text: euroSoilMG

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

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text: Serviuce tree

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text: terrestrial biome

text: Forest

text: root

text: Italy

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

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text: euroSoilMG

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text: Quadram Institute Bioscience

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characteristic: INSDC status

text: NO

characteristic: SRA accession

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text: soil metagenome

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text: soil metagenome

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text: terrestrial biome

characteristic: environment (biome)

text: Forest

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text: soil

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text: Norway

text: metagenome

text: soil metagenome

characteristic: organism

text: euroSoilMG

text: soil metagenome

text: soil


characteristic: ENA-CHECKLIST

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text: Quadram Institute Bioscience

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text: public

text: FI

text: soil metagenome

text: soil metagenome

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text: Forest

text: soil

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: euroSoilMG

text: soil metagenome

text: soil

characteristic: title