E-MTAB-13307:Sample 71

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 71

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 71

characteristic: title


E-MTAB-13307:Sample 72

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 72

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: Whole blood was collected at the time of recruitment in Tempus tubes total RNA was isolated with the TempusTM Spin RNA Isolation Kit (ThermoFisher Scientific). RNA samples were stored at −80 °C until further analysis. After additional DNAse treatment, library preparation at paired end reads was conducted using the Illumina's TruSeq® RNA Sample Preparation Kit; ribosomal and globin RNA depletion

text: adult

characteristic: developmental stage

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

characteristic: pathogen

text: Homo sapiens

text: female

characteristic: sex

text: Sample 72


E-MTAB-13307:Sample 73

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 73

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 73

characteristic: title


E-MTAB-13307:Sample 74

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 74

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 74


E-MTAB-13307:Sample 75

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 75

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

characteristic: pathogen

text: Homo sapiens

text: female

characteristic: sex

text: Sample 75


E-MTAB-13307:Sample 76

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 76

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 76

characteristic: title


E-MTAB-13307:Sample 77

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 77

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 77


E-MTAB-13307:Sample 78

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 78

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

characteristic: pathogen

text: Homo sapiens

text: female

characteristic: sex

text: Sample 78


E-MTAB-13307:Sample 79

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 79

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 79

characteristic: title


E-MTAB-13307:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 8

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-13307:Sample 80

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 80

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

characteristic: pathogen

text: Homo sapiens

text: male

characteristic: sex

text: Sample 80


E-MTAB-13307:Sample 81

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 81

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 81

characteristic: title


E-MTAB-13307:Sample 82

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 82

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 82


E-MTAB-13307:Sample 83

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 83

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

characteristic: pathogen

text: Homo sapiens

text: female

characteristic: sex

text: Sample 83


E-MTAB-13307:Sample 84

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 84

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 84

characteristic: title


E-MTAB-13307:Sample 85

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 85

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 85


E-MTAB-13307:Sample 86

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 86

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

characteristic: pathogen

text: Homo sapiens

text: female

characteristic: sex

text: Sample 86


E-MTAB-13307:Sample 87

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 87

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 87

characteristic: title


E-MTAB-13307:Sample 88

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 88

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Moraxella catarrhalis

text: Homo sapiens

text: male

text: Sample 88


E-MTAB-13307:Sample 89

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 89

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: DB

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Staphylococcus aureus

characteristic: pathogen

text: Homo sapiens

text: female

characteristic: sex

text: Sample 89


E-MTAB-13307:Sample 9

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 9

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 9

characteristic: title


E-MTAB-13307:Sample 90

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 90

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Enterococcus casseliflavus

text: Homo sapiens

text: female

text: Sample 90


E-MTAB-13307:Sample 91

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 91

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: DB

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Klebsiella oxytoca

characteristic: pathogen

text: Homo sapiens

text: male

characteristic: sex

text: Sample 91


E-MTAB-13307:Sample 92

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 92

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Staphylococcus aureus

text: Homo sapiens

text: male

text: Sample 92

characteristic: title


E-MTAB-13307:Sample 93

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 93

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Klebsiella pneumoniae

text: Homo sapiens

text: female

text: Sample 93


E-MTAB-13307:Sample 94

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 94

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: DB

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Klebsiella pneumoniae

characteristic: pathogen

text: Homo sapiens

text: male

characteristic: sex

text: Sample 94


E-MTAB-13307:Sample 95

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 95

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Streptococcus mitis

text: Homo sapiens

text: male

text: Sample 95

characteristic: title


E-MTAB-13307:Sample 96

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 96

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Clostridium septicum

text: Homo sapiens

text: male

text: Sample 96


E-MTAB-13307:Sample 97

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 97

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: DB

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Streptococcus mitis

characteristic: pathogen

text: Homo sapiens

text: female

characteristic: sex

text: Sample 97


E-MTAB-13307:Sample 98

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13307:Sample 98

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Haemophilus parainfluenzae

text: Homo sapiens

text: female

text: Sample 98

characteristic: title


E-MTAB-13307:Sample 99

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13307:Sample 99

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: adult

text: DB

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Enterococcus faecalis

text: Homo sapiens

text: female

text: Sample 99


text: public

tag: Namespace:Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Diagnostic Virology

text: 6 to 8

unit: week

text: ArrayExpress

text: not collected

text: house mouse

characteristic: common name

text: Protocols: Lung or spleen were harvested in PBS (for lung) or complete RPMI medium (cRPMI; RPMI-1640 supplemented with 1 mM L-glutamine, 0.5 mM sodium pyruvate, 10 % FCS, 100 U/ml penicillin, 0.1 mg/ml streptomycin and 25 mM HEPES) for flow cytometry, directly homogenized in PBS supplemented with protease (cOmplete™; Roche, Basel, Switzerland) and phosphatase (PhosSTOPTM; Roche, Basel, Switzerland) inhibitors for cytokine measurements or homogenized in TRIzol LS Reagent (Invitrogen, Waltham, MA, USA) for further RNA extraction. Tissue was homogenized using the gentleMACS™ Dissociator (Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany) and stored at -80 C. RNA extraction was done on a KingFisher Flex instrument (Thermo Fisher Scientific, Germany) using the RNAdvance Tissue Kit (Beckman Coulter, Germany) and following the manufacturer’s instructions. A DNA-digestion step was included in the protocol using the RNase-Free DNase Set (Qiagen, Germany). From 5 µg of the total RNA the poly(A)+ fraction was separated using the Dynabeads mRNA DIRECT Micro Kit (Invitrogen) following the manufactures instructions. The poly(A)+ RNA was subsequently used for library preparation with the Collibri Stranded RNA Library Prep Kit for Illumina Systems (Invitrogen) following the manufactures instructions.

text: juvenile

characteristic: developmental stage

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

characteristic: infect

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

text: Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Diagnostic Virology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6 to 8

text: ArrayExpress

text: not collected

text: house mouse

characteristic: description

text: juvenile

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: 6 to 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: juvenile

characteristic: developmental stage

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: 6 to 8

text: ArrayExpress

text: not collected

text: house mouse

text: juvenile

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: SARS-CoV-2 Beta (lineage B.1.351)

characteristic: infect

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6 to 8

text: ArrayExpress

text: not collected

text: house mouse

characteristic: description

text: juvenile

text: not collected

text: SARS-CoV-2 Beta (lineage B.1.351)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: 6 to 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: juvenile

characteristic: developmental stage

text: not collected

text: SARS-CoV-2 BavPat1 (lineage B.1)

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 6 to 8

text: ArrayExpress

text: not collected

text: house mouse

text: juvenile

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: SARS-CoV-2 BavPat1 (lineage B.1)

characteristic: infect

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NMBU, Norwegian University of Life Sciences

text: ArrayExpress

text: not collected

text: Protocols: Fungal mass was cultivated and collected according to Dzurendova et al. (2021), section 2.2: Dzurendova, S., Zimmermann, B., Kohler, A., Reitzel, K., Nielsen, U. G., Dupuy--Galet, B. X., . . . Shapaval, V. (2021). Calcium Affects Polyphosphate and Lipid Accumulation in Mucoromycota Fungi. Journal of Fungi, 7(4), 300. https://doi.org/10.3390/jof7040300 RNA extraction was carried out using the RNeasy Plus Mini kit (Qiagen, Venlo, The Netherlands). Library preparation consisted of rRNA removal (polyA capture), followed by enrichment of single-stranded messenger RNAs (mRNAs) and reverse transcription to obtain complementary DNA (cDNA).

characteristic: description

text: not collected

text: no calcium, reference concentration of phosphorus

characteristic: growth condition

text: not applicable

text: Mucor circinelloides

characteristic: organism

text: Mucor circinelloides

text: whole organism

text: Mucor circinelloides

text: VI 04473

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NMBU, Norwegian University of Life Sciences

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mucor circinelloides

text: Mucor circinelloides

text: whole organism

text: Mucor circinelloides

text: VI 04473


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: not collected

text: not collected

text: 0.1 g/L of calcium, reference concentration of phosphorus

text: not applicable

characteristic: isolate

text: Mucor circinelloides

text: Mucor circinelloides

text: whole organism

characteristic: organism part

text: Mucor circinelloides

text: VI 04473


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: not collected

text: no calcium, 4 times reference concentration of phosphorus

text: not applicable

text: Mucor circinelloides

text: Mucor circinelloides

text: whole organism

text: Mucor circinelloides

text: VI 04473


text: public

text: ArrayExpress

text: not collected

characteristic: description

text: not collected

text: 0.1 g/L of calcium, 4 times reference concentration of phosphorus

characteristic: growth condition

text: not applicable

text: Mucor circinelloides

characteristic: organism

text: Mucor circinelloides

text: whole organism

text: Mucor circinelloides

text: VI 04473

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

text: not collected

text: no calcium, half reference concentration of phosphorus

text: not applicable

text: Mucor circinelloides

text: Mucor circinelloides

text: whole organism

text: Mucor circinelloides

text: VI 04473

characteristic: title


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: not collected

characteristic: geographic location (country and/or sea)

text: 0.1 g/L of calcium, half reference concentration of phosphorus

text: not applicable

text: Mucor circinelloides

text: Mucor circinelloides

text: whole organism

text: Mucor circinelloides

text: VI 04473


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: restricted access

text: Streptococcus pneumoniae

characteristic: common name

text: restricted access

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: restricted access

text: Streptococcus pneumoniae

text: restricted access

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: GPS_ZA_WVI_ 1925428


text: public

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Denmark

text: not provided

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Denmark

characteristic: geographic location (country and/or sea)

text: not provided

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


text: University of Zurich

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Zurich

text: Recombinant

characteristic: description

text: Switzerland

text: not collected

text: Sus scrofa domesticus

text: rectal swab

text: Chlamydia suis

text: Chlamydia suis

text: Recombinant


text: University of Zurich

text: public

text: Rifamycin-resistant mutated strain

text: Switzerland

text: not collected

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: isolate

text: rectal swab

text: Chlamydia suis

text: Chlamydia suis

text: Rifamycin-resistant mutated strain


characteristic: ENA-CHECKLIST

text: University of Zurich

text: public

text: Rifampicin-resistant mutated strain

text: Switzerland

text: not collected

text: Sus scrofa domesticus

text: rectal swab

text: Chlamydia suis

characteristic: organism

text: Chlamydia suis

text: Rifampicin-resistant mutated strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

text: homo sapien

text: not collected

characteristic: host sex

characteristic: host subject id


characteristic: External Id

text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collection date

text: not collected

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: title


characteristic: ENA-CHECKLIST

text: EASY

text: Salmonidae

characteristic: Family

text: Coregonus

characteristic: Genus

text: public

characteristic: INSDC status

text: Visual inspection

text: Salmoniformes

text: Flash frozen

text: Leif Andersson

text: Uppsala University

characteristic: SRA accession

text: ena-SAMPLE-TAB-30-08-2023-09:12:46:619-16565

tag: Namespace:National Bioinformatics Infrastructure Sweden

text: about 3 hours

characteristic: broker name

text: Leif Andersson

text: Uppsala University

text: vendace

characteristic: common name

characteristic: depth

text: Specimen collected as a representative individual for its species in the VR-EBP project for purpose of WGS and genome annotation

characteristic: description

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sela�n

text: Freshwater lake

characteristic: habitat

text: Leif Andersson

text: Uppsala University

text: adult

characteristic: lifestage

text: Coregonus albula

characteristic: organism

text: liver tissue

characteristic: organism part

characteristic: project name

text: Fishing with net

characteristic: sample collection device or method

text: Coregonus albula

text: Male

characteristic: sex

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: Submitter Id

characteristic: collection date

text: isolate obtained from a human listeriosis case in Germany

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes

characteristic: title


text: EASY

text: Salmonidae

characteristic: Family

text: Coregonus

characteristic: Genus

text: National Bioinformatics Infrastructure Sweden

text: public

characteristic: INSDC status

text: Visual inspection

text: Salmoniformes

text: Flash frozen

text: Leif Andersson

text: Uppsala University

characteristic: SRA accession

text: ena-SAMPLE-TAB-30-08-2023-10:09:35:631-16571

text: about 3 hours

characteristic: broker name

text: Leif Andersson

text: Uppsala University

characteristic: collecting institution

text: vendace

characteristic: common name

characteristic: depth

characteristic: description

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sela�n

characteristic: geographic location (region and locality)

text: Freshwater lake

characteristic: habitat

text: Leif Andersson

text: Uppsala University

text: adult

characteristic: lifestage

text: Coregonus albula

characteristic: organism

text: gonad tissue

characteristic: organism part

characteristic: project name

text: Fishing with net

characteristic: sample collection device or method

text: Coregonus albula

text: Male

characteristic: sex

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:The First Affiliated Hospital, Zheng Zhou University.

characteristic: Submitter Id

characteristic: collection date

text: human metagenome

text: China

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: human metagenome

characteristic: title


text: The First Affiliated Hospital, Zheng Zhou University.

text: public

text: human metagenome

characteristic: description

text: China

text: metagenome

characteristic: organism

text: metagenome

text: human metagenome


text: public

tag: Namespace:Bernhard Nocht Institute for Tropical Medicine

text: LNR-TB

characteristic: collecting institution

text: missing

characteristic: collector name

text: plasma

text: Sao Tome and Principe

text: Agua Grande District

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: missing: third party data

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: missing: third party data

characteristic: host sex

text: missing

characteristic: host subject id

characteristic: isolate

text: dengue virus type 3

text: dengue virus type 3

characteristic: serotype (required for a seropositive sample)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bernhard Nocht Institute for Tropical Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LNR-TB

text: missing

text: plasma

text: Sao Tome and Principe

text: Agua Grande District

text: human

text: missing: third party data

text: Homo sapiens

text: missing: third party data

text: missing

text: dengue virus type 3

text: dengue virus type 3


text: EASY

text: Salmonidae

characteristic: Family

text: Coregonus

characteristic: Genus

text: public

text: Visual inspection

text: Salmoniformes

text: Flash frozen

text: Leif Andersson

text: Uppsala University

text: ena-SAMPLE-TAB-30-08-2023-11:45:22:045-16971

characteristic: Submitter Id

text: about 3 hours

characteristic: broker name

text: Leif Andersson

text: Uppsala University

characteristic: collecting institution

characteristic: collection date

text: vendace

characteristic: common name

characteristic: depth

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sela�n

characteristic: geographic location (region and locality)

text: Freshwater lake

characteristic: habitat

text: Leif Andersson

text: Uppsala University

text: adult

characteristic: lifestage

text: Coregonus albula

characteristic: organism

text: spleen tissue

characteristic: organism part

characteristic: project name

text: Fishing with net

characteristic: sample collection device or method

text: Coregonus albula

text: Male

characteristic: sex

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Bielefeld University, Center for Biotechnology (CeBiTec), Universitätsstraße 27,  33615, Bielefeld, Germany Bielefeld University, Medical Faculty OWL Universitätsstraße 27,  33615, Bielefeld, Germany

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Protocols: Cells were cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 1.5 mM HOCl stress. Bacteria were harvested fast centrifugation. The pellets were immediately frozen in liquid nitrogen and stored at -80°C. Staphylococcus aureus USA300 was cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 Staphylococcus aureus USA300 was cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 without any treatment Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 ribolyzer followed by RNA isolation using the acid phenol extraction protocol. The RNA quality was approved by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was applied to prepare the cDNA libraries.

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

text: Staphylococcus aureus

characteristic: strain


text: Bielefeld University, Center for Biotechnology (CeBiTec), Universitätsstraße 27,  33615, Bielefeld, Germany Bielefeld University, Medical Faculty OWL Universitätsstraße 27,  33615, Bielefeld, Germany

text: public

text: ArrayExpress

text: not collected

characteristic: description

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: whole organism

characteristic: organism part

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

text: Protocols: Cells were cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 1.5 mM HOCl stress. Bacteria were harvested fast centrifugation. The pellets were immediately frozen in liquid nitrogen and stored at -80°C. Staphylococcus aureus USA300 was cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 Staphylococcus aureus USA300 was cultivated in RPMI medium in 3 biological replicates and was exposed/treated 30 min with 1.5 mM in RPMI HOCl stress at an OD500 of 0.5 Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 ribolyzer followed by RNA isolation using the acid phenol extraction protocol. The RNA quality was approved by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was applied to prepare the cDNA libraries.

text: HOCl-induced stress

text: wild type genotype

text: not collected

text: not applicable

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

text: Staphylococcus aureus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: Protocols: Cells were cultivated in LB medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 176 μM neutrophil-derived oxidant hypothiocyanous acid (HOSCN) stress. Bacteria were harvested fast centrifugation. The pellets were immediately frozen in liquid nitrogen and stored at -80°C. Staphylococcus aureus COL was cultivated in LB medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 1176 μM neutrophil-derived oxidant hypothiocyanous acid (HOSCN) stress Staphylococcus aureus COL was cultivated in LB medium in 3 biological replicates and harvested at an OD500 of 0.5 without any treatment Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 ribolyzer followed by RNA isolation using the acid phenol extraction protocol. The RNA quality was approved by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was applied to prepare the cDNA libraries.

text: wild type genotype

text: not collected

text: not applicable

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

text: Staphylococcus aureus

text: COL


text: public

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Protocols: Cells were cultivated in LB medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 176 μM neutrophil-derived oxidant hypothiocyanous acid (HOSCN) stress. Bacteria were harvested fast centrifugation. The pellets were immediately frozen in liquid nitrogen and stored at -80°C. Staphylococcus aureus COL was cultivated in LB medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 1176 μM neutrophil-derived oxidant hypothiocyanous acid (HOSCN) stress Staphylococcus aureus COL was cultivated in LB medium in 3 biological replicates and was exposed/treated 30 min with 176 μM neutrophil-derived oxidant hypothiocyanous acid (HOSCN) stress at an OD500 of 0.5 Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 ribolyzer followed by RNA isolation using the acid phenol extraction protocol. The RNA quality was approved by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was applied to prepare the cDNA libraries.

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

text: Staphylococcus aureus

text: COL


text: public

text: ArrayExpress

text: not collected

characteristic: description

text: neutrophil-derived oxidant hypothiocyanous acid

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: whole organism

characteristic: organism part

text: Staphylococcus aureus

text: COL

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: SampleName: I-A1-d0-FP; Internal_Experiment: 16S Sequncing; Location: Fecal Pellet; Mouse: 1 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

characteristic: host

text: mouse gut metagenome

text: mouse gut metagenome

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SampleName: I-A2-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 2 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: collection date

text: SampleName: I-A3-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 3 ; Mikrobiota: SPF Related_figure: 1B

characteristic: description

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: I-A4-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 4 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: I-A5-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 5 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-A1-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 6 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-A2-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 7 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-A3-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 8 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-A5-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 9 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-A1-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 10 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-A2-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 11 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-A3-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 12 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-A4-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 13 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-A5-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 14 ; Mikrobiota: SPF Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: I-D16-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 1 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: I-D17-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 2 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: I-D18-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 3 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: I-D19-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 4 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: I-D20-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal Pellet; Mouse: 5 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-D16-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 6 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-D17-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 7 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-D18-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 8 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-D19-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 9 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: II-D20-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 10 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-D16-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 11 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-D17-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 12 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-D18-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 13 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-D19-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 14 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: III-D20-d0-FP; Internal_Experiment: 16S Sequncing ; Location: Fecal pellet; Mouse: 15 ; Mikrobiota: Wildling Related_figure: 1B

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W1; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 1 ; Mikrobiota: Wildling Related_figure: S1

text: feces

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W2; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 2 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W3; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 3 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W4; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 4 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W5; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 5 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W6; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 6 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W7; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 7 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W8; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 8 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W9; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 9 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: CC_W10; Internal_Experiment: ITSseq Sequncing ; Location: Cecum content; Mouse: 10 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W1; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 1 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W2; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 2 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W3; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 3 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W4; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 4 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W5; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 5 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W6; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 6 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W7; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 7 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W8; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 8 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W9; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 9 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: SampleName: FP_W10; Internal_Experiment: ITSseq Sequncing ; Location: Fecal Pellet; Mouse: 10 ; Mikrobiota: Wildling Related_figure: S1

text: cecum content

text: Yes

text: Germany:Braunschweig

text: Germany

text: Mus musculus

text: mouse gut metagenome

text: mouse gut metagenome


E-MTAB-13315:Sample 1

text: School of Biomedical Sciences

text: public

text: E-MTAB-13315:Sample 1

tag: Namespace:School of Biomedical Sciences

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

text: Protocols: Soleus muscle isolated from mice and flash frozen in liquid nitrogen miRNeasy mini kit TruSeq Stranded mRNA-seq prep

text: Abca1 and Abcg1 floxed (fl/fl)

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: soleus muscle

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: Sample 1


E-MTAB-13315:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Biomedical Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13315:Sample 10

text: ArrayExpress

text: not collected

text: house mouse

text: Abca1 and Abcg1 double knockout (beta-DKO)

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 10

characteristic: title


E-MTAB-13315:Sample 11

text: School of Biomedical Sciences

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13315:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 11


E-MTAB-13315:Sample 12

text: School of Biomedical Sciences

text: public

text: E-MTAB-13315:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 12


E-MTAB-13315:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Biomedical Sciences

characteristic: INSDC center name

text: public

text: E-MTAB-13315:Sample 13

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: Sample 13


E-MTAB-13315:Sample 14

text: School of Biomedical Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13315:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 14

characteristic: title


E-MTAB-13315:Sample 15

text: School of Biomedical Sciences

text: public

text: E-MTAB-13315:Sample 15

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 15


E-MTAB-13315:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Biomedical Sciences

characteristic: INSDC center name

text: public

text: E-MTAB-13315:Sample 16

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 16


E-MTAB-13315:Sample 17

text: School of Biomedical Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13315:Sample 17

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: Sample 17


E-MTAB-13315:Sample 18

text: School of Biomedical Sciences

text: public

text: E-MTAB-13315:Sample 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 18

characteristic: title


E-MTAB-13315:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Biomedical Sciences

characteristic: INSDC center name

text: public

text: E-MTAB-13315:Sample 2

text: ArrayExpress

text: not collected

text: house mouse

text: Abca1 and Abcg1 floxed (fl/fl)

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 2


E-MTAB-13315:Sample 3

text: School of Biomedical Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13315:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

text: Abca1 and Abcg1 floxed (fl/fl)

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 3


E-MTAB-13315:Sample 4

text: School of Biomedical Sciences

text: public

text: E-MTAB-13315:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: Abca1 and Abcg1 floxed (fl/fl)

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: Sample 4


E-MTAB-13315:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Biomedical Sciences

characteristic: INSDC center name

text: public

text: E-MTAB-13315:Sample 5

text: ArrayExpress

text: not collected

text: house mouse

text: Abca1 and Abcg1 floxed (fl/fl)

characteristic: genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 5

characteristic: title


E-MTAB-13315:Sample 6

text: School of Biomedical Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13315:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

text: Abca1 and Abcg1 floxed (fl/fl)

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 6


E-MTAB-13315:Sample 7

text: School of Biomedical Sciences

text: public

text: E-MTAB-13315:Sample 7

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 7


E-MTAB-13315:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Biomedical Sciences

characteristic: INSDC center name

text: public

text: E-MTAB-13315:Sample 8

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: Sample 8


E-MTAB-13315:Sample 9

text: School of Biomedical Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13315:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

characteristic: genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: soleus muscle

text: Mus musculus

text: male

text: Sample 9

characteristic: title


text: EASY

text: Salmonidae

characteristic: Family

text: Coregonus

characteristic: Genus

text: National Bioinformatics Infrastructure Sweden

text: public

text: Visual inspection

text: Salmoniformes

text: Flash frozen

text: Leif Andersson

text: Uppsala University

text: ena-SAMPLE-TAB-30-08-2023-12:29:08:405-21517

text: about 3 hours

characteristic: broker name

text: Leif Andersson

text: Uppsala University

characteristic: collecting institution

characteristic: collection date

text: vendace

characteristic: common name

characteristic: depth

text: Specimen collected as a representative individual for its species in the VR-EBP project for purpose of WGS and genome annotation

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sela�n

characteristic: geographic location (region and locality)

text: Freshwater lake

characteristic: habitat

text: Leif Andersson

text: Uppsala University

text: adult

characteristic: lifestage

text: Coregonus albula

text: brain tissue

characteristic: project name

text: Fishing with net

characteristic: sample collection device or method

text: Coregonus albula

text: Male

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ProtaGene CGT GmbH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ProtaGene CGT GmbH

characteristic: Submitter Id

text: house mouse

text: GT8_Rag1R972Q BMT WT1

text: Italy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

characteristic: title


text: ProtaGene CGT GmbH

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: GT8_Rag1R972Q BMT WT2

characteristic: description

text: Italy

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1R972Q GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1R972Q GT5

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1R972Q GT6

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1R972Q BMT UT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_WT ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT5

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT6

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT7

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT8

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT9

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L BMT WT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L BMT WT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L GT10

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q GT5

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q GT4

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q GT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q BMT WT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1R972Q BMT WT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L BMT UT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L BMT WT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L BMT UT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L BMT WT4

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L BMT WT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L BMT WT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L GT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L GT4

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_Rag1F971L ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1F971L ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_Rag1R972Q ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_WT ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1F971L GT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1R972Q GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1R972Q BMT UT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_thymus_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT10_thymus_Rag1R972Q GT

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1F971L GT9

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1F971L ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_thymus_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_thymus_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_thymus_Rag1F971L GT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_thymus_Rag1R972Q GT6

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_thymus_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_thymus_Rag1R972Q GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_thymus_Rag1F971L BMT UT

text: Italy

text: Mus musculus

text: Mus musculus

text: Thymus


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1F971L GT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1R972Q GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1R972Q BMT UT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_spleen_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT10_spleen_Rag1R972Q GT

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_spleen_Rag1F971L GT1

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_spleen_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1F971L GT9

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1F971L ctrl

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT8_spleen_Rag1R972Q GT6

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_spleen_Rag1F971L GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT9_spleen_Rag1R972Q GT2

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_spleen_Rag1F971L BMT UT

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


text: ProtaGene CGT GmbH

text: public

text: house mouse

text: GT11_spleen_Rag1F971L GT3

text: Italy

text: Mus musculus

text: Mus musculus

text: Spleen


E-MTAB-13316:Sample 1

text: public

text: control siRNA

characteristic: RNA interference

text: E-MTAB-13316:Sample 1

tag: Namespace:Department of General Surgery, The First Affiliated Hospital of Anhui Medical University School of Life Science, Anhui Medical University

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

text: Protocols: Sample Collection Protocol for RNA Sequencing in A549 Cells 1. Cell Plating: A549 human lung adenocarcinoma cells are plated at a density of 2 × 10^5 cells per well in 6-well plates. Cells are cultured in DMEM medium supplemented with 10% foetal bovine serum (FBS) and 1% penicillin/streptomycin. 2. Cell Culture: Cells are incubated for 24 hours at 37°C in a humidified atmosphere containing 5% CO2 to allow for cell attachment and growth. 3. Transfection: Post 24-hour incubation, cells are transfected with either GSE1-targeting siRNA or negative control siRNA using Lipofectamine 2000, following the manufacturer's guidelines. 4. Post-Transfection Incubation: Cells are again incubated for 48 hours under the same culture conditions to allow for gene knockdown. 5. Validation of Knockdown: The efficiency of GSE1 gene knockdown is confirmed via western blotting prior to RNA extraction. 6. RNA Isolation: Post-validation, cells are washed twice with phosphate-buffered saline (PBS) and subjected to total RNA extraction using TRIzol reagent as per the manufacturer's instructions. 7. RNA Quantification: The extracted RNA is then quantified and assessed for purity using a NanoDrop One Microvolume UV-Vis Spectrophotometer. Nucleic Acid (RNA) Extraction Protocol from A549 Cells 1. Cell Washing: After 48 hours of post-transfection incubation, A549 cells in 6-well plates are washed twice with cold phosphate-buffered saline (PBS) to remove any residual media and non-adherent cells. 2. Reagent Preparation: TRIzol reagent (Invitrogen) is brought to room temperature before use. 3. RNA Isolation: Approximately 1 mL of TRIzol reagent is added directly to each well, and cells are lysed by pipetting up and down. The lysate is collected and transferred to a microcentrifuge tube. 4. Phase Separation: The cell lysate is incubated at room temperature for 5 minutes to permit the complete dissociation of nucleoprotein complexes. Then, it is centrifuged with chloroform for phase separation. 5. RNA Precipitation: The aqueous phase containing RNA is transferred to a new tube. RNA is precipitated by adding isopropanol, followed by a brief incubation and centrifugation. 6. RNA Washing: The RNA pellet is washed with 75% ethanol to remove impurities, followed by a centrifugation step. 7. RNA Resuspension: The RNA pellet is air-dried and then resuspended in a suitable volume of RNase-free water. 8. RNA Quantification: The quantity and quality of the extracted RNA are assessed using a NanoDrop One Microvolume UV-Vis Spectrophotometer to ensure adequate yield and purity for downstream applications. RNA Library Construction Protocol for RNA-Seq 1. Quality Control: Prior to library construction, ensure that the isolated RNA has high purity and integrity, usually assessed via NanoDrop and possibly an RNA Integrity Number (RIN). 2. RNA Quantification: Measure 500 ng of high-quality total RNA as the starting material for the library preparation. 3. Kit Preparation: Use the TruSeq RNA Sample Preparation Kit (Illumina) and prepare the reagents as per the manufacturer’s guidelines. 4. RNA Fragmentation: The RNA is first fragmented into smaller pieces, either enzymatically or thermally, depending on the kit's protocol. 5. First-Strand cDNA Synthesis: Use reverse transcriptase to synthesize the first strand of cDNA from the fragmented RNA, using random primers. 6. Second-Strand cDNA Synthesis: A second cDNA strand is synthesized to form a stable double-stranded cDNA fragment. 7. End Repair: The double-stranded cDNA fragments undergo end-repair to create blunt ends, facilitating adapter ligation. 8. Adapter Ligation: Adapters containing the sequences necessary for downstream sequencing are ligated to the repaired cDNA ends. 9. PCR Amplification: The adapter-ligated cDNA is amplified using PCR to produce sufficient material for sequencing. This step also incorporates index sequences that allow for multiplexing. 10. Library Validation: Confirm the quality and size distribution of the prepared library, often using a Bioanalyzer or TapeStation. 11. Library Quantification: Quantify the final library concentration to ensure it meets the requirements for sequencing, typically using qPCR or fluorometric methods like Qubit. 12. Sequencing: Load the validated and quantified library into the Illumina HiSeq 4000 sequencing instrument for downstream high-throughput sequencing.

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-13316:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of General Surgery, The First Affiliated Hospital of Anhui Medical University School of Life Science, Anhui Medical University

characteristic: INSDC center name

text: public

text: GSE1 siRNA

text: E-MTAB-13316:Sample 10

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 10


E-MTAB-13316:Sample 11

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GSE1 siRNA

characteristic: SRA accession

text: E-MTAB-13316:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 11


E-MTAB-13316:Sample 12

text: public

text: GSE1 siRNA

text: E-MTAB-13316:Sample 12

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 12

characteristic: title


E-MTAB-13316:Sample 2

text: public

text: control siRNA

characteristic: RNA interference

text: E-MTAB-13316:Sample 2

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 2


E-MTAB-13316:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: control siRNA

text: E-MTAB-13316:Sample 3

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: Sample 3


E-MTAB-13316:Sample 4

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: control siRNA

characteristic: SRA accession

text: E-MTAB-13316:Sample 4

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 4


E-MTAB-13316:Sample 5

text: public

text: control siRNA

text: E-MTAB-13316:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 5


E-MTAB-13316:Sample 6

text: public

text: control siRNA

characteristic: RNA interference

text: E-MTAB-13316:Sample 6

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 6

characteristic: title


E-MTAB-13316:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: GSE1 siRNA

text: E-MTAB-13316:Sample 7

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 7


E-MTAB-13316:Sample 8

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GSE1 siRNA

text: E-MTAB-13316:Sample 8

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: Sample 8


E-MTAB-13316:Sample 9

text: public

text: GSE1 siRNA

characteristic: SRA accession

text: E-MTAB-13316:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: lung adenocarcinoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 9


text: University clinic Duesseldorf

text: public

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: isolate

characteristic: title