text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K wildtype and Ad5 E1A transformed BRK cell line #2

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leibniz Institute of Virology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Leibniz Institute of Virology

characteristic: Submitter Id

characteristic: collection date

text: Norway rat

characteristic: common name

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K wildtype and Ad5 E1A transformed BRK cell line #3

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: kidney

characteristic: title


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K K101R and Ad5 E1A transformed BRK cell line #1

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: LS_pBRK_HA_ABK101R_p5_S10_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K K101R and Ad5 E1A transformed BRK cell line #2

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: BW_pBRK_HA_ABK101R_p5_S18_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K K101R and Ad5 E1A transformed BRK cell line #3

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: KVS_pBRK_HA_ABK101R_p5_S14_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K NES and Ad5 E1A transformed BRK cell line #1

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K NES and Ad5 E1A transformed BRK cell line #2

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K NES and Ad5 E1A transformed BRK cell line #3

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: KVS_pBRK_HA_ABNES_p5_S15_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K NES/K104R and Ad5 E1A transformed BRK cell line #1

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: LS_pBRK_HA_ABNES_K104R_p5_S12_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K NES/K104R and Ad5 E1A transformed BRK cell line #2

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: BW_pBRK_HA_ABNES_K104R_p5_S20_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K NES/K104R and Ad5 E1A transformed BRK cell line #3

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: KVS_pBRK_HA_ABNES_K104R_p5_S16_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K K104R and Ad5 E1A transformed BRK cell line #1

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: pBRK_RNA_Ad5_HAK104R_1169_p6_S1_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K K104R and Ad5 E1A transformed BRK cell line #2

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: pBRK_RNA_Ad5_HAK104R_1170_1_p9_S2_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad5 E1B-55K K104R and Ad5 E1A transformed BRK cell line #3

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: pBRK_RNA_Ad5_HAK104R_1170_2_p10_S3_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad12 E1B-55K wildtype and Ad5 E1A transformed BRK cell line #4

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: pBRK_RNA_Ad12_HAWT_1161_p6_S13_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad12 E1B-55K wildtype and Ad5 E1A transformed BRK cell line #2

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: pBRK_RNA_Ad12_HAWT_1162_p6_S14_R1_001.fastq.gz


text: Leibniz Institute of Virology

text: public

text: Norway rat

text: Single-read mRNA-seq sample from HA-tagged Ad12 E1B-55K wildtype and Ad5 E1A transformed BRK cell line #3

text: Germany

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: pBRK_RNA_Ad12_HAWT_1163_p6_S15_R1_001.fastq.gz


characteristic: Accession

characteristic: Bioreplicate

characteristic: Genotype

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: not collected

text: thale cress

text: 14 day-old seeedlings grown in long day photoperiod on general growth medium in tissue culture were cross-linked in 1% formaldehyd for 20 minutes. Chromatin was prepared for Chromatin-Immunoprecipitation using polyclonal anti-GFP antibodies (ab290)

text: seedling

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling

text: ChIP control R1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: not collected

text: thale cress

text: seedling

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling

text: ChIP control R2


characteristic: External Id

text: TRB2p-TRB2-YFP Col-0

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: thale cress

text: seedling

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling

text: ChIP TRB2p-TRB2-YFP ChIP R1


text: TRB2p-TRB2-YFP Col-0

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: thale cress

text: seedling

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling

text: ChIP TRB2p-TRB2-YFP ChIP R2


text: TRB3p-TRB3-YFP trb3-2

text: public

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

text: seedling

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling

text: ChIP TRB3p-TRB3-YFP ChIP R1


text: TRB3p-TRB3-YFP trb3-2

text: public

text: not collected

text: thale cress

characteristic: description

text: seedling

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole seedling

text: ChIP TRB3p-TRB3-YFPC hIP R2


characteristic: Accession

characteristic: Bioreplicate

text: public

text: not collected

text: thale cress

text: 12 day-old seedlings grown in long day (16h light 8h dark) photoperiod at 22�C were collected for total RNA preparation at ZT10. Only above ground tissue was collected, 2-3 plants were pooled per sample. Three biologcal replicates were generated from plants sawn at two day intervals and grown in the same growth cabinet. Total RNA was extraction using Qiagen RNeasy Plant Mini Kit.

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq Col-0 12d seedling R1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: Genotype

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq Col-0 12d seedling R2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq Col-0 12d seedling R3


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 12d seedling R1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 12d seedling R2


text: public

text: not collected

text: thale cress

characteristic: common name

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 12d seedling R3


characteristic: Accession

characteristic: Bioreplicate

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb2-3 12d seedling R1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb2-3 12d seedling R2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Genotype

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb2-3 12d seedling R3


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb3-2 12d seedling R1


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb3-2 12d seedling R2


text: public

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

characteristic: description

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb3-2 12d seedling R3


characteristic: Accession

characteristic: Bioreplicate

text: trb1-2 trb2-3

text: public

text: not collected

text: thale cress

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 trb2-3 12d seedling R1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: trb1-2 trb2-3

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seqtrb1-2 trb2-3 12d seedling R2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: trb1-2 trb2-3

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 trb2-3 12d seedling R3

characteristic: title


text: trb1-2 trb3-2

characteristic: Genotype

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 trb3-2 12d seedling R1


text: trb1-2 trb3-2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 trb3-2 12d seedling R2


text: trb1-2 trb3-2

text: public

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb1-2 trb3-2 12d seedling R3


characteristic: Accession

characteristic: Bioreplicate

text: trb2-3 trb3-2

text: public

text: not collected

text: thale cress

characteristic: description

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb2-3 trb3-2 12d seedling R1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: trb2-3 trb3-2

text: public

text: not collected

text: thale cress

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb2-3 trb3-2 12d seedling R2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: trb2-3 trb3-2

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: seedling without roots

text: RNA-seq trb2-3 trb3-2 12d seedling R3


characteristic: Genotype

characteristic: INSDC center name

text: public

text: not collected

text: thale cress

text: 1 fully expanded non-senescent leaf of a 27 day-old plant grown in long day (16h light 8h dark) photoperiod at 22�C was collected for total RNA preparation at ZT10. Three biologcal replicates were generated from plants sawn at two day intervals and grown in the same growth cabinet. Total RNA was extraction using Qiagen RNeasy Plant Mini Kit. Plants showed some insect dammage.

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq Col-0 leaf from 27d old plant R1

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq Col-0 leaf from 27d old plant R2


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq Col-0 leaf from 27d old plant R3


characteristic: Accession

characteristic: Bioreplicate

text: public

text: not collected

text: thale cress

characteristic: common name

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 leaf from 27d old plant R1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: not collected

text: thale cress

characteristic: description

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 leaf from 27d old plant R2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not collected

text: thale cress

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 leaf from 27d old plant R3


characteristic: Genotype

characteristic: INSDC center name

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb2-3 leaf from 27d old plant R1


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb2-3 leaf from 27d old plant R2

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb2-3 leaf from 27d old plant R3


characteristic: Accession

characteristic: Bioreplicate

text: public

text: not collected

characteristic: collection date

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb3-2 leaf from 27d old plant R1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: not collected

text: thale cress

characteristic: common name

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb3-2 leaf from 27d old plant R2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not collected

text: thale cress

characteristic: description

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb3-2 leaf from 27d old plant R3


text: trb1-2 trb2-3

characteristic: Genotype

characteristic: INSDC center name

text: public

text: not collected

text: thale cress

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 trb2-3 leaf from 27d old plant R1


text: trb1-2 trb2-3

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seqtrb1-2 trb2-3 leaf from 27d old plant R2


text: trb1-2 trb2-3

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 trb2-3 leaf from 27d old plant R3

characteristic: title


characteristic: Accession

characteristic: Bioreplicate

text: trb1-2 trb3-2

text: public

characteristic: Submitter Id

text: not collected

text: thale cress

text: 1 fully expanded non-senescent leaf of a 27 day-old plant grown in long day (16h light 8h dark) photoperiod at 22�C was collected for total RNA preparation at ZT10. Three biologcal replicates were generated from plants sawn at two day intervals and grown in the same growth cabinet. Total RNA was extraction using Qiagen RNeasy Plant Mini Kit. Plants showed some insect dammage.

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 trb3-2 leaf from 27d old plant R1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: trb1-2 trb3-2

text: public

text: not collected

characteristic: collection date

text: thale cress

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 trb3-2 leaf from 27d old plant R2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: trb1-2 trb3-2

text: public

text: not collected

text: thale cress

characteristic: common name

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb1-2 trb3-2 leaf from 27d old plant R3


text: trb2-3 trb3-2

characteristic: Genotype

characteristic: INSDC center name

text: public

text: not collected

text: thale cress

characteristic: description

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb2-3 trb3-2 leaf from 27d old plant R1


text: trb2-3 trb3-2

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

text: thale cress

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb2-3 trb3-2 leaf from 27d old plant R2


text: trb2-3 trb3-2

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: thale cress

text: not collected

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: fully expanded non-senescent leaf

text: RNA-seq trb2-3 trb3-2 leaf from 27d old plant R3


E-MTAB-13059:Sample 1

text: Lund University

text: public

text: E-MTAB-13059:Sample 1

tag: Namespace:Lund University

text: 5 to 8

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: thale cress

characteristic: cultivar

text: Protocols: Flowers were collected from mature plants and immediately frozen Plants were grown in soil-filled pots in long day conditions (16h light) at approximately 120 umol s-1 m-2. Mitoribosome footprints were prepared from Arabidopsis flower buds as previously described (Planchard et al., 2018). Ribosome footprints were depleted from ribosomal RNAs after first strand cDNA synthesis using custom biotinylated oligonucleotides matching major rRNA contaminants found in previous experiments (Planchard et al., 2018). N. Planchard, P. Bertin, M. Quadrado, C. Dargel-Graffin, I. Hatin, O. Namy, H. Mireau, The translational landscape of Arabidopsis mitochondria. Nucleic acids research 46, 6218-6228 (2018). Ribo-Seq libraries were prepared using the TruSeq Small RNA library preparation kit (Illumina).

text: whole plant flowering stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 1

characteristic: title


E-MTAB-13059:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: E-MTAB-13059:Sample 2

characteristic: Submitter Id

text: 5 to 8

text: ArrayExpress

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

text: whole plant flowering stage

text: wild type genotype

text: not collected

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-13059:Sample 3

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13059:Sample 3

text: 5 to 8

text: ArrayExpress

text: not collected

text: thale cress

characteristic: description

text: whole plant flowering stage

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower

text: Arabidopsis thaliana

text: Sample 3


E-MTAB-13059:Sample 4

text: Lund University

text: public

text: E-MTAB-13059:Sample 4

text: 5 to 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: thale cress

characteristic: cultivar

text: whole plant flowering stage

characteristic: developmental stage

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: flower

text: Arabidopsis thaliana

text: Sample 4


E-MTAB-13059:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: E-MTAB-13059:Sample 5

characteristic: Submitter Id

text: 5 to 8

text: ArrayExpress

text: not collected

text: thale cress

text: whole plant flowering stage

text: not collected

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 5

characteristic: title


E-MTAB-13059:Sample 6

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13059:Sample 6

text: 5 to 8

text: ArrayExpress

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

text: whole plant flowering stage

text: not collected

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-13060:Sample 1

text: Lund University

text: public

text: E-MTAB-13060:Sample 1

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: thale cress

characteristic: cultivar

text: Protocols: Mitochondria were collected from two-week-old in vitro grown plants in shaking flasks. Plants were grown in soil-filled pots in long day conditions (16h light) at approximately 120 umol s-1 m-2. RNA immunoprecipitation (RIP) assays were performed with the μMACS GFP-Tagged Protein Isolation Kit (Miltenyi Biotec) according to manufacturer’s instructions with minor modifications. Samples were homogenized in RIP lysis buffer (20 mM HEPES-KOH, pH 7.6, 100 mM KCl, 20 mM MgCl2, 1 mM DTT, 1% (v/v) Triton X-100, 1X of complete EDTA-free protease inhibitor (Roche)) for 30 min at 4°C with slow rotation (10 rpm). The lysates were clarified by centrifugation at 100,000 g for 20 min at 4°C and resulting the supernatant was incubated with 50 μL of anti-GFP magnetic beads (Miltenyi Biotec) for 30 min at 4°C with rotation (10 rpm). Following three washes with RIP washing buffer (lysis buffer with 0.1% Triton X-100) and recovery of the beads on a magnetic stand each time, RNAs were extracted from the beads with TRIzol reagent (Life Technologies), precipitated with ethanol, and then used for RT-qPCR analysis. Prior to retrotranscription, immunoprecipitated RNAs were treated with DNase Max (QIAGEN). Ribosome footprints were depleted from ribosomal RNAs after first strand cDNA synthesis using custom biotinylated oligonucleotides matching major rRNA contaminants found in previous experiments (Planchard et al., 2018).N. Planchard, P. Bertin, M. Quadrado, C. Dargel-Graffin, I. Hatin, O. Namy, H. Mireau, The translational landscape of Arabidopsis mitochondria. Nucleic acids research 46, 6218-6228 (2018).

characteristic: description

text: LP.04 four leaves visible stage

characteristic: developmental stage

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

characteristic: stimulus

text: Sample 1


E-MTAB-13060:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: E-MTAB-13060:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: thale cress

text: LP.04 four leaves visible stage

text: not collected

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-13060:Sample 3

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13060:Sample 3

text: ArrayExpress

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

text: LP.04 four leaves visible stage

text: not collected

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

text: Sample 3

characteristic: title


E-MTAB-13060:Sample 4

text: Lund University

text: public

text: E-MTAB-13060:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: thale cress

characteristic: cultivar

characteristic: description

text: LP.04 four leaves visible stage

characteristic: developmental stage

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

characteristic: stimulus

text: Sample 4


E-MTAB-13060:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: E-MTAB-13060:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: thale cress

text: LP.04 four leaves visible stage

text: not collected

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana

text: RNAse-treated

text: Sample 5


E-MTAB-13060:Sample 6

text: Lund University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13060:Sample 6

text: ArrayExpress

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

text: LP.04 four leaves visible stage

text: not collected

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

text: RNAse-treated

text: Sample 6

characteristic: title


E-MTAB-13060:Sample 7

text: Lund University

text: public

text: E-MTAB-13060:Sample 7

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: thale cress

characteristic: cultivar

characteristic: description

text: LP.04 four leaves visible stage

characteristic: developmental stage

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

text: RNAse-treated

characteristic: stimulus

text: Sample 7


E-MTAB-13060:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lund University

text: public

text: E-MTAB-13060:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: thale cress

text: LP.04 four leaves visible stage

text: not collected

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana

text: RNAse-treated

text: Sample 8


characteristic: Accession

characteristic: Bioreplicate

characteristic: Genotype

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

characteristic: collection date

text: thale cress

characteristic: common name

text: 14 day-old seeedlings grown in long day photoperiod on general growth medium in tissue culture were cross-linked in 1% formaldehyd for 20 minutes. Chromatin was prepared for Chromatin-Immunoprecipitation using polyclonal anti-GFP antibodies (ab290)

text: seedling

text: not collected

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling

text: Input Col-0 control

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: TRB2p-TRB2-YFP Col-0

text: public

text: not collected

text: thale cress

characteristic: description

text: seedling

text: not collected

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling

text: Input TRB2p-TRB2-YFP


characteristic: External Id

text: TRB3p-TRB3-YFP trb3-2

text: public

characteristic: Submitter Id

text: not collected

text: thale cress

text: seedling

text: not collected

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole seedling

text: Input TRB3p-TRB3-YFP


text: public

text: ena-SAMPLE-TAB-14-06-2023-17:50:57:439-3645

tag: Namespace:Whitney Laboratory for Marine Bioscience

text: Raw reads collected from PacBio sequencing

text: Atlantic Ocean

text: Beroe ovata

text: Beroe ovata

text: Genomic DNA


E-MTAB-13069:BIN18_1 | 001 | CK

text: public

text: E-MTAB-13069:BIN18_1 | 001 | CK

tag: Namespace:Laboratory of Translational Research, AULS-IIRCCS di Reggio Emilia

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: Protocols: Spatial Transcriptomic was performed using the GeoMx DSP® (Nanostring technologies, Seattle, WA, USA) starting from slides of 5μm FFPE diagnostic biopsies. In order to perform spatial selection, slides were stained with GeoMx Solid Tumor TME Morphology Kit (Nanostring technologies) including antibodies against CytoKeratin (CK), CD45 and SYTO-13 as nuclear stain. On each slide, the pathologist designed regions of interest (ROIs) representative of the tumor and tumor microenvironment. CK+ regions were classified as tumor, CK- regions were classified as tumor microenvironment. Microenvironment regions were further subdivided in CD45+ (immune-compartment) and CD45- (stroma). The slides were hybridized with the GeoMx® Cancer Transcriptome Atlas panel according to manufacturer protocol. After AOIs selection and photo-cleavage GeoMx RNA probes were sequenced Hybridized RNA-probes were collected from each of the selected AOIs, and libraries for NGS sequencing were constructed by GeoMx® Seq Code Pack (Nanostring technologies). Libraries were pooled according to AOIs dimension, purified by AMPure XP beads (Beckman Coulter, Brea, Cali-fornia, USA) clean up and finally resuspended in a volume proportional to the number of pooled AOIs. The quality and quantity of library pools were evaluated by Agilent Bioanalyzer.

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: CK+

characteristic: markers

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: pathological complete response

characteristic: response to treatment

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_1 | 001 | CK


E-MTAB-13069:BIN18_1 | 002 | CK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of Translational Research, AULS-IIRCCS di Reggio Emilia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_1 | 002 | CK

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK+

text: Homo sapiens

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_1 | 002 | CK

characteristic: title


E-MTAB-13069:BIN18_1 | 003 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-13069:BIN18_1 | 003 | CK

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_1 | 003 | CK


E-MTAB-13069:BIN18_1 | 004 | CD45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_1 | 004 | CD45

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK- CD45+

characteristic: markers

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: pathological complete response

characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_1 | 004 | CD45


E-MTAB-13069:BIN18_1 | 005 | CD45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_1 | 005 | CD45

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK- CD45+

text: Homo sapiens

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_1 | 005 | CD45

characteristic: title


E-MTAB-13069:BIN18_1 | 006 | CK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_1 | 006 | CK

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_1 | 006 | CK


E-MTAB-13069:BIN18_1 | 007 | CD45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_1 | 007 | CD45

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK- CD45+

characteristic: markers

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: pathological complete response

characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_1 | 007 | CD45


E-MTAB-13069:BIN18_1 | 008 | CD45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_1 | 008 | CD45

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK- CD45+

text: Homo sapiens

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_1 | 008 | CD45

characteristic: title


E-MTAB-13069:BIN18_2 | 001 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_2 | 001 | CK

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_2 | 001 | CK


E-MTAB-13069:BIN18_2 | 001 | STROMA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_2 | 001 | STROMA

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK- CD45-

characteristic: markers

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: pathological complete response

characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_2 | 001 | STROMA


E-MTAB-13069:BIN18_2 | 002 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_2 | 002 | CK

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK+

text: Homo sapiens

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_2 | 002 | CK

characteristic: title


E-MTAB-13069:BIN18_2 | 002 | STROMA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_2 | 002 | STROMA

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK- CD45-

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_2 | 002 | STROMA


E-MTAB-13069:BIN18_2 | 003 | STROMA

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_2 | 003 | STROMA

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK- CD45-

characteristic: markers

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: pathological complete response

characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_2 | 003 | STROMA


E-MTAB-13069:BIN18_2 | 004 | CK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_2 | 004 | CK

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK+

text: Homo sapiens

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_2 | 004 | CK

characteristic: title


E-MTAB-13069:BIN18_2 | 005 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_2 | 005 | CK

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_2 | 005 | CK


E-MTAB-13069:BIN18_2 | 006 | CD45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_2 | 006 | CD45

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK- CD45+

characteristic: markers

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: pathological complete response

characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_2 | 006 | CD45


E-MTAB-13069:BIN18_2 | 007 | CD45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_2 | 007 | CD45

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK- CD45+

text: Homo sapiens

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_2 | 007 | CD45

characteristic: title


E-MTAB-13069:BIN18_2 | 008 | CD45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_2 | 008 | CD45

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK- CD45+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: pathological complete response

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_2 | 008 | CD45


E-MTAB-13069:BIN18_2 | 009 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_2 | 009 | CK

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK+

characteristic: markers

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: no-responder

characteristic: response to treatment

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_2 | 009 | CK


E-MTAB-13069:BIN18_2 | 010 | CK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_2 | 010 | CK

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK+

text: Homo sapiens

text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_2 | 010 | CK

characteristic: title


E-MTAB-13069:BIN18_2 | 011 | CK

characteristic: ENA-LAST-UPDATE

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text: E-MTAB-13069:BIN18_2 | 011 | CK

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characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_2 | 011 | CK


E-MTAB-13069:BIN18_2 | 012 | CK

characteristic: ENA-CHECKLIST

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text: female

characteristic: sex

text: BIN18_2 | 012 | CK


E-MTAB-13069:BIN18_2 | 013 | CK

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text: E-MTAB-13069:BIN18_2 | 013 | CK

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text: Homo sapiens

text: breast

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text: Homo sapiens

text: female

text: BIN18_2 | 013 | CK

characteristic: title


E-MTAB-13069:BIN18_2 | 014 | CD45

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text: Homo sapiens

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text: BIN18_2 | 014 | CD45


E-MTAB-13069:BIN18_3 | 001 | CK

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text: BIN18_3 | 001 | CK


E-MTAB-13069:BIN18_3 | 001 | STROMA

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text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_3 | 001 | STROMA

characteristic: title


E-MTAB-13069:BIN18_3 | 002 | CK

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text: breast

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text: tumor

text: Homo sapiens

text: female

text: BIN18_3 | 002 | CK


E-MTAB-13069:BIN18_3 | 003 | CK

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characteristic: INSDC center name

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text: BIN18_3 | 003 | CK


E-MTAB-13069:BIN18_3 | 003 | STROMA

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text: tumor microenvironment

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text: female

text: BIN18_3 | 003 | STROMA

characteristic: title


E-MTAB-13069:BIN18_3 | 004 | CD45

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text: tumor microenvironment

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text: BIN18_3 | 004 | CD45


E-MTAB-13069:BIN18_3 | 005 | CD45

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E-MTAB-13069:BIN18_3 | 007 | CD45

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text: Homo sapiens

text: breast

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text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_3 | 007 | CD45

characteristic: title


E-MTAB-13069:BIN18_4 | 002 | CK

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text: Homo sapiens

text: breast

text: pathological complete response

text: tumor

text: Homo sapiens

text: female

text: BIN18_4 | 002 | CK


E-MTAB-13069:BIN18_4 | 003 | CK

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text: BIN18_4 | 003 | CK


E-MTAB-13069:BIN18_4 | 003 | STROMA

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text: pathological complete response

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_4 | 003 | STROMA

characteristic: title


E-MTAB-13069:BIN18_4 | 004 | CK

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text: BIN18_4 | 004 | CK


E-MTAB-13069:BIN18_4 | 005 | CD45

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text: BIN18_4 | 005 | CD45


E-MTAB-13069:BIN18_4 | 006 | CD45

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text: pathological complete response

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_4 | 006 | CD45

characteristic: title


E-MTAB-13069:BIN18_4 | 007 | CK

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text: BIN18_4 | 007 | CK


E-MTAB-13069:BIN18_4 | 007 | STROMA

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text: BIN18_4 | 007 | STROMA


E-MTAB-13069:BIN18_A1 | 004 | CK

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text: female

text: BIN18_A1 | 004 | CK

characteristic: title


E-MTAB-13069:BIN18_A1 | 005 | STROMA

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text: BIN18_A1 | 005 | STROMA


E-MTAB-13069:BIN18_A1 | 15856_001 | CK

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characteristic: sex

text: BIN18_A1 | 15856_001 | CK


E-MTAB-13069:BIN18_A1 | 15856_002 | CK

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text: BIN18_A1 | 15856_002 | CK

characteristic: title


E-MTAB-13069:BIN18_A1 | 15856_003 | CK

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text: BIN18_A1 | 15856_006 | STROMA


E-MTAB-13069:BIN18_B1 | 003 | CD45

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text: tumor microenvironment

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text: BIN18_B1 | 003 | CD45

characteristic: title


E-MTAB-13069:BIN18_B1 | 004 | CD45

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text: BIN18_B1 | 004 | CD45


E-MTAB-13069:BIN18_B1 | 005 | CD45

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text: E-MTAB-13069:BIN18_B1 | 005 | CD45

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characteristic: sex

text: BIN18_B1 | 005 | CD45


E-MTAB-13069:BIN18_B1 | 007 | CD45

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characteristic: SRA accession

text: E-MTAB-13069:BIN18_B1 | 007 | CD45

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text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_B1 | 007 | CD45

characteristic: title


E-MTAB-13069:BIN18_B1 | 009 | CD45

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characteristic: External Id

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text: public

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text: E-MTAB-13069:BIN18_B1 | 009 | CD45

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text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_B1 | 009 | CD45


E-MTAB-13069:BIN18_B1 | 28147_001 | CK

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text: E-MTAB-13069:BIN18_B1 | 28147_001 | CK

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characteristic: sex

text: BIN18_B1 | 28147_001 | CK


E-MTAB-13069:BIN18_B1 | 28147_002 | CK

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characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_B1 | 28147_002 | CK

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text: tumor

text: Homo sapiens

text: female

text: BIN18_B1 | 28147_002 | CK

characteristic: title


E-MTAB-13069:BIN18_C1 | 005 | CD45

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characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_C1 | 005 | CD45

text: ArrayExpress

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text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

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characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK- CD45+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_C1 | 005 | CD45


E-MTAB-13069:BIN18_C1 | 008 | CD45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_C1 | 008 | CD45

text: ArrayExpress

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characteristic: markers

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text: Homo sapiens

text: breast

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text: no-responder

characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_C1 | 008 | CD45


E-MTAB-13069:BIN18_C1 | 011 | CD45

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_C1 | 011 | CD45

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

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text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

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text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_C1 | 011 | CD45

characteristic: title


E-MTAB-13069:BIN18_C1 | 012 | CD45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_C1 | 012 | CD45

text: ArrayExpress

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characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_C1 | 012 | CD45


E-MTAB-13069:BIN18_C1 | 013 | CK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

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text: public

text: E-MTAB-13069:BIN18_C1 | 013 | CK

text: ArrayExpress

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text: tumor

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_C1 | 013 | CK


E-MTAB-13069:BIN18_C1 | 014 | CK

characteristic: ENA-LAST-UPDATE

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text: public

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characteristic: SRA accession

text: E-MTAB-13069:BIN18_C1 | 014 | CK

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text: ArrayExpress

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text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_C1 | 014 | CK

characteristic: title


E-MTAB-13069:BIN18_C1 | 015 | CK

characteristic: ENA-CHECKLIST

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text: public

text: E-MTAB-13069:BIN18_C1 | 015 | CK

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text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_C1 | 015 | CK


E-MTAB-13069:BIN18_C1 | 016 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

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text: E-MTAB-13069:BIN18_C1 | 016 | CK

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text: female

characteristic: sex

text: BIN18_C1 | 016 | CK


characteristic: ENA-CHECKLIST

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text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_C1 | 25753_009 | CD45

characteristic: Submitter Id

text: ArrayExpress

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text: not collected

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text: human

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text: breast

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text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_C1 | 25753_009 | CD45

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: public

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text: E-MTAB-13069:BIN18_C1 | 25753_010 | CD45

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text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_C1 | 25753_010 | CD45


E-MTAB-13069:BIN18_C1 | 39240_001 | CK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

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text: public

text: E-MTAB-13069:BIN18_C1 | 39240_001 | CK

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text: Homo sapiens

text: female

characteristic: sex

text: BIN18_C1 | 39240_001 | CK


E-MTAB-13069:BIN18_C1 | 39240_002 | CK

characteristic: ENA-LAST-UPDATE

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_C1 | 39240_002 | CK

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text: ArrayExpress

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text: human

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text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_C1 | 39240_002 | CK

characteristic: title


E-MTAB-13069:BIN18_C1 | 39240_003 | CK

characteristic: ENA-CHECKLIST

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characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_C1 | 39240_003 | CK


E-MTAB-13069:BIN18_C1 | 39240_004 | CK

characteristic: ENA-LAST-UPDATE

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text: public

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text: E-MTAB-13069:BIN18_C1 | 39240_004 | CK

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text: female

characteristic: sex

text: BIN18_C1 | 39240_004 | CK


characteristic: ENA-CHECKLIST

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text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_C1 | 39240_006 | STROMA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

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text: human

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text: breast

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text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_C1 | 39240_006 | STROMA

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: public

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text: E-MTAB-13069:BIN18_C1 | 39240_007 | STROMA

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characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_C1 | 39240_007 | STROMA


E-MTAB-13069:BIN18_D1_II | 002 | CK

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_D1_II | 002 | CK

text: ArrayExpress

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text: human

text: adult

text: triple-negative breast cancer

text: not collected

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text: Homo sapiens

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text: breast

characteristic: organism part

text: no-responder

characteristic: response to treatment

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: BIN18_D1_II | 002 | CK


E-MTAB-13069:BIN18_D1_II | 003 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_D1_II | 003 | CK

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK+

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text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_D1_II | 003 | CK

characteristic: title


E-MTAB-13069:BIN18_D1_II | 005 | STROMA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

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text: public

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text: triple-negative breast cancer

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text: not collected

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text: not applicable

text: CK- CD45-

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characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_D1_II | 005 | STROMA


E-MTAB-13069:BIN18_D1_II | 007 | CD45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_D1_II | 007 | CD45

text: ArrayExpress

text: not collected

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text: CK- CD45+

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text: Homo sapiens

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text: tumor microenvironment

characteristic: sampling site

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text: female

characteristic: sex

text: BIN18_D1_II | 007 | CD45


E-MTAB-13069:BIN18_D1_II | 008 | CD45

characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_D1_II | 008 | CD45

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK- CD45+

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text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_D1_II | 008 | CD45

characteristic: title


E-MTAB-13069:BIN18_D1_II | 010 | CK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_D1_II | 010 | CK

text: ArrayExpress

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characteristic: organism

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text: breast

text: no-responder

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text: Homo sapiens

text: female

text: BIN18_D1_II | 010 | CK


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_D1_II | 28698_001 | CK

text: ArrayExpress

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text: human

text: adult

text: triple-negative breast cancer

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characteristic: markers

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characteristic: sex

text: BIN18_D1_II | 28698_001 | CK


characteristic: ENA-LAST-UPDATE

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characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_D1_II | 28698_002 | CK

characteristic: Submitter Id

text: ArrayExpress

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text: not collected

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text: human

characteristic: common name

text: adult

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text: not applicable

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text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_D1_II | 28698_002 | CK

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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text: E-MTAB-13069:BIN18_D1_II | 28698_004 | CK

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text: breast

text: no-responder

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text: Homo sapiens

text: female

text: BIN18_D1_II | 28698_004 | CK


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

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text: E-MTAB-13069:BIN18_D1_II | 28698_006 | STROMA

text: ArrayExpress

text: not collected

text: human

text: adult

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text: not applicable

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text: CK- CD45-

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text: breast

characteristic: organism part

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characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

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text: female

characteristic: sex

text: BIN18_D1_II | 28698_006 | STROMA


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13069:BIN18_D1_II | 44143_001 | CK

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

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text: not applicable

text: CK+

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text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_D1_II | 44143_001 | CK

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_D1_II | 44143_003 | CK

text: ArrayExpress

text: not collected

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characteristic: description

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text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

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text: not applicable

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characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor

text: Homo sapiens

text: female

text: BIN18_D1_II | 44143_003 | CK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_D1_II | 44143_005 | STROMA

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK- CD45-

characteristic: markers

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text: Homo sapiens

text: breast

characteristic: organism part

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characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

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text: female

characteristic: sex

text: BIN18_D1_II | 44143_005 | STROMA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13069:BIN18_D1_II | 44143_006 | STROMA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

text: CK- CD45-

text: Homo sapiens

text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_D1_II | 44143_006 | STROMA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13069:BIN18_D1_II | 44143_007 | STROMA

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: CK- CD45-

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: no-responder

text: tumor microenvironment

text: Homo sapiens

text: female

text: BIN18_D1_II | 44143_007 | STROMA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13069:BIN18_D1_II | 44143_008 | STROMA

text: ArrayExpress

text: not collected

text: human

text: adult

text: triple-negative breast cancer

text: not collected

text: not applicable

characteristic: isolate

text: CK- CD45-

characteristic: markers

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text: Homo sapiens

text: breast

characteristic: organism part

text: no-responder

characteristic: response to treatment

text: tumor microenvironment

characteristic: sampling site

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text: female

characteristic: sex

text: BIN18_D1_II | 44143_008 | STROMA