characteristic: ENA-CHECKLIST

text: public

text: metabat.Sval_Ref_station7_May_contigs_bigger1000.bin.99

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPADES

text: coverage and kmer

characteristic: binning parameters

text: metabat

characteristic: binning software

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: MAG from study PRJEB53193

text: shallow marine sediment [ENVO:03000034]

characteristic: environmental medium

text: Svalbard

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sandy sediment

text: shallow marine sediment [ENVO:03000034]

characteristic: local environmental context

text: sediment metagenome

characteristic: metagenomic source

text: uncultured Arenicella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Arenicella sp.

text: Illumina HiSeq 2566

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRAE Pays de la Loire

characteristic: Submitter Id

text: Control

text: Control

characteristic: collection date

text: bean

characteristic: common name

characteristic: description

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: Flavert

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: Multigeneration effects of drought on the microbiota of bean plants

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Control

text: Drought

text: bean

text: Climatic chamber

text: Field soil

text: France

text: Flavert

text: metagenome

characteristic: investigation type

text: plant metagenome

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Control

text: Control

characteristic: collection date

text: bean

characteristic: common name

characteristic: description

text: Climatic chamber

text: Field soil

text: France

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

text: public

text: Control

text: Drought

text: bean

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Drought

text: Control

text: bean

text: Climatic chamber

text: Field soil

text: France

text: Flavert

text: metagenome

characteristic: investigation type

text: plant metagenome

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Drought

text: Drought

characteristic: collection date

text: bean

characteristic: common name

characteristic: description

text: Climatic chamber

text: Field soil

text: France

text: Flavert

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

text: public

text: Drought

text: Control

text: bean

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Drought

text: Drought

text: bean

text: Climatic chamber

text: Field soil

text: France

text: metagenome

characteristic: investigation type

text: plant metagenome

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Control

text: Control

characteristic: collection date

text: bean

characteristic: common name

characteristic: description

text: Climatic chamber

text: Field soil

text: Leaf

text: France

text: Flavert

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

text: public

text: Control

text: Drought

text: bean

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: Flavert

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Control

text: Control

text: bean

text: Climatic chamber

text: Field soil

text: Leaf

text: France

text: metagenome

characteristic: investigation type

text: plant metagenome

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Control

text: Drought

characteristic: collection date

text: bean

characteristic: common name

characteristic: description

text: Climatic chamber

text: Field soil

text: Leaf

text: France

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

text: public

text: Drought

text: Control

text: bean

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: Flavert

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Drought

text: Drought

text: bean

text: Climatic chamber

text: Field soil

text: Leaf

text: France

text: Flavert

text: metagenome

characteristic: investigation type

text: plant metagenome

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Drought

text: Control

characteristic: collection date

text: bean

characteristic: common name

characteristic: description

text: Climatic chamber

text: Field soil

text: Leaf

text: France

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

text: public

text: Drought

text: Drought

text: bean

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Control

text: Control

text: bean

text: Climatic chamber

text: Field soil

text: Stem

text: France

text: Flavert

text: metagenome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Control

text: Drought

characteristic: collection date

text: bean

characteristic: common name

text: Climatic chamber

text: Field soil

text: Stem

text: France

text: Flavert

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

text: public

text: Control

text: Control

text: bean

characteristic: description

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

text: Stem

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Control

text: Drought

text: bean

text: Climatic chamber

text: Field soil

text: Stem

text: France

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Drought

text: Control

text: bean

text: Climatic chamber

text: Field soil

text: Stem

text: France

text: Flavert

text: metagenome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

text: public

text: Drought

text: Drought

characteristic: collection date

text: bean

characteristic: common name

characteristic: description

text: Climatic chamber

characteristic: environment (biome)

text: Field soil

characteristic: environment (feature)

text: Stem

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: Flavert

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Pays de la Loire

characteristic: INSDC center name

text: public

text: Drought

text: Control

text: bean

text: Climatic chamber

text: Field soil

text: Stem

text: France

characteristic: host genotype

text: metagenome

text: plant metagenome

characteristic: organism

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1


text: INRAE Pays de la Loire

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Drought

text: Drought

text: bean

text: Climatic chamber

text: Field soil

text: Stem

text: France

text: metagenome

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: 16S V4 - gyrB gene - ITS1

characteristic: target gene

characteristic: title


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

characteristic: collection date

text: Genomic epidemiology of the 2022-2023 cholera outbreak in Lebanon

characteristic: description

text: Lebanon

text: Vibrio cholerae

text: Vibrio cholerae


text: ROBERT KOCH INSTITUTE

text: public

tag: Namespace:ROBERT KOCH INSTITUTE

text: Genomic data of Salmonella Muenchen associated with an outbreak event

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: stool

text: Salmonella enterica subsp. enterica serovar Muenchen

characteristic: receipt date

text: Muenchen

characteristic: serotype

text: Clinical Salmonella Muenchen


E-MTAB-13289:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

text: public

text: E-MTAB-13289:Sample 1

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: Triplicate cultures of each S. pneumoniae strains were grown in THY broth until an OD595 0.4-0.5, then centrifuged, resuspended in RNAprotect stabilization buffer (Qiagen), centrifuged again before RNA extraction using Mirvana RNA kit (Applied biosystems) according to the manufacturer’s 485 instructions with an additional lysis step using vigoruous shaking of the tubes after addition of 0.1 mm glass beads (MP Biomedicals). For the serum studies, bacteria were grown in THY broth up to OD595 0.4-0.5, washed twice in PBS and resuspended in 500 ul of fresh human sera for 60 minutes NA Triplicate cultures of each S. pneumoniae strains were grown in THY broth until an OD595 0.4-0.5, then centrifuged, resuspended in RNAprotect stabilization buffer (Qiagen), centrifuged again before RNA extraction using Mirvana RNA kit (Applied biosystems) according to the manufacturer’s 485 instructions with an additional lysis step using vigoruous shaking of the tubes after addition of 0.1 mm glass beads (MP Biomedicals). For the serum studies, bacteria were grown in THY broth up to OD595 0.4-0.5, washed twice in PBS and resuspended in 500 ul of fresh pooled human sera collected from healthy volunteers for 60 minutes following the same protocol mentioned above before RNA extraction.After 60 minutes incubation bacteria were centrifuged, resuspended in RNAprotect stabilization buffer (Qiagen), centrifuged again before RNA extraction using Mirvana RNA kit (Applied biosystems) according to the manufacturer’s 485 instructions with an additional lysis step using vigoruous shaking of the tubes after addition of 0.1 mm glass beads (MP Biomedicals) NA RNA for RNAseq were extracted from double mutant strains cultured to an OD600 0.4-0.5 using Mirvana RNA kit (Applied biosystems) with an additional physical lysis step using 0.1 mm glass beads (MP Biomedicals), treated with Turbo DNAse (Applied biosystems), and deleted of ribosomal RNA using Ribo-Zero Magnetic Kit Bacteria (Illumina) before preparation of sequencing libraries Sequencing libraries were prepared using the KAPA RNA HyperPrep kit (Roche Diagnostics) and 8 cycles of amplificationKAPA RNA HyperPrep Kit - Automated Library Prep. The process starts with RNA fragmentation and priming, first strand cDNA synthesis, second strand cDNA synthesis and A-Tailing, adapter ligation, two post-ligation cleanups, and is followed by an off-deck PCR amplification. This module can be completed in approximately 4 hours

text: not collected

text: THY broth

characteristic: growth condition

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

characteristic: organism part

text: Streptococcus pneumoniae

text: Sample 1


E-MTAB-13289:Sample 10

text: UCL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13289:Sample 10

text: ArrayExpress

text: not collected

text: not collected

text: THY broth

text: not applicable

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 10


E-MTAB-13289:Sample 11

text: UCL

text: public

text: E-MTAB-13289:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: THY broth

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 11

characteristic: title


E-MTAB-13289:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL

text: public

text: E-MTAB-13289:Sample 12

text: ArrayExpress

text: not collected

text: not collected

text: human sera

text: not applicable

characteristic: isolate

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 12


E-MTAB-13289:Sample 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

text: public

text: E-MTAB-13289:Sample 13

text: ArrayExpress

characteristic: broker name

text: not collected

text: not collected

text: human sera

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 13


E-MTAB-13289:Sample 14

text: UCL

characteristic: INSDC center name

text: public

text: E-MTAB-13289:Sample 14

text: ArrayExpress

text: not collected

text: not collected

text: human sera

characteristic: growth condition

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

characteristic: organism part

text: Streptococcus pneumoniae

text: Sample 14


E-MTAB-13289:Sample 15

text: UCL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13289:Sample 15

text: ArrayExpress

text: not collected

text: not collected

text: human sera

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 15


E-MTAB-13289:Sample 16

text: UCL

text: public

characteristic: SRA accession

text: E-MTAB-13289:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: not collected

text: human sera

text: not applicable

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 16


E-MTAB-13289:Sample 17

text: UCL

text: public

text: E-MTAB-13289:Sample 17

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: human sera

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 17


E-MTAB-13289:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL

text: public

text: E-MTAB-13289:Sample 18

text: ArrayExpress

text: not collected

text: not collected

text: human sera

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 18

characteristic: title


E-MTAB-13289:Sample 19

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

text: public

text: E-MTAB-13289:Sample 19

text: ArrayExpress

text: not collected

text: not collected

text: human sera

text: not applicable

characteristic: isolate

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 19


E-MTAB-13289:Sample 2

text: UCL

characteristic: INSDC center name

text: public

text: E-MTAB-13289:Sample 2

text: ArrayExpress

characteristic: broker name

text: not collected

text: not collected

text: THY broth

characteristic: growth condition

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 2


E-MTAB-13289:Sample 20

text: UCL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13289:Sample 20

text: ArrayExpress

text: not collected

text: not collected

text: human sera

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

characteristic: organism part

text: Streptococcus pneumoniae

text: Sample 20


E-MTAB-13289:Sample 21

text: UCL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13289:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: not collected

text: human sera

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 21


E-MTAB-13289:Sample 22

text: UCL

text: public

text: E-MTAB-13289:Sample 22

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: not collected

text: human sera

text: not applicable

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 22


E-MTAB-13289:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL

text: public

text: E-MTAB-13289:Sample 23

text: ArrayExpress

text: not collected

text: not collected

characteristic: geographic location (country and/or sea)

text: human sera

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 23


E-MTAB-13289:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

text: public

text: E-MTAB-13289:Sample 3

text: ArrayExpress

text: not collected

text: not collected

text: THY broth

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 3

characteristic: title


E-MTAB-13289:Sample 4

text: UCL

characteristic: INSDC center name

text: public

text: E-MTAB-13289:Sample 4

text: ArrayExpress

characteristic: broker name

text: not collected

text: not collected

text: THY broth

text: not applicable

characteristic: isolate

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 4


E-MTAB-13289:Sample 5

text: UCL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13289:Sample 5

text: ArrayExpress

text: not collected

text: not collected

text: THY broth

characteristic: growth condition

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 5


E-MTAB-13289:Sample 6

text: UCL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13289:Sample 6

text: ArrayExpress

text: not collected

text: not collected

text: THY broth

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

characteristic: organism part

text: Streptococcus pneumoniae

text: Sample 6


E-MTAB-13289:Sample 7

text: UCL

text: public

text: E-MTAB-13289:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: not collected

text: THY broth

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 7


E-MTAB-13289:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL

text: public

text: E-MTAB-13289:Sample 8

text: ArrayExpress

text: not collected

text: not collected

text: THY broth

text: not applicable

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 8


E-MTAB-13289:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

text: public

text: E-MTAB-13289:Sample 9

text: ArrayExpress

text: not collected

text: not collected

characteristic: geographic location (country and/or sea)

text: THY broth

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae

text: Sample 9


text: University of Cincinnati

characteristic: INSDC center name

text: public

tag: Namespace:University of Cincinnati

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

characteristic: common name

text: Protocols: One mL aliquots of archival serum (n = 6), plasma (n = 2), and urine (n = 3 with a pair of duplicates) from patients with genitourinary malignancies (bladder, kidney and prostate cancers), were obtained from the University of Cincinnati Biorepository. Basic demographic and clinical characteristics were provided for each patient. Exosomes were simultaneously extracted from various biofluids for downstream analysis via flow cytometry and miRNA-seq using the iDEP device. Total RNA extraction from exosomes was performed using the miRNeasy Micro kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol. miRNA library preparation and sequencing was performed by the Genomics, Epigenomics and Sequencing Core at the University of Cincinnati College of Medicine. Library preparation was performed using the NEBNext Multiplex Small RNA Library Prep kit (New England BioLabs, Ipswich, MA) as per the manufacturer’s protocol with modification for precise miRNA library size selection to increase small RNA detection sensitivity and specificity. After 15 cycles of PCR for indexing and library enrichment, an equal volume of 10 μL PCR mix was pulled from each library, followed by column clean up. Pooled samples were mixed with 135 bp and 146 bp custom-designed DNA ladder corresponding to miRNA library with 16-27 nt. Precise size selection of 135-146 library was performed using agarose gel electrophoresis and quantified by NEB Next Library Quant kit (NEB) using Quant Studio 5 real-time PCR system (Thermo Fisher, Waltham, MA). An initial round of sequencing was performed to quantify the relative concentration of each library by generating a few million reads using a NextSeq550 sequencer (Illumina, San Diego, CA).

text: adult

characteristic: developmental stage

text: prostate cancer

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: urine

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


text: University of Cincinnati

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: prostate cancer

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood serum

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cincinnati

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

text: prostate cancer

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male


text: University of Cincinnati

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: kidney cancer

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male


text: University of Cincinnati

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: kidney cancer

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood serum

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cincinnati

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

text: adult

text: urinary bladder cancer

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood serum

characteristic: organism part

text: Homo sapiens

text: female


text: University of Cincinnati

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: kidney cancer

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood serum

text: Homo sapiens

text: female


E-MTAB-13293:Sample 1

text: KIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13293:Sample 1

characteristic: Submitter Id

text: ArrayExpress

text: hematopoietic stem cell

text: not collected

text: house mouse

text: Protocols: Briefly, livers were crushed and filtered in phosphate buffered saline (PBS) supplemented with 10% fetal calf serum (FCS, Sigma-Aldrich; Darmstadt, Germany) and 2 mM EDTA (Sigma- Aldrich). Antibody staining was performed in the same media for 15-20 minutes at 4°C, after pre-incubation with purified CD16/CD32 antibody to block Fc receptors. Single ED19.5/PD0 liver CD45.2+Lineage-(Ter119, Gr1, B220, CD8a, CD5)Sca1+Kit+(LSK)CD150+CD48- pnHSCs were index-sorted with 100 μm nozzle into 384-well plates loaded with lysis buffer and silicone oil overlays using a FACSAria Fusion cell sorter (BD Biosciences; Franklin Lakes, New Jersey, USA) with an automated cell deposition unit. No extraction was performed. Libraries were constructed using the Smart-seq3xpress protocol.

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: immunophenotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Sample 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ED

text: public

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

text: Protocols: Samples were lysed on plate using RNeasy kit (Qiagen) Lysis buffer. RNA was extracted using RNeasy kit (Qiagen) using manufacturer protocol. DNA was removed in column treatment and in-solution with DNAse I. Individual libraries were generated from 500ng of each total RNA sample using the QuantSeq 3’ mRNA-Seq Library Prep Kit (FWD) for Illumina (Lexogen Inc, #015). Libraries were prepared according to the QuantSeq 3’ mRNA-seq Library Prep Kit (FWD) protocol. The QuantSeq protocol generates only one fragment per transcript, resulting in extremely accurate gene expression values, and the sequences obtained are close to the 3’ end of the transcripts. Library generation was initiated by oligo-dT priming. The primer already contains Illumina-compatible linker sequences. After first strand synthesis, the RNA was removed and second strand synthesis initiated by random priming and a DNA polymerase. With the QuantSeq FWD kit the Read 1 linker sequence is contained in the second strand synthesis primer so NGS reads are generated towards the poly (A) tail and directly correspond to the mRNA sequence. Second strand synthesis was followed by a magnetic bead-based purification step before cDNA libraries were amplified for 13 cycles introducing the sequences required for cluster generation and index sequences to allow multiplexing of sequencing libraries. After amplification a final bead-purification removed any excess primers or adapterdimers that may interfere with sequencing.

text: embryo

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: kidney

text: wild type

characteristic: phenotype

text: Homo sapiens

characteristic: title


text: ED

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

characteristic: common name

characteristic: description

text: embryo

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Di Peptide Repeats expression

text: Homo sapiens


text: University of Nottingham

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Nottingham

text: three-spined stickleback

text: Canada

text: Gasterosteus aculeatus

characteristic: organism

text: Gasterosteus aculeatus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SRUC

text: public

characteristic: Submitter Id

text: digestive tract environment

characteristic: broad-scale environmental context

text: pig

text: Rectum faecal sample of growing pigs

text: rectal swap

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestine environment

characteristic: local environmental context

text: Sus scrofa

characteristic: project name

text: Sus scrofa

text: pig faeces sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SRUC

characteristic: INSDC center name

text: public

text: digestive tract environment

characteristic: collection date

text: pig

characteristic: common name

text: Caecal contents of growing pigs

characteristic: description

text: intestine environment

text: United Kingdom

text: intestine environment

text: Sus scrofa

text: Sus scrofa

text: pig caecum sample

characteristic: title


characteristic: ENA-CHECKLIST

text: SRUC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: digestive tract environment

text: pig

text: Colonic contents of growing pigs

text: intestine environment

text: United Kingdom

text: intestine environment

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: pig colon sample


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Bielefeld University, Center for Biotechnology (CeBiTec), Universitätsstraße 27,  33615, Bielefeld, Germany Bielefeld University, Medical Faculty OWL Universitätsstraße 27,  33615, Bielefeld, Germany

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: Cells were cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 13 mM itaconic acid stress. Bacteria were harvested fast centrifugation. The pellets were immediately frozen in liquid nitrogen and stored at -80°C. S. aureus COL was cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 S. aureus COL was cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 without any treatment Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 ribolyzer followed by RNA isolation using the acid phenol extraction protocol. The RNA quality was approved by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was applied to prepare the cDNA libraries.

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

characteristic: organism part

text: Staphylococcus aureus

text: COL

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bielefeld University, Center for Biotechnology (CeBiTec), Universitätsstraße 27,  33615, Bielefeld, Germany Bielefeld University, Medical Faculty OWL Universitätsstraße 27,  33615, Bielefeld, Germany

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: wild type genotype

text: not collected

text: not applicable

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

text: Staphylococcus aureus

text: COL


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: not collected

text: Protocols: Cells were cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 13 mM itaconic acid stress. Bacteria were harvested fast centrifugation. The pellets were immediately frozen in liquid nitrogen and stored at -80°C. S. aureus COL was cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 S. aureus COL was cultivated in RPMI medium in 3 biological replicates and was exposed/treated 30 min with 13 mM itaconic acid stress at an OD500 of 0.5 Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 ribolyzer followed by RNA isolation using the acid phenol extraction protocol. The RNA quality was approved by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was applied to prepare the cDNA libraries.

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

text: Staphylococcus aureus

text: COL

characteristic: title


text: Augusta University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Augusta University

text: ArrayExpress

text: not collected

text: house mouse

characteristic: common name

text: Protocols: Freshly harvested tumors from C57BL/6 mice were pooled separately into 4 treatment groups to maximize the isolation of tumor infiltrating cells. Tumors were gently dissociated using the gentleMACS Octo Dissociatorwith Heaters (Miltenyi Biotech). Single-cell suspensions of tumor cells were purified by incubation with CD45 Microbeads (Miltenyi Biotec, cat. no. 130-110-618) as per the manufacturer’s instructions to enrich the tumor-infiltrating cells. Quality and quantity of cells were assessed under the microscope by trypan blue staining, and dead cells were removed using the Dead Cell Removal Kit (STEMCELL, cat. no. 17899) as per the manufacturer’s instructions. Nuclei acid extraction was performed following the manufacturer's instructions (10x Genomics, as part of the Chromium Single Cell 3' v3.1). To capture approximately 7,000 targeted cells, 7,000-8,000 live cells were loaded onto the Chromium Controller (10x Genomics), and scRNA-seq libraries were generated using ChromiumNext GEM Single Cell 3’ Reagent kit v3.1 (10x Genomics) according to the manufacturer’s protocol.

text: melanoma

characteristic: disease

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: tumor

characteristic: sampling site

text: Mus musculus


E-MTAB-13300:TREM1 Inhibitor

characteristic: ENA-FIRST-PUBLIC

text: Augusta University

text: public

text: E-MTAB-13300:TREM1 Inhibitor

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: melanoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: tumor

text: Mus musculus

text: TREM1 Inhibitor


name: E-MTAB-13300:TREM1 Inhibitor + ANti-PD-1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Augusta University

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: melanoma

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: tumor

text: Mus musculus

characteristic: strain

text: TREM1 Inhibitor + ANti-PD-1


characteristic: ENA-CHECKLIST

text: Augusta University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: not collected

text: house mouse

characteristic: description

text: melanoma

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: tumor

text: Mus musculus

text: Vehicle

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Hirszfeld Institute of Immunology and Experimental Therapy

text: Poland

text: Teseptimavirus T7

characteristic: organism

text: Teseptimavirus T7


characteristic: ENA-FIRST-PUBLIC

text: Hirszfeld Institute of Immunology and Experimental Therapy

text: public

characteristic: Submitter Id

text: Poland

text: Teseptimavirus T7

text: Teseptimavirus T7


text: Research Centre for the Humanities

text: public

tag: Namespace:Research Centre for the Humanities

text: human

characteristic: common name

text: ancient DNA

text: Hungary

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: Shanghai Tenth People's Hospital

text: public

tag: Namespace:Shanghai Tenth People's Hospital

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: Cells were grown in YPD broth at 30˚C from OD600=0.01 till OD600=1.0. Pellets of 5ml cell culture were obtained by centrifuging at maximum speed for 1min. the pellets were fast frozen in liquid nitrogen. RNA was extracted using the TRIzol method following the manufacturer's protocol. Cell pellets were transferred from liquid nitrogen into the 2ml tub containing 1.5ml Trizol reagent. The mix was shared for 3min, and kept for 5in at room temperature, then centrifuged at 10,000xg for 5min at 4˚C. The supernatant was added 200µl of chloroform/isoamyl alcohol (24:1) with 1ml lysis reagents. After centrifuged at 10,000g for 10min at 4˚C, the supernatant was transferred into another new tube with equal volume of isopropanol and put in the refrigerator at -20˚C for 1h. After centrifuged at 13600xg for 20min at 4˚C, the supernatant was precipitated by 1ml of 75% ethanol and let dry for 3-5min. The RNA pellet was dissolved with 30-100µl of DEPC water. The concentration of the extracted RNA was determined using a Nanodrop system (NanoDrop, Madison, USA), and the integrity of the RNA was examined by the RNA integrity number (RIN) using an Agilent 2100 bioanalyzer (Agilent, Santa Clara, USA) buffer at appropriate temperature. Then First-strand cDNA was generated using random hexamer-primed reverse transcription, followed by a second-strand cDNA synthesis. afterwards, A-Tailing Mix and RNA Index Adapters were added by incubating to end repair. The cDNA fragments obtained from previous step were amplified by PCR, and products were purified by Ampure XP Beads, then dissolved in EB solution. The product was validated on the Agilent Technologies 2100 bioanalyzer for quality control. The double stranded PCR products from previous step were heated denatured and circularized by the splint oligo sequence to get the final library. The single strand circle DNA (ssCir DNA) was formatted as the final library.

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Candida auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Shanghai Tenth People's Hospital

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: not collected

text: not applicable

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Denmark

text: not provided

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TerraPalaeoconsulting

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: peat metagenome

characteristic: organism

text: peat metagenome


text: Uliege

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: cassava

characteristic: common name

characteristic: cultivar

text: 60444 genotype

text: Belgium

text: Manihot esculenta

text: Manihot esculenta


text: Uliege

text: public

text: cassava

text: TME3 genotype

text: Belgium

text: Manihot esculenta

text: Manihot esculenta

characteristic: title


characteristic: ENA-CHECKLIST

text: YANGZHOU UNIVERSITY

text: public

tag: Namespace:YANGZHOU UNIVERSITY

text: ST34 Salmonella enterica subsp. enterica serovar Typhimurium from different sources in China

text: China

text: not provided

characteristic: host health state

text: pig

characteristic: host scientific name

characteristic: isolate

text: pig

text: I 4,[5],12:i:-

characteristic: serovar

text: Salmonella enterica subsp. enterica serovar Typhimurium in China


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YANGZHOU UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: not provided

text: pig

text: pig

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: I 4,[5],12:i:-


text: YANGZHOU UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: description

text: China

characteristic: geographic location (country and/or sea)

text: not provided

text: pig

text: pig

characteristic: organism

text: Typhimurium


text: YANGZHOU UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: China

text: not provided

text: human

text: human

text: I 4,[5],12:i:-


characteristic: ENA-CHECKLIST

text: YANGZHOU UNIVERSITY

text: public

text: China

text: not provided

characteristic: host health state

text: pork

text: pork

text: Typhimurium

characteristic: title


text: YANGZHOU UNIVERSITY

text: public

text: China

text: not provided

text: pork

characteristic: host scientific name

characteristic: isolate

text: pork

text: I 4,[5],12:i:-

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YANGZHOU UNIVERSITY

text: public

text: China

text: not provided

text: human

text: human

text: Typhimurium


characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:Center for Biotechnology (CeBiTec), Bielefeld University

characteristic: Submitter Id

text: Long reads of M. polymorpha subsp. Ruderalis ecotype BoGa

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: grown on Gamborg B5 media on a petri dish at room temperature with a 16h/8h day-night cycle

characteristic: isolation and growth condition

text: Marchantia polymorpha subsp. ruderalis

text: liverwort

characteristic: organism common name

text: mature

characteristic: plant developmental stage

text: Gamborg B5

characteristic: plant growth medium

text: male

characteristic: plant sex

characteristic: plant structure

text: healthy

characteristic: sample health state

text: 42 days

characteristic: sampled age

text: Marchantia polymorpha subsp. ruderalis

text: BoGa

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: BoGa ONT reads


E-MTAB-13306:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 1

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: DNA samples were received from the Princess Margaret cancer center, University Health Network (UHN), Canada) (under UHN IRB protocol 01-0573). Per reaction a total DNA of 50–500 ng/ul was used. DNA samples were received from the Princess Margaret cancer center, University Health Network (UHN), Canada) (under UHN IRB protocol 01-0573).Per reaction a total DNA of 50–500 ng/ul was used. One microliter DNA template was added to a hybridization mix together with a MIP pool (final concentration of 0.04 pM per probe) in 0.85× Ampligase buffer. Mix was incubated in a thermal cycler at 98°C for 3 min, followed by 85°C for 30 min, 60°C for 60 min and 56°C for 60 min. Product was mixed with (final concentration in brackets): dNTPs (14 pM), Betaine (375 mM), NAD+ (1 mM), additional Ampligase buffer (0.5×), Ampligase (total of 1.25U) and Q5 High-Fidelity DNA Polymerase (0.4 U, New England Biolabs). All the product of the hybridization was incubated at 56°C for 5 min followed by 72°C for 5 min. Enzymatic digestion of linear probes was performed by adding Exonuclease I (8U) and Exonuclease III (50 U). Mixture was incubated at 37°C for 10 min, followed by 80°C for 20 min. Final product was amplified using NEBNext Ultra II Q5 Master Mix (New England Biolabs). Samples were pooled and concentrated using AMPure XP beads at 0.75× volumetric concentration and sequenced as abovementioned described.

characteristic: description

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-13306:Sample 10

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 10


E-MTAB-13306:Sample 100

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WIS

text: public

text: E-MTAB-13306:Sample 100

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 100


E-MTAB-13306:Sample 101

characteristic: External Id

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 101

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 101


E-MTAB-13306:Sample 102

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 102

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 102


E-MTAB-13306:Sample 103

text: WIS

text: public

text: E-MTAB-13306:Sample 103

text: ArrayExpress

text: not collected

text: human

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 103


E-MTAB-13306:Sample 104

text: WIS

text: public

text: E-MTAB-13306:Sample 104

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 104


E-MTAB-13306:Sample 105

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 105

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 105

characteristic: title


E-MTAB-13306:Sample 106

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 106

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 106


E-MTAB-13306:Sample 107

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

characteristic: INSDC first public

text: public

text: E-MTAB-13306:Sample 107

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 107


E-MTAB-13306:Sample 108

text: WIS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 108

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 108


E-MTAB-13306:Sample 109

text: WIS

text: public

text: E-MTAB-13306:Sample 109

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 109


E-MTAB-13306:Sample 11

text: WIS

text: public

text: E-MTAB-13306:Sample 11

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 11


E-MTAB-13306:Sample 110

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 110

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 110


E-MTAB-13306:Sample 111

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 111

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 111

characteristic: title


E-MTAB-13306:Sample 112

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 112

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 112


E-MTAB-13306:Sample 113

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 113

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 113


E-MTAB-13306:Sample 114

text: WIS

text: public

text: E-MTAB-13306:Sample 114

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 114


E-MTAB-13306:Sample 115

text: WIS

text: public

text: E-MTAB-13306:Sample 115

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 115


E-MTAB-13306:Sample 116

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 116

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 116


E-MTAB-13306:Sample 117

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 117

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 117


E-MTAB-13306:Sample 118

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 118

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 118

characteristic: title


E-MTAB-13306:Sample 119

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 119

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 119


E-MTAB-13306:Sample 12

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 12

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12


E-MTAB-13306:Sample 120

text: WIS

text: public

text: E-MTAB-13306:Sample 120

text: ArrayExpress

text: not collected

text: human

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 120


E-MTAB-13306:Sample 121

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 121

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 121


E-MTAB-13306:Sample 122

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 122

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 122


E-MTAB-13306:Sample 123

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 123

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 123


E-MTAB-13306:Sample 124

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 124

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 124

characteristic: title


E-MTAB-13306:Sample 125

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 125

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 125


E-MTAB-13306:Sample 126

text: WIS

text: public

text: E-MTAB-13306:Sample 126

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 126


E-MTAB-13306:Sample 127

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 127

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 127


E-MTAB-13306:Sample 128

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 128

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 128


E-MTAB-13306:Sample 129

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 129

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 129


E-MTAB-13306:Sample 13

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 13

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 13


E-MTAB-13306:Sample 130

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 130

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 130

characteristic: title


E-MTAB-13306:Sample 131

text: WIS

text: public

text: E-MTAB-13306:Sample 131

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 131


E-MTAB-13306:Sample 132

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 132

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 132


E-MTAB-13306:Sample 133

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 133

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 133


E-MTAB-13306:Sample 134

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 134

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 134


E-MTAB-13306:Sample 135

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 135

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 135


E-MTAB-13306:Sample 136

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 136

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 136


E-MTAB-13306:Sample 137

text: WIS

text: public

text: E-MTAB-13306:Sample 137

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 137

characteristic: title


E-MTAB-13306:Sample 138

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 138

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 138


E-MTAB-13306:Sample 139

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 139

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 139


E-MTAB-13306:Sample 14

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 14

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 14


E-MTAB-13306:Sample 140

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 140

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 140


E-MTAB-13306:Sample 141

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 141

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 141


E-MTAB-13306:Sample 142

text: WIS

text: public

text: E-MTAB-13306:Sample 142

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 142


E-MTAB-13306:Sample 143

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 143

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 143

characteristic: title


E-MTAB-13306:Sample 144

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 144

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 144


E-MTAB-13306:Sample 145

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 145

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 145


E-MTAB-13306:Sample 146

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 146

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 146


E-MTAB-13306:Sample 147

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 147

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 147


E-MTAB-13306:Sample 148

text: WIS

text: public

text: E-MTAB-13306:Sample 148

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 148


E-MTAB-13306:Sample 149

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 149

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 149


E-MTAB-13306:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 15

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 15

characteristic: title


E-MTAB-13306:Sample 150

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 150

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 150


E-MTAB-13306:Sample 151

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 151

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 151


E-MTAB-13306:Sample 152

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 152

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 152


E-MTAB-13306:Sample 153

text: WIS

text: public

text: E-MTAB-13306:Sample 153

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 153


E-MTAB-13306:Sample 154

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 154

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 154


E-MTAB-13306:Sample 155

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 155

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 155


E-MTAB-13306:Sample 156

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 156

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 156

characteristic: title


E-MTAB-13306:Sample 157

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 157

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 157


E-MTAB-13306:Sample 158

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 158

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 158


E-MTAB-13306:Sample 159

text: WIS

text: public

text: E-MTAB-13306:Sample 159

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 159


E-MTAB-13306:Sample 16

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 16

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 16


E-MTAB-13306:Sample 160

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 160

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 160


E-MTAB-13306:Sample 161

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 161

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 161


E-MTAB-13306:Sample 162

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 162

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 162

characteristic: title


E-MTAB-13306:Sample 163

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 163

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 163


E-MTAB-13306:Sample 164

text: WIS

text: public

text: E-MTAB-13306:Sample 164

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 164


E-MTAB-13306:Sample 165

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 165

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 165


E-MTAB-13306:Sample 166

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 166

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 166


E-MTAB-13306:Sample 167

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 167

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 167


E-MTAB-13306:Sample 168

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 168

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 168


E-MTAB-13306:Sample 169

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 169

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 169

characteristic: title


E-MTAB-13306:Sample 17

text: WIS

text: public

text: E-MTAB-13306:Sample 17

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 17


E-MTAB-13306:Sample 170

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 170

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 170


E-MTAB-13306:Sample 171

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 171

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 171


E-MTAB-13306:Sample 172

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 172

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 172


E-MTAB-13306:Sample 173

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 173

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 173


E-MTAB-13306:Sample 174

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 174

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 174


E-MTAB-13306:Sample 175

text: WIS

text: public

text: E-MTAB-13306:Sample 175

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 175

characteristic: title


E-MTAB-13306:Sample 176

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 176

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 176


E-MTAB-13306:Sample 177

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 177

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 177


E-MTAB-13306:Sample 178

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 178

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 178


E-MTAB-13306:Sample 179

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 179

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 179


E-MTAB-13306:Sample 18

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 18


E-MTAB-13306:Sample 180

text: WIS

text: public

text: E-MTAB-13306:Sample 180

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 180


E-MTAB-13306:Sample 181

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 181

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 181

characteristic: title


E-MTAB-13306:Sample 182

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 182

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 182


E-MTAB-13306:Sample 183

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 183

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 183


E-MTAB-13306:Sample 184

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 184

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 184


E-MTAB-13306:Sample 185

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 185

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 185


E-MTAB-13306:Sample 186

text: WIS

text: public

text: E-MTAB-13306:Sample 186

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 186


E-MTAB-13306:Sample 187

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 187

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 187


E-MTAB-13306:Sample 188

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 188

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 188

characteristic: title


E-MTAB-13306:Sample 189

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 189

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 189


E-MTAB-13306:Sample 19

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 19

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 19


E-MTAB-13306:Sample 190

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 190

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 190


E-MTAB-13306:Sample 191

text: WIS

text: public

text: E-MTAB-13306:Sample 191

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 191


E-MTAB-13306:Sample 192

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 192

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 192


E-MTAB-13306:Sample 193

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 193

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 193


E-MTAB-13306:Sample 194

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 194

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 194

characteristic: title


E-MTAB-13306:Sample 195

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 195

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 195


E-MTAB-13306:Sample 196

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 196

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 196


E-MTAB-13306:Sample 197

text: WIS

text: public

text: E-MTAB-13306:Sample 197

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 197


E-MTAB-13306:Sample 198

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 198

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 198


E-MTAB-13306:Sample 199

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 199

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 199


E-MTAB-13306:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 2

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-13306:Sample 20

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 20

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 20

characteristic: title


E-MTAB-13306:Sample 200

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 200

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 200


E-MTAB-13306:Sample 201

text: WIS

text: public

text: E-MTAB-13306:Sample 201

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: description

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 201


E-MTAB-13306:Sample 202

text: WIS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13306:Sample 202

text: ArrayExpress

text: not collected

text: human

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 202


E-MTAB-13306:Sample 203

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

text: E-MTAB-13306:Sample 203

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 203


E-MTAB-13306:Sample 204

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-13306:Sample 204

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 204


E-MTAB-13306:Sample 205

text: WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13306:Sample 205

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 205


E-MTAB-13306:Sample 206

text: WIS

text: public

characteristic: INSDC status

text: E-MTAB-13306:Sample 206

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 206

characteristic: title


E-MTAB-13306:Sample 207

text: WIS

text: public

text: E-MTAB-13306:Sample 207

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 207