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text: Europe/Germany/Saxony

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10013-CVDP-6CA68A5E-5690-4E37-93EE-6A6A2536889C

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Saxony

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


E-MTAB-13086:spms Mock rep1

text: Universitat de Barcelona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13086:spms Mock rep1

tag: Namespace:Universitat de Barcelona

unit: week

characteristic: age

text: ArrayExpress

text: not collected

text: thale cress

characteristic: common name

characteristic: cultivar

text: Protocols: Leaf infiltration was conducted on 5-week-old Arabidopsis plants using a 1-ml needleless syringe. The infiltration was performed on fully expanded rosette leaves. Leaves at the same developmental stage were chosen for infiltration. At 24 h post-inoculation, only the infiltrated leaves were collected Seeds of the different genotypes were sown on a soil mixture containing peat moss (40%), vermiculite (50%) and perlite (10%), and stratified in the dark at 4°C for 2-3 days. Plants were grown at 20–22℃ under 12-hour light/ 12-hour dark photoperiod cycles. Pst DC3000 (OD600 =0.001) and mock (10 mM MgCl2) inoculation treatments were performed in three biological replicates using three different plants per genotype and treatment. Total RNA was extracted using TriZol (Thermo Fisher) and further purified using RNeasy kit (Qiagen) according to manufacturer's instructions. Libraries were prepared using the MGIEasy RNA Library Prep kit (MGI Tech) according to manufacturer’s instructions

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: spms mutant

characteristic: genotype

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: spms Mock rep1


E-MTAB-13086:spms Mock rep2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universitat de Barcelona

text: public

text: E-MTAB-13086:spms Mock rep2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: thale cress

text: sporophyte vegetative stage

text: spms mutant

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: spms Mock rep2


E-MTAB-13086:spms Mock rep3

text: Universitat de Barcelona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13086:spms Mock rep3

characteristic: age

text: ArrayExpress

text: not collected

text: thale cress

text: sporophyte vegetative stage

text: spms mutant

text: not collected

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: spms Mock rep3

characteristic: title


E-MTAB-13086:wt Mock rep1

text: Universitat de Barcelona

text: public

text: E-MTAB-13086:wt Mock rep1

text: ArrayExpress

text: not collected

text: thale cress

characteristic: common name

characteristic: cultivar

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: wt Mock rep1


E-MTAB-13086:wt Mock rep2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universitat de Barcelona

text: public

text: E-MTAB-13086:wt Mock rep2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: thale cress

text: sporophyte vegetative stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: wt Mock rep2


E-MTAB-13086:wt Mock rep3

text: Universitat de Barcelona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13086:wt Mock rep3

characteristic: age

text: ArrayExpress

text: not collected

text: thale cress

text: sporophyte vegetative stage

text: wild type genotype

text: not collected

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: wt Mock rep3

characteristic: title


E-MTAB-13086:spms Pst DC3000 rep1

text: Universitat de Barcelona

text: public

text: E-MTAB-13086:spms Pst DC3000 rep1

text: ArrayExpress

text: not collected

text: thale cress

characteristic: common name

characteristic: cultivar

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: spms mutant

characteristic: genotype

text: not collected

text: Pseudomonas syringae pv. tomato DC3000

characteristic: infect

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: spms Pst DC3000 rep1


E-MTAB-13086:spms Pst DC3000 rep2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universitat de Barcelona

text: public

text: E-MTAB-13086:spms Pst DC3000 rep2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: thale cress

text: sporophyte vegetative stage

text: spms mutant

text: not collected

characteristic: geographic location (country and/or sea)

text: Pseudomonas syringae pv. tomato DC3000

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: spms Pst DC3000 rep2


E-MTAB-13086:spms Pst DC3000 rep3

text: Universitat de Barcelona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13086:spms Pst DC3000 rep3

characteristic: age

text: ArrayExpress

text: not collected

text: thale cress

text: sporophyte vegetative stage

text: spms mutant

text: not collected

text: Pseudomonas syringae pv. tomato DC3000

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: spms Pst DC3000 rep3

characteristic: title


E-MTAB-13086:wt Pst DC3000 rep1

text: Universitat de Barcelona

text: public

text: E-MTAB-13086:wt Pst DC3000 rep1

text: ArrayExpress

text: not collected

text: thale cress

characteristic: common name

characteristic: cultivar

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: Pseudomonas syringae pv. tomato DC3000

characteristic: infect

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: wt Pst DC3000 rep1


E-MTAB-13086:wt Pst DC3000 rep2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universitat de Barcelona

text: public

text: E-MTAB-13086:wt Pst DC3000 rep2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: thale cress

text: sporophyte vegetative stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: Pseudomonas syringae pv. tomato DC3000

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: wt Pst DC3000 rep2


E-MTAB-13086:wt Pst DC3000 rep3

text: Universitat de Barcelona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13086:wt Pst DC3000 rep3

characteristic: age

text: ArrayExpress

text: not collected

text: thale cress

text: sporophyte vegetative stage

text: wild type genotype

text: not collected

text: Pseudomonas syringae pv. tomato DC3000

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: wt Pst DC3000 rep3

characteristic: title


text: Robert Koch Institute

text: public

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-6E13148E-6401-46F9-831E-64933FB6F284

text: RKI-OSEDA

text: SYNLAB MVZ Leinfelden-Echterdingen, Nikolaus-Otto-Str. 6; 70771 Leinfelden-Echterdingen

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Random sampling

text: IMS-10150-CVDP-A659177F-88D7-44EC-8589-03097D947D9A

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-9788D234-7D19-4560-AEF7-7FB985D58DC6

text: RKI-OSEDA

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

text: public

text: Random sampling

text: IMS-10150-CVDP-1A6671F1-144C-42FC-A1B5-2006A26597A4

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


text: Robert Koch Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-D89398C6-791E-44F6-A637-9AD2C99CBFA7

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10150-CVDP-63940B1C-3F85-4935-BA69-362AE931130E

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: Molecular surveillance of SARS-CoV-2 in Germany

characteristic: title


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

text: IMS-10150-CVDP-7362917B-EA09-4DAE-B3C3-7078F71D2B7D

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-AEF30B8A-4B9C-4F36-85A9-5748A357DA1F

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

text: IMS-10150-CVDP-C765EEC3-E2D9-4F26-80A9-85FD8484CABF

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

characteristic: SRA accession

text: Random sampling

text: IMS-10150-CVDP-06B15D48-076C-485A-9510-EE56E440DB74

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-4D74DFB7-2319-4EB8-84BF-FDDF2445194A

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10150-CVDP-FBE9EAB5-9A19-4592-BEF2-3D594FFA9AD9

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

text: IMS-10150-CVDP-C3DC810A-206B-4116-90A5-2C890A23DD0C

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-6D7753A5-3FA2-4222-94B6-DDCC6499DCC8

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

text: IMS-10150-CVDP-992A5301-8EE5-436C-845A-976F6548A93B

text: RKI-OSEDA

text: SYNLAB MVZ Leinfelden-Echterdingen, Nikolaus-Otto-Str. 6; 70771 Leinfelden-Echterdingen

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

characteristic: SRA accession

text: Random sampling

text: IMS-10150-CVDP-52E38581-466C-47A4-991E-A8F8572B5BEC

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-47749E83-8D9D-4683-8B86-54362655666E

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10150-CVDP-41F8D9FC-9D91-4981-840F-C5098D8A11CC

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

text: IMS-10150-CVDP-70A9AA6E-931A-4784-BED5-1E29B7DB5277

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-F585CEC0-30C7-471B-A01A-612CCCA57260

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Molecular surveillance of SARS-CoV-2 in Germany


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

text: IMS-10150-CVDP-BA7D2AA9-8721-4D77-96FE-E7B2A377FDDC

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

characteristic: SRA accession

text: Random sampling

text: IMS-10150-CVDP-1D696ABB-CD7E-47C6-9839-CC53D50944B7

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-AB6FB922-6C24-4394-B086-244B32F88493

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

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text: not provided

characteristic: collector name

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characteristic: geographic location (region and locality)

text: Human

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text: not provided

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characteristic: organism

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text: Robert Koch Institute

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text: RKI-OSEDA

text: not provided

text: Germany

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text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: public

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characteristic: Sampling Strategy

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text: RKI-OSEDA

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text: MVZ Labor Dr. Limbach & Kollegen GbR, Im Breitspiel 15; 69126 Heidelberg

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

characteristic: INSDC center name

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characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

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text: not provided

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text: Homo sapiens

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characteristic: organism

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text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

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text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

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text: Robert Koch Institute

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text: not provided

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text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Robert Koch Institute

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text: not provided

characteristic: collector name

text: Germany

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text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

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text: not provided

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text: not provided

characteristic: isolate

characteristic: sample capture status


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characteristic: Submitter Id

text: RKI-OSEDA

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characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Rhineland-Palatinate

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


text: Robert Koch Institute

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text: Random sampling

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text: SYNLAB MVZ Leinfelden-Echterdingen, Nikolaus-Otto-Str. 6; 70771 Leinfelden-Echterdingen

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

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text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: active surveillance in response to outbreak

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text: RKI-OSEDA

text: not provided

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text: Human

text: not provided

text: Homo sapiens

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text: not provided

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text: not provided

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text: not provided

characteristic: isolate

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text: Molecular surveillance of SARS-CoV-2 in Germany


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text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: Robert Koch Institute

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text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Baden-Wurttemberg

characteristic: geographic location (region and locality)

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text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

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text: not provided

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text: not provided

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text: not provided

characteristic: isolate

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text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Baden-Wurttemberg

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

characteristic: INSDC center name

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text: not provided

characteristic: collector name

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text: not provided

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text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Baden-Wurttemberg

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text: not provided

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text: not provided

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text: Robert Koch Institute

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text: not provided

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characteristic: geographic location (country and/or sea)

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text: Human

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text: Homo sapiens

text: not provided

text: not provided

text: not provided


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characteristic: collector name

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text: not provided

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text: IMS-10013-CVDP-3A717AB8-9FF7-4298-A1F8-F7FC7ED5763B

text: RKI-OSEDA

text: Sonic - Labor Staber MVZ Kassel, Herkulesstr. 34 A; 34119 Kassel

text: not provided

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text: Homo sapiens

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text: Europe/Germany/Hesse

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

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text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Hesse

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

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text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

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characteristic: SRA accession

text: Random sampling

text: IMS-10116-CVDP-D6621EF0-291B-4734-AA3C-DB6CEEEE3E0A

text: RKI-OSEDA

text: Klinikum Darmstadt GmbH, Grafenstraße 9; 64283 Darmstadt

text: not provided

text: Germany

text: Europe/Germany/Hesse

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

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characteristic: host subject id

text: not provided

characteristic: isolate

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text: Robert Koch Institute

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text: public

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characteristic: Sampling Strategy

text: IMS-10116-CVDP-E66683A3-72A8-49E4-BC0B-7C2897D41E94

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

text: Krankenhausgesellschaft St. Vincenz mbH, Auf dem Schafsberg; 65549 Limburg

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Hesse

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10285-CVDP-B5085CD7-2A37-4F49-9E8D-9B334EB424BE

text: RKI-OSEDA

text: IMD - MVZ Labor Greifswald, Vitus-Bering-Straße 27a; 17493 Greifswald

text: not provided

characteristic: collector name

text: Germany

text: Europe/Germany/Mecklenburg-Western Pomerania

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: Molecular surveillance of SARS-CoV-2 in Germany

characteristic: title


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

text: IMS-10285-CVDP-CB54AA87-31ED-4CF3-B026-7D915FEAA4F2

text: RKI-OSEDA

text: not provided

text: Germany

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10285-CVDP-3B671A6E-B22D-4207-9505-FE91ECDBE008

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

text: IMS-10285-CVDP-F675CF19-3B2C-4A38-9B5B-0004A1F174BA

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

characteristic: SRA accession

text: Random sampling

text: IMS-10285-CVDP-BF3756E9-F972-44E9-811E-15C919A737A9

text: RKI-OSEDA

text: not provided

text: Germany

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10285-CVDP-164A893C-6425-4817-A1DD-7B5E2AA4C71E

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10285-CVDP-5A7C728A-AF51-4F31-A8D7-5A3F75882305

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Random sampling

text: IMS-10136-CVDP-14EA1AA7-958D-45D7-ABB9-A722F88F6709

text: RKI-OSEDA

text: IMD - Medizinisches Labor Rostock, Südring 81; 18059 Rostock

text: not provided

text: Germany

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10136-CVDP-C06C7D96-3595-433B-AE9D-5BF593F47D5A

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


text: RUTGERS UNIVERISTY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:RUTGERS UNIVERISTY

text: anthropogenic terrestrial biome [ENVO:01000219]

characteristic: broad-scale environmental context

text: subject 29 week 0 saliva sample

characteristic: description

text: saliva material [ENVO:02000036]

characteristic: environmental medium

text: USA

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: female

characteristic: known pathogenicity

text: adult mouth [ENVO:0000165]

characteristic: local environmental context

text: human saliva metagenome

characteristic: organism

text: COVID Saliva

characteristic: project name

text: human saliva metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RUTGERS UNIVERISTY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: subject 29 week 2 saliva sample

text: saliva material [ENVO:02000036]

text: USA

text: female

characteristic: host sex

text: adult mouth [ENVO:0000165]

text: human saliva metagenome

text: COVID Saliva

text: human saliva metagenome


text: RUTGERS UNIVERISTY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: broad-scale environmental context

characteristic: collection date

text: subject 29 week 24 saliva sample

text: saliva material [ENVO:02000036]

text: USA

characteristic: geographic location (country and/or sea)

text: female

text: adult mouth [ENVO:0000165]

text: human saliva metagenome

text: COVID Saliva

text: human saliva metagenome


text: RUTGERS UNIVERISTY

text: public

text: subject 30 week 0 saliva sample

characteristic: description

text: saliva material [ENVO:02000036]

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: female

characteristic: known pathogenicity

text: adult mouth [ENVO:0000165]

characteristic: local environmental context

text: human saliva metagenome

characteristic: organism

text: COVID Saliva

text: human saliva metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: public

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text: subject 30 week 2 saliva sample

text: saliva material [ENVO:02000036]

text: USA

text: female

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text: COVID Saliva

characteristic: project name

text: human saliva metagenome

characteristic: title


text: RUTGERS UNIVERISTY

characteristic: INSDC center name

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characteristic: Submitter Id

characteristic: broad-scale environmental context

text: subject 30 week 24 saliva sample

text: saliva material [ENVO:02000036]

text: USA

text: female

characteristic: host sex

text: adult mouth [ENVO:0000165]

text: human saliva metagenome

text: COVID Saliva

text: human saliva metagenome


text: RUTGERS UNIVERISTY

text: public

characteristic: collection date

text: subject 33 week 0 saliva sample

characteristic: description

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characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: female

characteristic: known pathogenicity

text: adult mouth [ENVO:0000165]

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: RUTGERS UNIVERISTY

text: public

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text: COVID Saliva

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text: RUTGERS UNIVERISTY

characteristic: INSDC center name

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text: subject 37 week 0 saliva sample

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text: USA

text: female

text: adult mouth [ENVO:0000165]

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characteristic: project name

text: human saliva metagenome

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text: RUTGERS UNIVERISTY

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text: subject 37 week 2 saliva sample

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characteristic: environmental medium

text: USA

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characteristic: geographic location (latitude)

text: female

characteristic: host sex

text: adult mouth [ENVO:0000165]

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: RUTGERS UNIVERISTY

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text: subject 37 week 24 saliva sample

text: saliva material [ENVO:02000036]

text: USA

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text: female

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text: adult mouth [ENVO:0000165]

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text: RUTGERS UNIVERISTY

characteristic: INSDC center name

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text: subject 93 week 0 saliva sample

text: saliva material [ENVO:02000036]

text: USA

text: female

text: adult mouth [ENVO:0000165]

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text: COVID Saliva

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text: RUTGERS UNIVERISTY

text: public

characteristic: broad-scale environmental context

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text: subject 94 week 0 saliva sample

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text: saliva material [ENVO:02000036]

characteristic: environmental medium

text: USA

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text: male

text: adult mouth [ENVO:0000165]

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text: RUTGERS UNIVERISTY

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text: subject 106 week 24 saliva sample

text: saliva material [ENVO:02000036]

text: USA

characteristic: geographic location (latitude)

text: female

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text: adult mouth [ENVO:0000165]

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text: RUTGERS UNIVERISTY

characteristic: INSDC center name

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text: public

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characteristic: Submitter Id

text: subject 114 week 0 saliva sample

text: saliva material [ENVO:02000036]

text: USA

characteristic: geographic location (longitude)

text: male

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text: adult mouth [ENVO:0000165]

text: human saliva metagenome

text: COVID Saliva

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text: RUTGERS UNIVERISTY

text: public

characteristic: broad-scale environmental context

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text: subject 114 week 4 saliva sample

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text: saliva material [ENVO:02000036]

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text: USA

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text: male

text: adult mouth [ENVO:0000165]

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characteristic: ENA-CHECKLIST

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text: subject 114 week 24 saliva sample

text: saliva material [ENVO:02000036]

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text: RUTGERS UNIVERISTY

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text: public

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text: subject 167 week 0 saliva sample

text: saliva material [ENVO:02000036]

text: USA

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text: female

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text: adult mouth [ENVO:0000165]

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text: RUTGERS UNIVERISTY

text: public

characteristic: broad-scale environmental context

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text: subject 167 week 2 saliva sample

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text: saliva material [ENVO:02000036]

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text: USA

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text: female

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text: adult mouth [ENVO:0000165]

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: RUTGERS UNIVERISTY

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characteristic: SRA accession

text: subject 167 week 24 saliva sample

text: saliva material [ENVO:02000036]

text: USA

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text: adult mouth [ENVO:0000165]

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text: human saliva metagenome

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text: COVID Saliva

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text: RUTGERS UNIVERISTY

characteristic: INSDC center name

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characteristic: Submitter Id

text: subject 218 week 0 saliva sample

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text: USA

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text: RUTGERS UNIVERISTY

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characteristic: broad-scale environmental context

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text: subject 218 week 24 saliva sample

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text: saliva material [ENVO:02000036]

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text: USA

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text: male

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text: adult mouth [ENVO:0000165]

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characteristic: External Id

text: RUTGERS UNIVERISTY

text: public

characteristic: SRA accession

text: subject 232 week 0 saliva sample

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text: male

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text: RUTGERS UNIVERISTY

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text: subject 232 week 4 saliva sample

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text: subject 232 week 24 saliva sample

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text: USA

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text: male

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text: RUTGERS UNIVERISTY

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text: subject 244 week 0 saliva sample

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text: subject 244 week 24 saliva sample

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text: USA

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text: female

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text: adult mouth [ENVO:0000165]

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text: public

characteristic: broad-scale environmental context

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text: subject 254 week 0 saliva sample

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text: subject 266 week 2 saliva sample

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text: USA

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text: female

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characteristic: broad-scale environmental context

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text: subject 275 week 0 saliva sample

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text: USA

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text: female

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text: subject 288 week 0 saliva sample

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text: subject 299 week 4 saliva sample

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characteristic: broad-scale environmental context

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text: subject 439 week 0 saliva sample

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text: subject 439 week 2 saliva sample

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text: subject 721 week 0 saliva sample

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text: female

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text: subject 721 week 24 saliva sample

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text: female

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text: subject 867 week 0 saliva sample

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text: subject 899 week 0 saliva sample

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text: male

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text: subject 899 week 24 saliva sample

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text: adult mouth [ENVO:0000165]

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text: subject 955 week 0 saliva sample

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text: male

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