characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

text: public

text: Universidad CEU,Valencia

text: Smoked sardine

text: Spain

text: not applicable

text: CLIP 2021/00424

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00424


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUT PASTEUR

characteristic: Submitter Id

text: Universidad CEU,Valencia

characteristic: collection date

text: Smoked fish product

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: CLIP 2021/00425

characteristic: isolate

text: Food

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00425

characteristic: title


characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

text: public

text: Universidad CEU,Valencia

text: Smoked fish product

text: Spain

text: not applicable

text: CLIP 2021/00426

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00426


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSTITUT PASTEUR

text: public

text: Universidad CEU,Valencia

text: Surface sponge

text: Spain

text: not applicable

text: CLIP 2021/00427

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00427


characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

characteristic: INSDC first public

text: public

text: Universidad CEU,Valencia

text: Sweet chorizo

text: Spain

text: not applicable

text: CLIP 2021/00429

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00429


text: INSTITUT PASTEUR

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Universidad CEU,Valencia

text: Matured cheese

text: Spain

text: not applicable

text: CLIP 2021/00430

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00430


text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Universidad CEU,Valencia

text: Surface sponge

text: Spain

text: not applicable

text: CLIP 2021/00432

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00432


text: INSTITUT PASTEUR

text: public

text: Universidad CEU,Valencia

characteristic: collection date

text: Surface sponge

characteristic: description

text: Spain

text: not applicable

text: CLIP 2021/00433

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00433


text: INSTITUT PASTEUR

text: public

text: Universidad CEU,Valencia

text: Blood sausage

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

text: CLIP 2021/00434

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00434


text: INSTITUT PASTEUR

text: public

text: Universidad CEU,Valencia

text: Majorcan sausage

text: Spain

text: not applicable

characteristic: host scientific name

text: CLIP 2021/00437

characteristic: isolate

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00437


text: INSTITUT PASTEUR

text: public

text: Universidad CEU,Valencia

text: Smoked Salmon

text: Spain

text: not applicable

text: CLIP 2021/00439

text: Food

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00439

characteristic: title


characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

text: public

text: Universidad CEU,Valencia

text: Chorizo

text: Spain

text: not applicable

text: CLIP 2021/00441

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00441


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSTITUT PASTEUR

text: public

text: Universidad CEU,Valencia

text: Surface sponge

text: Spain

text: not applicable

text: CLIP 2021/00444

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00444


characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

characteristic: INSDC first public

text: public

text: Universidad CEU,Valencia

text: Smoked Salmon

text: Spain

text: not applicable

text: CLIP 2021/00446

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: L. monocytogenes CLIP 2021/00446


text: INSTITUT PASTEUR

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: France

text: CLIP 2009/00391

text: Unknown

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2009/00391


text: CHRISTIAN MEDICAL COLLEGE

text: public

characteristic: SRA accession

tag: Namespace:CHRISTIAN MEDICAL COLLEGE

characteristic: Submitter Id

text: Ceftriaxone resistant Salmonella Typhi outbreak in India 2022-2023

text: India

text: not provided

text: Salmonella enterica subsp. enterica serovar Typhi

text: Blood

text: Typhi

characteristic: serovar

characteristic: strain


AESHKHAN

text: CHRISTIAN MEDICAL COLLEGE

text: public

text: AESHKHAN

characteristic: collection date

characteristic: description

text: India

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: AESHKHAN

text: Blood

text: Typhi

text: AESHKHAN


NEHA

text: CHRISTIAN MEDICAL COLLEGE

text: public

text: NEHA

text: India

text: not provided

characteristic: host scientific name

text: NEHA

characteristic: isolate

text: Blood

characteristic: organism

text: Typhi

text: NEHA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Diana Pilvar

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

text: Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


characteristic: ENA-LAST-UPDATE

text: TBgroup-OUCRU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:533-71201

characteristic: Submitter Id

characteristic: collection date

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: ENA-CHECKLIST

text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:533-71202

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: TBgroup-OUCRU

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:533-71203

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:533-71204

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:533-71205

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:533-71206

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:533-71207

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71208

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71209

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71210

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71211

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71212

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71213

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71214

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71215

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71216

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71217

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71218

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71219

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71220

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71221

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71222

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71223

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71224

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71225

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71226

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71227

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71228

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71229

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71230

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71231

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71232

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:534-71233

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71234

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71235

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71236

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71237

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71238

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71239

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71240

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71241

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71242

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71243

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71244

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71245

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71246

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71247

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71248

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71249

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71250

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71251

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71252

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71253

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71254

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71255

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71256

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71257

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:535-71258

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71259

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71260

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71261

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71262

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71263

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71264

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71265

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71266

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71267

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71268

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71269

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71270

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71271

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: TBgroup-OUCRU

text: public

text: ena-SAMPLE-TAB-27-09-2023-11:56:17:536-71272

text: Viet Nam

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status

text: not provided

characteristic: title

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.1 @ Galaxy

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Diana Pilvar

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

unit: years

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

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text: Streptococcus pneumoniae

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text: INSTITUT PASTEUR

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text: public

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text: public

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text: Costa Rica

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text: INSTITUT PASTEUR

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text: INCIENSA

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text: Costa Rica

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text: public

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text: public

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text: Costa Rica

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text: public

text: UCR

text: Food

text: Costa Rica

text: Listeria monocytogenes

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text: INSTITUT PASTEUR

text: public

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text: Food

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text: Listeria monocytogenes CLIP 2017/00416


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text: INSTITUT PASTEUR

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text: Listeria monocytogenes

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text: Listeria monocytogenes CLIP 2017/00418


text: INSTITUT PASTEUR

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text: Food

text: Costa Rica

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text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2017/00419


text: INSTITUT PASTEUR

text: public

text: UCR

text: Food

text: Costa Rica

text: Listeria monocytogenes

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text: Listeria monocytogenes CLIP 2017/00420


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text: Food

text: Costa Rica

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2017/00421


text: INSTITUT PASTEUR

text: public

text: UCR

text: Food

text: Costa Rica

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2017/00422


text: INSTITUT PASTEUR

text: public

text: UCR

text: Food

text: Costa Rica

text: Listeria monocytogenes

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text: Listeria monocytogenes CLIP 2017/00423


text: INSTITUT PASTEUR

text: public

text: UCR

text: Food

text: Costa Rica

text: Listeria monocytogenes

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text: Listeria monocytogenes CLIP 2017/00424


text: INSTITUT PASTEUR

text: public

text: UCR

text: Food

text: Costa Rica

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2017/00425


text: INSTITUT PASTEUR

text: public

text: UCR

text: Food

text: Costa Rica

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text: Listeria monocytogenes CLIP 2017/00426


text: INSTITUT PASTEUR

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text: Listeria monocytogenes CLIP 2019/02610


text: INSTITUT PASTEUR

text: public

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text: Listeria monocytogenes CLIP 2019/02616


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text: INSTITUT PASTEUR

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text: Listeria monocytogenes CLIP 2019/02619


text: INSTITUT PASTEUR

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text: Food

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text: Listeria monocytogenes CLIP 2019/02620


text: INSTITUT PASTEUR

text: public

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text: Costa Rica

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2019/02621


text: INSTITUT PASTEUR

text: public

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text: Human

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text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2019/02622


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text: public

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text: Costa Rica

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2019/02623


text: INSTITUT PASTEUR

text: public

text: SENASA

text: Food

text: Costa Rica

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2019/02742


text: INSTITUT PASTEUR

text: public

text: SENASA

text: Food

text: Costa Rica

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2019/02743


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text: public

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text: Food

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text: Listeria monocytogenes CLIP 2019/02744


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text: public

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text: Food

text: Costa Rica

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text: Listeria monocytogenes CLIP 2019/02745


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text: Listeria monocytogenes CLIP 2019/02746


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text: Food

text: Costa Rica

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text: Costa Rica

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text: public

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text: Food

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text: Listeria monocytogenes CLIP 2019/02750


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text: Costa Rica

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text: Listeria monocytogenes CLIP 2019/02757


text: INSTITUT PASTEUR

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text: SENASA

text: Food

text: Costa Rica

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text: Listeria monocytogenes CLIP 2019/02759


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text: Production environment

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text: Listeria monocytogenes CLIP 2019/02761


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text: Food

text: Costa Rica

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text: Listeria monocytogenes CLIP 2019/02763


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text: UCR

text: Food

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text: Costa Rica

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tag: Namespace:Anthony Smith, NICD

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text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: description

text: South Africa

text: Eastern Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Give

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Oranienburg


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa

text: Eastern Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Anatum


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

text: South Africa

text: Free State

text: Human, Urine

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Bovismorbificans


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar

characteristic: title


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Dublin


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Amager

characteristic: serovar


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: strain


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

tag: Namespace:Kilimanjaro Clinical Research Institute

text: Kilimanjaro Clinical Research Institute

text: Brucella abortus isolated from blood culture from a febrile patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Endulen Hospital, Arusha Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

characteristic: isolation source host-associated

text: Brucella abortus

text: Brucella abortus

characteristic: scientific name

text: Brucella abortus

text: Brucella abortus ST32 strain F1/18-0221


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Seoul National University

characteristic: INSDC first public

text: public

tag: Namespace:Seoul National University

characteristic: Submitter Id

characteristic: collection date

text: This sample comprises reads from the GReAT and CRyPTIC consortia that were not mapped to the H37Rv reference. These pre-assembled reads provide insights into the genomic regions not covered by the standard H37Rv reference, underscoring the genetic diversity and lineage discrepancies in MTB.

characteristic: description

text: not applicable

characteristic: geographic location (country and/or sea)

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Combined Unmapped Reads from GReAT and CRyPTIC Consortia for Mycobacterium tuberculosis


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684943 of study SRP214635.

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: uncultured Actinomyces sp.

text: Samples of bacteria from under the gumline from patients with aggressive periodontitis

characteristic: project name

characteristic: sample derived from

text: uncultured Actinomyces sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684943_bin.1_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684959 of study SRP214635.

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Neisseria sp.

characteristic: organism

text: uncultured Neisseria sp.

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Neisseria;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684959_bin.1_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684961 of study SRP214635.

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: [Eubacterium] saphenum

characteristic: project name

characteristic: sample derived from

text: [Eubacterium] saphenum

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__[Eubacterium] saphenum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684961_bin.3_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684962 of study SRP214635.

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Fretibacterium sp.

characteristic: organism

text: uncultured Fretibacterium sp.

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Synergistetes;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Fretibacterium;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684962_bin.2_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684963 of study SRP214635.

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: uncultured Treponema sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Treponema sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684963_bin.3_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684964 of study SRP214635.

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Candidatus Saccharibacteria bacterium

characteristic: organism

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684964_bin.1_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684969 of study SRP214635.

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: uncultured Neisseria sp.

text: Samples of bacteria from under the gumline from patients with aggressive periodontitis

characteristic: project name

characteristic: sample derived from

text: uncultured Neisseria sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Neisseria;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684969_bin.1_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: Rothia dentocariosa

characteristic: organism

text: Rothia dentocariosa

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684969_bin.2_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: Streptococcus sanguinis

characteristic: project name

characteristic: sample derived from

text: Streptococcus sanguinis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684969_bin.3_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: Streptococcus oralis

characteristic: organism

text: Streptococcus oralis

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684969_bin.4_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684971 of study SRP214635.

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: Mogibacterium timidum

characteristic: project name

characteristic: sample derived from

text: Mogibacterium timidum

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__Mogibacterium;s__Mogibacterium timidum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.1_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: Peptostreptococcus stomatis

characteristic: organism

text: Peptostreptococcus stomatis

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus stomatis

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.10_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: uncultured Candidatus Saccharibacteria bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.11_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: Porphyromonas endodontalis

characteristic: organism

text: Samples of bacteria from under the gumline from patients with aggressive periodontitis

text: Porphyromonas endodontalis

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas endodontalis

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.12_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.13_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: Fusobacterium nucleatum

characteristic: organism

text: Fusobacterium nucleatum

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.14_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684971 of study SRP214635.

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: [Eubacterium] nodatum

characteristic: project name

characteristic: sample derived from

text: [Eubacterium] nodatum

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__[Eubacterium] nodatum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.15_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Selenomonas sp.

characteristic: organism

text: uncultured Selenomonas sp.

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.16_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: Desulfobulbus oralis

characteristic: project name

characteristic: sample derived from

text: Desulfobulbus oralis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfobacterales;f__Desulfobulbaceae;g__Desulfobulbus;s__Desulfobulbus oralis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.18_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Eggerthellaceae bacterium

characteristic: organism

text: uncultured Eggerthellaceae bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.2_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: Filifactor alocis

text: Samples of bacteria from under the gumline from patients with aggressive periodontitis

characteristic: project name

characteristic: sample derived from

text: Filifactor alocis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Filifactor;s__Filifactor alocis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.20_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Treponema sp.

characteristic: organism

text: uncultured Treponema sp.

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.3_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: uncultured Peptoniphilaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Peptoniphilaceae bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Tissierellia;o__Tissierellales;f__Peptoniphilaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.4_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684971 of study SRP214635.

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Candidatus Saccharibacteria bacterium

characteristic: organism

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.6_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684971_bin.7_MetaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.3

characteristic: binning software

text: human digestive system

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: subgingival plaque

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: oral metagenome

text: oral cavity

text: oral metagenome

text: uncultured Firmicutes bacterium

characteristic: organism

text: uncultured Firmicutes bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: SRR9684971_bin.9_MetaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MetaWRAP v1.3

text: human digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR9684980 of study SRP214635.

text: subgingival plaque

characteristic: environmental medium

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: oral metagenome

text: oral cavity

characteristic: local environmental context

text: oral metagenome

characteristic: metagenomic source

text: Actinomyces oris

text: Samples of bacteria from under the gumline from patients with aggressive periodontitis

characteristic: project name

characteristic: sample derived from

text: Actinomyces oris

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: SRR9684980_bin.2_MetaWRAP_v1.3_MAG

characteristic: title