COSC-2 fracture_4

characteristic: ENA-CHECKLIST

characteristic: External Id

text: LINNAEUS UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: COSC-2 fracture_4

text: igneous rock (ENVO: 00002013)

text: Sweden

text: rock metagenome

characteristic: pcr primers

text: COSC-2 microbiology 16S 2020

characteristic: project name

text: rock metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


COSC-2 fracture_5

status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LINNAEUS UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: COSC-2 fracture_5

tag: Namespace:LINNAEUS UNIVERSITY

characteristic: Submitter Id

text: continental subsurface zone (ENVO:01000942)

characteristic: broad-scale environmental context

characteristic: collection date

text: DNA extracted from both drill cores, drilling fluid and natural fractures (Spring + Summer 2020)

characteristic: description

text: igneous rock (ENVO: 00002013)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: solid environmental material (ENVO:01000814)

characteristic: local environmental context

text: rock metagenome

characteristic: organism

text: 341F (CCTACGGGNGGCWGCAG) and 805R (GACTACHVGGGTATCTAATCC)

text: COSC-2 microbiology 16S 2020

text: rock metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: title


COSC-2 fracture_8

characteristic: ENA-CHECKLIST

characteristic: External Id

text: LINNAEUS UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: COSC-2 fracture_8

text: igneous rock (ENVO: 00002013)

text: Sweden

text: rock metagenome

characteristic: pcr primers

text: COSC-2 microbiology 16S 2020

characteristic: project name

text: rock metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


COSC-2 fracture_12

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LINNAEUS UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: COSC-2 fracture_12

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: description

text: igneous rock (ENVO: 00002013)

text: Sweden

text: rock metagenome

text: COSC-2 microbiology 16S 2020

text: rock metagenome

text: Illumina MiSeq

text: 16S rRNA


COSC-2 fracture_13

characteristic: ENA-CHECKLIST

characteristic: External Id

text: LINNAEUS UNIVERSITY

text: public

text: COSC-2 fracture_13

text: igneous rock (ENVO: 00002013)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: rock metagenome

characteristic: organism

text: COSC-2 microbiology 16S 2020

text: rock metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: title


COSC-2 fracture_17

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LINNAEUS UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: COSC-2 fracture_17

text: igneous rock (ENVO: 00002013)

text: Sweden

text: rock metagenome

characteristic: pcr primers

text: COSC-2 microbiology 16S 2020

characteristic: project name

text: rock metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


COSC-2 fracture_control

characteristic: ENA-CHECKLIST

characteristic: External Id

text: LINNAEUS UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: COSC-2 fracture_control

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: description

text: igneous rock (ENVO: 00002013)

text: Sweden

text: rock metagenome

text: COSC-2 microbiology 16S 2020

text: rock metagenome

text: Illumina MiSeq

text: 16S rRNA


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Maria Sklodowska-Curie National Research Institute of Oncology Gliwice Branch

text: ArrayExpress

characteristic: broker name

text: HaCaT

text: keratinocyte

text: not collected

text: human

characteristic: common name

text: Protocols: Each culture insert was washed twice with ice-cold calcium/magnesium free PBS and next the epidermis was submerged with RNA extraction buffer and scraped off the polycarbonate membrane using rubber tipped cell scraper. The suspension was immediately snap-frozen in dry ice and stored at -70°C until the total RNA extraction procedure. Lentivirus-mediated shRNA modified HaCaT cells were plated onto polycarbonate membranes of the transwell cell culture inserts coated with extracellular matrix protein and maintained in a standard DMEM high glucose medium supplemented with 10% FBS in submerged culture for 72 h. Subsequently, the cells were exposed to the air–liquid interface (ALI) culture by removing the medium in the upper compartment; while the standard DMEM high glucose/FBS medium supplemented with 2 ng/ml TGFα was placed under the filter. The medium was renewed every two days during the 18 days of ALI culture. Wild type HaCaT cells were modified by lentivirus-mediated shRNA method to generate HSPA2-depleted cell lines. The shRNA sequence (shRNA-4) targeted the coding sequence of human HSPA2 (Gene Entrez ID: 3306), was selected from the Mission shRNA Library (Sigma–Aldrich). shRNA-luc sequence targeting the firefly luciferase (luc) gene was used as a control nontargeting shRNA. Sense and antisense oligonucleotides were annealed and inserted into the pLVX-shRNA1 (bearing a puromycin resistance gene) vector (Clontech/Takara Bio) at the BamHI/EcoRI site. Infectious lentiviruses were generated by transfecting shRNA-encoding plasmids into HEK293T packaging cells according to the manufacturer's instructions (Clontech/Takara Bio, Lenti-X shRNA Expression System). Virus-containing supernatants were collected 48 h after transfection and a viral titer was confirmed using Lenti-X GoStix (Clontech/Takara Bio). Cells were transduced using lentiviruses-containing supernatants for 24 hr at 37°C with the addition of polybrene according to the manufacturer's recommendations. A comparable number of HaCaT cells remained viable after transduction with non-targeting or HSPA2-targeting lentiviral vectors and survived puromycin (1 µg/mL) selection for the establishment of stably transduced cell lines. Total RNA was extracted using the GeneJET RNA Purification Kit in accordance with the manufacturer’s protocol. RNA samples were purified from contaminating DNA by treatment with RNase-free DNase I, possible DNA contamination was examined also by a control PCR reaction. 100 ng RNA was used for library preparation Sequencing library was prepared according to the standard Illumina protocol using the TruSeq Stranded mRNA library preparation kit.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: ALI culture

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: epidermis

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Maria Sklodowska-Curie National Research Institute of Oncology Gliwice Branch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: HaCaT

text: keratinocyte

text: not collected

text: human

text: adult

text: normal

text: wild type genotype

text: not collected

text: ALI culture

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: epidermis

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE

text: public

characteristic: collection date

text: inoculum day_0

characteristic: description

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_Yes replicate_a day_20 stage_late degradation

text: France

characteristic: geographic location (country and/or sea)

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_Yes replicate_b day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_Yes replicate_c day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_Yes replicate_a day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_Yes replicate_b day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_Yes replicate_c day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_Yes replicate_a day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_Yes replicate_b day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_Yes replicate_c day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_Yes replicate_a day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_Yes replicate_b day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_Yes replicate_c day_20 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_No replicate_a day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_No replicate_b day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_No replicate_c day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_Yes replicate_a day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_Yes replicate_b day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_Yes replicate_c day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_Yes replicate_a day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_Yes replicate_b day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_Yes replicate_c day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_Yes replicate_a day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_Yes replicate_b day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_Yes replicate_c day_6 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_Yes replicate_a day_13 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_Yes replicate_b day_13 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_Yes replicate_c day_13 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_No replicate_a day_55 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_No replicate_b day_55 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_No replicate_c day_55 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_No replicate_a day_55 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_No replicate_b day_55 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_No replicate_c day_34 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_No replicate_a day_34 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_No replicate_b day_34 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_Control zeolite_No replicate_c day_34 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_No replicate_a day_34 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_No replicate_b day_34 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_No replicate_c day_41 stage_late degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_No replicate_a day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_No replicate_b day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_MET zeolite_No replicate_c day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_No replicate_a day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_No replicate_b day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_NaCl zeolite_No replicate_c day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_No replicate_a day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_No replicate_b day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: INRAE

text: public

text: inhibitor_ERY zeolite_No replicate_c day_20 stage_early degradation

text: France

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: anaerobic digester pellet


text: JOHANNES GUTENBERG UNIVERSITY MAINZ

text: public

tag: Namespace:JOHANNES GUTENBERG UNIVERSITY MAINZ

text: human

characteristic: common name

text: Homo sapiens bone sample

text: Luxembourg

text: Homo sapiens

text: Homo sapiens


text: JOHANNES GUTENBERG UNIVERSITY MAINZ

text: public

text: human

text: Homo sapiens bone sample

text: United Kingdom

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Francis Crick Institute

text: public

tag: Namespace:Francis Crick Institute

text: human

text: Iron Age individual with mosaic Turner syndrome

text: United Kingdom

text: Homo sapiens

text: Homo sapiens


text: Francis Crick Institute

text: public

text: human

text: Iron Age individual with Klinefelter syndrome

text: United Kingdom

text: Homo sapiens

text: Homo sapiens


text: Francis Crick Institute

text: public

text: human

text: Late Medieval individual with Klinefelter syndrome

text: United Kingdom

text: Homo sapiens

text: Homo sapiens


text: Francis Crick Institute

text: public

text: human

text: Post Medieval individual with Klinefelter syndrome

text: United Kingdom

text: Homo sapiens

text: Homo sapiens


text: Francis Crick Institute

text: public

text: human

text: Iron Age individual with Down syndrome

text: United Kingdom

text: Homo sapiens

text: Homo sapiens


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: restricted access

text: Streptococcus pneumoniae

text: restricted access

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Plasmodium falciparum

text: SC

text: public

text: not provided

text: malaria parasite P. falciparum

text: not provided

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: title


characteristic: ENA-CHECKLIST

text: Netherlands Donor Feces Bank

text: public

tag: Namespace:Netherlands Donor Feces Bank

text: whole-genome sequence of multidrug-resistant E. coli from recurrent Cdiff infected patient

text: Netherlands

text: Homo sapiens

characteristic: host scientific name

text: human feces

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: Netherlands Donor Feces Bank

characteristic: INSDC center name

text: public

text: whole-genome sequence of ESBL E. coli from healthy stool donor

text: Netherlands

text: Homo sapiens

text: human feces

text: Escherichia coli

text: Escherichia coli


text: Netherlands Donor Feces Bank

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: whole-genome sequence of vancomycin-resistant Enterococcus faecalis from recunnent Cdiff infected patient

text: Netherlands

text: Homo sapiens

text: human feces

text: Enterococcus faecalis

text: Enterococcus faecalis


text: Netherlands Donor Feces Bank

text: public

characteristic: INSDC status

characteristic: SRA accession

text: whole-genome sequence of multidrug-resistant K. pneumoniae from recurrent Cdiff infected patient

text: Netherlands

text: Homo sapiens

text: human feces

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-FIRST-PUBLIC

text: Netherlands Donor Feces Bank

text: public

characteristic: Submitter Id

text: whole-genome sequence of multidrug-resistant C. freundii from recurrent Cdiff infected patient

text: Netherlands

text: Homo sapiens

text: human feces

text: Citrobacter freundii

text: Citrobacter freundii


characteristic: ENA-LAST-UPDATE

text: Netherlands Donor Feces Bank

text: public

characteristic: collection date

text: whole-genome sequence of ESBL E. coli from recurrent Cdiff infected patient

text: Netherlands

text: Homo sapiens

text: human feces

text: Escherichia coli

text: Escherichia coli


text: Netherlands Donor Feces Bank

text: public

text: whole-genome sequence of ESBL C. freundii from recurrent Cdiff infected patient

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: human feces

text: Citrobacter freundii

text: Citrobacter freundii


text: Netherlands Donor Feces Bank

text: public

text: whole-genome sequence of ESBL P. mirabilis from recurrent Cdiff infected patient

text: Netherlands

text: Homo sapiens

text: human feces

text: Proteus mirabilis

characteristic: organism

text: Proteus mirabilis


text: Netherlands Donor Feces Bank

text: public

text: whole-genome sequence of multidrug-resistant E. hormaechei_A (cloacae) from recurrent Cdiff infected patient

text: Netherlands

text: Homo sapiens

text: human feces

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Netherlands Donor Feces Bank

text: public

text: Netherlands

text: Homo sapiens

text: human feces

text: Morganella morganii

text: Morganella morganii


text: Netherlands Donor Feces Bank

text: public

text: whole-genome sequence from Enterococcus_B gallinarum from recurrent Cdiff infected patient

text: Netherlands

text: Homo sapiens

text: human feces

text: Enterococcus gallinarum

text: Enterococcus gallinarum


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: not provided

text: malaria parasite P. vivax

characteristic: common name

text: not provided

text: Plasmodium vivax

text: Plasmodium vivax


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:GFZ German Research Centre for Geosciences

text: Oil sample

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil Well1

characteristic: title


characteristic: External Id

text: GFZ German Research Centre for Geosciences

text: public

text: Oil sample

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil Well1


characteristic: INSDC center name

text: public

text: Oil sample

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil Well2


characteristic: INSDC first public

text: public

text: Oil sample

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil Well3


34 NC isooctane

characteristic: INSDC last update

text: public

text: 34 NC isooctane

text: Negative control isooctane

text: Germany

text: oil metagenome

text: oil metagenome

text: Negative control isooctane


36 NC kit

text: public

characteristic: INSDC status

text: 36 NC kit

text: Negative control

text: Germany

text: oil metagenome

text: oil metagenome

text: Negative control


42 AA API17 psk

text: public

characteristic: SRA accession

text: 42 AA API17 psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


43 AA API17 psk

characteristic: ENA-FIRST-PUBLIC

text: public

text: 43 AA API17 psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


44 AA API17 psk

text: public

text: 44 AA API17 psk

characteristic: Submitter Id

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


45 AA API26 psk

characteristic: ENA-LAST-UPDATE

text: public

text: 45 AA API26 psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


46 AA API26 psk

text: public

text: 46 AA API26 psk

characteristic: collection date

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


47 AA API26 psk

text: public

text: 47 AA API26 psk

text: Oil mix

characteristic: description

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


48 AA API 34 psk

text: public

text: 48 AA API 34 psk

text: Oil mix

text: Germany

characteristic: geographic location (country and/or sea)

text: oil metagenome

text: oil metagenome

text: Oil mix


49 AA API 34 psk

text: public

text: 49 AA API 34 psk

text: Oil mix

text: Germany

text: oil metagenome

characteristic: organism

text: oil metagenome

text: Oil mix


50 AA API 34 psk

text: public

text: 50 AA API 34 psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


51 AA API 40 psk

text: public

text: 51 AA API 40 psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


52 AA API 40 psk

text: public

text: 52 AA API 40 psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


53 AA API 40 psk

text: public

text: 53 AA API 40 psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


60 AA NC extr psk

text: public

text: 60 AA NC extr psk

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


61 AA API17 phchlo

text: public

text: 61 AA API17 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


62 AA API17 phchlo

text: public

text: 62 AA API17 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


64 AA API17 phchlo

text: public

text: 64 AA API17 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


65 AA API26 phchlo

text: public

text: 65 AA API26 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


66 AA API26 phchlo

text: public

text: 66 AA API26 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


67 AA API26 phchlo

text: public

text: 67 AA API26 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


68 AA API34 phchlo

text: public

text: 68 AA API34 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


69 AA API34 phchlo

text: public

text: 69 AA API34 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


70 AA API34 phchlo

text: public

text: 70 AA API34 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


71 AA API40 phchlo

text: public

text: 71 AA API40 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


72 AA API40 phchlo

text: public

text: 72 AA API40 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


73 AA API40 phchlo

text: public

text: 73 AA API40 phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


74 AA NC phchlo

text: public

text: 74 AA NC phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


75 AA NC phchlo

text: public

text: 75 AA NC phchlo

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


76 AA API17 ook

text: public

text: 76 AA API17 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


77 AA API17 ook

text: public

text: 77 AA API17 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


78 AA API17 ook

text: public

text: 78 AA API17 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


80 AA API26 ook

text: public

text: 80 AA API26 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


82 AA API26 ook

text: public

text: 82 AA API26 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


83 AA API26 ook

text: public

text: 83 AA API26 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


84 AA API34 ook

text: public

text: 84 AA API34 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


86 AA API34 ook

text: public

text: 86 AA API34 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


87 AA API34 ook

text: public

text: 87 AA API34 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


88 AA API40 ook

text: public

text: 88 AA API40 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


89 AA API40 ook

text: public

text: 89 AA API40 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


90 AA API40 ook

text: public

text: 90 AA API40 ook

text: Oil mix

text: Germany

text: oil metagenome

text: oil metagenome

text: Oil mix


91 AA NC ook

text: public

text: 91 AA NC ook

text: Negative control

text: Germany

text: oil metagenome

text: oil metagenome

text: Negative control


92 AA NC ook

text: public

text: 92 AA NC ook

text: Negative control

text: Germany

text: oil metagenome

text: oil metagenome

text: Negative control


93 AA NC PCR

text: public

text: 93 AA NC PCR

text: Negative control

text: Germany

text: oil metagenome

text: oil metagenome

text: Negative control


94 AA NC PCR

text: public

text: 94 AA NC PCR

text: Negative control

text: Germany

text: oil metagenome

text: oil metagenome

text: Negative control


text: public

text: Negative control

text: Germany

text: oil metagenome

text: oil metagenome

text: Negative control


text: public

text: Positive control

text: Germany

text: oil metagenome

text: oil metagenome

text: Positive control


characteristic: ALT

characteristic: AST

unit: mg/l

characteristic: C-reactive protein

text: Malopolska Centre of Biotechnology

text: public

tag: Namespace:Malopolska Centre of Biotechnology

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA, AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: no

characteristic: allergy

text: not provided

unit: mg

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: no

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

text: no

characteristic: death

text: Human gut metagenome sample

text: no

characteristic: diabetes

text: no

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: hospital

unit: years

characteristic: host age

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

characteristic: host body-mass index

unit: cm

characteristic: host height

text: female

characteristic: host sex

characteristic: host subject id

text: no

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: no

characteristic: other medical conditions

text: yes

characteristic: other medications

text: Gut Microbiome Dynamics and Predictive Value in Hospitalized COVID-19 Patients: A Comparative Analysis of Shallow and Deep Shotgun Sequencing

characteristic: project name

characteristic: sample human DNA contamination

unit: °C

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: control

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: control

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: control

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: not provided

text: control

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: no

text: not provided

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

characteristic: smoking habit duration

text: control

characteristic: subject type

characteristic: title

text: not provided

characteristic: tumour


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: control

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: control

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

text: Poland

text: control

text: stool

text: intestine

characteristic: host subject id

text: not provided

characteristic: hypertension

text: control

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: yes

characteristic: other medical conditions

text: not provided

characteristic: other medications

characteristic: project name

characteristic: sample human DNA contamination

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

text: MiSeq

text: not provided

text: not provided

text: not provided

text: control

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: control

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: control

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

text: not provided

text: feces

text: White

characteristic: ethnicity

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: control

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: not provided

text: control

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: not provided

text: not provided

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

characteristic: smoking habit duration

text: control

characteristic: subject type

characteristic: title

text: not provided

characteristic: tumour


characteristic: ALT

characteristic: AST

characteristic: C-reactive protein

unit: µg/l FEU

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: no

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: 1 week

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: no

characteristic: diabetes

text: no

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

text: Poland

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: male

characteristic: host sex

characteristic: host subject id

text: yes

characteristic: hypertension

text: no

characteristic: icu

unit: pg/ml

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: not provided

characteristic: other medical conditions

text: yes

characteristic: other medications

characteristic: project name

text: human gut metagenome

text: not provided

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

text: White

characteristic: ethnicity

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: male

text: not provided

text: no

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: not provided

text: not provided

characteristic: sample human DNA contamination

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

text: patient (case)

text: not provided


characteristic: ALT

characteristic: AST

characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

unit: U/l

characteristic: LDH (L)

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: no

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: 1 month

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: yes

text: type II diabetes

text: feces

characteristic: environmental medium

text: White

unit: ng/ml

characteristic: ferritin

text: Poland

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: female

characteristic: host sex

characteristic: host subject id

text: yes

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: blood

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: not provided

text: yes

text: human gut metagenome

text: not provided

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: yes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

text: Human gut metagenome sample

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

text: White

characteristic: ethnicity

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: male

text: not provided

text: no

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: not provided

characteristic: other medical conditions

text: not provided

characteristic: other medications

characteristic: project name

characteristic: sample human DNA contamination

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

text: patient (case)

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: male

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: yes

text: not provided

text: human gut metagenome

text: not provided

text: MiSeq

text: not provided

text: not provided

text: not provided

text: patient (case)

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

text: not provided

text: feces

text: White

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: female

text: not provided

text: no

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: yes

characteristic: other medical conditions

text: not provided

characteristic: other medications

characteristic: project name

characteristic: sample human DNA contamination

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

text: patient (case)

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: yes

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: female

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: hypertension

text: yes

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: yes

text: not provided

text: human gut metagenome

text: not provided

text: MiSeq

text: not provided

text: not provided

text: not provided

text: patient (case)

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

text: not provided

text: feces

text: White

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: female

text: not provided

text: no

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: yes

characteristic: other medical conditions

text: not provided

characteristic: other medications

characteristic: project name

characteristic: sample human DNA contamination

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

characteristic: smoking habit duration

text: patient (case)

characteristic: subject type

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: host age

text: stool

text: intestine

text: female

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: not provided

text: not provided

text: human gut metagenome

text: not provided

text: MiSeq

text: not provided

text: not provided

text: not provided

text: patient (case)

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

text: feces

text: White

text: Poland

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: male

text: not provided

text: yes

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: not provided

characteristic: other medical conditions

text: not provided

characteristic: other medications

characteristic: project name

characteristic: sample human DNA contamination

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

characteristic: smoking habit duration

text: patient (case)

characteristic: subject type

characteristic: title

text: not provided


characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: no

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: no

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: no

characteristic: diabetes

text: no

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

characteristic: ferritin

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: female

characteristic: host sex

characteristic: host subject id

text: no

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: not provided

text: yes

text: human gut metagenome

text: not provided

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: no


characteristic: ALT

characteristic: AST

characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: LDH (L)

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: yes

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: no

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: no

characteristic: diabetes

text: no

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: male

text: yes

text: no

text: organism substance

text: blood

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: not provided

characteristic: other medical conditions

text: yes

characteristic: other medications

characteristic: project name

text: human gut metagenome

text: no

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: yes


characteristic: ALT

characteristic: AST

characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: LDH (L)

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: yes

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: no

text: material anatomical entity

text: no

text: Human gut metagenome sample

text: no

text: no

text: feces

text: White

characteristic: ferritin

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: male

characteristic: host sex

characteristic: host subject id

text: yes

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: blood

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: not provided

text: yes

text: human gut metagenome

text: no

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: yes


characteristic: ALT

characteristic: AST

characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: LDH (L)

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: yes

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: no

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: no

characteristic: diabetes

text: no

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: male

text: yes

text: no

text: organism substance

text: blood

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: yes

characteristic: other medical conditions

text: yes

characteristic: other medications

characteristic: project name

text: human gut metagenome

text: no

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: yes


characteristic: ALT

characteristic: AST

characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: no

characteristic: allergy

characteristic: antibiotic dose

text: no

characteristic: antibiotic treatment during hospitalization

text: 1 month

text: material anatomical entity

text: no

text: Human gut metagenome sample

text: no

text: no

text: feces

text: White

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: male

characteristic: host sex

characteristic: host subject id

text: yes

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: yes

text: yes

characteristic: sample human DNA contamination

text: human gut metagenome

text: not provided

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: no


characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: no

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: 6 months

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: no

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: yes

characteristic: diabetes

text: type II diabetes

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

text: CSK

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: male

text: no

text: no

text: organism substance

text: stomach, blood

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: yes

characteristic: other medical conditions

text: yes

characteristic: other medications

characteristic: project name

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: yes


characteristic: ALT

characteristic: AST

characteristic: C-reactive protein

characteristic: D-dimer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: no

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: yes

characteristic: antibiotic treatment during hospitalization

text: 6 months

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

text: no

text: Human gut metagenome sample

text: yes

text: type II diabetes

text: feces

text: White

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CSK

characteristic: host age

text: stool

text: intestine

characteristic: host body-mass index

characteristic: host height

text: male

characteristic: host sex

characteristic: host subject id

text: no

characteristic: hypertension

text: no

characteristic: icu

text: organism substance

characteristic: local environmental context

text: stomach, blood

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: not provided

text: yes

characteristic: sample human DNA contamination

text: human gut metagenome

text: not provided

text: MiSeq

text: no

text: not provided

text: not provided

text: patient (case)

text: yes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: control

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: control

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

text: control

characteristic: hospital

text: stool

characteristic: host body product

text: intestine

characteristic: host body site

text: not provided

text: control

text: organism substance

text: not provided

text: not provided

text: Polish

text: not provided

text: human gut metagenome

characteristic: organism

text: yes

characteristic: other medical conditions

text: not provided

characteristic: other medications

characteristic: project name

characteristic: sample storage temperature

text: human gut metagenome

text: not provided

characteristic: seasonal allergy

text: MiSeq

characteristic: sequencing method

text: not provided

characteristic: smoker

text: not provided

characteristic: smoking frequency

text: not provided

characteristic: smoking habit duration

text: control

characteristic: subject type

characteristic: title

text: not provided

characteristic: tumour


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malopolska Centre of Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: not provided

characteristic: alcohol consumption frequency

text: not provided

characteristic: allergy

text: not provided

characteristic: antibiotic dose

text: control

characteristic: antibiotic treatment during hospitalization

text: not provided

characteristic: antibiotics before hospital

text: material anatomical entity

characteristic: broad-scale environmental context

characteristic: collection date

text: control

characteristic: death

text: Human gut metagenome sample

characteristic: description

text: not provided

characteristic: diabetes

text: not provided

characteristic: diabetes type

text: feces

characteristic: environmental medium

text: White

characteristic: ethnicity

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: control

text: stool

text: intestine

characteristic: host subject id

text: not provided

characteristic: hypertension

text: control

characteristic: icu

text: organism substance

characteristic: local environmental context

text: not provided

characteristic: location of the tumour

text: not provided

characteristic: medications dose

text: Polish

characteristic: nationality

text: not provided

characteristic: number of ciggaretes per day

text: human gut metagenome

text: not provided

text: not provided

characteristic: sample human DNA contamination

text: human gut metagenome

text: not provided

text: MiSeq

text: not provided

text: not provided

text: not provided

text: control

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Netherlands Donor Feces Bank

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Netherlands

text: Homo sapiens

characteristic: host scientific name

text: human feces

text: Escherichia coli

characteristic: organism

text: Escherichia coli


text: PROIMI

text: public

text: terrestrial biome

characteristic: broad-scale environmental context

text: Endophytic organism isolated from soy

text: plant matter

characteristic: environmental medium

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: soy

characteristic: host common name

text: anthropogenic terrestrial biome

characteristic: local environmental context

text: Streptomyces sp. N2A

text: root

characteristic: plant body site

text: Streptomyces spp. as growth promoters

characteristic: project name

text: Streptomyces sp. N2A

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Microbe sample from Streptomyces sp. N2A

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PROIMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: terrestrial biome

text: Endophytic organism isolated from soy

text: plant matter

text: Argentina

text: soy

text: anthropogenic terrestrial biome

text: Streptomyces lydicus

text: root

text: Streptomyces spp. as growth promoters

text: Streptomyces lydicus

text: Illumina NovaSeq 6000

text: Microbe sample from Streptomyces lydicus N9


text: TEAGASC FOOD RESEARCH CENTRE

text: public

tag: Namespace:TEAGASC FOOD RESEARCH CENTRE

characteristic: Submitter Id

text: not provided

characteristic: broad-scale environmental context

text: not provided

characteristic: collection date

text: Metagenomic sequencing reads from kefir fermentations

characteristic: description

text: milk kefir

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: not provided

text: fermentation metagenome

characteristic: organism

text: Cotter Lab global milk kefir metagenomics study

text: fermentation metagenome

text: Kefir metagenomic reads


characteristic: ENA-CHECKLIST

text: Carlsberg Research Laboratory

text: public

text: ena-SAMPLE-TAB-21-08-2023-09:32:04:215-84344

tag: Namespace:Carlsberg Research Laboratory

text: domesticated barley

characteristic: common name

text: Morex from Carlsberg Research Laboratory, replicate 1

text: USA

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Carlsberg Research Laboratory

text: public

text: ena-SAMPLE-TAB-21-08-2023-09:32:04:215-84345

text: domesticated barley

text: Morex from BPGv1 consortium, replicate 1

text: USA

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: Carlsberg Research Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-08-2023-09:32:04:215-84346

text: domesticated barley

text: Morex from Carlsberg Research Laboratory, replicate 2

text: USA

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: Carlsberg Research Laboratory

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-08-2023-09:32:04:215-84347

characteristic: Submitter Id

text: domesticated barley

text: Morex from BPGv1 consortium, replicate 2

text: USA

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

characteristic: collection date

text: Genomic epidemiology of the 2022-2023 cholera outbreak in Lebanon

characteristic: description

text: Lebanon

text: Vibrio cholerae

text: Vibrio cholerae


text: CNRS Universite de Montpellier

text: public

text: ena-SAMPLE-TAB-21-08-2023-12:35:48:396-85330

tag: Namespace:CNRS Universite de Montpellier

text: malaria parasite P. falciparum

text: NanoForkSpeed t29h raw

text: France

characteristic: geographic location (country and/or sea)

text: Plasmodium falciparum

text: Plasmodium falciparum

text: 3D7 - TK+

characteristic: strain

text: NFS t29h


text: CNRS Universite de Montpellier

text: public

text: ena-SAMPLE-TAB-21-08-2023-12:35:48:396-85331

text: malaria parasite P. falciparum

text: NanoForkSpeed t35h raw

text: France

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: 3D7 - TK+

text: NFS t35h


Bp wt_1

characteristic: ENA-CHECKLIST

text: public

text: Bp wt_1

tag: Namespace:Institute of Microbiology of the Czech Academy of Sciences, v.v.i.

text: Czech Republic

text: Bordetella pertussis Tohama I

text: Bordetella pertussis Tohama I

text: Bp wild-type_1


Bp wt_2

text: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.

text: public

text: Bp wt_2

text: Czech Republic

text: Bordetella pertussis Tohama I

text: Bordetella pertussis Tohama I

text: Bp wild-type_2


Bp wt_3

text: public

text: Bp wt_3

text: Czech Republic

text: Bordetella pertussis Tohama I

text: Bordetella pertussis Tohama I

text: Bp wild-type_3


Bp BP2265_mut_1

text: public

text: Bp BP2265_mut_1

text: Czech Republic

text: Bordetella pertussis Tohama I

text: Bordetella pertussis Tohama I

text: Bp BP2265 deletion mutant_1


Bp BP2265_mut_2

text: public

text: Bp BP2265_mut_2

text: Czech Republic

text: Bordetella pertussis Tohama I

text: Bordetella pertussis Tohama I

text: Bp BP2265 deletion mutant_2


Bp BP2265_mut_3

text: public

text: Bp BP2265_mut_3

text: Czech Republic

text: Bordetella pertussis Tohama I

text: Bordetella pertussis Tohama I

text: Bp BP2265 deletion mutant_3


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: not provided

text: malaria parasite P. falciparum

characteristic: common name

text: not provided

text: Plasmodium falciparum

text: Plasmodium falciparum


E-MTAB-13272:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: UNISA

text: public

text: E-MTAB-13272:Sample 1

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: Six strains of A. baumannii were studied. In detail, five field strains were isolated from blood samples (defined as strains 1, 2, 3, 4 and 6) of patients hospitalized at the University Hospital \"San Giovanni di Dio e Ruggi d'Aragona\" (Salerno, Italy). DNAs were extracted from bacterial cultures using the QIAGEN® Genomic DNA Handbook (QIAGEN, Hilden, Germany) Libraries were prepared starting from 600 ng of gDNA, using the rapid sequencing gDNA-barcoding kit (SQK-RBK004) according to the manufacturer's protocol

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

characteristic: organism part

text: Acinetobacter baumannii

text: Sample 1

characteristic: title


E-MTAB-13272:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNISA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13272:Sample 2

text: ArrayExpress

text: not collected

text: wild type genotype

text: not collected

text: not applicable

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

text: Sample 2


E-MTAB-13272:Sample 3

text: UNISA

text: public

characteristic: SRA accession

text: E-MTAB-13272:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

characteristic: strain

text: Sample 3


E-MTAB-13272:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNISA

text: public

text: E-MTAB-13272:Sample 4

text: ArrayExpress

characteristic: broker name

text: not collected

text: wild type genotype

text: not collected

text: not applicable

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

text: Sample 4


E-MTAB-13272:Sample 5

text: UNISA

text: public

text: E-MTAB-13272:Sample 5

text: ArrayExpress

text: not collected

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

characteristic: organism part

text: Acinetobacter baumannii

text: Sample 5

characteristic: title


E-MTAB-13272:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNISA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13272:Sample 6

text: ArrayExpress

text: not collected

text: wild type genotype

text: not collected

text: not applicable

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

text: Sample 6


E-MTAB-13274:Sample 1

text: UNISA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13274:Sample 1

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: Protocols: Six strains of A. baumannii were studied. In detail, five field strains were isolated from blood samples (defined as strains 1, 2, 3, 4 and 6) of patients hospitalized at the University Hospital \"San Giovanni di Dio e Ruggi d'Aragona\" (Salerno, Italy). Total RNA was extracted from bacterial cultures using TRIzol, according to the manufacturer's instructions. Quantification and quality control of the extracted RNAs were carried out using NanoDrop and Bioanalyzer. For RNA sequencing, libraries were prepared using 1 ?g of extracted RNA and the Illumina Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit (Illumina, Inc., San Diego, CA, USA). The libraries were sequenced paired-end, 2x75 cycles on NextSeq500 platform at a concentration of 1.3 pM.

text: not collected

text: not applicable

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

text: Sample 1


E-MTAB-13274:Sample 2

text: UNISA

text: public

text: E-MTAB-13274:Sample 2

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

characteristic: strain

text: Sample 2


E-MTAB-13274:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNISA

text: public

text: E-MTAB-13274:Sample 3

text: ArrayExpress

characteristic: broker name

text: not collected

text: not collected

text: not applicable

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

text: Sample 3


E-MTAB-13274:Sample 4

text: UNISA

text: public

text: E-MTAB-13274:Sample 4

text: ArrayExpress

text: not collected

text: not collected

text: not applicable

characteristic: isolate

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

characteristic: organism part

text: Acinetobacter baumannii

text: Sample 4

characteristic: title


E-MTAB-13274:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNISA

characteristic: INSDC center name

text: public

text: E-MTAB-13274:Sample 5

text: ArrayExpress

text: not collected

text: not collected

text: not applicable

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

text: Sample 5


E-MTAB-13274:Sample 6

text: UNISA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13274:Sample 6

text: ArrayExpress

text: not collected

text: not collected

text: not applicable

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: whole organism

text: Acinetobacter baumannii

text: Sample 6


characteristic: Center Name

text: public

characteristic: SRA accession

tag: Namespace:WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

characteristic: Submitter Id

characteristic: collection date

text: RNA-Sequencing data from BTK2_PEF_etoh_m1_d5_FECAL_RNA

text: PEF

characteristic: diet

characteristic: dpg

text: USA

text: A

characteristic: isolator

text: mouse gut metagenome

text: mouse gut metagenome

text: etoh

characteristic: treatment


text: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: RNA-Sequencing data from BTK2_PEF_etoh_m10.2_d5_FECAL_RNA

characteristic: description

text: PEF

text: USA

characteristic: geographic location (country and/or sea)

text: A

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: etoh


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: RNA-Sequencing data from BTK2_PEF_etoh_m12_d5_FECAL_RNA

text: PEF

text: USA

text: A

text: mouse gut metagenome

text: mouse gut metagenome

characteristic: title

text: etoh


characteristic: Center Name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RNA-Sequencing data from BTK2_PEF_etoh_m3_d5_FECAL_RNA

text: PEF

text: USA

text: A

text: mouse gut metagenome

text: mouse gut metagenome

text: etoh


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: RNA-Sequencing data from BTK2_PEF_atc_m11.2_d5_FECAL_RNA

text: PEF

characteristic: diet

text: USA

text: C

text: mouse gut metagenome

text: mouse gut metagenome

text: atc


characteristic: ENA-CHECKLIST

text: public

text: RNA-Sequencing data from BTK2_PEF_atc_m12.2_d5_FECAL_RNA

text: PEF

characteristic: dpg

text: USA

text: C

characteristic: isolator

text: mouse gut metagenome

text: mouse gut metagenome

text: atc

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

text: public

text: RNA-Sequencing data from BTK2_PEF_atc_m13.2_d5_FECAL_RNA

characteristic: description

text: PEF

text: USA

characteristic: geographic location (country and/or sea)

text: C

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: atc


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: RNA-Sequencing data from BTK2_PEF_atc_m14.2_d5_FECAL_RNA

text: PEF

text: USA

text: C

text: mouse gut metagenome

text: mouse gut metagenome

characteristic: title

text: atc


characteristic: Center Name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RNA-Sequencing data from BTK2_PEF_atc_m15.2_d5_FECAL_RNA

text: PEF

text: USA

text: C

text: mouse gut metagenome

text: mouse gut metagenome

text: atc


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: RNA-Sequencing data from BTK2_PEF_atc_m16.2_d5_FECAL_RNA

text: PEF

characteristic: diet

text: USA

text: C

text: mouse gut metagenome

text: mouse gut metagenome

text: atc


characteristic: ENA-CHECKLIST

text: public

text: BTK2_PEF_BT-T1_etoh_m1_d1_fecal_COPROSEQ

text: COPRO-SEQ data from BTK2_PEF_BT-T1_etoh_m1_d1

text: PEF

characteristic: dpg

text: USA

text: A

characteristic: isolator

text: mouse gut metagenome

text: mouse gut metagenome

text: etoh

characteristic: treatment

text: fecal

characteristic: type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: BTK2_PEF_BT-T1_etoh_m3_d1_fecal_COPROSEQ

text: COPRO-SEQ data from BTK2_PEF_BT-T1_etoh_m3_d1

characteristic: description

text: PEF

text: USA

characteristic: geographic location (country and/or sea)

text: A

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: etoh

text: fecal


characteristic: Center Name

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BTK2_PEF_BT-T1_etoh_m8.2_d1_fecal_COPROSEQ

text: COPRO-SEQ data from BTK2_PEF_BT-T1_etoh_m8.2_d1

text: PEF

text: USA

text: A

text: mouse gut metagenome

text: mouse gut metagenome

characteristic: title

text: etoh

text: fecal


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BTK2_PEF_BT-T1_etoh_m10.2_d1_fecal_COPROSEQ

characteristic: Submitter Id

characteristic: collection date

text: COPRO-SEQ data from BTK2_PEF_BT-T1_etoh_m10.2_d1

text: PEF

text: USA

text: A

text: mouse gut metagenome

text: mouse gut metagenome

text: etoh

text: fecal


text: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

characteristic: ENA-CHECKLIST

text: public

text: BTK2_PEF_BT-T1_etoh_m12_d1_fecal_COPROSEQ

text: COPRO-SEQ data from BTK2_PEF_BT-T1_etoh_m12_d1

text: PEF

characteristic: diet

characteristic: dpg

text: USA

text: A

characteristic: isolator

text: mouse gut metagenome

text: mouse gut metagenome

text: etoh

characteristic: treatment

text: fecal


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: WT

text: COPRO-SEQ data from BTK2_PEF_WT_etoh_m6_d1

characteristic: description

text: PEF

text: USA

characteristic: geographic location (country and/or sea)

text: B

text: mouse gut metagenome

text: mouse gut metagenome

text: etoh

text: fecal

characteristic: type


characteristic: Center Name

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: WT

text: COPRO-SEQ data from BTK2_PEF_WT_etoh_m13_d1

text: PEF

text: USA

text: B

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: etoh

text: fecal


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: WT

text: COPRO-SEQ data from BTK2_PEF_WT_etoh_m14_d1

text: PEF

text: USA

text: B

text: mouse gut metagenome

text: mouse gut metagenome

characteristic: title

text: etoh

text: fecal


characteristic: ENA-CHECKLIST

text: public

text: WT

characteristic: collection date

text: COPRO-SEQ data from BTK2_PEF_WT_etoh_m15_d1

text: PEF

characteristic: diet

characteristic: dpg

text: USA

text: B

characteristic: isolator

text: mouse gut metagenome

text: mouse gut metagenome

text: etoh

text: fecal


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: BTK2_PEF_BT-T1_atc_m11.2_d1_fecal_COPROSEQ

text: COPRO-SEQ data from BTK2_PEF_BT-T1_atc_m11.2_d1

characteristic: description

text: PEF

text: USA

characteristic: geographic location (country and/or sea)

text: C

text: mouse gut metagenome

text: mouse gut metagenome

text: atc

characteristic: treatment

text: fecal


characteristic: Center Name

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BTK2_PEF_BT-T1_atc_m12.2_d1_fecal_COPROSEQ

text: COPRO-SEQ data from BTK2_PEF_BT-T1_atc_m12.2_d1

text: PEF

text: USA

text: C

text: mouse gut metagenome

text: mouse gut metagenome

text: atc

text: fecal

characteristic: type


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BTK2_PEF_BT-T1_atc_m13.2_d1_fecal_COPROSEQ

characteristic: Submitter Id

text: COPRO-SEQ data from BTK2_PEF_BT-T1_atc_m13.2_d1

text: PEF

text: USA

text: C

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: atc

text: fecal