characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Swedish museum of Natural HIstory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Swedish museum of Natural HIstory

characteristic: Submitter Id

text: Eurasian elk

characteristic: common name

text: Modern

characteristic: description

text: Alces alces

text: Alces alces

text: European moose


status: PUBLIC

tag: attribute

text: Swedish museum of Natural HIstory

text: public

text: Eurasian elk

text: Historical

text: Alces alces

characteristic: organism

text: Alces alces

text: European moose

characteristic: title


text: Bile duct

characteristic: ArrayExpress-PHENOTYPE

text: unknown

characteristic: ArrayExpress-SEX

text: Felis catus

characteristic: ArrayExpress-SPECIES

text: Unknown

characteristic: GENDER

text: SC

text: public

text: Bile duct

characteristic: PHENOTYPE

text: domestic cat

text: Felis catus

text: Felis catus


text: Heart

text: unknown

text: Felis catus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Unknown

text: SC

text: public

text: Heart

text: domestic cat

text: Felis catus

text: Felis catus


text: Liver

text: unknown

text: Felis catus

characteristic: External Id

text: Unknown

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Liver

text: domestic cat

text: Felis catus

text: Felis catus


text: Small intestine

text: unknown

text: Felis catus

text: Unknown

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Small intestine

characteristic: SRA accession

text: domestic cat

text: Felis catus

text: Felis catus


text: Adrenal gland

text: unknown

text: Felis catus

text: Unknown

text: SC

text: public

text: Adrenal gland

characteristic: Submitter Id

text: domestic cat

characteristic: common name

text: Felis catus

text: Felis catus


text: Brain

text: unknown

text: Felis catus

text: Unknown

text: SC

text: public

text: Brain

text: domestic cat

text: Felis catus

characteristic: organism

text: Felis catus

characteristic: title


text: Kidney

characteristic: ArrayExpress-PHENOTYPE

text: unknown

characteristic: ArrayExpress-SEX

text: Felis catus

text: Unknown

text: SC

text: public

text: Kidney

text: domestic cat

text: Felis catus

text: Felis catus


text: Lymph node

text: unknown

text: Felis catus

characteristic: ArrayExpress-SPECIES

text: Unknown

characteristic: GENDER

text: SC

text: public

text: Lymph node

text: domestic cat

text: Felis catus

text: Felis catus


characteristic: ENA-CHECKLIST

text: SIB

text: public

text: strong inhibition of Phytophtora infestans

characteristic: description

text: Sudan

characteristic: geographic location (country and/or sea)

text: Khartoum State, Khartoum

characteristic: geographic location (region and locality)

text: River sediments

text: Streptomyces sp. SudanB5_2050

text: Streptomyces sp. SudanB5_2050

text: Streptomyces sp. SudanB5_2050


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB

characteristic: INSDC center name

text: public

text: Sudan

text: Red Sea State, Port Sudan

text: Rhizosphere of Avicenna marina

text: Streptomyces sp. SudanB25_2051

text: Streptomyces sp. SudanB25_2051

text: Streptomyces sp. SudanB25_2051


text: SIB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: medium inhibition of Phytophtora infestans

text: Sudan

text: Northern State, Dongola

text: Rhizosphere of Corchorus olitorius

text: Streptomyces sp. SudanB52_2052

text: Streptomyces sp. SudanB52_2052

text: Streptomyces sp. SudanB52_2052


text: SIB

text: public

characteristic: Submitter Id

text: Sudan

text: Khartoum State, Khartoum North

text: bulk soil

text: Streptomyces sp. SudanB66_2053

characteristic: organism

text: Streptomyces sp. SudanB66_2053

text: Streptomyces sp. SudanB66_2053

characteristic: title


text: SIB

text: public

text: weak inhibition of Phytophtora infestans

text: Sudan

text: Red Sea State, Erkowit

text: Rhizosphere of Citrullus colocynthis

text: Streptomyces sp. SudanB91_2054

text: Streptomyces sp. SudanB91_2054

text: Streptomyces sp. SudanB91_2054


text: SIB

text: public

text: Sudan

text: Gezira State, Al Bageir

text: Rhizosphere of Azadirachta indica

text: Streptomyces sp. SudanB135_2055

text: Streptomyces sp. SudanB135_2055

text: Streptomyces sp. SudanB135_2055


text: SIB

text: public

text: Sudan

text: Gezira State, Al Bageir

text: Rhizosphere of Balanites aegyptiaca

text: Streptomyces sp. SudanB148_2056

text: Streptomyces sp. SudanB148_2056

text: Streptomyces sp. SudanB148_2056


text: SIB

text: public

text: Sudan

text: Sennar State, Er Roseires

text: Rhizosphere of Acacia oerfota

text: Streptomyces sp. SudanB182_2057

text: Streptomyces sp. SudanB182_2057

text: Streptomyces sp. SudanB182_2057


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Plasmodium falciparum

text: Plasmodium falciparum RO-33

text: Plasmodium falciparum RO-33

text: Plasmodium falciparum


text: Plasmodium falciparum

text: SC

text: public

text: Plasmodium falciparum

text: Plasmodium falciparum CAMP/Malaysia

text: Plasmodium falciparum CAMP/Malaysia

text: Plasmodium falciparum


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


PK15 ATCC

text: public

text: PK15 ATCC

tag: Namespace:Swedish University of Agricultural Sciences

text: PK15 cell line

text: pig

text: ATCC isolate of PK15 cell line

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: PK15 ATCC


PK15 U.Lab

text: Swedish University of Agricultural Sciences

text: public

text: PK15 U.Lab

text: PK15 cell line

text: pig

text: University lab isolate of PK15 cell line

text: Sus scrofa

text: Sus scrofa

text: PK15 U.Lab


fibroblast

text: public

text: fibroblast

text: Porcine embryonic fibroblast

text: Porcine embryonic fibroblast

text: pig

text: Porcine embryonic fibroblast

text: Sus scrofa

text: Sus scrofa

text: fibroblast


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55281

tag: Namespace:SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55282

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55283

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55284

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55285

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55286

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55287

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55288

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55289

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55290

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55291

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55292

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:566-55293

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55294

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55295

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55296

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55297

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55298

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55299

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55300

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55301

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55302

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55303

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55304

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55305

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55306

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55307

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55308

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:567-55309

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55310

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55311

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Maastricht University, Maastricht, The Netherlands

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Nthy-ori 3-1

text: thyroid follicular cell

text: human

characteristic: common name

text: Protocols: The human epithelial thyroid cell line Nthy-ori 3-1 was plated at a density of 10,000 cells/cm2 on 6-well plates and cultured in RPMI 1640 Medium with GlutaMAX™ Supplement (61870036, Gibco), 10% FBS and Penicillin-Streptomycin (15140122, Gibco) and incubated at 37 ºC, 5% pCO2 and >95% humidity. Cells were left one day to adhere, and the following day the media was changed to culture media with DEHP (n=6) or DINP (n=6) at 1 uM in 0.5% DMSO. As solvent control, the culture media was additioned with just 0.5% DMSO (n=6). Cells were incubated for 5 days refreshing the media with the compound or DMSO only at day 3. At the end of the incubation period, cells were collected and counted manually. 50,000 cells per sample were used to prepare ATAC-Seq libraries. Libraries were prepared following the Omni-Atac protocol of Corces et al. 2017 [45] with the replacement of NP40 from the original protocol with IGEPAL (Merck, I8896-50ml). The tagmentase kit used was Illumina Tagment DNA Enzyme and Buffer Small Kit (Illumina, 20034197) and the indexes IDT® for Illumina® DNA/RNA UD Indexes Set A, Tagmentation (96 Indexes, 96 samples) (Illumina, 20027213). Seven PCR cycles were used for all samples. ATAC-Seq libraries were quantified on a Qubit 2.0 Fluorometer (ThermoFisher) and quality control checked on the 2200 TapeStation System (Agilent) or BioAnalyzer 2100 expert (Agilent).

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: human thyroid cell culture

characteristic: growth condition

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

characteristic: organism part

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Maastricht University, Maastricht, The Netherlands

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Nthy-ori 3-1

text: thyroid follicular cell

text: human

text: adult

text: normal

text: wild type genotype

text: human thyroid cell culture

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: thyroid gland

text: Homo sapiens

text: female


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55312

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55313

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2


characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mouse recombinant embryonic stem cell line

text: thyroid follicular cell

text: house mouse

characteristic: common name

text: Protocols: Embryonic stem cells culture and differentiation: Thyroid follicles were differentiated from the A2Lox.Cre_TRE-Nkx2-1/Pax8_Tg-EGFP mouse ESC as previously described [1, 2]. Briefly, cells were initially cultured on gamma-irradiated mouse embryonic fibroblasts (MEFs) feeder using mouse stem cell medium [1, 2] and incubated at 37 °C, 5% pCO2 and >95% humidity. For differentiation into thyroid, embryoid bodies (EBs) were generated by hanging drops culture of ESCs (1000 cells per drop) for 4 days. They were then collected and embedded in growth factor restricted Matrigel (354230, Corning). 50 uL matrigel drops containing around 20 EBs were plated into 12-well plates. Cells were differentiated using a differentiation medium composed of DMEM (31966021, Gibco) supplemented with 15% FBS, vitamin C (50 ug mL-1) (A4544, Sigma), nonessential amino acids (0.1 mM) (11140035, Gibco), sodium pyruvate (1 mM) (11360039, Gibco), penicillin and streptomycin (50 U mL-1) (15140122, Gibco), 2-mercaptoethanol (0.1 mM) (31350010, Gibco). The differentiation medium was supplemented with 1 μg mL-1 of doxycycline (D9891-1G, Sigma) for 3 days for Nkx2-1 and Pax8 induction, followed by two weeks of maturation by using the differentiation medium containing 8-Br-cAMP (0.3 nM) (B 007-500, BioLog). Follicles enrichment protocol At day 21, after complete thyroid maturation, matrigel drops containing the thyroid follicles were washed twice with Hanks’s balanced salt solution (HBSS, containing calcium and magnesium) (14025050, Gibco) and incubated in a HBSS solution (1 mL per well) containing 10 U mL-1 of dispase® II (4942078001, Roche) and 125 U mL-1 of collagenase type IV (Sigma) for 30-45 min at 37 °C. The enzymes were then inactivated by adding 10% FBS. Organoids were centrifuged at 1200 rpm for 3 minutes. After rinsing twice with HBSS, the follicles were enriched by filtration using 30 um (to remove single cells) (43-50030, pluriSelect Life Science GmbH) to and 100 um reverse strainer (to remove big follicles aggregates) (43-50100, pluriSelect Life Science GmbH). Resuspended follicles were cultured in subsequent experiments in the differentiation medium described above and supplemented with 8-Br-cAMP (10 µM) and TGF-βRI inhibitor SB431542 (10 µM) (1614, Tocris). [1] Antonica, F., et al., Generation of functional thyroid from embryonic stem cells. Nature, 2012. 491(7422): p. 66-71. [2] Romitti, M., et al., Single-Cell Trajectory Inference Guided Enhancement of Thyroid Maturation In Vitro Using TGF-Beta Inhibition. Frontiers in Endocrinology, 2021. 12. Enriched thyroid follicles were exposed to DEHP (CAS 117-81-7) /DIDP (CAS 26761-40-0)/DINP (CAS 28553-12-0) (1-10-100 nM-1-10 uM), DnOP (CAS 117-84-0) (2-20-200 nM-2-20 uM) (n = 3), 0.5% DMSO (n = 5) or only culture media (n = 2) for 24 hours. The culture media was DMEM (31966021, Gibco) supplemented with 15% FBS, vitamin C (50 μg mL-1) (A4544, Sigma), nonessential amino acids (0.1 mM) (11140035, Gibco), sodium pyruvate (1 mM) (11360039, Gibco), penicillin and streptomycin (50 U mL-1) (15140122, Gibco), 2-mercaptoethanol (0.1 mM) (31350010, Gibco), 8-Br-cAMP (10 µM) and TGF-βRI inhibitor SB431542 (10 µM) (1614, Tocris). At the end of the exposure time, cells were collected in 1.5 mL Eppendorf tubes and washed once with PBS. They were then lysed in QIAzol Lysis Reagent (79306, Qiagen). Total RNA was extracted using the miRNAeasy Micro Kit (217084, Qiagen). 20 ng of total RNA isolated from thyroid organoids samples were used as input for the NEXTFLEX® Combo-Seq™ mRNA/miRNA Kit (NOVA-5139-53, PerkinElmer). All RIN (RNA Integrity Number) values were 8 or higher. To deplete tRNA fragments and Y RNA fragments during the library preparation, the NEXTFLEX® tRNA/YRNA Blocker was used following the manufacturer’s instruction. We performed 14 or 16 PCR cycles were performed during library preparation (see samplesheet). RNA-Seq libraries were quantified on a Qubit 2.0 Fluorometer (ThermoFisher) and quality control checked on the 2200 TapeStation System (Agilent) or BioAnalyzer 2100 expert (Agilent).

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: mouse thyroid organoid culture

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: thyroid gland

characteristic: organism part

text: mouse embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55314

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55315

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55316

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55317

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55318

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55319

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55320

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55321

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55322

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55323

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55324

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:568-55325

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55326

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55327

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55328

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55329

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55330

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55331

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55332

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55333

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55334

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55335

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55336

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55337

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55338

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55339

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55340

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:569-55341

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55342

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55343

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55344

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55345

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55346

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55347

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55348

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55349

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55350

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55351

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55352

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55353

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55354

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55355

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55356

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55357

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:570-55358

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55359

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55360

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55361

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55362

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55363

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55364

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55365

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55366

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55367

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55368

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55369

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55370

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55371

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55372

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55373

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:571-55374

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55375

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55376

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55377

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55378

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55379

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55380

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55381

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55382

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55383

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55384

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55385

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55386

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55387

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55388

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55389

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:572-55390

characteristic: Submitter Id

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55391

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55392

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55393

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55394

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55395

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55396

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55397

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55398

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55399

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55400

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55401

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55402

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55403

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55404

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55405

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:573-55406

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55407

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55408

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55409

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55410

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55411

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55412

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55413

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55414

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55415

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55416

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55417

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55418

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55419

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55420

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55421

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55422

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:574-55423

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55424

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55425

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55426

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55427

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55428

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55429

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55430

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55431

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55432

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55433

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55434

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55435

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55436

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55437

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:575-55438

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: title


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55439

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55440

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Fraunhofer Institute for Molecular Biology and Applied Ecology IME

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: Three (3) emerged female imagines were randomly selected and carefully transferred to a 1.5 ml Eppendorf tube for each sample. After collecting individuals for all samples, they were all euthanized at the same time by immersing the tubes in liquid nitrogen. Thereafter, 350 L of RP1 lysis buffer (NucleoSpin RNA Protein kit; Macherey-Nagel 740933.250) was added to the tube to homogenize the tissue. Prior to extraction, RP1 buffer was freshly prepared with TCEP as a reducing agent. Please see the \"Growth protocol\" for more information on incubation conditions and adult broodstock husbandry. Please see the \"Treatment protocol\" for more information on exposure duration and conditions. Cloeon dipterum is a mayfly species found in central Europe that belongs to the Baetidae (Ephemeroptera) family. Unlike the majority of mayfly larvae, C. dipterum larvae prefer lentic habitats such as small ponds, lake littorals, or slow parts of running waters. The larvae are grazers that live in macrophytes or sediment and feed on periphyton and detritus. C. dipterum has a bivoltine life cycle, with a fast-developing summer generation and a slow-developing winter generation. Fipronil (CAS:120068-37-3, PESTANAL© analytical grade) was purchased from Merck KGgA (Darmstadt, Germany). To prepare the test solution, a high concentrated stock solution in Acetone (99.9% MS grade) was first prepared. This stock solution for the highest test solution was further diluted with acetone to prepare the acetonic stock solutions for the lower test solutions. 1.00 mL of the corresponding acetonic stock solution was transferred and distributed along the glass wall of an empty glass bottle while the bottle was slowly turned. The acetone was evaporated by blowing compressed air into the bottle. The glass bottles were then filled with 2.00 L Elendt M4 medium each. The test solutions were treated with ultrasonication (30 minutes) and stirred for 60 minutes at ambient temperature before application in the test. Two chronic toxicity tests were performed per week, with a semi-static test design and two media renewals. The tests used small larvae in the L3 stage, based on Cianciara's (1976) description of wing pad development. There were at least four replicates per test concentration and control, with five individuals per replicate. The test solutions and food were changed twice a week. The tests were carried out at a temperature of 20 °C (±1 °C), with illumination of 1 E m2s 1 and a light and dark rhythm of 16:8 h. The physico-chemical parameters pH, oxygen concentration, and oxygen saturation were determined using the multiparameter device WTW Multi 1970i at the start of the test, during each media renewal, and at the end of the test. The temperature was continuously measured, and the lighting was determined once a week. C. dipterum larvae were exposed to Fipronil at nominal concentrations ranging from 0.038 to 0.60 g/L in the long-term exposure experiment. This experiment lasted 38 days, or until all of the larvae emerged. To prevent emerged imagines from escaping, the test vessels were covered with loose nets during this experiment. Once the subimagines had molted, the sex of the imagines was determined using male mayfly characteristics such as copulation tongs and turban eyes. Following that, the emerging female images were sampled for transcriptome analysis. For this, a maximum of three individuals per replicate was transferred to an Eppendorff tube containing 350 µL lysis buffer. The pooled female images in RP1 buffer were transferred to a screw-cap eppendorf tube containing 0.3 g of Lysing Matrix D ceramic beads (MP Biomedicals, 6913050). FastPrep-24 (MP Biomedicals, 6004500) was used to homogenize tissue at 5 m/s for 45 seconds at room temperature. Total RNA was extracted from the tissue lysate using the NucleoSpin RNA Protein kit (Macherey-Nagel, 740933.250) as directed by the manufacturer. A Nanodrop 2000 spectrophotometer was used to measure the concentration of RNA (>100 ng/l) (Thermo Scientific). The overall RNA quality and corresponding RIN value of the sample were determined fluorometrically using an Agilent 2100 Bioanalyzer Instrument system (Agilent, G2939BA) and the Agilent RNA 6000 Nano Kit (Agilent, 5067-1511) according to the manufacturer's protocol. Only samples with a RIN > 8 were used for downstream analysis. Samples were stored at -80°C until they were sent to the sequencing facility on dry ice. At the Eurofins Genomics GmbH sequencing facility in Germany, sequencing libraries were created from 100 ng/l total RNA for each sample. Strand-specific cDNA libraries were created using their standard workflow from protein coding mRNA molecules purified using PolyA selection.

characteristic: description

text: larval stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 3 larvae

characteristic: individual

text: not applicable

text: Cloeon dipterum

text: Cloeon dipterum

text: whole organism

characteristic: organism part

text: Cloeon dipterum

text: mixed

characteristic: sex


characteristic: ENA-CHECKLIST

text: Fraunhofer Institute for Molecular Biology and Applied Ecology IME

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: larval stage

text: wild type genotype

text: mixed pool of 3 larvae

text: not applicable

characteristic: isolate

text: Cloeon dipterum

text: Cloeon dipterum

text: whole organism

text: Cloeon dipterum

text: mixed

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55441

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55442

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55443

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55444

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55445

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55446

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55447

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55448

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55449

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55450

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55451

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55452

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55453

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:576-55454

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55455

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55456

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55457

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55458

characteristic: Submitter Id

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55459

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: title


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55460

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55461

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism

characteristic: virus identifier


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55462

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55463

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55464

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id


characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55465

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55466

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55467

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55468

text: Wellcome Sanger Institute, The UK Lighthouse Labs Network, The COVID-19 Genomics UK Consortium

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55469

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:577-55470

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55471

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55472

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55473

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55474

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id


characteristic: ENA-LAST-UPDATE

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55475

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55476

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism

characteristic: virus identifier


text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55477

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: isolate


characteristic: ENA-CHECKLIST

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55478

text: The COVID-19 Genomics UK Consortium

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host common name

text: not collected

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55479

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: title


characteristic: External Id

text: SHEFFIELD MEDICAL SCHOOL. UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-21-11-2021-19:53:56:578-55480

characteristic: Submitter Id

characteristic: collecting institution

text: The COVID-19 Genomics UK Consortium

text: United Kingdom

text: Homo sapiens

text: not collected

text: Homo sapiens

characteristic: organism

characteristic: virus identifier