characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: MOUSE

text: Puerto Rico

characteristic: country

text: RUNNING

characteristic: description

text: TRUE

text: 6 WEEK

characteristic: duration

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: Puerto Rico:San Juan

text: Puerto Rico

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

characteristic: organism

text: UPR

text: FALSE

text: feces

text: feces

text: mouse gut metagenome

characteristic: title

characteristic: year


status: PUBLIC

tag: attribute

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: MOUSE

text: Puerto Rico

text: RUNNING

text: TRUE

text: 6 WEEK

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: animal-associated habitat

text: feces

text: host-associated

text: Puerto Rico:San Juan

text: Puerto Rico

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: UPR

text: FALSE

text: feces

text: feces

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: MOUSE

text: Puerto Rico

text: SEDENTARY

text: TRUE

text: 6 WEEK

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: animal-associated habitat

text: feces

text: host-associated

text: Puerto Rico:San Juan

text: Puerto Rico

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: UPR

text: FALSE

text: feces

text: feces

text: mouse gut metagenome


characteristic: External Id

text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


text: Washington University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Washington University

text: house mouse

characteristic: common name

text: Colonic contents (pooled litter)

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Neonatal 16S rRNA Sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Washington University

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: Colonic contents

text: USA

text: Mus musculus

text: Mus musculus

text: Adult 16S rRNA Sequencing


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: restricted access

text: Streptococcus pneumoniae

text: restricted access

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: barcoding center

text: COPO

characteristic: broker name

text: MARKUS RUHSAM | ANDY GRIFFITHS

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

text: United Kingdom

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Roslin Glen

characteristic: geographic location (region and locality)

text: in semi natural woodland

characteristic: habitat

text: MARKUS RUHSAM | ANDY GRIFFITHS

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Hyacinthoides non-scripta

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: flowers put into FluidX tubes

characteristic: sample collection device or method

text: Hyacinthoides non-scripta

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: 3b58bb91-6eeb-4f67-ba1c-3892ece79708-DTOL-specimen

characteristic: tolid

characteristic: voucher institution url

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ROYAL BOTANIC GARDEN EDINBURGH

text: COPO

text: MARKUS RUHSAM | ANDY GRIFFITHS

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland | Roslin Glen

text: in semi natural woodland

text: MARKUS RUHSAM | ANDY GRIFFITHS

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Hyacinthoides non-scripta

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: flowers put into FluidX tubes

text: Hyacinthoides non-scripta

text: HERMAPHRODITE MONOECIOUS

text: 03c89ddc-e9d2-4e7d-959b-d27648dd9a4d-DTOL-specimen

characteristic: title


characteristic: INSDC center name

text: public

tag: Namespace:Public Health Authority of the Slovak Republic

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

unit: years

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: unknown

characteristic: host subject id

text: unknown

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Authority of the Slovak Republic

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

text: unknown

text: unknown

text: RNA

text: Nasopharyngeal swab


characteristic: INSDC center name

text: public

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: unknown

text: unknown

text: RNA

text: Nasopharyngeal swab

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Martin-Luther-University Halle-Wittenberg

characteristic: INSDC first public

text: public

characteristic: air temperature regimen

text: thale cress

characteristic: culture rooting medium

text: Arabidopsis thaliana Col-0 replicate 1 used for illumina RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: grown for 7 days under continuous light conditions at 22�C

characteristic: isolation and growth condition

characteristic: light regimen

characteristic: mineral nutrient regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001023

characteristic: plant growth medium

text: whole organism

characteristic: plant structure

characteristic: plant treatment

text: dipolid

characteristic: ploidy

characteristic: propagation

characteristic: rooting conditions

characteristic: rooting medium carbon

characteristic: rooting medium macronutrients

characteristic: rooting medium micronutrients

characteristic: rooting medium organic supplements

characteristic: rooting medium pH

characteristic: rooting medium regulators

characteristic: rooting medium solidifier

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

characteristic: soil_taxonomic/FAO classification

characteristic: source material identifiers

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana Col-0 replicate 1 for short read RNA sequencing

characteristic: title

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana Col-0 replicate 2 used for illumina RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001024

characteristic: plant growth medium

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: Arabidopsis thaliana Col-0 replicate 2 for short read RNA sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana Col-0 replicate 3 used for illumina RNA sequencing

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001025

text: whole organism

text: dipolid

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana Col-0 replicate 3 for short read RNA sequencing

characteristic: title


text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 1 used for illumina RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001026

characteristic: plant growth medium

text: whole organism

characteristic: plant structure

text: dipolid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 1 for short read RNA sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 2 used for illumina RNA sequencing

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001027

text: whole organism

text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 2 for short read RNA sequencing


text: Martin-Luther-University Halle-Wittenberg

text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 3 used for illumina RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001028

characteristic: plant growth medium

text: whole organism

text: dipolid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 3 for short read RNA sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 1 used for illumina RNA sequencing

text: Germany

text: growth chamber

text: grown for 7 days under continuous light conditions at 22�C

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001029

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

characteristic: subspecific genetic lineage name

text: ecotype

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 1 for short read RNA sequencing


text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 2 used for illumina RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001030

characteristic: plant growth medium

text: whole organism

text: dipolid

text: healthy

text: Arabidopsis thaliana

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 2 for short read RNA sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 3 used for illumina RNA sequencing

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001031

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

text: ecotype

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 3 for short read RNA sequencing

characteristic: title


text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana Col-0 replicate 1 used for nanopore direct RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001032

characteristic: plant growth medium

text: whole organism

text: dipolid

text: healthy

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

text: Arabidopsis thaliana Col-0 replicate 1 for long read direct RNA sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Martin-Luther-University Halle-Wittenberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana Col-0 replicate 2 used for nanopore direct RNA sequencing

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001033

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana Col-0 replicate 2 for long read direct RNA sequencing


text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana Col-0 replicate 3 used for nanopore direct RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001034

characteristic: plant growth medium

text: whole organism

text: dipolid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: Arabidopsis thaliana Col-0 replicate 3 for long read direct RNA sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 1 used for nanopore direct RNA sequencing

text: Germany

text: growth chamber

text: grown for 7 days under continuous light conditions at 22�C

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001035

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

characteristic: subspecific genetic lineage name

text: ecotype

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 1 for long read direct RNA sequencing


text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 2 used for nanopore direct RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001036

characteristic: plant growth medium

text: whole organism

text: dipolid

text: healthy

text: Arabidopsis thaliana

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 2 for long read direct RNA sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 3 used for nanopore direct RNA sequencing

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001037

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

text: ecotype

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 3 for long read direct RNA sequencing

characteristic: title


text: Martin-Luther-University Halle-Wittenberg

text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 1 used for nanopore direct RNA sequencing

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 7 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001038

characteristic: plant growth medium

text: whole organism

text: dipolid

text: healthy

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 1 for long read direct RNA sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 2 used for nanopore direct RNA sequencing

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 7 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001039

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characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 2 for long read direct RNA sequencing


text: public

characteristic: air temperature regimen

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text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 3 used for nanopore direct RNA sequencing

characteristic: description

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characteristic: plant growth medium

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text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 3 for long read direct RNA sequencing

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: INSDC status

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text: Arabidopsis thaliana

text: thale cress

text: 14 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001041

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characteristic: plant structure

text: dipolid

characteristic: ploidy

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text: Arabidopsis thaliana Col-0 replicate 1 for chromatin immunoprecipitation sequencing


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text: Arabidopsis thaliana

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characteristic: plant growth medium

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text: ecotype

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characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 14 day seedling

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characteristic: description

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characteristic: geographic location (country and/or sea)

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characteristic: plant growth medium

text: whole organism

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text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 2 used for ChIPSeq

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 14 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001045

text: whole organism

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text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 2 chromatin immunoprecipitation sequencing


text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana amiR-u1c in Col-0 background replicate 3 used for ChIPSeq

characteristic: description

characteristic: estimated size

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: Arabidopsis thaliana

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characteristic: plant growth medium

text: whole organism

text: dipolid

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text: Arabidopsis thaliana

text: ecotype

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characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 1 used for ChIPSeq

text: Germany

text: growth chamber

text: grown for 14 days under continuous light conditions at 22�C

text: Arabidopsis thaliana

text: thale cress

text: 14 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001047

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

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characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

characteristic: subspecific genetic lineage name

text: ecotype

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 1 chromatin immunoprecipitation sequencing


text: Martin-Luther-University Halle-Wittenberg

text: public

characteristic: air temperature regimen

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 2 used for ChIPSeq

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

characteristic: organism common name

text: 14 day seedling

characteristic: plant developmental stage

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001048

characteristic: plant growth medium

text: whole organism

text: dipolid

text: healthy

text: Arabidopsis thaliana

text: ecotype

characteristic: subspecific genetic lineage rank

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 2 chromatin immunoprecipitation sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 3 used for ChIPSeq

text: Germany

text: growth chamber

text: Arabidopsis thaliana

text: thale cress

text: 14 day seedling

text: half-strength Murashige Skoog (MS) - DOI: 10.1111/j.1399-3054.1962.tb08052.x; plates containing 0.8% phytoagar - PECO:0001049

text: whole organism

characteristic: plant structure

text: dipolid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: soil pH

text: ecotype

text: Arabidopsis thaliana amiR-u170k in Col-0 background replicate 3 chromatin immunoprecipitation sequencing

characteristic: title


text: public

tag: Namespace:Institute of Avian Research "Vogelwarte Helgoland"

characteristic: collection date

text: blackcap

characteristic: common name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Canary Islands, La Palma

characteristic: geographic location (region and locality)

text: Sylvia atricapilla

characteristic: organism

text: Sylvia atricapilla

text: M

characteristic: sex

text: blood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Avian Research "Vogelwarte Helgoland"

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: blackcap

text: Spain

text: Canary Islands, La Palma

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: blackcap

text: Cape Verde

text: Sao Nicolau

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


text: public

characteristic: collection date

text: blackcap

text: Greece

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text: Sylvia atricapilla

text: M

text: blood

characteristic: title


text: public

text: blackcap

characteristic: common name

characteristic: description

text: Portugal

text: Azores, Sao Miguel

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


text: public

text: blackcap

text: Portugal

characteristic: geographic location (country and/or sea)

text: Azores, Terceira

characteristic: geographic location (region and locality)

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


text: public

text: blackcap

text: Cape Verde

text: Brava

text: Sylvia atricapilla

characteristic: organism

text: Sylvia atricapilla

text: M

characteristic: sex

text: blood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: blackcap

text: Cape Verde

text: Santiago

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: blackcap

text: Ireland

text: Dublin

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: blackcap

text: Cape Verde

text: Santo Antao

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: blackcap

text: Georgia

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: blackcap

text: Portugal

text: Madeira

text: Sylvia atricapilla

text: Sylvia atricapilla

text: F

text: blood


text: public

characteristic: collection date

text: blackcap

text: Georgia

text: Sylvia atricapilla

text: Sylvia atricapilla

text: F

text: blood

characteristic: title


text: public

text: not provided

text: blackcap

characteristic: common name

characteristic: description

text: Austria

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


text: public

text: blackcap

text: Belgium

characteristic: geographic location (country and/or sea)

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


text: public

text: blackcap

text: Spain

text: Guadarrama

characteristic: geographic location (region and locality)

text: Sylvia atricapilla

characteristic: organism

text: Sylvia atricapilla

text: M

text: blood


characteristic: ENA-CHECKLIST

text: public

text: blackcap

text: Portugal

text: Madeira

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

characteristic: sex

text: blood


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: blackcap

text: Spain

text: Mallorca

text: Sylvia atricapilla

text: Sylvia atricapilla

text: M

text: blood


characteristic: External Id

characteristic: INSDC center name

text: public

text: blackcap

text: Spain

text: Mallorca

text: Sylvia atricapilla

text: Sylvia atricapilla

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text: blood


text: CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DNA from Non injected sorted anlagen after CTL RNAi (T25)

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia

characteristic: strain


text: CNRS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Total DNA after CTL RNAi (D3) rep1

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

characteristic: collection date

text: Total DNA after CTL RNAi (D3) rep2

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia

characteristic: title


text: CNRS

text: public

text: DNA from Non injected sorted anlagen after LIG4 RNAi (T25)

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: PTET_Ni_KU70-RNAi_T25_AlgFACS_DNA_BET44_S2

text: DNA from Non injected sorted anlagen after KU70 RNAi (T25)

text: France

text: Paramecium tetraurelia

characteristic: organism

text: Paramecium tetraurelia


characteristic: ENA-CHECKLIST

text: CNRS

text: public

text: Total DNA after KU70 RNAi (D3)

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: PTET_Ku70-6E_L4440_T25_AlgFACS_DNA_BET45_S3

text: DNA from Ku70-6E injected sorted anlagen after CTL RNAi (T25) rep1

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: PTET_Ku70-6Er2_L4440_T25_AlgFACS_DNA_BET63

text: DNA from Ku70-6E injected sorted anlagen after CTL RNAi (T25) rep2

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: PTET_Ku70-6Er2_L4440_T25_AlgFACS_DNA_Covaris_BET63

text: DNA from Ku70-6E injected sorted anlagen after CTL RNAi (T25) rep3

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: Total DNA of Ku70-6E injected cells after CTL RNAi (D3) rep1

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: PTET_Ku70-6E_L4440_d3_Total_DNA_BET47_S5

text: Total DNA of Ku70-6E injected cells after CTL RNAi (D3) rep2

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: Total DNA of Ku70-6E injected cells after CTL RNAi (D3) rep3

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: PTET_Ku70-6E_KU70-RNAi_T25_AlgFACS_DNA_BET46_S4

text: DNA from Ku70-6E injected sorted anlagen after KU70 RNAi (T25)

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: Total DNA of Ku70-6E injected cells after KU70 RNAi (D3) rep1

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: PTET_Ku70-6E_KU70-RNAi_d3_Total_DNA_BET48_S6

text: Total DNA of Ku70-6E injected cells after KU70 RNAi (D3) rep2

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: CNRS

text: public

text: Total DNA of Ku70-6E injected cells after KU70 RNAi (D3) rep3

text: France

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: Georgia State University

text: public

tag: Namespace:Georgia State University

text: human

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

text: CNRS Universite de Montpellier

text: public

text: ena-SAMPLE-TAB-14-09-2023-13:07:23:447-39732

tag: Namespace:CNRS Universite de Montpellier

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: common name

text: NanoForkSpeed t29h raw fastq

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: 3D7 - TK+

characteristic: strain

text: NFS t29h

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: CNRS Universite de Montpellier

text: public

text: ena-SAMPLE-TAB-14-09-2023-13:07:23:447-39733

text: malaria parasite P. falciparum

text: NanoForkSpeed t35h raw fastq

text: France

text: Plasmodium falciparum

text: Plasmodium falciparum

text: 3D7 - TK+

text: NFS t35h


name: SAMIN0003787-Exploring genome diversity of Termite and termitarium from Western ghats for novel anti-microbials

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Dhanalakshmi Venkatesan, Subalakshmi Kaarmegam Pandiarajan, Rajendhran Jeyaprakash and Madurai Kamaraj University

text: IBDC

characteristic: broker name

text: Genome diversity of Termite and termitarium from Western Ghats region for novel antimicrobials has been explored.

text: Termitarium

characteristic: environment (biome)

text: Soil

characteristic: environment (feature)

text: Termite and Termitarium

characteristic: environment (material)

text: India

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Brevibacillus parabrevis

characteristic: project name

text: Brevibacillus parabrevis

text: Illumina Novaseq 6000

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

characteristic: Submitter Id

characteristic: collection date

text: New MAC genome sequencing upon ND7-KD

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Paramecium tetraurelia

characteristic: organism

text: Paramecium tetraurelia


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: New MAC genome sequencing upon ICOP1-KD

text: Germany

text: Paramecium tetraurelia

text: Paramecium tetraurelia

characteristic: strain

characteristic: title


text: public

text: New MAC genome sequencing upon ICOP2—KD

text: Germany

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: public

text: New MAC genome sequencing upon ICOP1/2-KD

text: Germany

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: public

text: New MAC genome sequencing upon ND7/PGM-KD

text: Germany

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: public

text: New MAC genome sequencing upon ICOP1/2/PGM-KD

text: Germany

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: not provided


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: Throat/Nasal

characteristic: isolation source host-associated

text: Dutch COVID-19 response sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: Throat

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Lysis

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Yale University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Yale University

characteristic: Submitter Id

text: human

text: meningioma

text: USA

text: Homo sapiens

text: Homo sapiens

text: meningioma

characteristic: title


text: UNIVERSITY OF ZURICH

text: public

tag: Namespace:UNIVERSITY OF ZURICH

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

text: metaSPAdes: k-mer sizes 21,33,55,77,99,127. Bbmap v37.02: kfilter 31, subfilter 15, maxindel 80.

characteristic: binning parameters

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Sphingorhabdus sp.

text: Bacterial Functional Diversity

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingorhabdus sp.

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Rhodoferax sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Rhodoferax sp.

text: GTDB-Tk v0.1.6

characteristic: title


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Perlucidibaca sp.

text: Bacterial Functional Diversity

characteristic: project name

characteristic: sample derived from

text: uncultured Perlucidibaca sp.

text: GTDB-Tk v0.1.6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: Spirosomaceae bacterium

characteristic: organism

text: Bacterial Functional Diversity

text: Spirosomaceae bacterium

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Cellvibrio sp.

text: Bacterial Functional Diversity

characteristic: project name

text: uncultured Cellvibrio sp.

text: GTDB-Tk v0.1.6

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Flavobacterium sp.

characteristic: organism

text: Bacterial Functional Diversity

characteristic: sample derived from

text: uncultured Flavobacterium sp.

text: GTDB-Tk v0.1.6


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Undibacterium sp.

text: Bacterial Functional Diversity

characteristic: project name

text: uncultured Undibacterium sp.

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Sphingomonas sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Sphingomonas sp.

text: GTDB-Tk v0.1.6

characteristic: title


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Deefgea sp.

text: Bacterial Functional Diversity

characteristic: project name

characteristic: sample derived from

text: uncultured Deefgea sp.

text: GTDB-Tk v0.1.6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Aquabacterium sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Aquabacterium sp.

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Limnohabitans sp.

text: Bacterial Functional Diversity

characteristic: project name

text: uncultured Limnohabitans sp.

text: GTDB-Tk v0.1.6

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Polynucleobacter sp.

characteristic: organism

text: Bacterial Functional Diversity

characteristic: sample derived from

text: uncultured Polynucleobacter sp.

text: GTDB-Tk v0.1.6


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Paucibacter sp.

text: Bacterial Functional Diversity

characteristic: project name

text: uncultured Paucibacter sp.

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Albidiferax sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Albidiferax sp.

text: GTDB-Tk v0.1.6

characteristic: title


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Hylemonella sp.

text: Bacterial Functional Diversity

characteristic: project name

characteristic: sample derived from

text: uncultured Hylemonella sp.

text: GTDB-Tk v0.1.6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Pseudomonas sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Pseudomonas sp.

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Duganella sp.

text: Bacterial Functional Diversity

characteristic: project name

text: uncultured Duganella sp.

text: GTDB-Tk v0.1.6

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Pedobacter sp.

characteristic: organism

text: Bacterial Functional Diversity

characteristic: sample derived from

text: uncultured Pedobacter sp.

text: GTDB-Tk v0.1.6


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Rhodoferax sp.

text: Bacterial Functional Diversity

characteristic: project name

text: uncultured Rhodoferax sp.

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Hydrogenophaga sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Hydrogenophaga sp.

text: GTDB-Tk v0.1.6

characteristic: title


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Sandarakinorhabdus sp.

text: Bacterial Functional Diversity

characteristic: project name

characteristic: sample derived from

text: uncultured Sandarakinorhabdus sp.

text: GTDB-Tk v0.1.6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Sphingorhabdus sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Sphingorhabdus sp.

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Flavobacterium sp.

text: Bacterial Functional Diversity

characteristic: project name

text: uncultured Flavobacterium sp.

text: GTDB-Tk v0.1.6

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Undibacterium sp.

characteristic: organism

text: Bacterial Functional Diversity

characteristic: sample derived from

text: uncultured Undibacterium sp.

text: GTDB-Tk v0.1.6


text: UNIVERSITY OF ZURICH

text: public

text: metaSPAdes v3.11.1

text: MetaBAT2 v2.12.1

characteristic: binning software

text: cell culturing

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: CheckM v1.0.3

characteristic: completeness software

characteristic: contamination score

text: MAG

characteristic: description

text: freshwater ecosystem

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater culture

text: microcosm

characteristic: local environmental context

text: freshwater metagenome

characteristic: metagenomic source

text: Spirosomaceae bacterium

text: Bacterial Functional Diversity

characteristic: project name

text: Spirosomaceae bacterium

text: GTDB-Tk v0.1.6

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.11.1

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT2 v2.12.1

text: cell culturing

text: CheckM v1.0.3

text: MAG

text: freshwater ecosystem

text: Switzerland

text: freshwater culture

text: microcosm

text: freshwater metagenome

text: uncultured Polaromonas sp.

characteristic: organism

text: Bacterial Functional Diversity

text: uncultured Polaromonas sp.

text: GTDB-Tk v0.1.6

characteristic: title


text: public

tag: Namespace:Kohat University of Science and Technology

text: respiratory sample

text: Maryam Gul

characteristic: collection date

text: culture.sample

characteristic: description

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Pakistan

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Sajid Ali

text: bacterial

characteristic: isolate

text: LRH hospital

text: PRL Peshawar

text: Peshawar Pakistan

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: serovar

characteristic: strain

text: culture.sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kohat University of Science and Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: respiratory sample

text: Maryam Gul

text: culture.sample

text: Pakistan

text: Pakistan

text: diseased

text: Homo sapiens

text: Sajid Ali

text: bacterial

text: LRH hospital

text: PRL Peshawar

text: Peshawar Pakistan

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: culture.sample


text: University clinic Duesseldorf

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

text: human

characteristic: host common name

text: not collected

text: homo sapien

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University clinic Duesseldorf

text: public

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: human

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Laboratoire de virologie, Geneva, Switzerland

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-SNRCI-HUG-42417716/2023

text: other

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: HUG

text: public

characteristic: Submitter Id

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-HUG-42429243/2023

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

text: public

tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: SIB

text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: Martinetti Lucchini Gladys, Valeria Spina, Gloria Gaudio

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-12_28269729/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute of Medical Virology, Zürich, Switzerland

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Universität Zürich, Zürich, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Annette Audigé, Guido Bloemberg, Michael Huber, Alexandra Trkola

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-47a8d68e/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: GE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-42386260/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

text: HUG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-42391086/2023

characteristic: isolate


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-42402614/2023

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: HUG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: GE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-42413999/2023

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-42422415/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-12_28227864/2023

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

text: public

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

text: GE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-42368809/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-32_28253045/2023

characteristic: isolate

text: active surveillance not initiated by an outbreak


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: VS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-HUG-42353529/2023

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: HUG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-SNRCI-HUG-42406159/2023

characteristic: organism

text: other

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-42471185/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Universitäts-Kinderspital Zürich, Zürich, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Annette Audigé, Guido Bloemberg, Michael Huber, Alexandra Trkola

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6b222/2023

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: ZH

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6b1f0/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SZ

characteristic: geographic location (region and locality)

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SZ-UZH-IMV-3ba6b2ba/2023

characteristic: isolate


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Martinetti Lucchini Gladys, Valeria Spina, Gloria Gaudio

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-12_28250902/2023

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: UniversitätsSpital Zürich, Zürich, Switzerland

characteristic: collector name

text: Switzerland

text: ZH

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6b2e3/2023

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-42_28238416/2023

characteristic: isolate

text: active surveillance not initiated by an outbreak