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text: Danish Covid-19 Genome Consortium

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text: Human

text: n_infections=3,last_infection_date=2022-12-05

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-364197/2022

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-01-31

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-10

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2021-11-15

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-12-13

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-02-21

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Molekylær Medicinsk Afdeling, Aarhus University Hospital, Aarhus, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=3,last_infection_date=2022-03-21

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-03-21

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_date=2022-02-07

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-405009/2022

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-01-17

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-235013/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2022-02-14

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_date=2022-01-31

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-02-28

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-286340/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-12-27

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-24

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

characteristic: title


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2021-12-20

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2021-02-22

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: Dalhousie University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: aquatic biome

characteristic: broad-scale environmental context

text: LUCIE GALLOT-LAVALLEE

characteristic: collected by

text: DALHOUSIE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: CCAP 1560/4

text: amoeba culture

characteristic: environmental medium

text: Canada

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: HALIFAX | DALHOUSIE UNIVERSITY

text: Dalhousie University laboratory

characteristic: habitat

text: Paramoeba pemaquidensis

characteristic: host taxid

text: Culture Collection of Algae and Protozoa

characteristic: identified by

text: marine biome

characteristic: local environmental context

text: protist metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

characteristic: sample derived from

text: protist metagenome

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

text: cace9365-c323-4ebc-bbb8-14b1d7601df7-asg-metagenome

characteristic: tolid


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dalhousie University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LUCIE GALLOT-LAVALLEE

characteristic: collected by

text: DALHOUSIE UNIVERSITY

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: CCAP 1560/4

text: amoeba culture

text: Canada

characteristic: geographic location (country and/or sea)

text: HALIFAX | DALHOUSIE UNIVERSITY

characteristic: geographic location (region and locality)

text: Dalhousie University laboratory

text: Paramoeba pemaquidensis

characteristic: host scientific name

text: metagenome-assembled genome

characteristic: investigation type

text: Amoeba: Paramoeba pemaquidensis

text: marine biome

text: protist metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Devosia sp.

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Devosia sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: N

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 750dab3c-b731-43c8-9d26-37bd95f72bba-asg-MAGScoT_cleanbin_000003

characteristic: title


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dalhousie University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LUCIE GALLOT-LAVALLEE

text: DALHOUSIE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: CCAP 1560/4

text: amoeba culture

characteristic: environmental medium

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: HALIFAX | DALHOUSIE UNIVERSITY

text: Dalhousie University laboratory

characteristic: habitat

text: Paramoeba pemaquidensis

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Amoeba: Paramoeba pemaquidensis

text: marine biome

characteristic: local environmental context

text: protist metagenome

text: Roseibium alexandrii

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

characteristic: sample derived from

text: Roseibium alexandrii

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

text: PROKKA (version 1.14.5)

text: 3b370e5f-1f9c-4ae0-aa8a-1fec07cdaac7-asg-MAGScoT_cleanbin_000002

characteristic: tolid


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dalhousie University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LUCIE GALLOT-LAVALLEE

characteristic: collected by

text: DALHOUSIE UNIVERSITY

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: CCAP 1560/4

text: amoeba culture

text: Canada

characteristic: geographic location (country and/or sea)

text: HALIFAX | DALHOUSIE UNIVERSITY

characteristic: geographic location (region and locality)

text: Dalhousie University laboratory

text: Paramoeba pemaquidensis

characteristic: host scientific name

text: metagenome-assembled genome

characteristic: investigation type

text: Amoeba: Paramoeba pemaquidensis

text: marine biome

text: protist metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Tritonibacter mobilis

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Tritonibacter mobilis

text: Pacbio Sequel II

characteristic: sequencing method

text: N

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 0776b6b0-e989-4096-a78d-2a7191e990c1-asg-MAGScoT_cleanbin_000004

characteristic: title


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dalhousie University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LUCIE GALLOT-LAVALLEE

text: DALHOUSIE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: CCAP 1560/4

text: amoeba culture

characteristic: environmental medium

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: HALIFAX | DALHOUSIE UNIVERSITY

text: Dalhousie University laboratory

characteristic: habitat

text: Paramoeba pemaquidensis

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Amoeba: Paramoeba pemaquidensis

text: marine biome

characteristic: local environmental context

text: protist metagenome

text: Thalassospira lucentensis

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

characteristic: sample derived from

text: Thalassospira lucentensis

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

text: PROKKA (version 1.14.5)

text: 9539d326-d7c7-44e1-a73b-533deb3d07ec-asg-MAGScoT_cleanbin_000005

characteristic: tolid


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dalhousie University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LUCIE GALLOT-LAVALLEE

characteristic: collected by

text: DALHOUSIE UNIVERSITY

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: CCAP 1560/4

text: amoeba culture

text: Canada

characteristic: geographic location (country and/or sea)

text: HALIFAX | DALHOUSIE UNIVERSITY

characteristic: geographic location (region and locality)

text: Dalhousie University laboratory

text: Paramoeba pemaquidensis

characteristic: host scientific name

text: metagenome-assembled genome

characteristic: investigation type

text: Amoeba: Paramoeba pemaquidensis

text: marine biome

text: protist metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Escherichia coli

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Escherichia coli

text: Pacbio Sequel II

characteristic: sequencing method

text: N

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 5c5bf2be-23cf-4137-bfbf-2be0f28b6a71-asg-MAGScoT_cleanbin_000001

characteristic: title


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dalhousie University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LUCIE GALLOT-LAVALLEE

text: DALHOUSIE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: CCAP 1560/4

text: amoeba culture

characteristic: environmental medium

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: HALIFAX | DALHOUSIE UNIVERSITY

text: Dalhousie University laboratory

characteristic: habitat

text: Paramoeba pemaquidensis

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Amoeba: Paramoeba pemaquidensis

text: marine biome

characteristic: local environmental context

text: protist metagenome

text: uncultured Halomonas sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

characteristic: sample derived from

text: uncultured Halomonas sp.

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

text: PROKKA (version 1.14.5)

text: c3c16ec8-700a-486a-9205-1d1253e55f81-asg-MAGScoT_cleanbin_000006

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: aquatic biome

characteristic: broad-scale environmental context

text: PHIL ZEROFSKI

text: SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO

text: not provided

text: adult annelid tissue

text: USA

characteristic: geographic location (country and/or sea)

text: California | offshore San Diego | Torrey Pines artificial reef

characteristic: geographic location (region and locality)

text: Seafloor. Associated with mussels Mytilus californianus.

text: adult

characteristic: host life stage

text: Chaetopterus dewysee

characteristic: host scientific name

text: not collected

characteristic: host sex

text: GREG ROUSE

text: marine benthic biome

text: annelid metagenome

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: proxy voucher

characteristic: proxy voucher url

text: hand-collected via SCUBA diving

characteristic: sample collection device or method

text: annelid metagenome

text: 8f8db4c0-9d7f-449f-869f-8f57f7bf07f7-asg-metagenome

characteristic: title

characteristic: voucher institution url


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: PHIL ZEROFSKI

characteristic: collecting institution

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult annelid tissue

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: habitat

text: adult

text: Chaetopterus dewysee

text: not collected

characteristic: host taxid

text: GREG ROUSE

text: metagenome-assembled genome

characteristic: investigation type

text: Annelid: Chaetopterus dewysee

text: marine benthic biome

characteristic: local environmental context

text: annelid metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: hand-collected via SCUBA diving

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 1c04ac54-1172-41e2-a741-15e354538ad9-asg-MAGScoT_cleanbin_000001


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: PHIL ZEROFSKI

characteristic: collecting institution

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult annelid tissue

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: adult

characteristic: host life stage

text: Chaetopterus dewysee

characteristic: host scientific name

text: not collected

characteristic: host sex

text: GREG ROUSE

text: metagenome-assembled genome

text: Annelid: Chaetopterus dewysee

text: marine benthic biome

text: annelid metagenome

text: Vibrio sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: proxy voucher

characteristic: proxy voucher url

text: hand-collected via SCUBA diving

characteristic: sample collection device or method

text: Vibrio sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 5e74ba72-1d07-4fab-815b-a68f9ca9ad86-asg-MAGScoT_cleanbin_000002


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: PHIL ZEROFSKI

text: not provided

text: adult annelid tissue

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: habitat

text: adult

text: Chaetopterus dewysee

text: not collected

characteristic: host taxid

text: GREG ROUSE

text: metagenome-assembled genome

characteristic: investigation type

text: Annelid: Chaetopterus dewysee

text: marine benthic biome

characteristic: local environmental context

text: annelid metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Kistimonas sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: hand-collected via SCUBA diving

characteristic: sample derived from

text: Kistimonas sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 4a1ffeeb-3992-4a28-9e32-28f9aada64ea-asg-MAGScoT_cleanbin_000003


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: PHIL ZEROFSKI

characteristic: collecting institution

text: not provided

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult annelid tissue

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: adult

characteristic: host life stage

text: Chaetopterus dewysee

characteristic: host scientific name

text: not collected

characteristic: host sex

text: GREG ROUSE

text: metagenome-assembled genome

text: Annelid: Chaetopterus dewysee

text: marine benthic biome

text: annelid metagenome

text: Spirochaetia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: proxy voucher

characteristic: proxy voucher url

text: hand-collected via SCUBA diving

characteristic: sample collection device or method

text: Spirochaetia bacterium

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 03e4f5d5-dacf-4468-93a7-e7b19fb300a1-asg-MAGScoT_cleanbin_000004


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Loughborough University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Loughborough University

characteristic: Submitter Id

text: Metagenome from Human faecal sample, taken from Tangail district, Bangladesh.

characteristic: description

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Human faecal sample (111011TR002)

characteristic: title


text: Loughborough University

text: public

text: Metagenome from Waste water, taken from Tangail district, Bangladesh.

text: Bangladesh

characteristic: geographic location (country and/or sea)

text: Tangail district

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome

text: Waste water (11411TR006)


text: Loughborough University

text: public

text: Metagenome from Poultry caecal sample, taken from Tangail district, Bangladesh.

text: Bangladesh

text: Tangail district

text: metagenome

characteristic: organism

text: metagenome

text: Poultry caecal sample (11911TR006)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Poultry caecal sample (11911TR008)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Human faecal sample (111011TR008)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Poultry caecal sample (11912TR101)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Human faecal sample (121111TR011)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Human faecal sample (121111TR018)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Human faecal sample (121111TR020)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Human faecal sample (121112TR118)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Human faecal sample (121112TR120)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Waste water (12412TR116)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Waste water (12412TR118)


text: Loughborough University

text: public

text: Bangladesh

text: Tangail district

text: metagenome

text: metagenome

text: Waste water (12412TR120)


text: Loughborough University

text: public

text: Metagenome from Human faecal sample, taken from Dhaka city, Bangladesh.

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (311011DL062)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (311011DL066)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (311011DL087)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (311012DL164)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (311012DL181)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (311012DL187)


text: Loughborough University

text: public

text: Metagenome from Waste water-2, taken from Dhaka city, Bangladesh.

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Waste water-2 (311311DL062)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Waste water-2 (311311DL067)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Waste water-2 (311311DL087)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Waste water-2 (311312DL164)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Waste water-2 (311312DL168)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Waste water-2 (311312DL186)


text: Loughborough University

text: public

text: Metagenome from Poultry caecal sample, taken from Dhaka city, Bangladesh.

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Poultry caecal sample (31911DL062)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Poultry caecal sample (31911DL067)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Poultry caecal sample (31911DL083)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Poultry caecal sample (31911DL087)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Poultry caecal sample (31912DL164)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Poultry caecal sample (31912DL186)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (321111DL074)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (321111DL076)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (321111DL079)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (321111DL080)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (321111DL096)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (321112DL191)


text: Loughborough University

text: public

text: Bangladesh

text: Dhaka city

text: metagenome

text: metagenome

text: Human faecal sample (321112DL194)


characteristic: ENA first public

text: School of Life Sciences, University of Sussex

text: public

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: fruit fly

characteristic: common name

text: Protocols: Wing imaginal discs were dissected from wandering 120hr old L3 larvae in ringers solution, snap frozen and stored at -20 Larvae were cultured on standard media using a 3hr egg lay RNA was extracted from dissected wing imaginal discs using the Qiagen miRNeasy Micro Kit RNA was depleted for the 2S rRNA and small RNA seq libraries were prepared using the QIAseq® miRNA Library Preparation Kit

text: third instar larval stage

characteristic: developmental stage

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

characteristic: organism part

text: Drosophila melanogaster

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: fruit fly

text: third instar larval stage

text: pcmwt

text: not collected

text: not applicable

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: pcmwt


E-MTAB-13802:Sample 1

text: CNIC

text: public

characteristic: SRA accession

text: E-MTAB-13802:Sample 1

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

text: Protocols: The uterus was removed from 6-day pregnant dams at 9:00 am. 38 embryos were dissected to discard the extraembryonic portion and combined to ensure sufficient number of cells for analysis. The embryos were dissociated into single cells by incubating them in 200μl of TriplE Express for 8 minutes at 37°C with mild mixing every 2 minutes. To stop the TriplE Express, 1ml of ice-cold 10% FBS in PBS was added, and the cells were then filtered through a 40μM Flowmi cell strainer. Following centrifugation at 300g for 4 minutes, the supernatant was removed, and the cells were resuspended in 50μl of PBS containing 0.04% BSA. Cell counts and viability assessments were performed using trypan blue staining on a Countess II instrument (Invitrogen), confirming that over 95% of cells exhibited high sample quality.The isolation of cell nuclei was carried out following the low-cell input version of the 10X protocol (Protocol Link: https://assets.ctfassets.net/an68im79xiti/6t5iwATCRaHB4VWOJm2Vgc/bdfd23cdc1d0a321487c8b231a448103/CG000365_DemonstratedProtocol_NucleiIsolation_ATAC_GEX_Sequencing_RevE.pdf). In brief, the 50μl cell suspension was transferred to a 0.2ml PCR tube and centrifuged at 300g for 5 minutes. After removing the supernatant, the cells were resuspended in 50μl of ice-cold nuclear extraction (NE) buffer (containing 10mM Tris pH 7.5, 10mM NaCl, 3mM MgCl2, 1% BSA, 0.1% Tween, 1mM DTT, 1U/ul RNaseIn from Promega, 0.1% NP40, and 0.01% Digitonin) and incubated on ice for 4 minutes. Subsequently, 50μl of wash buffer (similar to NE buffer but without NP40 and digitonin) was added, and the nuclei were pelleted by centrifugation at 500g for 5 minutes at 4°C. Following removal of the supernatant, the nuclei underwent an additional wash with 50μl of diluted nuclei buffer (10x Genomics), were pelleted again, and eventually resuspended in 7ul of diluted nuclei buffer (10x Genomics). A 1μl sample was assessed for quality and nuclei counts using a Countess II instrument, revealing that more than 99% of nuclei stained positively for trypan blue and exhibited the expected morphology. The nuclei were then diluted. A total of 13750 nuclei were taken forward for 10x snATACseq library preparation. The uterus was removed from 6-day pregnant dams at 9:00 am. 38 embryos were dissected to discard the extraembryonic portion and combined to ensure sufficient number of cells for analysi as previously described: Sendra, M., Mañes, J., Domínguez, J. N. & Torres, M. Live Imaging of Early Cardiac Progenitors in the Mouse Embryo. J. Vis. Exp. 2022, e64273 (2022). NGS experiments were performed in the Genomics Unit of the CNIC. Nuclei were counted and their integrity was checked using the Countess III cell counter (Thermofisher). 13750 nuclei were taken for the transposition reaction and loaded into one port of a Chromium Next GEM Chip H (10x Genomics) with a target output of 7,000 nuclei. Single nuclei were encapsulated into emulsion droplets using the Chromium Controller (10x Genomics).  Sn-ATAC-seq libraries were prepared using the Chromium Next GEM Single Cell ATAC Kit v1.1 (10x Genomics) following the manufacturer instructions and the library was amplified using a SureCycler 8800 thermal cycler (Agilent Technologies). The average size of the library was then calculated using a High sensitivity DNA chip on a 2100 Bioanalyzer (Agilent Technologies) and the concentration was determined using the Qubit fluorometer (Thermofisher).

characteristic: description

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Pre-streak embryo

text: Mus musculus

text: Sample 1


text: Department of Veterinary Sciences, LMU Muenchen

text: public

text: 5' Chromium 10X of T. brucei Lister 427 strain. Mixed cell lines expressing VSG-2 (P10) or VSG-13 (N50).

text: Germany

characteristic: geographic location (country and/or sea)

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

characteristic: title


characteristic: ENA first public

text: public

text: SL_SS3x scRNA-seq of T. brucei Lister 427 strain. Testing the effect of different TDE1 and RT primer concentrations on the yields for the single-cell libraries.

text: Germany

text: Trypanosoma brucei brucei

characteristic: organism

text: Trypanosoma brucei brucei

text: SL_SS3x_002_Tagm_and_RT_primer_conc_test


text: public

characteristic: collection date

text: SL_SS3x scRNA-seq of T. brucei Lister 427 strain. Testing the effect of different TDE1 and RT primer concentrations on the yields for the single-cell libraries. This sample contains the indexes.

text: Germany

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: SL_SS3x_002_Tagm_and_RT_primer_conc_test_indexes


text: public

text: SL_SS3x scRNA-seq of T. brucei Lister 427 strain. Mixed cell lines expressing VSG-2 (P10) or VSG-13 (N50).

text: Germany

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei


text: public

text: SL_SS3x scRNA-seq of T. brucei Lister 427 strain. Mixed cell lines expressing VSG-2 (P10) or VSG-13 (N50). This sample contains the indexes.

text: Germany

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei


text: public

text: SL_SS3x scRNA-seq of T. brucei Lister 427 strain. Multiple samples:  (1) Cell line with Tet-inducible Cas9 and the constitutive expression of a sgRNA targeting VSG-2 CDS between nucleotides 766-785. Time course (0hrs,24hrs,48hrs,72hrs,96hrs,10days) after Cas9-mediated DSB induction at nucleotide position 782 of VSG-2 CDS. (2) Cell line with Tet-inducible Cas9 and the constitutive expression of a sgRNA targeting between nucleotides 59993-60012 of BES1 (BES1_Tb427v11), positions 40209-40228 relative to the promoter. 0hrs and 96hrs time points after Cas9-mediated DSB induction at nucleotide position 40225 downstream of BES1 promoter. (3) Cell line with Tet-inducible Cas9 and the constitutive expression of a sgRNA targeting between nucleotides 70023-70042 of BES1 (BES1_Tb427v11), positions 50209-50228 relative to the promoter. 0hrs and 96hrs time points after Cas9-mediated DSB induction at nucleotide position 50225 downstream of BES1 promoter. (4) Cell line with Tet-inducible Cas9 and the constitutive expression of a sgRNA targeting between nucleotides 74592-74611 of BES1 (BES1_Tb427v11), positions 54808-54827 relative to the promoter. 0hrs and 96hrs time points after Cas9-mediated DSB induction at nucleotide position 54824 downstream of BES1 promoter. (5) Cell line with Tet-inducible Cas9 and the constitutive expression of a sgRNA targeting between nucleotides 77917-77936 of BES1 (BES1_Tb427v11), positions 58133-58152 relative to the promoter. 0hrs and 96hrs time points after Cas9-mediated DSB induction at nucleotide position 58149 downstream of BES1 promoter. (6) Cell line with Tet-inducible Cas9 and the constitutive expression of a sgRNA targeting between nucleotides 593-612 of VSG-8 CDS. 0hrs and 96hrs time points after Cas9-mediated DSB induction at nucleotide position 609 of VSG-8 CDS. (7) Cell line with Tet-inducible Cas9 and the constitutive expression of a sgRNA targeting between nucleotides 1089-1108 of VSG-8 CDS. 0hrs and 96hrs time points after Cas9-mediated DSB induction at nucleotide position 1105 of VSG-8 CDS.

text: Germany

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei