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text: Stool sample from infant 42-036 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Synbiotic Formula

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Vaginal

text: Stool sample from infant 35-012 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

text: Synbiotic Formula


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 42-035 born with Vaginal delivery, at month 36 of age, been fed Control Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

characteristic: project name

text: Homo sapiens

text: Illumina

text: Control Formula

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Vaginal

text: Stool sample from infant 42-040 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Synbiotic Formula

characteristic: special diet


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 42-047 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

text: Synbiotic Formula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Vaginal

text: Stool sample from infant 42-053 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

characteristic: project name

text: Homo sapiens

text: Illumina

text: Synbiotic Formula

characteristic: title


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 42-051 born with Vaginal delivery, at month 36 of age, been fed Control Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Control Formula

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Caesarean

text: Stool sample from infant 01-124 born with Caesarean delivery, at month 36 of age, been fed Synbiotic Formula

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

text: Synbiotic Formula


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 01-126 born with Vaginal delivery, at month 36 of age, been fed Breast Milk

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

characteristic: project name

text: Homo sapiens

text: Illumina

text: Breast Milk

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Vaginal

text: Stool sample from infant 01-127 born with Vaginal delivery, at month 36 of age, been fed Breast Milk

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Breast Milk

characteristic: special diet


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 01-125 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

text: Synbiotic Formula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Vaginal

text: Stool sample from infant 39-043 born with Vaginal delivery, at month 36 of age, been fed Breast Milk

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

characteristic: project name

text: Homo sapiens

text: Illumina

text: Breast Milk

characteristic: title


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 42-050 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Synbiotic Formula

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Vaginal

text: Stool sample from infant 42-024 born with Vaginal delivery, at month 36 of age, been fed Control Formula

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

text: Control Formula


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 42-045 born with Vaginal delivery, at month 36 of age, been fed Synbiotic Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

characteristic: project name

text: Homo sapiens

text: Illumina

text: Synbiotic Formula

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Caesarean

text: Stool sample from infant 42-054 born with Caesarean delivery, at month 36 of age, been fed Control Formula

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Control Formula

characteristic: special diet


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 42-055 born with Vaginal delivery, at month 36 of age, been fed Control Formula

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

text: Control Formula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Caesarean

text: Stool sample from infant 42-058 born with Caesarean delivery, at month 36 of age, been fed Breast Milk

text: human gut

text: lower intestine

text: feacal matter

text: France

characteristic: geographic location (country and/or sea)

text: stool

text: human-gut

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

characteristic: project name

text: Homo sapiens

text: Illumina

text: Breast Milk

characteristic: title


text: TUM

text: public

text: human

characteristic: common name

text: Vaginal

characteristic: delivery

text: Stool sample from infant 42-060 born with Vaginal delivery, at month 36 of age, been fed Breast Milk

characteristic: description

text: human gut

characteristic: environment (biome)

text: lower intestine

characteristic: environment (feature)

text: feacal matter

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: stool

characteristic: host body product

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: INFANT MICROBIOME OVERTIME

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Breast Milk

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Zoology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Zoology

characteristic: Submitter Id

characteristic: collection date

text: stool samples

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: organism

text: metagenome

text: gut microbiota


characteristic: ENA first public

text: University of Campania Luigi Vanvitelli

text: public

tag: Namespace:University of Campania Luigi Vanvitelli

text: Gastrointestinal tract

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: Stool from non-dialyzed CKD patient

characteristic: description

text: Human feces

characteristic: environmental medium

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Intestine

characteristic: local environmental context

text: Homo sapiens

text: Gut Microbiota and sulfur compounds in CKD

characteristic: project name

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: University of Campania Luigi Vanvitelli

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Gastrointestinal tract

text: human

text: Stool from hemodialysis patient

text: Human feces

text: Italy

text: Intestine

text: Homo sapiens

text: Homo sapiens


text: University of Campania Luigi Vanvitelli

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gastrointestinal tract

characteristic: collection date

text: human

text: Stool from kidney transplant patient

text: Human feces

text: Italy

text: Intestine

text: Homo sapiens

text: Homo sapiens


characteristic: ENA first public

text: University of Campania Luigi Vanvitelli

text: public

text: Gastrointestinal tract

characteristic: broad-scale environmental context

text: human

text: Stool from healthy controls

text: Human feces

text: Italy

characteristic: geographic location (country and/or sea)

text: Intestine

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Faculty of Science, Charles University

characteristic: INSDC first public

text: public

tag: Namespace:Faculty of Science, Charles University

unit: week

characteristic: age

unit: gram

characteristic: body weight

text: ArrayExpress

characteristic: broker name

text: gamma-delta T cell

text: not collected

text: Norway rat

characteristic: common name

text: Protocols: Gamma delta T cells from spleen were FACS sorted directly into the lysis buffer of a RNeasy® Micro Kit (QIAGEN, Hilden, Germany). RNA was isolated immediately according to the manufacturer’s instructions. The cold acclimation was performed as previosly descibed Tibenska et al. (J. Appl. Physiol., 2021). Male Wistar rats were housed in pairs in well-bedded cages to minimize environmental and social stress. All experiments were performed in the “winter-spring” season (from October till March). Rats divided into two experimental groups were acclimated to 8 ± 1 °C for 1 day or 14 days. The control group was kept at 24 ± 1 °C. Gamma delta t cells from spleen were FACS sorted directly into the lysis buffer of a RNeasy® Micro Kit (QIAGEN, Hilden, Germany). RNA was isolated immediately according to the manufacturer’s instructions. The isolated RNA was used for library preparation using the DNBSEQ Low Input Single Cell Smart-Seq Eukaryotic mRNA library preparation kit.

characteristic: description

text: adult

characteristic: developmental stage

text: cold-exposed for 14 days

characteristic: environmental stress

text: not collected

text: not applicable

characteristic: isolate

text: Rattus norvegicus

text: Rattus norvegicus

text: spleen

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Faculty of Science, Charles University

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: gamma-delta T cell

text: not collected

characteristic: collection date

text: Norway rat

text: adult

text: cold-exposed for one day

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: spleen

text: Rattus norvegicus

text: male

text: Wistar

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Faculty of Science, Charles University

characteristic: INSDC first public

text: public

characteristic: age

characteristic: body weight

text: ArrayExpress

characteristic: broker name

text: gamma-delta T cell

text: not collected

text: Norway rat

characteristic: common name

text: adult

text: room-temperature control

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: spleen

text: Rattus norvegicus

text: male

text: Wistar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

tag: Namespace:Department of Medical Microbiology, Stavanger University Hospital

text: Norway

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Department of Medical Microbiology, Stavanger University Hospital

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Norway

text: diseased

text: Homo sapiens

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: collection date

text: Norway

text: diseased

text: Homo sapiens

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

type: Other BioSample


text: public

text: Norway

characteristic: geographic location (country and/or sea)

text: healthy

text: Dog

text: faeces

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Norway

text: healthy

text: Dog

text: faeces

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

text: public

text: Norway

text: diseased

text: Homo sapiens

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: External Id

text: public

text: Norway

text: diseased

text: Homo sapiens

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Denmark

text: not provided

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Denmark

text: not provided

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Victor Chang Cardiac Research Institute

characteristic: INSDC first public

text: public

tag: Namespace:Victor Chang Cardiac Research Institute

unit: year

characteristic: age

characteristic: age at diagnosis

text: ArrayExpress

characteristic: broker name

text: medication: infliximab, thiopurine

characteristic: clinical information

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: ScRNA-seq of coding RNA from cells from both structuring and non-stricturing segments was undertaken. To prevent any cell type bias on RNA sequencing there was no prior selection, such as FACs sorting, involved Chromium™ 3’ Library and Gel Bead Kit v3 (PN-1000092; 10X Genomics, California, USA) Chromium™ 3’ Library and Gel Bead Kit v3 (PN-1000092; 10X Genomics, California, USA)

characteristic: description

text: adult

characteristic: developmental stage

text: Crohn's disease

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: small intestine

characteristic: organism part

text: stricturing ileum segment

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Victor Chang Cardiac Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: medication: ustekinumab

text: not collected

text: human

text: adult

text: Crohn's disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: small intestine

text: stricturing ileum segment

text: Homo sapiens

text: male


text: Victor Chang Cardiac Research Institute

text: public

characteristic: age

characteristic: age at diagnosis

text: ArrayExpress

characteristic: broker name

text: medication: azathioprine

characteristic: clinical information

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Crohn's disease

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: small intestine

text: stricturing ileum segment

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Victor Chang Cardiac Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: medication: infliximab, thiopurine

text: not collected

text: human

text: adult

text: Crohn's disease

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: small intestine

characteristic: organism part

text: non-stricturing ileum segment

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


text: Victor Chang Cardiac Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age at diagnosis

text: ArrayExpress

characteristic: broker name

text: medication: ustekinumab

characteristic: clinical information

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult

text: Crohn's disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: small intestine

text: non-stricturing ileum segment

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Eleusine infecting isolate of P. oryzae

characteristic: description

text: Brazil

characteristic: geographic location (country and/or sea)

text: Pyricularia oryzae

text: Pyricularia oryzae


text: Hannover Medical School

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Hannover Medical School

text: HeLa

text: human

text: HeLA cells (ATCC - CCL2 clone) transduced with pLJM1-macroH2A-3Xflag and infected with HSV-1 KOS (ATCC VR-1493) at an MOI of 1 for 72 hrs in the presence of cyclohexamide (CHX)

text: USA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: Hannover Medical School

text: public

characteristic: Submitter Id

text: HeLa

text: human

text: HeLA cells (ATCC - CCL2 clone) transduced with pLJM1-H2A-3Xflag and infected with HSV-1 KOS (ATCC VR-1493) at an MOI of 1 for 72 hrs in the presence of cyclohexamide (CHX)

text: USA

text: Homo sapiens

text: Homo sapiens


text: Hannover Medical School

text: public

text: HeLa

characteristic: collection date

text: human

text: HeLA cells (ATCC - CCL2 clone) transduced with pLJM1-H2B-3Xflag and infected with HSV-1 KOS (ATCC VR-1493) at an MOI of 1 for 72 hrs in the presence of cyclohexamide (CHX)

text: USA

text: Homo sapiens

text: Homo sapiens


text: Hannover Medical School

text: public

text: HeLa

text: human

characteristic: common name

text: HeLA cells (ATCC - CCL2 clone) transduced with pLJM1-H2A.B-3Xflag and infected with HSV-1 KOS (ATCC VR-1493) at an MOI of 1 for 72 hrs in the presence of cyclohexamide (CHX)

text: USA

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


text: public

tag: Namespace:Danmarks Tekniske Universitet (DTU) NNF Center for Biosustainability

text: human

characteristic: common name

text: EXP19006711_Edited_PIAL_A01_A02_A05_A06_A09_A12_gC4s231_1_gC7s257_1_gC6s311_1_gCXs313_1_gC17s297_1_gROSA26_4

characteristic: description

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: Danmarks Tekniske Universitet (DTU) NNF Center for Biosustainability

text: public

text: human

text: EXP19006711_Edited_PIAL_B01_B02_B05_B06_B09_B12_gC4s231_2_gC7s257_2_gC6s311_2_gCXs313_2_gC17s297_2_gROSA26_5

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_C01_C02_C05_C06_C09_C12_gC4s231_3_gC7s257_3_gC6s311_3_gCXs313_3_gC17s297_3_gDNMT1_21nt

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_D01_D02_D05_D06_D09_D12_gC4s231_4_gC7s257_4_gC6s311_4_gCXs313_4_gC17s297_4_gDNMT1_20nt

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_E01_E02_E05_E06_E09_E12_gC4s231_5_gC7s257_5_gC6s311_5_gCXs313_5_gC17s297_5_gCD19ex2

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_F01_F02_F05_F06_F09_gC4s231_6_gC7s257_6_gC6s311_6_gCXs313_6_gC5s255_1

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_G01_G02_G05_G06_G09_G12_gC4s231_7_gC7s257_7_gC6s311_7_gCXs313_7_gC5s255_2_gTRAC_43_20nt

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_H01_H02_H05_H06_H09_H12_gC4s231_8_gC7s257_8_gC6s311_8_gCXs313_8_gC5s255_3_gC6s311_6_ampl0

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_A03_A04_A07_A08_A10_A11_gC4s283_1_gC7s301_1_gC8s325_1_gC12s329_1_gC5s255_4_gAAVS1_1

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_B03_B04_B07_B08_B10_B11_gC4s283_2_gC7s301_2_gC8s325_2_gC12s329_2_gC5s255_5_gAAVS1_2

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_C03_C04_C07_C08_C11_gC4s283_3_gC7s301_3_gC8s325_3_gC12s329_3_gAAVS1_3

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_D03_D04_D07_D08_D11_gC4s283_4_gC7s301_4_gC8s325_4_gC12s329_4_gAAVS1_4

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_E03_E04_E07_E08_E11_gC4s283_5_gC7s301_5_gC8s325_5_gC12s329_5_gAAVS1_5

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_F03_F04_F07_F08_F11_gC4s283_6_gC7s301_6_gC8s325_6_gC12s329_6_gROSA26_1

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_G03_G04_G07_G08_G11_gC4s283_7_gC7s301_7_gC8s325_7_gC12s329_7_gROSA26_2

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Edited_PIAL_H03_H04_H07_H11_gC4s283_8_gC7s301_8_gC8s325_8_gROSA26_3

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_A01_A02_A05_A06_A09_A12_CtrlC4s231_1_CtrlC7s257_1_CtrlC6s311_1_CtrlCXs313_1_CtrlC17s297_1_CtrlROSA26_4

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: Danmarks Tekniske Universitet (DTU) NNF Center for Biosustainability

text: public

text: human

text: EXP19006711_Control_PIAL_B01_B02_B05_B06_B09_B12_CtrlC4s231_2_CtrlC7s257_2_CtrlC6s311_2_CtrlCXs313_2_CtrlC17s297_2_CtrlROSA26_5

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_C01_C02_C05_C06_C09_C12_CtrlC4s231_3_CtrlC7s257_3_CtrlC6s311_3_CtrlCXs313_3_CtrlC17s297_3_CtrlDNMT1_21nt

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_D01_D02_D05_D06_D09_D12_CtrlC4s231_4_CtrlC7s257_4_CtrlC6s311_4_CtrlCXs313_4_CtrlC17s297_4_CtrlDNMT1_20nt

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_E01_E02_E05_E06_E09_E12_CtrlC4s231_5_CtrlC7s257_5_CtrlC6s311_5_CtrlCXs313_5_CtrlC17s297_5_CtrlCD19ex2

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_F01_F02_F05_F06_F09_CtrlC4s231_6_CtrlC7s257_6_CtrlC6s311_6_CtrlCXs313_6_CtrlC5s255_1

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_G01_G02_G05_G06_G09_G12_CtrlC4s231_7_CtrlC7s257_7_CtrlC6s311_7_CtrlCXs313_7_CtrlC5s255_2_CtrlTRAC_43_20nt

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_H01_H02_H05_H06_H09_H12_CtrlC4s231_8_CtrlC7s257_8_CtrlC6s311_8_CtrlCXs313_8_CtrlC5s255_3_CtrlC6s311_6_ampl0

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_A03_A04_A07_A08_A10_A11_CtrlC4s283_1_CtrlC7s301_1_CtrlC8s325_1_CtrlC12s329_1_CtrlC5s255_4_CtrlAAVS1_1

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_B03_B04_B07_B08_B10_B11_CtrlC4s283_2_CtrlC7s301_2_CtrlC8s325_2_CtrlC12s329_2_CtrlC5s255_5_CtrlAAVS1_2

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_C03_C04_C07_C08_C11_CtrlC4s283_3_CtrlC7s301_3_CtrlC8s325_3_CtrlC12s329_3_CtrlAAVS1_3

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_D03_D04_D07_D08_D11_CtrlC4s283_4_CtrlC7s301_4_CtrlC8s325_4_CtrlC12s329_4_CtrlAAVS1_4

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_E03_E04_E07_E08_E11_CtrlC4s283_5_CtrlC7s301_5_CtrlC8s325_5_CtrlC12s329_5_CtrlAAVS1_5

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_F03_F04_F07_F08_F11_CtrlC4s283_6_CtrlC7s301_6_CtrlC8s325_6_CtrlC12s329_6_CtrlROSA26_1

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_G03_G04_G07_G08_G11_CtrlC4s283_7_CtrlC7s301_7_CtrlC8s325_7_CtrlC12s329_7_CtrlROSA26_2

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: EXP19006711_Control_PIAL_H03_H04_H07_H11_CtrlC4s283_8_CtrlC7s301_8_CtrlC8s325_8_CtrlROSA26_3

text: Denmark

text: Homo sapiens

text: Homo sapiens


text: FZB

text: public

text: WGS of M. tuberculosis isolates from Peru

text: Peru

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: SC

text: public

text: SC

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collection date

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status