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characteristic: INSDC center name

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text: public

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text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-01-24

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-119278/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-17

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-07-18

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=3,last_infection_date=2022-01-03

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=3,last_infection_date=2022-03-28

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-03-14

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-01-03

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=3,last_infection_date=2022-01-24

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-12-21

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-02-07

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-12-20

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-279721/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_date=2022-02-14

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-02-28

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-516403/2022

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-199861/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-03-07

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2021-12-13

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-01-31

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-01-17

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-24

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-01-03

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Susceptible

characteristic: SRA accession

characteristic: ST

text: Clinical

text: Faeces

text: Human

text: Human

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: collection date

text: OHEJP

characteristic: description

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Susceptible

text: Clinical

text: Faeces

text: Human

text: Human

text: OHEJP

text: Portugal

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: public

text: Susceptible

text: Clinical

text: Blood

text: Human

text: Human

text: OHEJP

text: Portugal

characteristic: geographic location (country and/or sea)

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Derby


characteristic: ENA-FIRST-PUBLIC

text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: London


characteristic: ENA-LAST-UPDATE

text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup


characteristic: External Id

text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Brandenburg


text: public

text: Susceptible

characteristic: SRA accession

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: public

text: Susceptible

characteristic: ST

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic Typhimurium


text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

characteristic: Submitter Id

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Rissen


text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

characteristic: collection date

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

characteristic: description

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Give


text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Panama

characteristic: serovar


characteristic: INSDC center name

text: public

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Bredeney


characteristic: INSDC first public

text: public

text: Susceptible

text: Environment

text: Water

text: Environment

text: Water

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Rissen


characteristic: INSDC last update

text: public

text: Susceptible

text: Environment

text: Water

text: Environment

text: Water

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Poona


text: public

characteristic: INSDC status

text: Susceptible

text: Animal

text: Faeces

text: Animal

text: Wild Animal

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Bovismorbificans


text: public

text: Susceptible

text: Environment

text: Water

text: Environment

text: Water

text: OHEJP

text: Portugal

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Saintpaul


text: public

text: Susceptible

text: Clinical

text: Faeces

text: Human

text: Human

text: Surveillance

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: London

characteristic: title


text: public

text: Susceptible

text: Food

text: Meat

text: Livestock

text: Pigs

text: OHEJP

text: Portugal

characteristic: geographic location (country and/or sea)

text: Salmonella enterica

text: Salmonella enterica

text: London


characteristic: ENA-CHECKLIST

text: public

text: MDR

text: Food

text: Meat

text: Livestock

text: Pigs

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: public

text: MDR

text: Food

text: Meat

text: Livestock

text: Pigs

text: OHEJP

text: Portugal

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: aquatic biome

characteristic: broad-scale environmental context

text: JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER

characteristic: collected by

text: University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology

characteristic: collecting institution

unit: m

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

text: coral fringing reef, slope, cryptic habitat, on coral reef rock (calcium carbonate)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: sponge metagenome

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: ce663349-4a19-4eeb-92ad-3b6e6ffcf820-asg-metagenome

characteristic: tolid


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Nitrosopumilus sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: Nitrosopumilus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: f6d3fc49-5f6e-467d-863d-180e82c413c8-asg-MAGScoT_cleanbin_000058


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: Cytophagales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: Cytophagales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 586810aa-0840-4cac-9dc7-0cbe4163a6c9-asg-MAGScoT_cleanbin_000056


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Bdellovibrionales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: Bdellovibrionales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: a44fc57d-37dc-49cf-9167-f0bc21d5692f-asg-MAGScoT_cleanbin_000031


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: Oligoflexales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: Oligoflexales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: aed22c17-c601-4c35-975c-5988f300943d-asg-MAGScoT_cleanbin_000051


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Phototrophicaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: Phototrophicaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 79e02d6a-4834-452c-970a-f381251df729-asg-MAGScoT_cleanbin_000028


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: Dehalococcoidia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 2abad85b-8946-4581-85bb-645cfe53a32d-asg-MAGScoT_cleanbin_000060


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Synechococcus sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: uncultured Synechococcus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 5dd610cf-d331-4f57-a552-cc2e220fee70-asg-MAGScoT_cleanbin_000021


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Synechococcus sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: uncultured Synechococcus sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 11a3e9c6-5fef-47a3-90c7-53a024923ab5-asg-MAGScoT_cleanbin_000038


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Synechococcus sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: uncultured Synechococcus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: c1aff6e3-5cde-4e73-8ab8-2d2137880c93-asg-MAGScoT_cleanbin_000059


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

text: coral fringing reef, slope, cryptic habitat, on coral reef rock (calcium carbonate)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: Candidatus Latescibacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: Candidatus Latescibacteria bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: b472bd0c-9c0c-4f52-b361-ed2b7ac91c5b-asg-MAGScoT_cleanbin_000024


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Nitrospirales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: Nitrospirales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: c7b5eedb-13e0-4fb8-956b-98db6d3d7eaa-asg-MAGScoT_cleanbin_000015


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: Paracoccaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: Paracoccaceae bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: 7a80bcd0-1ddd-490e-badb-3c315a80fbf8-asg-MAGScoT_cleanbin_000003


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: a00b8953-4c8f-4888-b533-7b8bcc872d48-asg-MAGScoT_cleanbin_000061


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: Bryobacterales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: Bryobacterales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 86978798-6d99-423e-8588-835106a9727b-asg-MAGScoT_cleanbin_000018


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Chondrilla caribensis

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Thermoanaerobaculia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: benificial

text: Thermoanaerobaculia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 1ba308f5-42e2-4878-81ff-2dc7ade272f8-asg-MAGScoT_cleanbin_000034


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Chondrilla caribensis

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Chondrilla caribensis

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

text: Vicinamibacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: benificial

characteristic: relationship

characteristic: sample derived from

text: Vicinamibacteria bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 188da4bf-f1c8-4219-a28b-c38109137c31-asg-MAGScoT_cleanbin_000026