characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'rust'

text: FIN

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'rust'

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


status: PUBLIC

tag: attribute

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

text: Gregoire Vernaz | Richard Zatha | Emilia Santos

text: University of Cambridge | University of Malawi | University of Cambridge

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

unit: DD

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'mauve'

characteristic: organism

text: FIN

characteristic: organism part

text: Tropheops sp. 'mauve'

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Cynotilapia aurifrons

text: FIN

characteristic: project name

characteristic: sample derived from

text: Cynotilapia aurifrons

text: MALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'deep'

text: FIN

text: Tropheops sp. 'deep'

text: FEMALE

text: NOT APPLICABLE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'band'

characteristic: organism

text: FIN

characteristic: organism part

text: Tropheops sp. 'band'

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'olive'

text: FIN

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'olive'

text: MALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Kande Island

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'weed'

text: FIN

text: Tropheops sp. 'weed'

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Kande Island

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

characteristic: organism

text: FIN

characteristic: organism part

text: Maylandia callainos

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Kande Island

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'mauve'

text: FIN

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'mauve'

text: MALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Kande Island

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Protomelas sp. 'steveni black belly'

text: FIN

text: Protomelas sp. 'steveni black belly'

text: NOT COLLECTED

text: NOT APPLICABLE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay | Market

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Diplotaxodon limnothrissa

characteristic: organism

text: FIN

characteristic: organism part

text: Diplotaxodon limnothrissa

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: zebra mbuna

characteristic: common name

text: Malawi

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

text: FIN

characteristic: project name

characteristic: sample derived from

text: Maylandia zebra

text: MALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'olive'

characteristic: organism

text: FIN

text: Tropheops sp. 'olive'

text: FEMALE

text: NOT APPLICABLE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

text: FIN

characteristic: organism part

text: Maylandia callainos

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'mauve'

text: FIN

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'mauve'

text: FEMALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Tropheops sp. 'olive'

characteristic: organism

text: FIN

text: Tropheops sp. 'olive'

text: NOT COLLECTED

text: NOT APPLICABLE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'deep'

text: FIN

characteristic: organism part

text: Tropheops sp. 'deep'

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Tropheops sp. 'rust'

text: FIN

characteristic: project name

characteristic: sample derived from

text: Tropheops sp. 'rust'

text: MALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: not collected

text: not collected

text: Lake Malawi | Nkhata Bay

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Pseudotropheus williamsi

characteristic: organism

text: FIN

text: Pseudotropheus williamsi

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF NOTTINGHAM

text: not collected

characteristic: collection date

text: Cochlearia pyrenaica leaf sample

characteristic: description

text: Austria

text: growth chamber

characteristic: isolation and growth condition

text: Cochlearia pyrenaica

text: seedling

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Cochlearia pyrenaica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: Submitter Id

text: not collected

text: Cochlearia pyrenaica leaf sample

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

text: Cochlearia pyrenaica

text: seedling

text: soil

text: leaf

text: diploid

text: Cochlearia pyrenaica


text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not collected

text: Cochlearia pyrenaica leaf sample

text: Spain

text: growth chamber

text: Cochlearia pyrenaica

characteristic: organism

text: seedling

text: soil

text: leaf

text: diploid

text: Cochlearia pyrenaica

characteristic: title


text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

text: not collected

characteristic: collection date

text: Cochlearia pyrenaica leaf sample

characteristic: description

text: France

text: growth chamber

characteristic: isolation and growth condition

text: Cochlearia pyrenaica

text: seedling

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

text: diploid

text: Cochlearia pyrenaica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

text: not collected

text: Cochlearia groenlandica leaf sample

text: Iceland

text: growth chamber

text: Cochlearia groenlandica

text: seedling

text: soil

text: leaf

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Cochlearia groenlandica


text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: not collected

text: Cochlearia aestuaria leaf sample

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

text: Cochlearia aestuaria

text: seedling

text: soil

text: leaf

text: diploid

text: Cochlearia aestuaria


text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

characteristic: collection date

text: Cochlearia excelsa leaf sample

text: Austria

text: growth chamber

text: Cochlearia excelsa

characteristic: organism

text: seedling

text: soil

text: leaf

text: diploid

text: Cochlearia excelsa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF NOTTINGHAM

text: public

text: not collected

text: Cochlearia pyrenaica leaf sample

characteristic: description

text: United Kingdom

text: growth chamber

characteristic: isolation and growth condition

text: Cochlearia pyrenaica

text: seedling

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

text: diploid

text: Cochlearia pyrenaica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: Cochlearia anglica leaf sample

text: United Kingdom

text: growth chamber

text: Cochlearia anglica

text: seedling

text: soil

text: leaf

characteristic: plant structure

text: octoploid

characteristic: ploidy

text: Cochlearia anglica


text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: not collected

text: Cochlearia tatrae leaf sample

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

text: Cochlearia tatrae

text: seedling

text: soil

text: leaf

text: hexaploid

text: Cochlearia tatrae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

text: not collected

characteristic: collection date

text: Cochlearia islandica leaf sample

text: Iceland

text: growth chamber

text: Cochlearia islandica

characteristic: organism

text: seedling

text: soil

text: leaf

text: diploid

text: Cochlearia islandica

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

text: not collected

text: Cochlearia officinalis leaf sample

characteristic: description

text: United Kingdom

text: growth chamber

characteristic: isolation and growth condition

text: Cochlearia officinalis subsp. officinalis

text: seedling

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

text: tetraploid


Avedøre Renseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Avedøre Renseanlæg_2023-06-13

tag: Namespace:Statens Serum Institut

text: building

characteristic: broad-scale environmental context

unit: m

characteristic: depth

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

text: Severe acute respiratory syndrome coronavirus 2

text: SARS-CoV-2 wastewater Illumina sequencing, Denmark

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Avedøre Renseanlæg_2023-06-13


Damhusåen Renseanlæg_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

characteristic: SRA accession

text: Damhusåen Renseanlæg_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wastewater treatment plant

characteristic: organism

text: Illumina

text: Damhusåen Renseanlæg_2023-06-13

characteristic: title


Egå Renseanlæg_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Egå Renseanlæg_2023-06-13

text: building

text: wastewater

text: Denmark

text: wastewater treatment plant

text: Illumina

text: Egå Renseanlæg_2023-06-13


Ejby Mølle Renseanlæg_2023-06-13

text: Statens Serum Institut

text: public

text: Ejby Mølle Renseanlæg_2023-06-13

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Ejby Mølle Renseanlæg_2023-06-13


Esbjerg Renseanlæg Vest_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

characteristic: SRA accession

text: Esbjerg Renseanlæg Vest_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

text: wastewater treatment plant

text: Illumina

text: Esbjerg Renseanlæg Vest_2023-06-13


Fredericia Spildevand_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

text: public

text: Fredericia Spildevand_2023-06-13

text: building

text: wastewater

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wastewater treatment plant

characteristic: organism

text: Illumina

text: Fredericia Spildevand_2023-06-13

characteristic: title


Herning Renseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Herning Renseanlæg_2023-06-13

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

text: Denmark

text: wastewater treatment plant

text: Illumina

text: Herning Renseanlæg_2023-06-13


Hillerød Renseanlæg_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

text: Hillerød Renseanlæg_2023-06-13

text: building

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Hillerød Renseanlæg_2023-06-13


Hjørring Renseanlæg_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

text: public

characteristic: SRA accession

text: Hjørring Renseanlæg_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

text: wastewater treatment plant

text: Illumina

text: Hjørring Renseanlæg_2023-06-13


Holbæk Renseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Holbæk Renseanlæg_2023-06-13

text: building

text: wastewater

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wastewater treatment plant

characteristic: organism

text: Illumina

text: Holbæk Renseanlæg_2023-06-13

characteristic: title


Horsens Centralrenseanlæg_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Horsens Centralrenseanlæg_2023-06-13

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

text: Denmark

text: wastewater treatment plant

text: Illumina

text: Horsens Centralrenseanlæg_2023-06-13


Køge-Egnens Renseanlæg_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

text: public

text: Køge-Egnens Renseanlæg_2023-06-13

text: building

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Køge-Egnens Renseanlæg_2023-06-13


Kolding Renseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Kolding Renseanlæg_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

text: wastewater treatment plant

text: Illumina

text: Kolding Renseanlæg_2023-06-13


Lynetten Nordre_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

text: Lynetten Nordre_2023-06-13

text: building

text: wastewater

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wastewater treatment plant

characteristic: organism

text: Illumina

text: Lynetten Nordre_2023-06-13

characteristic: title


Lynetten Søndre_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Lynetten Søndre_2023-06-13

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

text: Denmark

text: wastewater treatment plant

text: Illumina

text: Lynetten Søndre_2023-06-13


Mariagerfjord Renseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Mariagerfjord Renseanlæg_2023-06-13

text: building

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Mariagerfjord Renseanlæg_2023-06-13


Marselisborg Renseanlæg_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

characteristic: SRA accession

text: Marselisborg Renseanlæg_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

text: wastewater treatment plant

text: Illumina

text: Marselisborg Renseanlæg_2023-06-13


Mosede Renseanlæg_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

text: public

text: Mosede Renseanlæg_2023-06-13

text: building

text: wastewater

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wastewater treatment plant

characteristic: organism

text: Illumina

text: Mosede Renseanlæg_2023-06-13

characteristic: title


Måløv Renseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Måløv Renseanlæg_2023-06-13

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

text: Denmark

text: wastewater treatment plant

text: Illumina

text: Måløv Renseanlæg_2023-06-13


Næstved Renseanlæg_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

text: Næstved Renseanlæg_2023-06-13

text: building

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Næstved Renseanlæg_2023-06-13


Nordvest Renseanlæg_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

text: public

characteristic: SRA accession

text: Nordvest Renseanlæg_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

text: wastewater treatment plant

text: Illumina

text: Nordvest Renseanlæg_2023-06-13


Ringsted Centralrenseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ringsted Centralrenseanlæg_2023-06-13

text: building

text: wastewater

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wastewater treatment plant

characteristic: organism

text: Illumina

text: Ringsted Centralrenseanlæg_2023-06-13

characteristic: title


Slagelse Renseanlæg_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Slagelse Renseanlæg_2023-06-13

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

text: Denmark

text: wastewater treatment plant

text: Illumina

text: Slagelse Renseanlæg_2023-06-13


Søholt Renseanlæg_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

text: public

text: Søholt Renseanlæg_2023-06-13

text: building

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Søholt Renseanlæg_2023-06-13


Vejle Centralrenseanlæg_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Vejle Centralrenseanlæg_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

text: wastewater treatment plant

text: Illumina

text: Vejle Centralrenseanlæg_2023-06-13


Viby Renseanlæg_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

text: Viby Renseanlæg_2023-06-13

text: building

text: wastewater

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wastewater treatment plant

characteristic: organism

text: Illumina

text: Viby Renseanlæg_2023-06-13

characteristic: title


Åby Renseanlæg_2023-06-13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Åby Renseanlæg_2023-06-13

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

text: Denmark

text: wastewater treatment plant

text: Illumina

text: Åby Renseanlæg_2023-06-13


Aalborg Renseanlæg Vest_2023-06-13

text: Statens Serum Institut

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Aalborg Renseanlæg Vest_2023-06-13

text: building

text: wastewater

characteristic: environmental medium

text: Denmark

text: wastewater treatment plant

characteristic: local environmental context

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Aalborg Renseanlæg Vest_2023-06-13


Aalborg Renseanlæg Øst_2023-06-13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut

text: public

characteristic: SRA accession

text: Aalborg Renseanlæg Øst_2023-06-13

characteristic: Submitter Id

text: building

characteristic: collection date

text: wastewater

text: Denmark

characteristic: geographic location (country and/or sea)

text: wastewater treatment plant

text: Illumina

text: Aalborg Renseanlæg Øst_2023-06-13


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: mESC

text: EpiLC

text: not collected

text: house mouse

characteristic: common name

text: Protocols: Naive murine embryonic stem cells (mESC) were derived freshly (FVB or mixed 129/B6) and were routinely cultured on gelatin-coated plates in t2i/L media: NDiff (N2B27) (Takara #y40002) supplemented with titrated 2i (0.2 �M PD0325901 and 3 �M CHIR 99021), 1,000 U/ml leukaemia inhibitory factor (LIF), 1% FBS, 1% penicillin streptomycin and maintained in humidified atmosphere at 37C and 5% CO2. Cells were passaged every 2 days by dissociation with TrypLE and medium was changed daily. To induce epiblast-like cell (EpiLC) differentiation, naive mouse ESCs were seeded on fibronectin-coated plates in NDiff (N2B27) (Takara #y40002) supplemented with 20 ng/ml ActivinA (PeproTech #120-14P), 12 ng/ml bFGF (PeproTech #450-33), 1% knockout serum replacement (Thermo Fisher #10828010) and 1% penicillin streptomycin. Cell were harvested ~40 hours after EpiLC induction. RNA-sequencing of polyA RNA from mouse Embryonic Stem Cells. Total RNA was isolated using the Monarch Total RNA Miniprep Kit (NEB #T2010S), including gDNA removal step and on-column DNase I digestion. Total RNA was quantified using Qubit II and quality assessed with high-sensitivity RNA Screen Tape (Agilent 5067-5579). Stranded mRNA-seq libraries were prepared with the NEBNext RNA Ultra II kit (input: 350 ng of total RNA) following the manufacturer's instructions.

characteristic: description

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: FVB

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: mESC

text: ESC

text: not collected

text: house mouse

text: targeted mutation

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mESC

text: ESC

text: not collected

characteristic: collection date

text: house mouse

text: targeted mutation

text: homozygous mll2[Y2602A]

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: mESC

text: EpiLC

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: targeted mutation

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: ArrayExpress

text: mESC

text: ESC

text: not collected

text: house mouse

text: Protocols: Naive murine embryonic stem cells (mESC) were derived freshly (FVB or mixed 129/B6) and were routinely cultured on gelatin-coated plates in t2i/L media: NDiff (N2B27) (Takara #y40002) supplemented with titrated 2i (0.2 uM PD0325901 and 3 uM CHIR 99021), 1,000 U/ml leukaemia inhibitory factor (LIF), 1% FBS, 1% penicillin streptomycin and maintained in humidified atmosphere at 37C and 5% CO2. Cells were passaged every 2 days by dissociation with TrypLE and medium was changed daily. RNA-sequencing of total RNA from mouse Embryonic Stem Cells. Total RNA was isolated using the Monarch. Total RNA Miniprep Kit (NEB #T2010S), including gDNA removal step and on-column DNase I digestion. Total RNA was quantified using Qubit II and quality assessed with high-sensitivity RNA Screen Tape (Agilent 5067-5579). rRNA was depleted using the NEBNext rRNA Depletion Kit v2 (Human/Mouse/Rat) (cat.no. E7400X) Stranded RNA-seq libraries were prepared with the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (cat.no. E7760L) (input: 500 ng of total RNA) following the manufacturer's instructions.

text: gene knock out

text: Wild type genotype

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: FVB

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: mESC

text: ESC

text: not collected

text: house mouse

text: gene knock out

text: homozygous setd2 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


text: public

characteristic: SRA accession

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Denmark

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

text: public

text: Danish Covid-19 Genome Consortium

text: Denmark

text: not provided

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


E-MTAB-13430:Sample 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13430:Sample 1

tag: Namespace:The First Hospital of China Medical University

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Norway rat

characteristic: common name

text: Protocols: Rat lumbar DRG (L4-L5) were collected at day14 after the initiation of paclitaxel or vehicle treatments (n=4 rats). Specifically, DRG tissue were rapidly removed under isoflurane anesthesia and snap frozen. First, we separated the spine at L4-L5 segment. The dorsal skin and musculature were cut either side of the spine. The most inferior ribs were used as a landmark. T13 was located just inferior to the ribs, and its next section was lumbar 1. The iliac crest was also used as an anatomical marker for the location of the 4th and 5th lumbar spine. Next, we opened the spine, separated the spinal cord, then opened the vertebral foramina of both sides, and carefully pulled out the DRGs. Total RNA was extracted from rat L4-5 DRGs using Trizol reagent kit (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol. RNA quality was assessed on an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA, USA) and checked using RNase free agarose gel electrophoresis. After total RNA was extracted, eukaryotic mRNA was enriched by Oligo(dT) beads, while prokaryotic mRNA was enriched by removing rRNA by Ribo-Zero TM Magnetic Kit (Epicentre, Madison, WI, USA). The enriched mRNA was fragmented into short fragments using fragmentation buffer and reverse transcription into cDNA with random primers. Second-strand cDNA were synthesized by DNA polymerase I, RNase H, dNTP and buffer. Then the cDNA fragments were purified with QiaQuick PCR extraction kit (Qiagen, Venlo, The Netherlands), end repaired, poly(A) added, and ligated to Illumina sequencing adapters.

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: dorsal root ganglion

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

characteristic: stimulus

text: SD

characteristic: strain

text: Sample 1


E-MTAB-13430:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The First Hospital of China Medical University

characteristic: INSDC center name

text: public

text: E-MTAB-13430:Sample 2

text: ArrayExpress

text: not collected

text: Norway rat

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: dorsal root ganglion

text: Rattus norvegicus

text: male

text: SD

text: Sample 2

characteristic: title


E-MTAB-13430:Sample 3

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13430:Sample 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Norway rat

characteristic: common name

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: dorsal root ganglion

text: Rattus norvegicus

text: male

text: SD

text: Sample 3


E-MTAB-13430:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-13430:Sample 4

text: ArrayExpress

text: not collected

text: Norway rat

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: dorsal root ganglion

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

characteristic: stimulus

text: SD

characteristic: strain

text: Sample 4


E-MTAB-13430:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13430:Sample 5

text: ArrayExpress

text: not collected

text: Norway rat

text: paclitaxel-induced peripheral neuropathy

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: dorsal root ganglion

text: Rattus norvegicus

text: male

text: paclitaxel treatment

text: SD

text: Sample 5

characteristic: title


E-MTAB-13430:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13430:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Norway rat

characteristic: common name

text: wild type genotype

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: dorsal root ganglion

text: Rattus norvegicus

text: male

text: paclitaxel treatment

text: SD

text: Sample 6


E-MTAB-13430:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-13430:Sample 7

text: ArrayExpress

text: not collected

text: Norway rat

characteristic: description

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: dorsal root ganglion

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: paclitaxel treatment

characteristic: stimulus

text: SD

characteristic: strain

text: Sample 7


E-MTAB-13430:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13430:Sample 8

text: ArrayExpress

text: not collected

text: Norway rat

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: dorsal root ganglion

text: Rattus norvegicus

text: male

text: paclitaxel treatment

text: SD

text: Sample 8

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Marine Microbiology

characteristic: Submitter Id

text: marine biome [ENVO:00000447]

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: common name

characteristic: depth

text: seawater was pumped into a 500 L carboy, brought ashore, subsequently filtered through 10 μm - and 3 μm - pore-size polycarbonate filters and finally filtered onto 0.2 μm pore-size polyethersulfone filter, frozen at -80°C. This sample refers to the 3-10 μm fraction

text: coastal sea water [ENVO:00002150]

characteristic: environmental medium

text: North Sea

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial feature [ENVO:00002150]

characteristic: local environmental context

text: marine metagenome

text: Particle-attached (3-10µm) metagenomes from 2018 Helgoland Spring Bloom with PacBio sequencing

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Max Planck Institute for Marine Microbiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: marine biome [ENVO:00000447]

characteristic: description

text: coastal sea water [ENVO:00002150]

text: North Sea

characteristic: geographic location (country and/or sea)

text: metagenome

text: microbial feature [ENVO:00002150]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: title

text: water


characteristic: External Id

text: University of Manchester

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Manchester

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

text: Microdissected mouse branchial arch

text: United Kingdom

text: Mus musculus

text: Mus musculus


text: Statens Serum Institut

text: public

text: building

characteristic: broad-scale environmental context

characteristic: depth

text: wastewater

characteristic: environmental medium

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: airport

characteristic: local environmental context

text: Airport SARS-CoV-2 wastewater Illumina sequencing, Denmark

characteristic: project name

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Universitat de Barcelona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Universitat de Barcelona

text: Individual n1

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Barcelona

characteristic: geographic location (region and locality)

text: 41.375606, 2.181415

text: Styela plicata

text: Styela plicata


characteristic: External Id

text: Statens Serum Institut

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: building

characteristic: broad-scale environmental context

characteristic: collection date

text: wastewater

text: Denmark

text: wastewater treatment plant

characteristic: organism

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

text: public

text: Jaime Bosch

text: Muse Nacional Ciencias Naturales MADRID

characteristic: collecting institution

text: midwife toad

characteristic: common name

characteristic: elevation

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Guadarrama National Park | Madrid

text: NOT COLLECTED

characteristic: habitat

text: Jaime Bosch

text: IMIB

text: larva

characteristic: lifestage

text: Alytes obstetricans

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Alytes obstetricans

text: NOT APPLICABLE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jaime Bosch

text: Muse Nacional Ciencias Naturales MADRID

characteristic: collection date

text: midwife toad

text: Spain

characteristic: geographic location (country and/or sea)

text: Guadarrama National Park | Madrid

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: Jaime Bosch

text: IMIB

text: egg

text: Alytes obstetricans

characteristic: organism

text: WHOLE ORGANISM

text: Alytes obstetricans

text: NOT APPLICABLE

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

text: public

text: Jaime Bosch

text: Muse Nacional Ciencias Naturales MADRID

characteristic: collecting institution

text: midwife toad

characteristic: common name

characteristic: elevation

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Guadarrama National Park | Madrid

text: NOT COLLECTED

characteristic: habitat

text: Jaime Bosch

text: IMIB

text: adult

characteristic: lifestage

text: Alytes obstetricans

text: EGG

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Alytes obstetricans

text: FEMALE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Active Motif # 39034

characteristic: antibody source

text: purified polyclonal

characteristic: antibody type

text: ArrayExpress

characteristic: broker name

text: mESC

text: not collected

characteristic: collection date

text: house mouse

text: Protocols: Naive murine embryonic stem cells (mESC) were derived freshly (FVB or mixed 129/B6) and were routinely cultured on gelatin-coated plates in t2i/L media: NDiff (N2B27) (Takara #y40002) supplemented with titrated 2i (0.2 �M PD0325901 and 3 �M CHIR 99021), 1,000 U/ml leukaemia inhibitory factor (LIF), 1% FBS, 1% penicillin streptomycin and maintained in humidified atmosphere at 37C and 5% CO2. Cells were passaged every 2 days by dissociation with TrypLE and medium was changed daily. This protocol has been optimised from Skene and Henikoff, Elife, 2017 to detect interaction between DNA and histone modifications. Briefly, fresh cells are harvested, permeabilised, bound to concanavallin magnetic beads and incubated with the antibody for the modification of interest. Samples were then incubated with pA-MNase to cut the DNA side of the bound antibody and the DNA fragments were eluted and subjected to size selection. Finally DNA library was generated with NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB #E7645S).

characteristic: description

text: targeted mutation

characteristic: genetic modification

text: homozygous mll2[Y2602A]

characteristic: genotype

text: not collected

characteristic: immunoprecipitate

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: FVB

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

text: Millipore # 07-449

text: purified polyclonal

text: ArrayExpress

text: mESC

text: not collected

text: house mouse

characteristic: common name

text: targeted mutation

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: FVB

characteristic: title


text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Millipore # 07-449

characteristic: antibody source

text: purified polyclonal

characteristic: antibody type

text: ArrayExpress

characteristic: broker name

text: mESC

text: not collected

characteristic: collection date

text: house mouse

text: targeted mutation

text: homozygous mll2[Y2602A]

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: Diagenode C15410003-50

text: purified polyclonal

text: ArrayExpress

text: mESC

text: not collected

text: house mouse

characteristic: description

text: targeted mutation

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: immunoprecipitate

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: FVB

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Diagenode C15410003-50

text: purified polyclonal

text: ArrayExpress

text: mESC

text: not collected

text: house mouse

characteristic: common name

text: targeted mutation

text: homozygous mll2[Y2602A]

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: FVB

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Active Motif # 39034

characteristic: antibody source

text: purified polyclonal

characteristic: antibody type

text: ArrayExpress

characteristic: broker name

text: mESC

text: not collected

characteristic: collection date

text: house mouse

text: targeted mutation

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: FVB


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Regional Virus Laboratory, Belfast Health and Social Care Trust; and: Genomics Core Technology Unit, Queens University Belfast.

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Regional Virus Laboratory, Belfast Health and Social Care Trust; and: Genomics Core Technology Unit, Queens University Belfast.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Ohio State University

text: public

text: ena-SAMPLE-TAB-16-10-2023-15:11:43:251-1431

tag: Namespace:The Ohio State University

characteristic: collection date

text: human

characteristic: common name

text: CEM-SS WT infection

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Natural History Museum

text: public

tag: Namespace:Natural History Museum

text: specimen

text: Australia

text: Tachystola hemisema

text: Tachystola hemisema

text: voucher in NHMUK London


E-MTAB-13450:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13450:Sample 1

tag: Namespace:Evolution and maintenance of circular chromosomes,Genome biology department, Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universite-Paris-Sud, Universite Paris-Saclay, Gif-sur-Yvette,France,

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: Genomic DNA was collected after 10h (T10) incubation with 0.2% (wt/vol) L-Arabinose. Chromosomal DNA was extracted using the Sigma GenElute® bacterial genomic DNA kit Genomic library created according to Illumina’s protocol

text: not collected

text: not applicable

characteristic: isolate

text: Vibrio cholerae

text: Vibrio cholerae

text: whole organism

characteristic: organism part

text: Vibrio cholerae

characteristic: strain

text: Sample 1


Budvirus-genome

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Budvirus-genome

tag: Namespace:Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology

characteristic: Submitter Id

text: Single, validated, contiguous sequence per replicon without gaps or ambiguities, with extensive manual review and editing to annotate putative gene functions and transcriptional units

characteristic: UViG assembly quality

text: CANU v.2.3

characteristic: assembly software

text: freshwater biome

characteristic: broad-scale environmental context

text: Cultivation and Genomics of a Giant Virus infecting the Cryptophyte Rhodomonas

text: independent sequence (UViG)

characteristic: detection type

text: water

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater Rimov Reservoir

text: freshwater lake

characteristic: local environmental context

text: aquatic viral metagenome

characteristic: metagenomic source

text: Imitervirales sp.

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

characteristic: project name

characteristic: sample derived from

text: Imitervirales sp.

text: other

characteristic: source of UViGs

text: Budvirus: A Giant Virus infecting the Cryptophyte Rhodomonas

text: CheckV v.1.0.1; database v.1.5

characteristic: viral identification software

text: filtration

characteristic: virus enrichment approach


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: aquatic biome

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: collecting institution

characteristic: collection date

text: JUDRED strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA

characteristic: depth

text: ciliate culture

text: USA

characteristic: geographic location (country and/or sea)

text: RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND

characteristic: geographic location (region and locality)

text: salt marsh sediment

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Plagiopyla sp. strain JUDRED

characteristic: host scientific name

characteristic: host taxid

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: marine salt marsh biome

text: ciliate metagenome

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: USA | RHODE ISLAND | NARRAGANSETT | POINT JUDITH POND

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: hand collected into a 50 ml tube

characteristic: sample collection device or method

text: ciliate metagenome

text: NOT PROVIDED

text: aed71470-3746-491f-8943-7c3cddff6139-asg-metagenome

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: salt marsh sediment

text: vegetative cell

text: Plagiopyla sp. strain JUDRED

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Bacteroidales bacterium

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: hand collected into a 50 ml tube

characteristic: sample derived from

text: Bacteroidales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

text: taxonomic novelty determined using RED

text: 7d96b06a-ec04-4cde-93f2-6e267c81e772-asg-MAGScoT_cleanbin_000063


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: depth

text: ciliate culture

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: salt marsh sediment

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Plagiopyla sp. strain JUDRED

characteristic: host scientific name

characteristic: host taxid

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

text: ciliate metagenome

text: Labilibaculum euxinus

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: hand collected into a 50 ml tube

characteristic: sample collection device or method

text: Labilibaculum euxinus

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 6a9080db-60cb-4faf-ba04-1360ada15005-asg-MAGScoT_cleanbin_000070


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

characteristic: broad-scale environmental context

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: salt marsh sediment

text: vegetative cell

text: Plagiopyla sp. strain JUDRED

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Draconibacterium sp.

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: hand collected into a 50 ml tube

characteristic: sample derived from

text: uncultured Draconibacterium sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: c35d3b2b-9276-40e1-97c9-10e95cd87afa-asg-MAGScoT_cleanbin_000017


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: depth

text: ciliate culture

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: salt marsh sediment

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Plagiopyla sp. strain JUDRED

characteristic: host scientific name

characteristic: host taxid

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

text: ciliate metagenome

text: uncultured Draconibacterium sp.

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: hand collected into a 50 ml tube

characteristic: sample collection device or method

text: uncultured Draconibacterium sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: b018b89d-7af5-4a11-9a88-28b118e61795-asg-MAGScoT_cleanbin_000068


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

characteristic: broad-scale environmental context

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: salt marsh sediment

text: vegetative cell

text: Plagiopyla sp. strain JUDRED

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Sulfurovaceae bacterium

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: hand collected into a 50 ml tube

characteristic: sample derived from

text: Sulfurovaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: ad9a0d32-1270-49a6-b6ab-7693ffb8fe1b-asg-MAGScoT_cleanbin_000072


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: depth

text: ciliate culture

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: salt marsh sediment

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Plagiopyla sp. strain JUDRED

characteristic: host scientific name

characteristic: host taxid

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

text: ciliate metagenome

text: uncultured Denitrovibrio sp.

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: hand collected into a 50 ml tube

characteristic: sample collection device or method

text: uncultured Denitrovibrio sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 13b127db-e44e-4d14-98e7-48010ea5fab2-asg-MAGScoT_cleanbin_000066


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

characteristic: broad-scale environmental context

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: salt marsh sediment

text: vegetative cell

text: Plagiopyla sp. strain JUDRED

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Maridesulfovibrio sp.

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: hand collected into a 50 ml tube

characteristic: sample derived from

text: Maridesulfovibrio sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 193f683b-19ab-4efb-81d9-8b4726c9d081-asg-MAGScoT_cleanbin_000077


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: depth

text: ciliate culture

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: salt marsh sediment

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Plagiopyla sp. strain JUDRED

characteristic: host scientific name

characteristic: host taxid

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

text: ciliate metagenome

text: Geopsychrobacteraceae bacterium

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: hand collected into a 50 ml tube

characteristic: sample collection device or method

text: Geopsychrobacteraceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 7677d553-ad3e-44f2-bae1-2b1234b25256-asg-MAGScoT_cleanbin_000038


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

characteristic: broad-scale environmental context

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: JUDRED strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA

text: ciliate culture

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: salt marsh sediment

text: vegetative cell

text: Plagiopyla sp. strain JUDRED

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Myxococcota bacterium

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: hand collected into a 50 ml tube

characteristic: sample derived from

text: Myxococcota bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: b2b409b2-8163-46b7-a739-1bda0b4eaed4-asg-MAGScoT_cleanbin_000061


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: depth

text: ciliate culture

text: USA

characteristic: geographic location (country and/or sea)

text: RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND

characteristic: geographic location (region and locality)

text: salt marsh sediment

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Plagiopyla sp. strain JUDRED

characteristic: host scientific name

characteristic: host taxid

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

text: ciliate metagenome

text: Planctomycetota bacterium

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: USA | RHODE ISLAND | NARRAGANSETT | POINT JUDITH POND

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: hand collected into a 50 ml tube

characteristic: sample collection device or method

text: Planctomycetota bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 9f53dfd5-995e-4c4d-a4cf-5f9678733dec-asg-MAGScoT_cleanbin_000055


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF RHODE ISLAND

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

text: aquatic biome

characteristic: broad-scale environmental context

text: JOHANA ROTTEROVA

text: UNIVERSITY OF RHODE ISLAND

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: salt marsh sediment

text: vegetative cell

text: Plagiopyla sp. strain JUDRED

text: ANNA SCHRECENGOST

text: UNIVERSITY OF RHODE ISLAND

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Plagiopyla sp. strain JUDRED

text: marine salt marsh biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Planctomycetota bacterium

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: hand collected into a 50 ml tube

characteristic: sample derived from

text: Planctomycetota bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 79c35eb8-f565-4be3-a687-fe7fb401144e-asg-MAGScoT_cleanbin_000073