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text: Trypanosoma brucei

text: Mu


text: public

characteristic: SRA accession

text: 83913:be78a164-d449-4c3a-a8be-8b8a720d9a88

tag: Namespace:IOW Leibniz-Institut fur Ostseeforschung Warnemuende

characteristic: Submitter Id

text: temperate mariginal sea biome [ENVO:01000856]

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: water sample collected at station EMB201_12 (water pumping system of the research vessel) at 4m depth size fraction >= 0.22 micro m

text: sea water [ENVO:00002149]

text: water

characteristic: environmental package

text: yes

text: Baltic Sea

text: Landsort Deep

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]|sea surface layer [ENVO:01001581]

characteristic: local environmental context

text: seawater metagenome

text: FWD:CAGCMGCCGCGGTAA REV:GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: 16S rRNA gene amplicon sequences from suspended particulate matter (central Baltic Sea)

characteristic: project name

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOW Leibniz-Institut fur Ostseeforschung Warnemuende

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 83912:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: broad-scale environmental context

text: GFBIO

text: water sample collected at station EMB201_12-5_GWS at 96m depth size fraction >= 0.22 micro m

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

text: yes

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Landsort Deep

text: mimarks-survey

text: microbial community [PCO:1000004]|marine oxygen minimum zone [ENVO:01000065]

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


text: public

characteristic: SRA accession

text: 83911:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: water sample collected at station EMB201_12-4_GWS at 99m depth size fraction >= 0.22 micro m

text: sea water [ENVO:00002149]

text: water

characteristic: environmental package

text: yes

text: Baltic Sea

text: Landsort Deep

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

characteristic: local environmental context

text: seawater metagenome

characteristic: pcr primers

characteristic: project name

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 83910:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: broad-scale environmental context

text: GFBIO

text: water sample collected at station EMB201_12-4_GWS at 425m depth size fraction >= 0.22 micro m

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

text: yes

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Landsort Deep

text: mimarks-survey

text: microbial community [PCO:1000004]|marine anoxic zone [ENVO:01000066]

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


text: public

characteristic: SRA accession

text: 83909:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: water sample collected at station EMB201_9 (water pumping system of the research vessel) at 4m depth size fraction >= 0.22 micro m

text: sea water [ENVO:00002149]

text: water

characteristic: environmental package

text: yes

text: Baltic Sea

text: Faaroe Basin

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

characteristic: local environmental context

text: seawater metagenome

characteristic: pcr primers

characteristic: project name

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 83908:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: broad-scale environmental context

text: GFBIO

text: V0008F01 F06

text: water sample collected at stations EMB201_10-9 to EMB201_10-14 at 72m depth (water pooled from different CTD tows) size fraction >= 0.22 micro m

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

text: yes

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Faaroe Basin

text: mimarks-survey

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


text: public

characteristic: SRA accession

text: 83907:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: Submitter Id

text: temperate mariginal sea biome [ENVO:01000856]

text: GFBIO

characteristic: broker name

characteristic: collection date

text: V0008F07 F12

characteristic: depth

text: water sample collected at stations EMB201_10-3 to EMB201_10-8 at 160m depth (water pooled from different CTD tows) size fraction >= 0.22 micro m

text: sea water [ENVO:00002149]

text: water

characteristic: environmental package

text: yes

text: Baltic Sea

text: Faaroe Basin

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

characteristic: local environmental context

text: seawater metagenome

characteristic: pcr primers

characteristic: project name

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 83906:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: broad-scale environmental context

text: GFBIO

text: water sample collected at station EMB201_9-1_CTD at 77m depth size fraction >= 0.22 micro m

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

text: yes

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Faaroe Basin

text: mimarks-survey

text: seawater metagenome

characteristic: organism

text: FWD:CAGCMGCCGCGGTAA REV:GACTACHVGGGTATCTAATCC

text: 16S rRNA gene amplicon sequences from suspended particulate matter (central Baltic Sea)

text: seawater metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


text: IOW Leibniz-Institut fur Ostseeforschung Warnemuende

text: public

characteristic: SRA accession

text: 83905:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: water sample collected at station EMB201_7 (water pumping system of the research vessel) at depth 4m size fraction >= 0.22 micro m

text: sea water [ENVO:00002149]

text: water

characteristic: environmental package

text: yes

text: Baltic Sea

text: Gotland Deep

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]|sea surface layer [ENVO:01001581]

characteristic: local environmental context

text: seawater metagenome

characteristic: pcr primers

characteristic: project name

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 83904:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: broad-scale environmental context

text: GFBIO

text: water sample collected at station EMB201_7-1_CTD at 74 m depth size fraction >= 0.22 micro m

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

text: yes

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gotland Deep

text: mimarks-survey

text: microbial community [PCO:1000004]|marine oxygen minimum zone [ENVO:01000065]

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


text: public

characteristic: SRA accession

text: 83903:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: depth

text: water sample collected at station EMB201_7-1_CTD at 80m depth size fraction >= 0.22 micro m

text: sea water [ENVO:00002149]

text: water

characteristic: environmental package

text: yes

text: Baltic Sea

text: Gotland Deep

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

characteristic: local environmental context

text: seawater metagenome

characteristic: pcr primers

characteristic: project name

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 83902:be78a164-d449-4c3a-a8be-8b8a720d9a88

characteristic: broad-scale environmental context

text: GFBIO

text: water sample collected at station EMB201_5-3_CTD at 220 m depth size fraction >= 0.22 micro m

characteristic: description

text: sea water [ENVO:00002149]

characteristic: environmental medium

text: water

text: yes

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gotland Deep

text: mimarks-survey

text: microbial community [PCO:1000004]|marine anoxic zone [ENVO:01000066]

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


text: Natural History Museum

characteristic: GAL

text: EarlhamInstitute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NATURAL HISTORY MUSEUM

characteristic: barcoding center

text: COPO

characteristic: broker name

text: RYAN MITCHELL

text: NATIONAL MUSEUMS NORTHERN IRELAND

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

text: England|Township: Sheringham

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: RYAN MITCHELL

text: NATIONAL MUSEUMS NORTHERN IRELAND

text: adult

characteristic: lifestage

text: Poecilolycia vittata

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Hand Picked

characteristic: sample collection device or method

characteristic: sample same as

text: Poecilolycia vittata

text: NOT PROVIDED

characteristic: sex

text: e8fdb0fb-0619-42a6-a0d4-e7b7ccdf866a-dtol

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Patrick Favre

text: Christian Parisod

text: DNA extraction from field collected samples

characteristic: description

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

characteristic: organism common name

text: sporophyte vegetative stage (PO:0007134)

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

characteristic: title


text: iPSC

text: not applicable

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Human

characteristic: ArrayExpress-SPECIES

text: QIAcube Batch 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Male

characteristic: GENDER

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not applicable

characteristic: PHENOTYPE

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: not applicable

text: male

text: Human

text: QIAcube Batch 44

text: Male

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not applicable

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: iPSC

text: not applicable

characteristic: ArrayExpress-PHENOTYPE

text: male

text: Human

text: QIAcube Batch 52

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: iPSC

text: not applicable

text: male

characteristic: ArrayExpress-SEX

text: Human

characteristic: ArrayExpress-SPECIES

text: QIAcube Batch 45

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: not applicable

text: male

text: Human

text: QIAcube Batch 53

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: not applicable

text: male

text: Human

text: QIAcube Batch 54

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: not applicable

text: male

text: Human

text: QIAcube Batch 55

text: Male

characteristic: GENDER

text: SC

characteristic: INSDC center name

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: not applicable

text: male

text: Human

text: QIAcube Batch 46

text: Male

text: SC

characteristic: INSDC first public

text: public

text: not applicable

characteristic: PHENOTYPE

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: not applicable

text: male

text: Human

text: QIAcube Batch 47

text: Male

text: SC

text: public

text: not applicable

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: not applicable

text: male

text: Human

text: QIAcube Batch 41

text: Male

text: SC

characteristic: INSDC last update

text: public

text: not applicable

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: not applicable

text: male

text: Human

text: QIAcube Batch 42

text: Male

text: SC

text: public

characteristic: INSDC status

text: not applicable

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: NPC

text: not applicable

characteristic: ArrayExpress-PHENOTYPE

text: male

text: Human

text: QIAcube Batch 48

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: NPC

text: not applicable

text: male

characteristic: ArrayExpress-SEX

text: Human

characteristic: ArrayExpress-SPECIES

text: QIAcube Batch 49

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: not applicable

text: male

text: Human

text: QIAcube Batch 56

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: not applicable

text: male

text: Human

text: QIAcube Batch 50

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Male

text: SC

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: not applicable

text: male

text: Human

text: QIAcube Batch 57

text: Male

characteristic: GENDER

text: SC

characteristic: INSDC center name

text: public

text: not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: not applicable

text: male

text: Human

text: QIAcube Batch 51

text: Male

text: SC

characteristic: INSDC first public

text: public

text: not applicable

characteristic: PHENOTYPE

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: not applicable

text: male

text: Human

text: QIAcube Batch 58

text: Male

text: SC

text: public

text: not applicable

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: not applicable

text: male

text: Human

text: QIAcube Batch 51

text: Male

text: SC

characteristic: INSDC last update

text: public

text: not applicable

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:487-46817

tag: Namespace:Max Planck Institute for Marine Microbiology

text: hypersaline lake metagenome

characteristic: description

text: Australia

characteristic: geographic location (country and/or sea)

text: hypersaline lake metagenome

characteristic: organism

text: hypersaline lake metagenome


text: Max Planck Institute for Marine Microbiology

text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:487-46818

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:487-46819

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46820

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46821

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46822

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46823

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46824

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46825

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46826

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46827

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


text: public

text: ena-SAMPLE-TAB-28-04-2023-08:51:05:488-46828

text: hypersaline lake metagenome

text: Australia

text: hypersaline lake metagenome

text: hypersaline lake metagenome


text: University of Glasgow

text: public

text: Input 1 read 1

text: Trypanosoma brucei

text: Trypanosoma brucei


text: University of Glasgow

text: public

text: Input 2 read 1

text: Trypanosoma brucei

text: Trypanosoma brucei


text: University of Glasgow

text: public

text: RAD51-/- DRIP 1 read 1

text: Trypanosoma brucei

text: Trypanosoma brucei


text: University of Glasgow

text: public

text: RAD51-/- (+ EcRHI) DRIP 1 read 1

text: Trypanosoma brucei

text: Trypanosoma brucei


text: University of Glasgow

text: public

text: RAD51-/- DRIP 2 read 1

text: Trypanosoma brucei

text: Trypanosoma brucei


text: University of Glasgow

text: public

text: RAD51-/- (+ EcRHI) DRIP 2 read 1

text: Trypanosoma brucei

text: Trypanosoma brucei


text: Patrick Favre

text: public

text: Sandra Grünig

characteristic: collection date

text: France

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Biscutella laevigata

text: Buckler mustard

characteristic: organism common name

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Biscutella laevigata

text: subspecies divionensis

characteristic: subspecific genetic lineage rank


text: INSERM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Sciatic nerves from P4 animals of different genotypes were dissected in PBS Total RNA from was extracted using RNeasy Mini kit (Qiagen) according to the manufacturer’s instructions. After DNAse treatment, concentration and quality of RNA was determined using the NanoDrop (Thermofisher) and Xpose (Trinean) apparatus. RNAseq libraries were prepared starting from 60 ng of total RNA using the Universal Plus mRNA-Seq (Nugen) as recommended by the manufacturer. The oriented cDNA produced from the poly-A+ fraction were PCR amplified (15 cycles).

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: sciatic nerve

characteristic: organism part

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM

text: public

text: ArrayExpress

text: house mouse

text: adult

text: Adar1 conditional knockout

text: not applicable

text: Mus musculus

text: Mus musculus

text: sciatic nerve

text: Mus musculus

characteristic: title


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:110-6686

characteristic: collection date

text: axenic diatom Seminavis robusta biological replicate 2

text: marine sediment

characteristic: environment (biome)

text: tidal flat

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: Illumina HiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6687

characteristic: Submitter Id

text: axenic diatom Seminavis robusta biological replicate 3

characteristic: description

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: Illumina HiSeq

characteristic: title


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6688

characteristic: collection date

text: axenic diatom Seminavis robusta biological replicate 4

text: marine sediment

characteristic: environment (biome)

text: tidal flat

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

text: sediment metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6689

text: axenic diatom Seminavis robusta biological replicate 5

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: Illumina HiSeq

characteristic: sequencing method


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6690

characteristic: Submitter Id

characteristic: collection date

text: axenic diatom Seminavis robusta biological replicate 6

characteristic: description

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: Illumina HiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6691

text: diatom Seminavis robusta co-cultured with plant-soil bateria biological replicate 1

text: marine sediment

characteristic: environment (biome)

text: tidal flat

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

text: sediment metagenome

text: Illumina HiSeq


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6692

text: diatom Seminavis robusta co-cultured with plant-soil bateria biological replicate 2

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: Illumina HiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6693

characteristic: Submitter Id

characteristic: collection date

text: diatom Seminavis robusta co-cultured with plant-soil bateria biological replicate 3

characteristic: description

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: Illumina HiSeq

characteristic: title


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6694

text: diatom Seminavis robusta co-cultured with plant-soil bateria biological replicate 4

text: marine sediment

characteristic: environment (biome)

text: tidal flat

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

text: sediment metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:111-6695

text: diatom Seminavis robusta co-cultured with plant-soil bateria biological replicate 5

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: Illumina HiSeq

characteristic: sequencing method


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6696

characteristic: Submitter Id

characteristic: collection date

text: diatom Seminavis robusta co-cultured with plant-soil bateria biological replicate 6

characteristic: description

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: Illumina HiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6697

text: diatom Seminavis robusta co-cultured with marine Veerse Meer bateria biological replicate 1

text: marine sediment

characteristic: environment (biome)

text: tidal flat

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

text: sediment metagenome

text: Illumina HiSeq


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6698

text: diatom Seminavis robusta co-cultured with marine Veerse Meer bateria biological replicate 2

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: Illumina HiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6699

characteristic: Submitter Id

characteristic: collection date

text: diatom Seminavis robusta co-cultured with marine Veerse Meer bateria biological replicate 4

characteristic: description

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: Illumina HiSeq

characteristic: title


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6700

text: diatom Seminavis robusta co-cultured with marine Veerse Meer bateria biological replicate 5

text: marine sediment

characteristic: environment (biome)

text: tidal flat

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

text: sediment metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6701

text: diatom Seminavis robusta co-cultured with marine Veerse Meer bateria biological replicate 6

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: Illumina HiSeq

characteristic: sequencing method


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6702

characteristic: Submitter Id

characteristic: collection date

text: plant-soil bateria biological replicate 4

characteristic: description

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: Illumina HiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:112-6703

text: plant-soil bateria biological replicate 5

text: marine sediment

characteristic: environment (biome)

text: tidal flat

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

text: sediment metagenome

text: Illumina HiSeq


text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:113-6704

text: plant-soil bateria biological replicate 6

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: Illumina HiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-25-11-2021-14:40:51:113-6705

characteristic: Submitter Id

characteristic: collection date

text: marine Veerse Meer bateria biological replicate 1

characteristic: description

text: marine sediment

text: tidal flat

text: sediment

text: Netherlands

text: metatranscriptome

text: microbial mat/biofilm

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: Illumina HiSeq

characteristic: title


text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Christian Parisod

text: sample from collection on the field (i.e. natural population)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: isolation and growth condition

text: Biscutella brevicaulis

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Biscutella brevicaulis

characteristic: subspecific genetic lineage rank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Christian Parisod

characteristic: collection date

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Biscutella laevigata

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: diploid

text: Biscutella laevigata

text: subspecies neustriaca


text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sandra Grünig

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: Biscutella laevigata

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: diploid

text: Biscutella laevigata

text: subspecies divionensis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Patrick Favre

text: public

text: Sandra Grünig

text: Germany

characteristic: isolation and growth condition

text: Biscutella laevigata

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Biscutella laevigata

text: subspecies subaphylla

characteristic: subspecific genetic lineage rank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sandra Grünig

characteristic: collection date

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Biscutella laevigata subsp. varia

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: diploid

text: Biscutella laevigata subsp. varia

text: subspecies varia


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Patrick Favre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sandra Grünig

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: Biscutella laevigata

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: diploid

text: Biscutella laevigata

text: subspecies gracilis

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

text: public

text: Sandra Grünig

text: Italy

characteristic: isolation and growth condition

text: Biscutella prealpina

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Biscutella prealpina

characteristic: subspecific genetic lineage rank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Christian Parisod

characteristic: collection date

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: diploid

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Christian Parisod

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: Biscutella laevigata subsp. varia

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: diploid

text: Biscutella laevigata subsp. varia

text: subspecies varia

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Patrick Favre

text: public

text: Valentin Gfeller, Tala Bürki

text: Austria

characteristic: isolation and growth condition

text: Biscutella laevigata

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Biscutella laevigata

text: subspecies kernerii

characteristic: subspecific genetic lineage rank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sandra Grünig

characteristic: collection date

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Biscutella laevigata subsp. laevigata

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: tetraploid

text: Biscutella laevigata subsp. laevigata

text: subspecies laevigata


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Patrick Favre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Christian Parisod

characteristic: description

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: Biscutella laevigata subsp. laevigata

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: field

text: leaf (PO:0025034)

text: tetraploid

text: Biscutella laevigata subsp. laevigata

text: subspecies laevigata

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

text: public

text: Sandra Grünig

text: Italy

characteristic: isolation and growth condition

text: Biscutella laevigata subsp. laevigata

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: tetraploid

characteristic: ploidy

text: Biscutella laevigata subsp. laevigata

text: subspecies laevigata

characteristic: subspecific genetic lineage rank