text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph;

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

characteristic: collecting institution

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Ircinia variabilis

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Ircinia variabilis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: beneficial

characteristic: relationship

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 0e11e2d6-1b48-4829-982c-b9eef2b3ec67-asg-MAGScoT_cleanbin_000002


status: PUBLIC

text: Yes

tag: attribute

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph;

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

unit: m

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

text: adult

text: Ircinia variabilis

characteristic: host scientific name

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Ircinia variabilis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

text: ASG

text: beneficial

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 1a8f7f40-8cb6-4f94-a6e0-ecd99667d799-asg-MAGScoT_cleanbin_000011


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph;

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

characteristic: collected by

text: CEAB-CSIC

characteristic: collecting institution

text: adult sponge tissue

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Girona|Blanes

text: rocky bottom

characteristic: habitat

text: adult

characteristic: host life stage

text: Ircinia variabilis

characteristic: host taxid

text: Manuel Maldonado

characteristic: identified by

text: CEAB-CSIC

text: metagenome-assembled genome

text: Sponge: Ircinia variabilis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: beneficial

characteristic: relationship

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: 4d765ec0-d17d-49af-a193-1046872f90da-asg-MAGScoT_cleanbin_000030


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph;

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: Manuel Maldonado

text: CEAB-CSIC

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: Girona|Blanes

characteristic: geographic location (region and locality)

text: rocky bottom

text: adult

text: Ircinia variabilis

characteristic: host scientific name

text: Manuel Maldonado

text: CEAB-CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Ircinia variabilis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: bacterium

text: WHOLE ORGANISM

text: ASG

text: beneficial

text: bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 8af54dc8-74a9-47b1-8ff1-090f19735c2c-asg-MAGScoT_cleanbin_000052


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided


text: public

text: Sensitive

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: description

text: Portugal

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis


text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: Sensitive

text: Portugal

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: HR-TB

text: Portugal

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: ENA-FIRST-PUBLIC

text: public

text: Other

text: Portugal

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: ENA-LAST-UPDATE

text: public

text: MDR-TB

text: Portugal

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: External Id

text: public

text: Pre-XDR-TB

text: Portugal

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

characteristic: collected by

text: BATES COLLEGE

characteristic: collecting institution

text: adult sponge tissue

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida | Monroe County | Summerland Key

text: Shallow water flats; sandy bottom; algae and sponge dominated

characteristic: habitat

text: adult

characteristic: host life stage

text: Cliona varians

characteristic: host taxid

text: MALCOLM HILL

characteristic: identified by

text: BATES COLLEGE

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: sponge metagenome

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: 2f51700a-d02b-496e-8020-efae4cfee45c-asg-metagenome

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

text: BATES COLLEGE

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: adult

text: Cliona varians

characteristic: host scientific name

text: MALCOLM HILL

text: BATES COLLEGE

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Cliona varians

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Chlamydiales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Chlamydiales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: d36e6de3-bc71-4c18-a03d-925f8bc2d367-asg-bin.22

characteristic: title


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

characteristic: collected by

text: BATES COLLEGE

characteristic: collecting institution

text: adult sponge tissue

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: habitat

text: adult

characteristic: host life stage

text: Cliona varians

characteristic: host taxid

text: MALCOLM HILL

characteristic: identified by

text: BATES COLLEGE

text: metagenome-assembled genome

text: Sponge: Cliona varians

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Acidimicrobiales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Acidimicrobiales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 09b0fec7-b78d-4e5b-b2c6-44b002a10994-asg-bin.27

characteristic: tolid


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

text: BATES COLLEGE

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: adult

text: Cliona varians

characteristic: host scientific name

text: MALCOLM HILL

text: BATES COLLEGE

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Cliona varians

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Chlamydiales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Chlamydiales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 055287d9-8fa8-4f34-bf19-19da574a0d0e-asg-bin.32

characteristic: title


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

characteristic: collected by

text: BATES COLLEGE

characteristic: collecting institution

text: adult sponge tissue

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: habitat

text: adult

characteristic: host life stage

text: Cliona varians

characteristic: host taxid

text: MALCOLM HILL

characteristic: identified by

text: BATES COLLEGE

text: metagenome-assembled genome

text: Sponge: Cliona varians

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Acidimicrobiales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Acidimicrobiales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: taxonomic novelty determined using RED

text: 9d59e27d-51ef-4f31-8342-9b207b10acc6-asg-bin.6

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

text: BATES COLLEGE

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: adult

text: Cliona varians

characteristic: host scientific name

text: MALCOLM HILL

text: BATES COLLEGE

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Cliona varians

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Bdellovibrionales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Bdellovibrionales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: ece16dbb-4d14-470b-b2a2-66c049616d4b-asg-bin.73

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

characteristic: collected by

text: BATES COLLEGE

characteristic: collecting institution

text: adult sponge tissue

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: habitat

text: adult

characteristic: host life stage

text: Cliona varians

characteristic: host taxid

text: MALCOLM HILL

characteristic: identified by

text: BATES COLLEGE

text: metagenome-assembled genome

text: Sponge: Cliona varians

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Rhodococcus qingshengii

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Rhodococcus qingshengii

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: b22b7baa-64ce-431f-98b0-9ba586f1b3e6-asg-bin.54

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MALCOM HILL

text: BATES COLLEGE

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: adult

text: Cliona varians

characteristic: host scientific name

text: MALCOLM HILL

text: BATES COLLEGE

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Cliona varians

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Stappiaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Stappiaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 2e4ab203-d541-464b-9f6f-4552e35f8f23-asg-maxbin2.001

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: Eastern Cape

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Isangi


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: Eastern Cape

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text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

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characteristic: description

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Dublin

characteristic: serovar

characteristic: strain


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: Western Cape

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Female

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

text: Pending

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characteristic: clustid

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text: USA:MI:East Lansing

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text: Homo sapiens

characteristic: host scientific name

text: retricted access

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text: MSU -80 freezer

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text: UCSDMI

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text: No

text: No

text: No

text: No

text: No

text: No

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text: Cayston (on/off not indicated)

text: Yes

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text: No

text: No

text: No

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text: home collection

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characteristic: description

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text: Host-associated (non-saline)

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text: TRIKAFTA microbiome 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD6Yes 399Female2

text: Female

text: Cayston (on), Tobi

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text: No

text: No

text: Yes

text: Yes

characteristic: collection date

text: falcon tube

text: home collection

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text: TRUE

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characteristic: geographic location (country and/or sea)

text: Homo sapiens

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD7Yes 399Female3

text: Female

text: Cayston (on), Tobi

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text: No

text: No

text: Yes

text: Yes

characteristic: clustid

text: falcon tube

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text: UCSD7Yes 399Female3

text: TRUE

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text: Host-associated

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text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

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text: years

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text: sputum

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text: UCSDMI

characteristic: INSDC center name

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD8Yes 399Female5

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD8Yes 399Female5

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

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text: adult

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text: human sputum metagenome

text: MSU -80 freezer

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text: sputum

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text: UCSDMI

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD9Yes 399Female6

text: Female

text: Cayston (on), Tobi

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text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD9Yes 399Female6

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

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text: years

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text: sputum

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text: TRIKAFTA microbiome 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

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text: UCSD10Yes 399Female7

text: Female

text: Cayston (on), Tobi

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text: No

text: No

text: Yes

text: Yes

characteristic: collection date

text: falcon tube

text: home collection

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text: UCSD10Yes 399Female7

characteristic: description

text: TRUE

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text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

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text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: Homo sapiens

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text: sputum

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Male

text: Cayston (on), Tobi (off)

text: No

text: No

text: No

text: Yes

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characteristic: clustid

text: falcon tube

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text: Animal secretion (non-saline)

text: urban biome

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text: MSU -80 freezer

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text: UCSDMI

characteristic: INSDC center name

text: public

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text: No

text: No

text: No

text: No

text: No

text: Yes

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text: No

text: No

text: No

text: falcon tube

text: home collection

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characteristic: elevation

text: Host-associated

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text: human-associated habitat

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text: UCSD

text: not provided

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text: sputum

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text: UCSDMI

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD11Yes 399Female9

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD11Yes 399Female9

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

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text: USA:CA:San Diego

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text: human sputum metagenome

text: MSU -80 freezer

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text: sputum

text: sputum

text: human sputum metagenome

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text: not applicable

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: Submitter Id

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Female

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: collection date

text: falcon tube

text: home collection

text: USA

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

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text: not collected

text: UBERON:sputum

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text: human

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text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD12Yes 399Female10

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: clustid

text: falcon tube

text: home collection

text: USA

characteristic: country

text: UCSD12Yes 399Female10

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: Homo sapiens

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text: years

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text: UBERON:sputum

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text: sputum

text: human sputum metagenome

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text: UCSD

text: not applicable

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text: UCSDMI

characteristic: INSDC center name

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD13Yes 399Female12

text: Female

text: Cayston (on), Tobi

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text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD13Yes 399Female12

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

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text: human-associated

text: USA:CA:San Diego

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text: Homo sapiens

characteristic: host scientific name

text: retricted access

text: years

text: UBERON:sputum

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text: UCSD

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text: adult

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characteristic: organism

text: MSU -80 freezer

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text: sputum

text: human sputum metagenome

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text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD14Yes 399Female13

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD14Yes 399Female13

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

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text: years

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text: not collected

text: UBERON:sputum

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text: human

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text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

characteristic: longitude

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: Submitter Id

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Female

text: Cayston (off)

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: collection date

text: falcon tube

text: home collection

text: USA

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

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text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

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text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

characteristic: sex

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text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Female

text: Cayston (on/off not indicated)

text: Yes

text: No

text: No

text: No

text: No

characteristic: clustid

text: falcon tube

text: home collection

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characteristic: country

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


text: UCSDMI

characteristic: INSDC center name

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD15Yes 399Female14

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD15Yes 399Female14

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

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text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

characteristic: latitude

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD16Yes 399Female1

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD16Yes 399Female1

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

characteristic: organism

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: Submitter Id

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD17Yes 399Female8

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: collection date

text: falcon tube

text: home collection

text: USA

text: UCSD17Yes 399Female8

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

characteristic: longitude

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Male

text: Cayston (on), Colistin (off)

text: No

text: No

text: Yes

text: No

text: No

characteristic: clustid

text: falcon tube

text: home collection

text: USA

characteristic: country

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: male

characteristic: sex

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


text: UCSDMI

characteristic: INSDC center name

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD18Yes 399Female11

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD18Yes 399Female11

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD19Yes 399Female15

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD19Yes 399Female15

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

characteristic: latitude

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: Submitter Id

text: Zosyn

text: Levofloxacin

text: Zosyn

text: Levofloxacin

text: No

text: UCSD20Yes 32Male1

text: Male

text: Cayston (off)

text: No

text: Zosyn: 8/27/20; levofloxacin: 8/30/20

text: No

text: No

text: Yes

text: Yes

characteristic: collection date

text: falcon tube

text: home collection

text: USA

text: UCSD20Yes 32Male1

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

characteristic: organism

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: male

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: UCSD21Yes 399Female4

text: Female

text: Cayston (on), Tobi

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: clustid

text: falcon tube

text: home collection

text: USA

characteristic: country

text: UCSD21Yes 399Female4

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

characteristic: longitude

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


text: UCSDMI

characteristic: INSDC center name

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Female

text: Cayston (on/off not indicated)

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: female

characteristic: sex

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Zosyn

text: Levofloxacin

text: Zosyn

text: Levofloxacin

text: No

text: UCSD33Yes 32Male2

text: Male

text: Cayston (off)

text: No

text: Zosyn: 8/27/20; levofloxacin: 8/30/20

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

text: UCSD33Yes 32Male2

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

characteristic: host scientific name

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: male

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: Submitter Id

text: Zosyn

text: Levofloxacin

text: Zosyn

text: Levofloxacin

text: No

text: UCSD34Yes 32Male3

text: Male

text: Cayston (off)

text: No

text: Zosyn: 8/27/20; levofloxacin: 8/30/20

text: No

text: No

text: Yes

text: Yes

characteristic: collection date

text: falcon tube

text: home collection

text: USA

text: UCSD34Yes 32Male3

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

characteristic: latitude

text: adult

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: male

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: TBD

text: Yes

text: TBD

text: TBD

characteristic: clustid

text: falcon tube

text: home collection

text: USA

characteristic: country

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

text: human sputum metagenome

characteristic: organism

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: TBD

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


text: UCSDMI

characteristic: INSDC center name

text: public

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Male

text: Cayston (on), Tobi (off)

text: No

text: No

text: No

text: Yes

text: Yes

text: falcon tube

text: home collection

text: USA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal secretion (non-saline)

text: urban biome

text: human-associated habitat

text: bodily fluid

text: human-associated

text: USA:CA:San Diego

text: USA

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: retricted access

text: years

text: UBERON:sputum

text: not collected

text: UBERON:sputum

text: UBERON:sputum

text: human

text: not collected

text: cm

text: not collected

text: kg

text: UCSD

text: not provided

text: adult

characteristic: longitude

text: human sputum metagenome

text: MSU -80 freezer

text: TRUE

text: sputum

text: sputum

text: human sputum metagenome

text: male

text: UCSD

text: not applicable

text: TRIKAFTA microbiome 2


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-10

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

text: Human

text: n_infections=2,last_infection_date=2022-02-07

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-03

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-01-24

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-11-15

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2022-02-14

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-31

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-03-14

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-03-07

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Molekylær Medicinsk Afdeling, Aarhus University Hospital, Aarhus, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

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characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-08-15

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-531238/2022

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: n_infections=3,last_infection_date=2022-01-24

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

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text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-342477/2022

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-12-27

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-524044/2022

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-197219/2021

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2022-01-24

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-02-28

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-02-07

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

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characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-90613/2021

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-31

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Molekylær Medicinsk Afdeling, Aarhus University Hospital, Aarhus, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2022-02-21

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: Department of Clinical Microbiology, Odense University Hospital, Odense, Denmark

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-105916/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2022-05-30

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism