E-MTAB-12395:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hebrew University of Jerusalem Israel

characteristic: INSDC center name

text: public

text: E-MTAB-12395:Sample 1

tag: Namespace:Hebrew University of Jerusalem Israel

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: Single-nuclei tissue dissociation: To obtain samples for RNA-seq, whisker-deprived and control mice were sacrificed at day 30 by isoflurane anesthesia followed by cervical dislocation. The left and right barrel cortices were dissected and subjected to the NuNeX procedure; tissues were dissected in ice-cold HBSS (Sigma-Aldrich H6648) and immediately transferred to 1 ml of 10% formalin solution (Sigma-Aldrich HT501128) and incubated at RT for 25–30 min. Samples were then washed in 1xPBS, chopped with a scalpel, and homogenized with a Dounce tissue grinder (Sigma-Aldrich, D9063). The homogenate was passed through a 40 μm cell strainer (BD Falcon) and pelleted by centrifugation at 900 g for 5 min. Cells were resuspended and stained with DAPI (Santa Cruz) for 10 min. All dissociation and staining steps were performed on ice.VChI FACS enrichmentTo enrich barrel cortex VChIs, we sorted cells based on DAPI and tdTomato signals. We combined cells from several mice to reach roughly 200 VChIs per pool, ensuring that each pool was derived from the same mouse strain, treatment condition, sex, and the same hemisphere. To ensure reproducible experimental conditions, we limited whisker plucking to the right side only. RNA was extracted from the pools of sorted cells with a dedicated kit for formalin-fixed tissues (Qiagen, 217504) according to the manufacturer's instructions. See Dataset EV6 for details on sample characteristics and RIN values. Before cell sorting, NeuN antibody was added for staining (1:500, Alexa Fluor®488 conjugated Sigma MAB377X) and incubated for 30 min. Cells were then pelleted by centrifugation at 900 g for 5 min, resuspended in staining buffer, and stained with DAPI (Santa Cruz, DAPI ¦ CAS 28718-90-3) for 10 min. All steps were performed on ice. Cholinergic cells and NeuN-positive/negative cells were sorted through a 70 μm nozzle at a sheath pressure of 70 psi and a drop drive frequency of 90–95 kHz. A highly pure sorting modality (2-way purity sorting) was chosen for both rounds of sorting. The flow rate during the first-round sorting was approximately 5,000 events/s. Samples were collected with BD FACSAria III (BD Biosciences) and analyzed with FCS Express 7 Software (De Novo Software). Perfusion and brain dissection for iDISCO clearing and immunostaining At p30, ChAT-CreXAi14 mice, both control and whisker-deprived, were anesthetized with isoflurane as described above and administered an intraperitoneal injection of 200 mg/kg sodium pentobarbital until nonreactive. Following trans-cardiac perfusion with 1xPBS (5 ml/min) and then 10% formaldehyde in 1xPBS (5 ml/min), mouse brains were collected and further incubated overnight at 4°C in 10% formaldehyde and washed three times with 1xPBS for 30 min. The cortices were dissected and used for iDISCO+ clearing as described initially and further updated in https://idisco.info/idisco-protocol/. Briefly, during the iDISCO+ protocol, we stained the tdTomato expressing cells with an anti-RFP antibody (1:1,200 dilution, Rockland, 600-401-379) for 5 days followed by Alexa-647 conjugated donkey anti-rabbit secondary antibody (1:1,000 dilution, Jackson ImmunoResearch, 711-605-152) for 5 days. Whisker deprivation For whisker deprivation experiments, ChAT-CreXAi14 p7 pups were lightly anesthetized with isoflurane (1–2% by volume in O2, LEI Medical) for 1 min, then quickly removed from the anesthesia chamber and the entire whisker pad plucked individually with tweezers, or slightly pinched without plucking in control mice. After several minutes, once recuperated, treated pups were returned to the home cage and monitored until carried back to the parent cage. For labeling, on day p14 mice were ear-punched on the deprived side. Sorted cholinergic cells were collected into tubes containing 100 μl PKD (< 1,000 cells). We then folowed the RNeasy FFPE Kit(quiagen) protocol by the manufacturer. RNA content was evaluated using a bioanalyser with the Agilent RNA 6000 Pico Kit. Library preparation and sequencing800 pg total RNA from each sample pool was subjected to library construction according to the manufacturer's instructions (SMARTer® Stranded Total RNA-Seq Kit v2 – Pico Input Mammalian, Takara Bio). Libraries were barcoded, pooled, and sequenced with a illumina HiSeq2500.

text: juvenile stage

characteristic: developmental stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

text: whisker deprivation

characteristic: stimulus

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-12395:Sample 2

status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hebrew University of Jerusalem Israel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12395:Sample 2

characteristic: Submitter Id

unit: month

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: ChAT cre X Ai14 cross

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: whisker deprivation

text: Sample 2


E-MTAB-12395:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hebrew University of Jerusalem Israel

characteristic: INSDC center name

text: public

text: E-MTAB-12395:Sample 3

characteristic: age

text: ArrayExpress

text: house mouse

text: juvenile stage

characteristic: developmental stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

text: whisker deprivation

characteristic: stimulus

text: Sample 3


E-MTAB-12395:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hebrew University of Jerusalem Israel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12395:Sample 4

text: ArrayExpress

text: house mouse

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

characteristic: strain

text: Sample 4

characteristic: title


E-MTAB-12395:Sample 5

text: Hebrew University of Jerusalem Israel

text: public

characteristic: SRA accession

text: E-MTAB-12395:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: ChAT cre X Ai14 cross

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

text: Sample 5


E-MTAB-12395:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hebrew University of Jerusalem Israel

characteristic: INSDC center name

text: public

text: E-MTAB-12395:Sample 6

characteristic: age

text: ArrayExpress

text: house mouse

text: juvenile stage

characteristic: developmental stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: Sample 6


E-MTAB-12395:Sample 7

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hebrew University of Jerusalem Israel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12395:Sample 7

text: ArrayExpress

text: house mouse

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

text: whisker deprivation

characteristic: stimulus

text: Sample 7


E-MTAB-12395:Sample 8

text: Hebrew University of Jerusalem Israel

text: public

characteristic: SRA accession

text: E-MTAB-12395:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

text: whisker deprivation

characteristic: strain

text: Sample 8

characteristic: title


E-MTAB-12395:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hebrew University of Jerusalem Israel

characteristic: INSDC center name

text: public

text: E-MTAB-12395:Sample 9

characteristic: age

text: ArrayExpress

text: house mouse

text: juvenile stage

characteristic: developmental stage

text: ChAT cre X Ai14 cross

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

text: whisker deprivation

text: Sample 9


E-MTAB-12395:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hebrew University of Jerusalem Israel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12395:Sample 10

text: ArrayExpress

text: house mouse

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: Sample 10


E-MTAB-12395:Sample 11

text: Hebrew University of Jerusalem Israel

text: public

characteristic: SRA accession

text: E-MTAB-12395:Sample 11

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

characteristic: stimulus

text: Sample 11


E-MTAB-12395:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hebrew University of Jerusalem Israel

characteristic: INSDC center name

text: public

text: E-MTAB-12395:Sample 12

characteristic: age

text: ArrayExpress

text: house mouse

text: juvenile stage

characteristic: developmental stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: female

characteristic: strain

text: Sample 12

characteristic: title


E-MTAB-12395:Sample 13

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hebrew University of Jerusalem Israel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12395:Sample 13

text: ArrayExpress

text: house mouse

text: juvenile stage

text: ChAT cre X Ai14 cross

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: male

text: whisker deprivation

text: Sample 13


E-MTAB-12395:Sample 14

text: Hebrew University of Jerusalem Israel

text: public

characteristic: SRA accession

text: E-MTAB-12395:Sample 14

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: whisker deprivation

text: Sample 14


E-MTAB-12395:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hebrew University of Jerusalem Israel

characteristic: INSDC center name

text: public

text: E-MTAB-12395:Sample 15

characteristic: age

text: ArrayExpress

text: house mouse

text: juvenile stage

characteristic: developmental stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: male

text: whisker deprivation

characteristic: stimulus

text: Sample 15


E-MTAB-12395:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hebrew University of Jerusalem Israel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12395:Sample 16

text: ArrayExpress

text: house mouse

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: male

characteristic: strain

text: Sample 16

characteristic: title


E-MTAB-12395:Sample 17

text: Hebrew University of Jerusalem Israel

text: public

characteristic: SRA accession

text: E-MTAB-12395:Sample 17

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: ChAT cre X Ai14 cross

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: male

text: whisker deprivation

text: Sample 17


E-MTAB-12395:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hebrew University of Jerusalem Israel

characteristic: INSDC center name

text: public

text: E-MTAB-12395:Sample 18

characteristic: age

text: ArrayExpress

text: house mouse

text: juvenile stage

characteristic: developmental stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: whisker deprivation

text: Sample 18


E-MTAB-12395:Sample 19

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hebrew University of Jerusalem Israel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12395:Sample 19

text: ArrayExpress

text: house mouse

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: male

text: whisker deprivation

characteristic: stimulus

text: Sample 19


E-MTAB-12395:Sample 20

text: Hebrew University of Jerusalem Israel

text: public

characteristic: SRA accession

text: E-MTAB-12395:Sample 20

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: ChAT cre X Ai14 cross

text: not applicable

text: Mus musculus

text: Mus musculus

text: somatosensory cortex

text: Mus musculus

text: male

characteristic: strain

text: Sample 20

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: E-MTAB-12455:xg_001-tumor-bo-r-none-04-x

tag: Namespace:Junior Research Group Somatic Evolution and Early Detection German Cancer Research Center (DKFZ), Heidelberg, Germany

text: ArrayExpress

text: human

text: Protocols: One million SCC25-GFP-Luc cells mixed with; i) one million mouse (MEFs), ii) one million naked mole-rat fibroblasts or, iii) no fibroblasts. 100 μl of cell mixtures were injected subcutaneously to both flanks of 8-week old female immunosuppressed NSG mice. Tumors were collected 28 days after injection SCC25 tumors at day 28 were homogenized in lysis buffer from the Qiagen AllPrep mini kit using Tissue Lyzer II (Qiagen). Total RNA was then isolated using Qiagen AllPrep mini kit (Qiagen) and DNase digested (AM1907, Invitrogen) according to manufactures instructions. RNA concentration was measured using a NanoDrop spectrophotometer(Thermo Fisher): RNA integrity was assessed using RNA ScreenTapes(Agilent Technologies). The RNA integrity number (RIN) was above 8.6 forall samples. 100 ng DNase treated RNA was used to generate ribo-minustreated total RNA stranded libraries using Illumina Stranded Total RNAPrep Ligation with Ribo-Zero Plus kit (Illumina) according to manufacturesinstructions.

text: adult

characteristic: developmental stage

text: squamous cell carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: monoculture

characteristic: growth condition

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: tongue

text: Homo sapiens

text: male

text: human squamous carcinoma cells xenografted into nsg mice until neoplasm formation

characteristic: xenograft


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Junior Research Group Somatic Evolution and Early Detection German Cancer Research Center (DKFZ), Heidelberg, Germany

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: co-injection with mouse fibroblasts

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tongue

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: co-injection with naked mole-rat fibroblasts

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: tongue

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12455:xg_001-tumor-hl-r-none-01-x

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: squamous cell carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: monoculture

characteristic: growth condition

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: tongue

text: Homo sapiens

text: male

characteristic: xenograft


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12455:xg_001-tumor-hr-l-none-02-x

text: ArrayExpress

text: human

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: monoculture

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tongue

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: E-MTAB-12455:xg_001-tumor-ll-l-none-03-x

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: monoculture

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: tongue

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

unit: week

characteristic: age

characteristic: biopsy name

text: ArrayExpress

text: naked mole-rat

text: Protocols: Naked mole rats (Heterocephalus glaber) or mice (Mus musculus, C56BL6/J) were culled by neck decapitation and full-thickness 4 and 1 mm2 dorsal skin biopsies, respectively, were immediately collected. In brief, shaved backs of female mice were treated once with 100 ug DMBA (Sigma-Aldrich) in 100 ul acetone. After one week, 10 ug TPA (Sigma-Aldrich) in 100 ul acetone was applied three times a week. The mice were sacrificed at the first macroscopic occurrence of papillomas (weeks 10-12). Male naked mole-rats were treated once with 500 ug DMBA (Sigma-Aldrich) in 250 ul acetone. After one week, 60 ug TPA (Sigma-Aldrich) in 250 ul acetone was applied three times a week for 12 or up to 24 weeks. Skin biopsies were incubated in dissociation buffer containing 1.25 mg/ml Collagenase I (Sigma), 0.5 mg/ml Collagenase II (Worthington), 0.5 mg/ml Collagenase IV (Worthington) and 0.1 mg/ml Hyaluronic acid (Sigma) for 3 hours at 37°C, 750 rpm. Enzymes were diluted in a final volume of 0.5 ml Hanks Balanced Salt solution (HBSS) per sample (Invitrogen). After 3 hours 0.5 ml 0.5 % Trypsin (Gibco) was added (to a final concentration 0.25%) and incubated at 37C for an additional 30 min at 750 rpm. The Enzymatic digestion was quenched with HBSS supplemented with 10% fetal calf serum (FCS, Gibco) and the cell suspensions were filtered through 40-µm cell strainers (Grenier Bio-One). The strainers were washed with an additional 2-3 ml HBSS containing 10% FCS and cells pelleted by centrifugation at 300 x g for 8 min at 4°C. Cell pellets were then carefully (using wide-bored P1000 pipet tips) resuspended in 100-200 ul sorting buffer (PBS containing 1 mM EDTA (Invitrogen) and 0.04% BSA (Sigma) and 1 μg/ml propidium iodide (Invitrogen)). Cell suspensions were carefully transferred to low-binding polypropylene FACS tubes. Live cells from each sample were sorted into one 96-well flat-bottom low attachment tissue culture plate well containing 30 ul sorting buffer on a cold plate on an BD FACS Aria 2 Len sorter using a 70 µm nozzle (70 psi). PI was excited with a 561 nm laser and fluorescence was recorded with a 610/20 595LP filter. Cells were gated i) FSC-A vs SSC-A to remove debris ii) SSC-W vs SSC-A to exclude doublets iii) RL780/60-A vs PI-A to exclude auto-fluorescent cells and dead cells (PI positive). Single cell cDNA libraries were prepared using the 10X Genomics Chromium Single Cell 3’ kit (User Guide Version 3) according to the manufacture’s instruction. Quantification of the libraries was carried out using the Qubit dsDNA HS Assay Kit (Life Technologies), and cDNA integrity was assessed using D1000 ScreenTapes (Agilent Technologies).

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Heterocephalus glaber

text: Heterocephalus glaber

text: skin of body

text: Heterocephalus glaber

text: male

text: Cambrigde/Cersei

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: naked mole-rat

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: skin of body

characteristic: organism part

text: Heterocephalus glaber

text: male

characteristic: sex

text: Cambrigde/Cruella


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: naked mole-rat

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Heterocephalus glaber

text: Heterocephalus glaber

text: skin of body

text: Heterocephalus glaber

text: male

text: Cambrigde/Shira

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: biopsy name

text: ArrayExpress

text: naked mole-rat

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Heterocephalus glaber

text: Heterocephalus glaber

text: skin of body

text: Heterocephalus glaber

text: male

text: Cambrigde/McGonagall

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

text: Dr. Fulvio Garibaldi, PhD

text: Dept. of Earth, Environment and Life Sciences (DISTAV), University of Genoa

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ligurian Sea

characteristic: geographic location (region and locality)

text: Marine pelagic

characteristic: habitat

text: Dr. Fulvio Garibaldi, PhD

text: juvenile

characteristic: lifestage

text: Thunnus thynnus

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: Thunnus thynnus

text: NOT COLLECTED

characteristic: sex

text: ERGA AV MT 08

text: Fulvio 2022-09-07 A

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Dr. Fulvio Garibaldi, PhD

text: Atlantic bluefin tuna

characteristic: common name

text: Italy

text: not collected

text: not collected

text: Ligurian Sea

text: Marine pelagic

text: Dr. Fulvio Garibaldi, PhD

text: juvenile

text: Thunnus thynnus

text: WHOLE ORGANISM

text: ERGA

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 09

text: Fulvio 2022-09-07 B

text: N

characteristic: title


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Dr. Fulvio Garibaldi, PhD

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ligurian Sea

characteristic: geographic location (region and locality)

text: Marine pelagic

characteristic: habitat

text: Dr. Fulvio Garibaldi, PhD

text: juvenile

characteristic: lifestage

text: Thunnus thynnus

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 10

text: Fulvio 2022-09-07 C

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA AV MT 08

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Dr. Fulvio Garibaldi, PhD

text: Atlantic bluefin tuna

text: Italy

text: not collected

text: not collected

text: Ligurian Sea

text: Marine pelagic

text: Dr. Fulvio Garibaldi, PhD

text: juvenile

text: Thunnus thynnus

text: MUSCLE

characteristic: organism part

text: ERGA

characteristic: project name

characteristic: sample derived from

text: Thunnus thynnus

text: NOT COLLECTED

characteristic: sex

text: ERGA AV MT 08

text: Fulvio 2022-09-07 A

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

text: ERGA AV MT 09

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Dr. Fulvio Garibaldi, PhD

characteristic: collecting institution

characteristic: collection date

text: Atlantic bluefin tuna

characteristic: common name

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ligurian Sea

text: Marine pelagic

text: Dr. Fulvio Garibaldi, PhD

text: juvenile

text: Thunnus thynnus

text: MUSCLE

text: ERGA

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 09

text: Fulvio 2022-09-07 B

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA AV MT 10

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Dr. Fulvio Garibaldi, PhD

text: Atlantic bluefin tuna

text: Italy

text: not collected

text: not collected

text: Ligurian Sea

characteristic: geographic location (region and locality)

text: Marine pelagic

characteristic: habitat

text: Dr. Fulvio Garibaldi, PhD

text: juvenile

characteristic: lifestage

text: Thunnus thynnus

characteristic: organism

text: MUSCLE

characteristic: organism part

text: ERGA

characteristic: project name

text: Thunnus thynnus

text: NOT COLLECTED

text: ERGA AV MT 10

text: Fulvio 2022-09-07 C

text: N


text: OXFORD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Samples were collected from the rotator interval of the shoulder joint capsule. Cell suspension was sorted using SONY SH800 cell sorter. 20,000 - 30,000 cells were loaded onto a Next GEM Chip to create single cell emulsion on the 10x Chromium Controller. Single cell gene expression libraries were prepared using the 10x Chromium Next GEM Single Cell 3' Reagent Kits v3.1.

characteristic: description

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: articular capsule of glenohumeral joint

text: Homo sapiens

text: female

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OXFORD

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: embryo stage

text: normal

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: articular capsule of glenohumeral joint

characteristic: organism part

text: Homo sapiens

text: male

text: fresh specimen

characteristic: title


text: OXFORD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: frozen shoulder

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: articular capsule of glenohumeral joint

text: Homo sapiens

text: male

text: fresh specimen


text: OXFORD

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: articular capsule of glenohumeral joint

text: Homo sapiens

text: male

characteristic: sex

text: fresh specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OXFORD

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: adult

text: normal

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: articular capsule of glenohumeral joint

text: Homo sapiens

text: female

text: fresh specimen

characteristic: specimen with known storage state


text: OXFORD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: Protocols: Capsular fibroblasts were isolated from frozen shoulder patients and were co-cultured with monocyte-derived macrophages(MDM), which were isolated from blood cones and treated with M-CSF for 5 days. Capsule-derived fibroblasts isolated from frozen shoulder patients were added to MerTKhigh or MerTKlow incubations at a density of 200,000 cells/well. Fibroblasts and MDMs were co-cultured for 48 hrs in complete media containing 3% FCS prior to harvest and sorting. RNA was extracted using RNEasy microprep kit (Qiagen) according to the manufacturers protocol. Double stranded cDNA library construction was performed using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (E7760L) with custom adapters and dual indexed barcodes.

text: adult

text: frozen shoulder

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: articular capsule of glenohumeral joint

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title


text: OXFORD

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: frozen shoulder

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: articular capsule of glenohumeral joint

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Advanced Centre for Treatment Research and Education in Cancer

text: ArrayExpress

text: human

text: Protocols: The FFPE tumor tissues were collected from ACTREC-TMC The 40 FFPE orphan tumor samples has been subjected to microtome-sectioning where ~5-6 sections of 10 um has been taken based on the tissue abundance for RNA extraction. The RNA extraction from has been performed according to standard protocol of Qiagen's RNeasy FFPE tissue kits. The RNA concentration was measured using Nanodrop 2000c spectrophotometer. Using the Illumina RNA Prep with enrichment Kit, formerly known as the TruSeq RNA Access Library Prep Kit, whole transcriptome sequencing was done on 40 FFPE samples of papillary thyroid cancer.

text: adult

text: papillary thyroid carcinoma

text: Indian

characteristic: ethnic group

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

text: formalin-fixed paraffin-embedded

characteristic: sample with known storage state

text: Homo sapiens

text: male

characteristic: sex


text: Advanced Centre for Treatment Research and Education in Cancer

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: adult

text: papillary thyroid carcinoma

text: Indian

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: thyroid gland

characteristic: organism part

text: formalin-fixed paraffin-embedded

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: papillary thyroid carcinoma

characteristic: disease

text: Indian

text: wild type genotype

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

text: formalin-fixed paraffin-embedded

text: Homo sapiens

text: male


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: Protocols: The FFPE tumor tissues were collected from ACTREC-TMC The 30 FFPE orphan tumor samples has been subjected to microtome-sectioning where ~5-6 sections of 10 um has been taken based on the tissue abundance for RNA extraction. The RNA extraction from has been performed according to standard protocol of Qiagen's RNeasy FFPE tissue kits. The RNA concentration was measured using Nanodrop 2000c spectrophotometer. Using the Illumina RNA Prep with enrichment Kit, formerly known as the TruSeq RNA Access Library Prep Kit, whole transcriptome sequencing was done on 30 FFPE samples of anaplastic thyroid cancer.

text: adult

text: Thyroid Gland Undifferentiated (Anaplastic) Carcinoma

text: Indian

characteristic: ethnic group

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: thryoid gland

text: FFPE

characteristic: sample with known storage state

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: adult

text: Indian

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: thryoid gland

characteristic: organism part

text: FFPE

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Christoph Hahn

text: University of Graz, Institute of Biology

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 03

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Christoph Hahn

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 01

text: NOT PROVIDED

text: N


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Christoph Hahn

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 12

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Christoph Hahn

text: Austria

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 13

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Christoph Hahn

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 06

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Christoph Hahn

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 02

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Christoph Hahn

text: Austria

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 04

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Christoph Hahn

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 09

text: NOT PROVIDED

text: N


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Christoph Hahn

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 05

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Christoph Hahn

text: Austria

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 15

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Christoph Hahn

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 11

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Christoph Hahn

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 10

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Christoph Hahn

text: Austria

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 08

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Christoph Hahn

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 14

text: NOT PROVIDED

text: N


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Christoph Hahn

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 07

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 03

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Christoph Hahn

text: Austria

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

characteristic: sample same as

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 03

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA CH AT 01

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Christoph Hahn

characteristic: collecting institution

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 01

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 12

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Christoph Hahn

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 12

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA CH AT 13

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Christoph Hahn

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

characteristic: sample same as

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 13

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 06

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Christoph Hahn

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 06

text: NOT PROVIDED

text: N


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA CH AT 02

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Christoph Hahn

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 02

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 04

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Christoph Hahn

characteristic: collecting institution

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

characteristic: sample same as

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 04

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA CH AT 09

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Christoph Hahn

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 09

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 05

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Christoph Hahn

characteristic: collecting institution

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 05

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA CH AT 15

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Christoph Hahn

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

characteristic: sample same as

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 15

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 11

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Christoph Hahn

characteristic: collecting institution

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 11

text: NOT PROVIDED

text: N


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA CH AT 10

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Christoph Hahn

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 10

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 08

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Christoph Hahn

characteristic: collecting institution

text: Austria

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

characteristic: lifestage

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

characteristic: sample same as

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 08

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA CH AT 14

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Christoph Hahn

characteristic: collection date

text: Austria

characteristic: geographic location (country and/or sea)

text: Murau

text: skin of freshwater fish (Salmo trutta)

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CH AT 14

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA CH AT 07

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Christoph Hahn

characteristic: collecting institution

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Murau

characteristic: geographic location (region and locality)

text: skin of freshwater fish (Salmo trutta)

characteristic: habitat

text: Christoph Hahn

text: adult

text: Gyrodactylus teuchis

text: WHOLE ORGANISM

text: ERGA

text: Gyrodactylus teuchis

text: HERMAPHRODITE MONOECIOUS

text: ERGA CH AT 07

text: NOT PROVIDED

text: N

characteristic: title


text: Bone

characteristic: ArrayExpress-PHENOTYPE

text: unknown

characteristic: ArrayExpress-SEX

text: Felis catus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Unknown

characteristic: GENDER

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Bone

characteristic: PHENOTYPE

characteristic: SRA accession

text: domestic cat

characteristic: common name

text: Felis catus

text: Felis catus


text: Skin

text: unknown

text: Felis catus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Unknown

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Skin

characteristic: Submitter Id

text: domestic cat

text: Felis catus

characteristic: organism

text: Felis catus


text: Kidney

characteristic: ArrayExpress-PHENOTYPE

text: unknown

text: Felis catus

text: Unknown

text: SC

text: public

text: Kidney

text: domestic cat

text: Felis catus

text: Felis catus

characteristic: title


text: Adrenal gland

text: unknown

characteristic: ArrayExpress-SEX

text: Felis catus

characteristic: ArrayExpress-SPECIES

text: Unknown

text: SC

text: public

text: Adrenal gland

text: domestic cat

text: Felis catus

text: Felis catus


text: Lymph node

text: unknown

text: Felis catus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Unknown

text: SC

text: public

text: Lymph node

text: domestic cat

text: Felis catus

text: Felis catus


text: Liver

text: unknown

text: Felis catus

text: Unknown

characteristic: GENDER

text: SC

characteristic: INSDC center name

text: public

text: Liver

text: domestic cat

text: Felis catus

text: Felis catus


text: Skeletal muscle

text: unknown

text: Felis catus

text: Unknown

text: SC

text: public

characteristic: INSDC status

text: Skeletal muscle

characteristic: PHENOTYPE

text: domestic cat

text: Felis catus

text: Felis catus


text: Muscle

text: unknown

text: Felis catus

text: Unknown

text: SC

text: public

text: Muscle

characteristic: SRA accession

text: domestic cat

characteristic: common name

text: Felis catus

text: Felis catus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universite de Limoges

text: public

tag: Namespace:Universite de Limoges

characteristic: collection date

text: ChromID CARBA SMAR selective chromogenic medium bi-plates (bioMerieux, Marcy-l Etoile, France)

characteristic: description

text: Djibouti

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Pus - Nosocomial human infection - Intensive care unit - hospital 1

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite de Limoges

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Djibouti

text: diseased

text: Homo sapiens

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: title


characteristic: ENA-CHECKLIST

text: Universite de Limoges

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Djibouti

text: diseased

text: Homo sapiens

text: Cerebrospinal fluid (CSF) - Nosocomial human infection - Intensive care unit - hospital 2

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-FIRST-PUBLIC

text: Universite de Limoges

text: public

characteristic: collection date

characteristic: description

text: Djibouti

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Pus - Nosocomial human infection - Intensive care unit - hospital 3

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Universite de Limoges

text: public

text: Djibouti

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood - Nosocomial human infection - Intensive care unit - hospital 3

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite de Limoges

text: public

text: Djibouti

text: diseased

text: Homo sapiens

text: Pus - Nosocomial human infection - Orthopedic unit - hospital 1

text: Proteus mirabilis

text: Proteus mirabilis


text: Universite de Limoges

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Djibouti

text: diseased

text: Homo sapiens

text: Protected specimen brushing (PSB) - Nosocomial human infection - Intensive care unit - hospital 1

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Universite de Limoges

text: public

characteristic: Submitter Id

text: Djibouti

text: diseased

text: Homo sapiens

text: Cerebrospinal fluid (CSF) - Nosocomial human infection - Intensive care unit - hospital 1

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

text: Universite de Limoges

text: public

text: Djibouti

text: diseased

text: Homo sapiens

text: Pus - Nosocomial human infection - Otorhinolaryngology unit - hospital 1

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


text: Universite de Limoges

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Djibouti

text: diseased

text: Homo sapiens

text: Urine - Community-acquired human infection - Outpatient clinic

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

text: Universite de Limoges

text: public

characteristic: SRA accession

text: Djibouti

text: diseased

text: Homo sapiens

text: Pus - Nosocomial human infection - Intensive care unit - hospital 4

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Universite de Limoges

text: public

characteristic: collection date

characteristic: description

text: Djibouti

text: diseased

text: Homo sapiens

text: Protected specimen brushing (PSB) - Nosocomial human infection - Intensive care unit - hospital 3

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universite de Limoges

text: public

text: Djibouti

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: Pus - Nosocomial human infection - Visceral surgery unit - hospital 3

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universite de Limoges

text: public

text: Djibouti

text: healthy

text: Fish (undetermined species)

characteristic: host scientific name

characteristic: isolate

text: Internal organs (liver, spleen, and kidney) - Fish - Local fish market

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite de Limoges

text: public

text: Djibouti

text: healthy

text: Fish (undetermined species)

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universite de Limoges

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Djibouti

text: healthy

text: Bos taurus

text: Faeces - Cattle - Local livestock market

text: Escherichia coli

text: Escherichia coli


text: Universite de Limoges

text: public

characteristic: Submitter Id

text: Djibouti

text: not applicable

text: not applicable

text: Water - Community septic tank - Household

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: Universite de Limoges

text: public

text: Djibouti

text: diseased

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: Universite de Limoges

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Djibouti

text: healthy

text: Capra aegagrus hircus

text: Faeces - Goat - Local livestock market

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

text: Universite de Limoges

text: public

characteristic: SRA accession

text: Djibouti

text: healthy

text: Camelus dromedarius

text: Faeces - Dromadery - Local livestock market

text: Escherichia coli

text: Escherichia coli


text: ED

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:INRES Molecular Biology of the Rhizosphere

text: agricultural field

characteristic: broad-scale environmental context

characteristic: collection date

text: soil

characteristic: description

text: soil

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: greenhouse

characteristic: local environmental context

text: Zea mays

characteristic: project name

text: Zea mays


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRES Molecular Biology of the Rhizosphere

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: agricultural field

text: soil

text: soil

text: Germany

text: greenhouse

text: Zea mays

characteristic: organism

text: Zea mays


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: agricultural field

text: endosphere

text: endosphere

text: Germany

text: greenhouse

text: Zea mays

text: Zea mays

characteristic: title


text: public

text: agricultural field

characteristic: broad-scale environmental context

characteristic: collection date

text: rhizosphere

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

text: greenhouse

text: Zea mays

text: Zea mays


characteristic: ENA-LAST-UPDATE

text: public

text: agricultural field

text: rhizosphere

text: soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: greenhouse

characteristic: local environmental context

text: Zea mays

characteristic: project name

text: Zea mays


characteristic: External Id

text: CAM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: whole genome sequencing of adult thorax tissue

text: Ptecticus aurifer

characteristic: organism

text: Ptecticus aurifer

text: thorax


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAM

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Hermetia illucens

text: Hermetia illucens

text: male

characteristic: sex

text: thorax


text: CAM

text: public

characteristic: description

text: Hermetia illucens

text: Hermetia illucens

text: female

text: thorax

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CAM

text: public

text: Hermetia illucens

text: Hermetia illucens

text: thorax


text: public

tag: Namespace:Institute for Plant Science in Montpellier - CNRS

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: cultivar

text: Protocols: Samples were collected in liquid nitrogen and directly stored at -80 Plants were grown in hydroponics in ambient or elevated CO2 (900 PPM), low (0,5 mM) of high (10 mM) nitrate provision, and iron starvation or not. RNA were extracted using column-based protocols from RNA biology company After the QC procedures, mRNA were enriched using oligo(dT) beads. The mRNA were fragmented randomly by adding fragmentation buffer, then the cDNA were synthesized by using mRNA template and random hexamers primer, after which a custom second-strand synthesis buffer (Illumina), dNTPs, RNase H and DNA polymerase I were added to initiate the second-strand synthesis. After a series of terminal repair, ligation and sequencing adaptor ligation, the double-stranded cDNA library is completed through size selection and PCR enrichment.

text: rosette growth stage

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Institute for Plant Science in Montpellier - CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: rosette growth stage

text: normal

text: wild type genotype

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

text: Shanghai Tenth People's Hospital

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Shanghai Tenth People's Hospital

text: ArrayExpress

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\"adenylate, then the adaptors were ligated to the end of these 3\"adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

characteristic: description

text: wild type genotype

text: YPD plate

characteristic: growth condition

text: not applicable

text: Candida albicans

text: Candida albicans

text: whole organism

text: Candida albicans

characteristic: strain

characteristic: title


text: Shanghai Tenth People's Hospital

text: public

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: YPD plate

text: not applicable

characteristic: isolate

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Junior Research Group Somatic Evolution and Early Detection German Cancer Research Center (DKFZ), Heidelberg, Germany

text: public

characteristic: age

characteristic: biopsy name

text: ArrayExpress

text: naked mole-rat

characteristic: common name

text: Protocols: Naked mole rats (Heterocephalus glaber) or mice (Mus musculus, C56BL6/J) were culled by neck decapitation and full-thickness 4 and 1 mm2 dorsal skin biopsies, respectively, were immediately collected. In brief, shaved backs of female mice were treated once with 100 ug DMBA (Sigma-Aldrich) in 100 ul acetone. After one week, 10 ug TPA (Sigma-Aldrich) in 100 ul acetone was applied three times a week. The mice were sacrificed at the first macroscopic occurrence of papillomas (weeks 10-12). Male naked mole-rats were treated once with 500 ug DMBA (Sigma-Aldrich) in 250 ul acetone. After one week, 60 ug TPA (Sigma-Aldrich) in 250 ul acetone was applied three times a week for 12 or up to 24 weeks. Skin biopsies were incubated in dissociation buffer containing 1.25 mg/ml Collagenase I (Sigma), 0.5 mg/ml Collagenase II (Worthington), 0.5 mg/ml Collagenase IV (Worthington) and 0.1 mg/ml Hyaluronic acid (Sigma) for 3 hours at 37°C, 750 rpm. Enzymes were diluted in a final volume of 0.5 ml Hanks Balanced Salt solution (HBSS) per sample (Invitrogen). After 3 hours 0.5 ml 0.5 % Trypsin (Gibco) was added (to a final concentration 0.25%) and incubated at 37C for an additional 30 min at 750 rpm. The Enzymatic digestion was quenched with HBSS supplemented with 10% fetal calf serum (FCS, Gibco) and the cell suspensions were filtered through 40-µm cell strainers (Grenier Bio-One). The strainers were washed with an additional 2-3 ml HBSS containing 10% FCS and cells pelleted by centrifugation at 300 x g for 8 min at 4°C. Cell pellets were then carefully (using wide-bored P1000 pipet tips) resuspended in 100-200 ul sorting buffer (PBS containing 1 mM EDTA (Invitrogen) and 0.04% BSA (Sigma) and 1 μg/ml propidium iodide (Invitrogen)). Cell suspensions were carefully transferred to low-binding polypropylene FACS tubes. Live cells from each sample were sorted into one 96-well flat-bottom low attachment tissue culture plate well containing 30 ul sorting buffer on a cold plate on an BD FACS Aria 2 Len sorter using a 70 µm nozzle (70 psi). PI was excited with a 561 nm laser and fluorescence was recorded with a 610/20 595LP filter. Cells were gated i) FSC-A vs SSC-A to remove debris ii) SSC-W vs SSC-A to exclude doublets iii) RL780/60-A vs PI-A to exclude auto-fluorescent cells and dead cells (PI positive). Single cell cDNA libraries were prepared using the 10X Genomics Chromium Single Cell 3’ kit (User Guide Version 3) according to the manufacture’s instruction. Quantification of the libraries was carried out using the Qubit dsDNA HS Assay Kit (Life Technologies), and cDNA integrity was assessed using D1000 ScreenTapes (Agilent Technologies).

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: individual

text: not applicable

text: Heterocephalus glaber

text: Heterocephalus glaber

text: skin of body

characteristic: organism part

text: Heterocephalus glaber

text: male

characteristic: sex

text: Cambrigde/Cersei

text: un

characteristic: treatment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: naked mole-rat

characteristic: description

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: skin of body

text: Heterocephalus glaber

text: male

text: Cambrigde/Cruella

text: ac


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

characteristic: biopsy name

text: ArrayExpress

characteristic: broker name

text: naked mole-rat

characteristic: common name

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Heterocephalus glaber

text: Heterocephalus glaber

text: skin of body

text: Heterocephalus glaber

text: male

text: Cambrigde/Shira

characteristic: strain

characteristic: title

text: dt


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: naked mole-rat

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: individual

text: not applicable

text: Heterocephalus glaber

text: Heterocephalus glaber

text: skin of body

characteristic: organism part

text: Heterocephalus glaber

text: male

characteristic: sex

text: Cambrigde/McGonagall

text: to

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Dept. of Clinical and Molecular Medicine Norwegian University of Science and Technology (NTNU)

characteristic: Submitter Id

unit: day

characteristic: age

text: ACTGAT,CTTGTA

characteristic: barcode

text: ArrayExpress

text: house mouse

text: Protocols: For stool collection, previously cohabitating mice littermates were separated into individual cages for a duration of 30 minutes. After said period all stool pellets were collected, snap frozen in liquid nitrogen and stored at -80C until further processing. Genomic DNA extraction from frozen stool (snap frozen in liquid N2) samples was done using the QIAamp Fast DNA Stool Mini Kit (Qiagen, Cat. No. 51604) according to protocol. Lysis temperature was adjusted to 95℃. 16S rDNA Amplicon Metagenomic Sequencing of bacterial gDNA derived from mouse stool was outsourced to Novogene UK. Amplicon library of the V4 region was obtained using the 515F (5’-GTGCCAGCMGCCGCGGTAA-3') and 806R (5’- GGACTACHVGGGTWTCTAAT -3') primer pairs connected with barcodes (see sample table for barcodes). The PCR products with proper size were selected by 2% agarose gel electrophoresis. Same amount of PCR products from each sample was pooled, end-repaired, A-tailed and further ligated with Illumina adapters.

characteristic: description

text: adult

text: Villin-Cre +; Lsd1 fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dept. of Clinical and Molecular Medicine Norwegian University of Science and Technology (NTNU)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ACTGAT,ACTTGA

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: Villin-Cre +; Lsd1 fl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: ACTGAT,GATCAG

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: Villin-Cre +; Lsd1 fl/fl

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ACTGAT,TAGCTT

characteristic: barcode

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: Villin-Cre +; Lsd1 fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ACTGAT,GGCTAC

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: Villin-Cre +; Lsd1 fl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: ACTGAT,TGACCA

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: Villin-Cre -; Lsd1 fl/fl

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: female

characteristic: strain

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ACTGAT,CAGATC

characteristic: barcode

text: ArrayExpress

text: house mouse

text: adult

text: Villin-Cre -; Lsd1 fl/fl

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ACTGAT,GCCAAT

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

text: Villin-Cre -; Lsd1 fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: ACTGAT,ATCACG

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: Villin-Cre -; Lsd1 fl/fl

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: female


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ACTGAT,CGATGT

characteristic: barcode

text: ArrayExpress

text: house mouse

text: adult

text: Villin-Cre -; Lsd1 fl/fl

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CAACTA,ATCACG

text: ArrayExpress

characteristic: broker name

text: house mouse

text: neonate

text: Villin-Cre +; Lsd1 fl/fl

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: CAACTA,CGATGT

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

characteristic: developmental stage

text: Villin-Cre +; Lsd1 fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: male


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: CAACTA,TGACCA

characteristic: barcode

text: ArrayExpress

text: house mouse

text: neonate

text: Villin-Cre +; Lsd1 fl/fl

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CAACTA,GCCAAT

text: ArrayExpress

characteristic: broker name

text: house mouse

text: neonate

text: Villin-Cre -; Lsd1 fl/fl

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: CAACTA,CAGATC

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: Villin-Cre -; Lsd1 fl/fl

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: CAACTA,ACTTGA

characteristic: barcode

text: ArrayExpress

text: house mouse

text: neonate

characteristic: developmental stage

text: Villin-Cre -; Lsd1 fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: male


BFY

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BOLOGNA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BFY

tag: Namespace:UNIVERSITY OF BOLOGNA

text: Common canary

text: DNA pool of 6 Black Frosted Yellow canaries

text: Italy

characteristic: geographic location (country and/or sea)

text: Serinus canaria

text: Serinus canaria

text: BLACK FROSTED YELLOW pool


OPA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BOLOGNA

characteristic: INSDC last update

text: public

text: OPA

text: Common canary

text: DNA pool of 10 Opal canaries

text: Italy

text: Serinus canaria

text: Serinus canaria

text: OPAL pool

characteristic: title


ONY

text: UNIVERSITY OF BOLOGNA

text: public

text: ONY

text: Common canary

characteristic: common name

text: DNA pool of 4 Black Onyx White Dom canaries

characteristic: description

text: Italy

text: Serinus canaria

text: Serinus canaria

text: ONYX pool


OXO

text: UNIVERSITY OF BOLOGNA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: OXO

text: Common canary

text: DNA pool of 5 crossbred Opal x Onyx canaries

text: Italy

text: Serinus canaria

text: Serinus canaria

text: OPALxONYX pool


MOG

text: UNIVERSITY OF BOLOGNA

text: public

text: MOG

characteristic: Submitter Id

text: Common canary

text: DNA pool of 6 Mogno canaries

text: Italy

text: Serinus canaria

text: Serinus canaria

text: MOGNO pool


text: Research Centre for Natural Sciences

text: public

tag: Namespace:Research Centre for Natural Sciences

text: S. polychroa, whole genome resequencing of parent 1 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant parent

text: whole body

text: S. polychroa, regenerated group parent 1


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of parent 2 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant parent

text: whole body

text: S. polychroa, regenerated group parent 2


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of parent 3 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant parent

text: whole body

text: S. polychroa, regenerated group parent 3


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of parent 4 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant parent

text: whole body

text: S. polychroa, regenerated group parent 4


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of parent 1 from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control parent

text: whole body

text: S. polychroa, control group parent 1


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of parent 2 from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control parent

text: whole body

text: S. polychroa, control group parent 2


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of parent 3 from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control parent

text: whole body

text: S. polychroa, control group parent 3


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of parent 4 from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control parent

text: whole body

text: S. polychroa, control group parent 4


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of regenerant 1 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant

text: whole body

text: S. polychroa, regenerated group regenerant 1


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of regenerant 2 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant

text: whole body

text: S. polychroa, regenerated group regenerant 2


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of regenerant 3 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant

text: whole body

text: S. polychroa, regenerated group regenerant 3


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of regenerant 4 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant

text: whole body

text: S. polychroa, regenerated group regenerant 4


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 1 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant filia

text: whole body

text: S. polychroa, regenerated group filia 1


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 3 from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant filia

text: whole body

text: S. polychroa, regenerated group filia 3


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 4A from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant filia

text: whole body

text: S. polychroa, regenerated group filia 4A


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 4B from the regenerated group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: regenerant filia

text: whole body

text: S. polychroa, regenerated group filia 4B


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 1 from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control filia

text: whole body

text: S. polychroa, control group filia 1


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 2 from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control filia

text: whole body

text: S. polychroa, control group filia 2


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 4A from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control filia

text: whole body

text: S. polychroa, control group filia 4A


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, whole genome resequencing of filia 4B from the control group

text: Schmidtea polychroa

text: Schmidtea polychroa

text: control filia

text: whole body

text: S. polychroa, control group filia 4B


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, genomic DNA isolated from a single individual for Illumina sequencing to be used for de novo assembly polishing

text: Schmidtea polychroa

text: Schmidtea polychroa

text: whole body

text: S. polychroa, sample for de novo assembly Illumina


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, genomic DNA isolated from 20 animals for PacBio sequencing to be used for de novo assembly

text: Schmidtea polychroa

text: Schmidtea polychroa

text: whole body

text: S. polychroa, samples for de novo assembly Pacbio


text: Research Centre for Natural Sciences

text: public

text: S. polychroa, mRNA isolated from 4 animals for Illumina sequencing, used for de novo transcriptome assembly

text: Schmidtea polychroa

text: Schmidtea polychroa

text: whole body

text: S. polychroa, samples for transcriptome assembly


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax