text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

text: Department of Biochemistry, University of Cambridge, Cambridge, UK

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cambridge | University of Cambridge | Department of Biochemistry | Hopkins Building

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Syntrophorhabdaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: Syntrophorhabdaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: ea8a2486-d3ea-4471-b911-e61a867642bf-asg-MAGScoT_cleanbin_000052


status: PUBLIC

text: Yes

tag: attribute

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

characteristic: collecting institution

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

text: ciliate culture

text: United Kingdom

unit: DD

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Bournemouth University, Bournemouth, United Kingdom | Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: uncultured Syntrophobacter sp.

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: United Kingdom | Dorset | Wareham | East Stoke | East Stoke Fen Nature Reserve

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

text: A pole-mounted beaker was used to collect aquatic sediment from a freshwater pond

characteristic: sample collection device or method

characteristic: sample derived from

text: uncultured Syntrophobacter sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

text: taxonomic classification defined by topology and ANI

text: 1f020eac-00c0-47a9-a2d2-2b835ae41f1e-asg-MAGScoT_cleanbin_000075


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Oscillospiraceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: Oscillospiraceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: taxonomic novelty determined using RED

text: 6d5ce340-e6f1-4049-a887-7582f2f80bc1-asg-MAGScoT_cleanbin_000049


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

characteristic: collecting institution

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: Anaerovoracaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Anaerovoracaceae bacterium

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 9a18b0be-3cd7-4579-855f-5da548aae6a9-asg-MAGScoT_cleanbin_000041


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Anaerovoracaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: Anaerovoracaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: 4d0eff97-7de3-49ad-953d-66426f0db4f8-asg-MAGScoT_cleanbin_000002


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

characteristic: collecting institution

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: uncultured Saccharofermentans sp.

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: uncultured Saccharofermentans sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 009b34df-6986-4c74-874c-2c53a54848ac-asg-MAGScoT_cleanbin_000005


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Syntrophomonadaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: Syntrophomonadaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: taxonomic novelty determined using RED

text: d6309e7a-5f4a-4193-8fe6-a21da7285db0-asg-MAGScoT_cleanbin_000024


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

text: Department of Biochemistry, University of Cambridge, Cambridge, UK

characteristic: collecting institution

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: Syntrophomonadaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Syntrophomonadaceae bacterium

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 32138776-0d38-4271-bf41-091d699cdbfd-asg-MAGScoT_cleanbin_000004


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cambridge | University of Cambridge | Department of Biochemistry | Hopkins Building

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Anaeromusa sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: uncultured Anaeromusa sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: 423aa38a-05bb-4dba-a328-1f18f907f8f2-asg-MAGScoT_cleanbin_000011


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

characteristic: collecting institution

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: Selenomonadaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Selenomonadaceae bacterium

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: taxonomic classification fully defined by topology

text: 4fda78c2-e908-4b87-bee1-7819ea9ca0c8-asg-MAGScoT_cleanbin_000009


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Bournemouth University, Bournemouth, United Kingdom | Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Erysipelotrichaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: United Kingdom | Dorset | Wareham | East Stoke | East Stoke Fen Nature Reserve

text: ASG

text: NOT PROVIDED

text: A pole-mounted beaker was used to collect aquatic sediment from a freshwater pond

text: Erysipelotrichaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: ANI

text: b76e8e24-d245-4307-a20e-d676278d155c-asg-MAGScoT_cleanbin_000044


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

characteristic: collecting institution

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: Candidatus Gracilibacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Candidatus Gracilibacteria bacterium

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

text: taxonomic classification defined by topology and ANI

text: 3657eba1-8dd3-48ff-b7f3-7c2c16b724d5-asg-MAGScoT_cleanbin_000099


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Thermoguttaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: Thermoguttaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: taxonomic novelty determined using RED

text: 5d2646e0-01ad-46f9-a460-09296c79865c-asg-MAGScoT_cleanbin_000069


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

text: Department of Biochemistry, University of Cambridge, Cambridge, UK

characteristic: collecting institution

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: uncultured Hylemonella sp.

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: uncultured Hylemonella sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 21504618-22a4-409c-8451-9c93a3fdc467-asg-MAGScoT_cleanbin_000051


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cambridge | University of Cambridge | Department of Biochemistry | Hopkins Building

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Rhodoferax sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: uncultured Rhodoferax sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: 49b59fb4-daa7-4e94-af7b-87cd5f6ac65d-asg-MAGScoT_cleanbin_000016


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

characteristic: collecting institution

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: uncultured Tolumonas sp.

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: uncultured Tolumonas sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 8f464e4a-fedb-41da-893e-74a4d5da0fea-asg-MAGScoT_cleanbin_000006


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

text: aquatic biome

text: WILLIAM LEWIS

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: Urostomides striatus

characteristic: host scientific name

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Urostomides striatus

text: freshwater biome

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Treponemataceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: NOT PROVIDED

text: Treponemataceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: taxonomic classification fully defined by topology

text: 08f406a1-65ce-4a28-8a1b-b7e70c6c0ca5-asg-MAGScoT_cleanbin_000058


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: WILLIAM LEWIS

characteristic: collecting institution

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

text: ciliate culture

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: Urostomides striatus

characteristic: host taxid

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Bournemouth University, Bournemouth, United Kingdom | Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom

text: metagenome-assembled genome

text: Ciliate: Urostomides striatus

text: freshwater biome

characteristic: local environmental context

text: ciliate metagenome

text: Treponemataceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Treponemataceae bacterium

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 6a85829b-35e2-45d0-a737-03f494f2811a-asg-MAGScoT_cleanbin_000071


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT COLLECTED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic biome

text: MONIKA BRIGHT

characteristic: collected by

text: University of Vienna

characteristic: collection date

text: ciliate culture

characteristic: environmental medium

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piran

characteristic: geographic location (region and locality)

text: aquarium

text: adult

characteristic: host life stage

text: Zoothamnium niveum

characteristic: host scientific name

text: not collected

characteristic: host sex

text: MONIKA BRIGHT

characteristic: identified by

text: University of Vienna

text: marine biome

text: ciliate metagenome

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ciliate metagenome

characteristic: specimen id

text: N

characteristic: symbiont

text: 964a58e2-a5ac-4991-8dd1-d6c559b83337-asg-metagenome

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT COLLECTED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MONIKA BRIGHT

text: University of Vienna

characteristic: collecting institution

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

text: Slovenia

text: Piran

text: aquarium

characteristic: habitat

text: adult

text: Zoothamnium niveum

text: not collected

characteristic: host taxid

text: MONIKA BRIGHT

text: University of Vienna

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Zoothamnium niveum

text: marine biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Bacteriovoracaceae bacterium

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Bacteriovoracaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: N

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: daa9ce67-6738-4adb-a2ee-a0fa827572f7-asg-MAGScoT_cleanbin_000003


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT COLLECTED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MONIKA BRIGHT

characteristic: collected by

text: University of Vienna

characteristic: collecting institution

characteristic: collection date

text: ciliate culture

characteristic: environmental medium

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Piran

characteristic: geographic location (region and locality)

text: aquarium

text: adult

characteristic: host life stage

text: Zoothamnium niveum

characteristic: host scientific name

text: not collected

characteristic: host sex

text: MONIKA BRIGHT

characteristic: identified by

text: University of Vienna

text: metagenome-assembled genome

text: Ciliate: Zoothamnium niveum

text: marine biome

text: ciliate metagenome

text: Aliishimia sp.

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

text: Aliishimia sp.

text: Pacbio Sequel II

characteristic: specimen id

text: N

characteristic: symbiont

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: 63f2f763-dbc6-40f9-b46a-ede5a66909dd-asg-MAGScoT_cleanbin_000001

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: NOT COLLECTED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MONIKA BRIGHT

characteristic: collected by

text: University of Vienna

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: ciliate culture

text: Slovenia

text: Piran

text: aquarium

characteristic: habitat

text: adult

text: Zoothamnium niveum

text: not collected

characteristic: host taxid

text: MONIKA BRIGHT

text: University of Vienna

text: metagenome-assembled genome

characteristic: investigation type

text: Ciliate: Zoothamnium niveum

text: marine biome

characteristic: local environmental context

text: ciliate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Sedimenticolaceae bacterium

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Sedimenticolaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: N

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: f4bb94ea-9fc2-483f-8044-eb9019788290-asg-MAGScoT_cleanbin_000002


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66781

tag: Namespace:Functional Urology Group, Department for BioMedical Research DBMR

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: BOO_22-2-1 _Bladder

characteristic: description

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: Functional Urology Group, Department for BioMedical Research DBMR

text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66782

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66783

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66784

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66785

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66786

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66787

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66788

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66789

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66790

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66791

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: public

text: ena-SAMPLE-TAB-21-09-2023-16:17:50:468-66792

text: human

text: Switzerland

text: Homo sapiens

text: Homo sapiens


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Agona


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

text: KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: public

tag: Namespace:Centre for Discovery Brain Sciences, University of Edinburgh

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: microglia

text: not collected

text: house mouse

characteristic: common name

text: Protocols: Microglia were isolated by enzymatic digestion and fluorescence-activated cell sorting from brains of 12-month-old male and female mice. RNA was purified using RNEasy Plus Micro kits (Qiagen) according to manufacturer’s instructions. RNA was pooled from 1-4 animals within the same experimental group. RNA within pools was equally distributed in amount between the animals. 1 ng of total RNA was taken forward for low-input RNA sequencing. cDNA was generated using TakaraBio SMART-Seq v4 Ultra Low Input RNA kit before input into the Illumina Nextera XT library preparation.

text: adult

characteristic: developmental stage

text: Cst7 +/+, APP wt/wt

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Discovery Brain Sciences, University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: microglia

text: not collected

text: house mouse

text: adult

text: Cst7 +/+, APP wt/wt

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male

characteristic: strain


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: microglia

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Cst7 +/+, APP wt/wt

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: microglia

text: not collected

text: house mouse

text: adult

characteristic: developmental stage

text: Cst7 +/+, APP tg/tg

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: microglia

text: not collected

text: house mouse

text: adult

text: Cst7 +/+, APP tg/tg

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: microglia

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Cst7 -/-, APP tg/tg

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: microglia

text: not collected

text: house mouse

text: adult

characteristic: developmental stage

text: Cst7 -/-, APP tg/tg

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: Submitter Id

text: Great Ormond Street Hospital (Gosh)

characteristic: collecting institution

text: Great Ormond Street Hospital (Gosh)

characteristic: collector name

text: United Kingdom

text: London

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

text: Clinical

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: Great Ormond Street Hospital (Gosh)

characteristic: collection date

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: London

text: human

text: diseased

text: homo sapien

text: Homo sapiens

text: female

characteristic: isolate

text: Clinical

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Great Ormond Street Hospital (Gosh)

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

text: London

text: human

text: not provided

text: homo sapien

text: Homo sapiens

text: male

text: Clinical


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: Submitter Id

text: Great Ormond Street Hospital (Gosh)

characteristic: collecting institution

text: Great Ormond Street Hospital (Gosh)

characteristic: collector name

text: United Kingdom

text: London

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: Homo sapiens

text: female

text: Clinical


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: Great Ormond Street Hospital (Gosh)

characteristic: collection date

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: London

text: human

text: healthy

text: homo sapien

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Clinical


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Great Ormond Street Hospital (Gosh)

text: not provided

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

text: London

text: human

text: not provided

text: homo sapien

text: Homo sapiens

text: male

text: Clinical

characteristic: organism

characteristic: title


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Great Ormond Street Hospital (Gosh)

characteristic: collecting institution

text: not provided

text: Great Ormond Street Hospital (Gosh)

characteristic: collector name

text: United Kingdom

text: London

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

text: homo sapien

text: Homo sapiens

text: female

text: Clinical


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: Great Ormond Street Hospital (Gosh)

characteristic: collection date

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: London

text: human

text: healthy

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: Homo sapiens

text: female

characteristic: host sex

text: Clinical


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Great Ormond Street Hospital (Gosh)

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

text: London

text: human

text: diseased

text: homo sapien

text: Homo sapiens

text: not provided

characteristic: host subject id

characteristic: isolate

text: Clinical


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Great Ormond Street Hospital (Gosh)

characteristic: collecting institution

text: Great Ormond Street Hospital (Gosh)

characteristic: collector name

text: United Kingdom

text: London

text: human

text: not provided

text: homo sapien

text: Homo sapiens

text: not provided

text: Clinical

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: Great Ormond Street Hospital (Gosh)

text: not provided

characteristic: collection date

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: London

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapien

text: Homo sapiens

text: not provided

text: Clinical


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Great Ormond Street Hospital (Gosh)

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

text: London

text: human

text: healthy

text: homo sapien

characteristic: host scientific name

text: Homo sapiens

text: not provided

characteristic: host sex

text: Clinical


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Great Ormond Street Hospital (Gosh)

characteristic: collecting institution

text: Great Ormond Street Hospital (Gosh)

characteristic: collector name

text: United Kingdom

text: London

text: human

text: diseased

text: homo sapien

text: Homo sapiens

text: other

characteristic: host subject id

characteristic: isolate

text: Clinical


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: Great Ormond Street Hospital (Gosh)

text: missing: control sample

characteristic: collection date

text: Great Ormond Street Hospital (Gosh)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: London

characteristic: geographic location (region and locality)

text: Negative Control

text: missing: control sample

text: Negative Control

text: not provided

text: Negative Control

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:University clinic Duesseldorf

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

text: not collected


text: CEH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: terrestrial biome

characteristic: broad-scale environmental context

text: metagenome

characteristic: common name

unit: m

characteristic: depth

characteristic: elevation

text: soil

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassland

characteristic: local environmental context

text: the organic carbon and total carbon units are incorrect. Values are percentage, but this is not allowed

characteristic: note

unit: µg/L

characteristic: organic matter

text: metagenome

characteristic: pH

text: water

characteristic: pH method

characteristic: project name

text: metagenome

text: metagenome

unit: g/kg

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: terrestrial biome

characteristic: collection date

text: metagenome

text: soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Woodland

text: metagenome

characteristic: organism

text: water

text: metagenome

text: metagenome

characteristic: title


E-MTAB-13365:Sample 1

text: University of the District of Columbia

text: public

characteristic: SRA accession

text: E-MTAB-13365:Sample 1

tag: Namespace:University of the District of Columbia

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: The river soil samples were collected in 50 mL sterile conical tubes, in triplicate, at a distance of 3-5 meters from the banks of the Potomac River and a 6-inch depth from the soil surface. Ethanol and paper towels were used interchangeably between each soil sample collection to ensure clean, sterile tools. Samples were transported to the laboratory within an hour of collection and stored in a -20°C refrigerator until further processed. The tubes were ultrasonicated for 1 minute each to achieve cell disruption. Extraction was completed using a Qiagen DNeasy Power Soil kit protocol. Approximately 0.25g of each soil sample was weighed and recorded. To achieve cell disruption, the samples were ultrasonicated for 1 minute each. Samples were then stored at -20°C until PCR was performed. Nanodrop was used to confirm the quality and concentration of the DNA obtained from the soil samples. DNA products were PCR amplified using primers “515F–806R” targeting the V4 region of the 16S SSU rRNA - used by the Earth Microbiome Project. Primer sequences are as follows: 515F (Parada)–806R (Apprill), F: GTGYCAGCMGCCGCGGTAA; R: GGACTACNVGGGTWTCTAAT. Primers and primer constructs were designed by Greg Caporaso. Modifications to primer degeneracy were done by the labs of Jed Furhman and Amy Apprill. Forward-barcoded constructs were redesigned by Walters. Amplification conditions were performed in a 25 µl reaction volume and consisted of 13 µL nuclease-free water, 10 µL of 2x PCR master mix, 0.5 µL forward primer, 0.5 µL reverse primer, 1 µL soil DNA. The thermal cycle was programmed for 120 seconds at 94°C as initial denaturation, followed by 35 cycles of 45 sec at 94°C for denaturation, 60 sec at 50 °C as annealing, 90 sec at 72 °C for extension, and a final extension at 72 °C for 10 min.

characteristic: description

text: not collected

text: Latitude:38.8821 Longitude: -77.0281

characteristic: geographical location

text: not applicable

characteristic: isolate

text: mixed sample

text: mixed sample

text: soil metagenome

characteristic: sample

text: mixed sample

text: Sample 1


E-MTAB-13365:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of the District of Columbia

text: public

text: E-MTAB-13365:Sample 10

text: ArrayExpress

text: not collected

text: not collected

text: Latitude: 38.885904 Longitude: -77.049705

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 10


E-MTAB-13365:Sample 11

characteristic: External Id

text: University of the District of Columbia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13365:Sample 11

text: ArrayExpress

text: not collected

text: not collected

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 11


E-MTAB-13365:Sample 12

text: University of the District of Columbia

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13365:Sample 12

text: ArrayExpress

text: not collected

characteristic: collection date

text: not collected

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 12


E-MTAB-13365:Sample 2

text: University of the District of Columbia

text: public

text: E-MTAB-13365:Sample 2

text: ArrayExpress

text: not collected

text: not collected

characteristic: geographic location (country and/or sea)

text: Latitude:38.8821 Longitude: -77.0281

text: not applicable

text: mixed sample

characteristic: organism

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 2

characteristic: title


E-MTAB-13365:Sample 3

text: University of the District of Columbia

text: public

characteristic: SRA accession

text: E-MTAB-13365:Sample 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

text: not collected

text: Latitude:38.8821 Longitude: -77.0281

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 3


E-MTAB-13365:Sample 4

text: University of the District of Columbia

text: public

text: E-MTAB-13365:Sample 4

text: ArrayExpress

text: not collected

characteristic: description

text: not collected

text: Latitude: 38.900559 Longitude: -77.058686

characteristic: geographical location

text: not applicable

characteristic: isolate

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 4


E-MTAB-13365:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of the District of Columbia

text: public

text: E-MTAB-13365:Sample 5

text: ArrayExpress

text: not collected

text: not collected

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

characteristic: sample

text: mixed sample

text: Sample 5


E-MTAB-13365:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of the District of Columbia

characteristic: INSDC center name

text: public

text: E-MTAB-13365:Sample 6

text: ArrayExpress

text: not collected

text: not collected

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 6


E-MTAB-13365:Sample 7

text: University of the District of Columbia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13365:Sample 7

text: ArrayExpress

text: not collected

text: not collected

text: Latitude: 38.87792 Longitude: -77.03797

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 7


E-MTAB-13365:Sample 8

text: University of the District of Columbia

text: public

text: E-MTAB-13365:Sample 8

text: ArrayExpress

text: not collected

characteristic: collection date

text: not collected

characteristic: geographic location (country and/or sea)

text: Latitude: 38.87795 Longitude: -77.03794

text: not applicable

text: mixed sample

characteristic: organism

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 8


E-MTAB-13365:Sample 9

text: University of the District of Columbia

text: public

characteristic: SRA accession

text: E-MTAB-13365:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: not collected

text: Latitude: 38.87795 Longitude: -77.03794

text: not applicable

text: mixed sample

text: mixed sample

text: soil metagenome

text: mixed sample

text: Sample 9

characteristic: title


text: public

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Denmark

text: not provided

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Denmark

text: not provided

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Finnish Institute for Health and Welfare

characteristic: Submitter Id

characteristic: collection date

text: S. Typhimurium outbreak in 2021

characteristic: description

text: Finland

characteristic: geographic location (country and/or sea)

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

text: S.Typhimurium

characteristic: title


text: Finnish Institute for Health and Welfare

text: public

text: S. Typhimurium outbreak in 2021

text: Finland

text: S.Typhimurium


text: public

text: 107301:733dca9f-1d24-4325-96bb-b9429c5ff71a

tag: Namespace:Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

text: ocean biome [ENVO:01000048]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: depth

text: marine sediment core samples

characteristic: elevation

text: marine sediment [ENVO:03000033]

characteristic: environmental medium

text: sediment

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bering Sea

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: undersea feature [ENVO:00000104]

characteristic: local environmental context

text: marine sediment metagenome

text: sedDNA Bering Sea

characteristic: project name

text: marine sediment core samples

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: NextSeq 2000

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 107300:733dca9f-1d24-4325-96bb-b9429c5ff71a

characteristic: Submitter Id

text: ocean biome [ENVO:01000048]

text: GFBIO

characteristic: collection date

text: marine sediment core samples

characteristic: description

text: marine sediment [ENVO:03000033]

text: sediment

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: Bering Sea

text: metagenome

text: undersea feature [ENVO:00000104]

text: marine sediment metagenome

characteristic: organism

text: sedDNA Bering Sea

text: marine sediment core samples

text: marine sediment metagenome

text: sediment

text: NextSeq 2000

text: true

text: JK138L-7_JK138_StB078_KL77-2_1157_123340_sample

characteristic: title


text: public

text: 107299:733dca9f-1d24-4325-96bb-b9429c5ff71a

text: ocean biome [ENVO:01000048]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: depth

text: marine sediment core samples

characteristic: elevation

text: marine sediment [ENVO:03000033]

characteristic: environmental medium

text: sediment

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bering Sea

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: undersea feature [ENVO:00000104]

characteristic: local environmental context

text: marine sediment metagenome

text: sedDNA Bering Sea

characteristic: project name

text: marine sediment core samples

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: NextSeq 2000

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: JK138L-6_JK138_StB076_KL77-2_1133_121250_sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 107298:733dca9f-1d24-4325-96bb-b9429c5ff71a

characteristic: Submitter Id

text: ocean biome [ENVO:01000048]

text: GFBIO

characteristic: collection date

text: marine sediment core samples

characteristic: description

text: marine sediment [ENVO:03000033]

text: sediment

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: Bering Sea

text: metagenome

text: undersea feature [ENVO:00000104]

text: marine sediment metagenome

characteristic: organism

text: sedDNA Bering Sea

text: marine sediment core samples

text: marine sediment metagenome

text: sediment

text: NextSeq 2000

text: true

text: JK138L-4_JK138_StB072_KL77-2_1033_106790_sample

characteristic: total depth of water column


text: public

text: 107297:733dca9f-1d24-4325-96bb-b9429c5ff71a

text: ocean biome [ENVO:01000048]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: depth

text: marine sediment core samples

characteristic: elevation

text: marine sediment [ENVO:03000033]

characteristic: environmental medium

text: sediment

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bering Sea

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: undersea feature [ENVO:00000104]

characteristic: local environmental context

text: marine sediment metagenome

text: sedDNA Bering Sea

characteristic: project name

text: marine sediment core samples

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: NextSeq 2000

characteristic: sequencing method

text: true

text: JK138L-3_JK138_StB088_KL77-2_984_101130_sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 107296:733dca9f-1d24-4325-96bb-b9429c5ff71a

characteristic: Submitter Id

text: ocean biome [ENVO:01000048]

text: GFBIO

characteristic: collection date

text: marine sediment core samples

characteristic: description

text: marine sediment [ENVO:03000033]

text: sediment

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: Bering Sea

text: metagenome

text: undersea feature [ENVO:00000104]

text: marine sediment metagenome

characteristic: organism

text: sedDNA Bering Sea

text: marine sediment core samples

text: marine sediment metagenome

text: sediment

text: NextSeq 2000

text: true

characteristic: submitted to insdc

text: JK138L-2_JK138_StB086_KL77-2_973_99590_sample


text: public

text: 107295:733dca9f-1d24-4325-96bb-b9429c5ff71a

text: ocean biome [ENVO:01000048]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

characteristic: depth

text: marine sediment core samples

characteristic: elevation

text: marine sediment [ENVO:03000033]

characteristic: environmental medium

text: sediment

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bering Sea

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: undersea feature [ENVO:00000104]

characteristic: local environmental context

text: marine sediment metagenome

text: sedDNA Bering Sea

characteristic: project name

text: marine sediment core samples

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: NextSeq 2000

characteristic: sequencing method

text: true

text: JK138L-1_JK138_StB084_KL77-2_933_94000_sample

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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