E-MTAB-13426:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13426:Sample 23

text: ArrayExpress

text: not collected

text: Norway rat

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: feces

text: gut metagenome

characteristic: protocol

text: Rattus norvegicus

text: male

characteristic: sex

text: paclitaxel injections

characteristic: stimulus

text: SD

characteristic: strain

text: Sample 23

characteristic: title


E-MTAB-13426:Sample 24

status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13426:Sample 24

tag: Namespace:The First Hospital of China Medical University

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Norway rat

characteristic: common name

text: Protocols: Rat fecal samples were collected sterilely at day 14 and day 28 after the initiation of paclitaxel or vehicle treatments and stored at −80°C. Fecal DNA were extracted with the QIAamp DNA Stool Mini Kit (QIAGEN) and sequenced using tagged amplicon spanning the V3 to V4 region of bacterial 16S rRNA of approximately 540 bp using the Illumina MiSeq sequencer. Sequencing libraries were prepared using Illumina's TruSeq Nano DNA LT Library Prep Kit.1) First perform sequence end repair on the above amplified product, use the End Repair Mix2 in the kit to remove the overhanging base at the 5' end of the DNA sequence, and at the same time add a phosphate group to fill in the missing base at the 3' end;2) Add an A base to the 3’ end of the DNA sequence to prevent the DNA fragments from self-ligating and ensure that the target sequence can be connected to the sequencing adapter (there is a protruding T base at the 3’ end of the sequencing adapter);3) Add a sequencing adapter containing a library-specific tag (i.e. Index sequence) to the 5’ end of the sequence so that DNA molecules can be fixed on the Flow Cell;4) Use BECKMAN AMPure XP Beads to remove self-ligated adapter fragments through magnetic bead screening, and purify the library system after adding adapters;5) Perform PCR amplification of the above-mentioned adapter-connected DNA fragments to enrich the sequencing library template, and use BECKMAN AMPure XP Beads to purify the library enrichment product again;6) Perform final fragment selection and purification of the library through 2% agarose gel electrophoresis.

characteristic: description

text: paclitaxel-induced peripheral neuropathy

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: feces

characteristic: organism substance

text: gut metagenome

text: Rattus norvegicus

text: male

text: paclitaxel injections

text: SD

text: Sample 24


E-MTAB-13426:Sample 25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The First Hospital of China Medical University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13426:Sample 25

text: ArrayExpress

text: not collected

text: Norway rat

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: feces

text: gut metagenome

characteristic: protocol

text: Rattus norvegicus

text: male

characteristic: sex

text: paclitaxel injections

characteristic: stimulus

text: SD

characteristic: strain

text: Sample 25

characteristic: title


E-MTAB-13426:Sample 26

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13426:Sample 26

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Norway rat

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: feces

text: gut metagenome

text: Rattus norvegicus

text: male

text: paclitaxel injections

text: SD

text: Sample 26


E-MTAB-13426:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-13426:Sample 3

text: ArrayExpress

text: not collected

text: Norway rat

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: feces

characteristic: organism substance

text: gut metagenome

text: Rattus norvegicus

text: male

text: SD

text: Sample 3


E-MTAB-13426:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13426:Sample 4

text: ArrayExpress

text: not collected

text: Norway rat

text: normal

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: feces

text: gut metagenome

characteristic: protocol

text: Rattus norvegicus

text: male

characteristic: sex

characteristic: stimulus

text: SD

characteristic: strain

text: Sample 4

characteristic: title


E-MTAB-13426:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13426:Sample 5

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Norway rat

text: normal

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: feces

text: gut metagenome

text: Rattus norvegicus

text: male

text: SD

text: Sample 5


E-MTAB-13426:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-13426:Sample 6

text: ArrayExpress

text: not collected

text: Norway rat

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: feces

characteristic: organism substance

text: gut metagenome

text: Rattus norvegicus

text: male

text: SD

text: Sample 6


E-MTAB-13426:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13426:Sample 7

text: ArrayExpress

text: not collected

text: Norway rat

text: normal

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: feces

text: gut metagenome

characteristic: protocol

text: Rattus norvegicus

text: male

characteristic: sex

characteristic: stimulus

text: SD

characteristic: strain

text: Sample 7

characteristic: title


E-MTAB-13426:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13426:Sample 8

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Norway rat

text: normal

text: not collected

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: feces

text: gut metagenome

text: Rattus norvegicus

text: male

text: SD

text: Sample 8


E-MTAB-13426:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-13426:Sample 9

text: ArrayExpress

text: not collected

text: Norway rat

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: feces

characteristic: organism substance

text: gut metagenome

text: Rattus norvegicus

text: male

text: SD

text: Sample 9


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University Hospital Basel

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

text: Pascal Schläpfer, Yi-Wen Lim, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_a9454343/2023

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_34329ed2/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_354f1c1a/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

tag: Namespace:Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: SIB

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17886/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17881/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_87e87f99/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17898/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17875/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_00fe2e8d/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17887/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_6cf13df7/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

text: Pascal Schläpfer, Yi-Wen Lim, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_a556d679/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_b78473dc/2023

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_e08cbd8a/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_dbe0aedf/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_b55fe380/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

characteristic: collection date

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17899/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17853/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17854/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_1432427f/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_90207ecb/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17878/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Pascal Schläpfer, Yi-Wen Lim, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_a6605dce/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_c3cc714f/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_85b1e8e5/2023

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17890/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17885/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_a8d075d6/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_8d1d9f31/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

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text: University Hospital Basel

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17860/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_62ec0c49/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_02d0089f/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_e4d3590f/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

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text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17894/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: SIB

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17884/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: SIB

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text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17889/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17896/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17883/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collection date

text: Pascal Schläpfer, Yi-Wen Lim, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_e63a8286/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17867/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance not initiated by an outbreak


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_9006a430/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

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text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_1104ebe7/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_a401998d/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_259ba021/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_cf3ad382/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17874/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_feeb9d5a/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

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text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_0abd0e41/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17864/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_8f55901c/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Pascal Schläpfer, Yi-Wen Lim, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_23d42e51/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17879/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_17e8ad15/2023

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17882/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_3c7553ca/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: University Psychiatric Clinics Basel, Basel, Switzerland

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-UHB-USB_2023_10_09_09752e89/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_62d2ceaa/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17869/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_f9996204/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_6018d033/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17848/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Pascal Schläpfer, Yi-Wen Lim, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_84f8c11d/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17855/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_e6ddcc1e/2023

characteristic: organism

text: active surveillance not initiated by an outbreak


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_32d5080d/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_82ba0cdc/2023

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_7d1ead14/2023

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_8d1ddbeb/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-USB_2023_10_09_b56f01ef/2023

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17856/2023

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-USB_2023_10_09_3ecc5694/2023

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: George Turner | Milan Malinski | Hannes Svardal | Alexandra Tyers | Mingliu Du | Mexford Mulumpwa

text: Bangor University, Bangor, Gwynedd, North Wales, LL57 2UW, UK | Wellcome Sanger Institute, University of Basel | Wellcome Sanger Institute, University of Cambridge, University of Antwerp | Bangor University | Wellcome Sanger Institute | Malawi Department of Fisheries

characteristic: collection date

text: zebra mbuna

characteristic: common name

text: Malawi

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Kampango point

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia zebra

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Maylandia zebra

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collecting institution

text: zebra mbuna

text: Malawi

text: Lake Malawi | Nkhata Bay | Viking reef

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Maylandia zebra

text: FEMALE

text: NOT APPLICABLE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia sp. 'zebra gold'

text: WHOLE ORGANISM

text: ToL

text: Maylandia sp. 'zebra gold'

text: MALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Malawi

text: Lake Malawi | Nkhata Bay | Viking reef

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Maylandia callainos

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

text: Lake Malawi | Chilumba | Ngara

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Lethrinops furcifer

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Lethrinops furcifer

text: FEMALE

text: NOT APPLICABLE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: collection date

text: zebra mbuna

characteristic: common name

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Viking reef

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia zebra

text: WHOLE ORGANISM

text: ToL

text: Maylandia zebra

text: MALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

text: Lake Malawi | Nkhata Bay | Viking reef

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia sp. 'zebra gold'

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Maylandia sp. 'zebra gold'

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: zebra mbuna

characteristic: common name

text: Malawi

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

characteristic: organism

text: FIN

characteristic: sample derived from

text: Maylandia zebra

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebra mbuna

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Viking reef

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia zebra

text: FIN

characteristic: organism part

text: Maylandia zebra

text: FEMALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Malawi

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia sp. 'zebra gold'

text: FIN

characteristic: project name

text: Maylandia sp. 'zebra gold'

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

characteristic: geographic location (country and/or sea)

text: Lake Malawi | Nkhata Bay | Viking reef

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

characteristic: organism

text: FIN

characteristic: sample derived from

text: Maylandia callainos

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lake Malawi | Chilumba | Ngara

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Lethrinops furcifer

text: FIN

characteristic: organism part

text: Lethrinops furcifer

text: FEMALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: zebra mbuna

characteristic: common name

text: Malawi

text: Lake Malawi | Nkhata Bay | Viking reef

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

text: FIN

characteristic: project name

text: Maylandia zebra

text: MALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Lake Malawi | Nkhata Bay | Viking reef

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia sp. 'zebra gold'

characteristic: organism

text: FIN

characteristic: sample derived from

text: Maylandia sp. 'zebra gold'

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Malawi

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Viking reef

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia callainos

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Maylandia callainos

text: FEMALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collecting institution

text: Malawi

characteristic: geographic location (country and/or sea)

text: Lake Malawi | Nkhata Bay | Playground point

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: juvenile

text: Mylochromis ericotaenia

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Mylochromis ericotaenia

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Malawi

characteristic: geographic location (latitude)

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Maylandia callainos

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: Submitter Id

characteristic: collection date

text: Malawi

characteristic: geographic location (longitude)

text: Lake Malawi | Nkhata Bay | Viking reef

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia callainos

text: FIN

characteristic: organism part

characteristic: sample derived from

text: Maylandia callainos

text: FEMALE

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Malawi

characteristic: geographic location (country and/or sea)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: juvenile

text: Mylochromis ericotaenia

text: FIN

characteristic: project name

text: Mylochromis ericotaenia

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Malawi

characteristic: geographic location (latitude)

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

characteristic: organism

text: FIN

text: Maylandia callainos

text: MALE

text: NOT APPLICABLE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

text: Malawi

characteristic: geographic location (longitude)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia callainos

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Maylandia callainos

text: FEMALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: SRA accession

text: Malawi

characteristic: geographic location (country and/or sea)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia callainos

text: FIN

characteristic: project name

characteristic: sample derived from

text: Maylandia callainos

text: FEMALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Malawi

characteristic: geographic location (latitude)

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia sp. 'zebra gold'

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Maylandia sp. 'zebra gold'

text: FEMALE

text: NOT APPLICABLE

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: collecting institution

text: zebra mbuna

characteristic: common name

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia zebra

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Maylandia zebra

text: NOT COLLECTED

text: NOT APPLICABLE

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: zebra mbuna

text: Malawi

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

text: FIN

characteristic: project name

characteristic: sample derived from

text: Maylandia zebra

text: NOT COLLECTED

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: collecting institution

text: Malawi

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia sp. 'zebra gold'

characteristic: organism

text: FIN

text: Maylandia sp. 'zebra gold'

text: FEMALE

text: NOT APPLICABLE

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: zebra mbuna

characteristic: common name

text: Malawi

characteristic: geographic location (longitude)

text: NOT COLLECTED

characteristic: habitat

text: GEORGE TURNER

text: Bangor University

text: adult

characteristic: lifestage

text: Maylandia zebra

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Maylandia zebra

text: FEMALE

text: NOT APPLICABLE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: collecting institution

text: zebra mbuna

text: Malawi

characteristic: geographic location (country and/or sea)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia zebra

text: FIN

characteristic: project name

characteristic: sample derived from

text: Maylandia zebra

text: FEMALE

characteristic: sex

text: NOT APPLICABLE

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Malawi

characteristic: geographic location (latitude)

text: Lake Malawi | Chiofu | sout of main bay on rocks

characteristic: geographic location (region and locality)

text: NOT COLLECTED

text: GEORGE TURNER

text: Bangor University

text: adult

text: Maylandia estherae

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Maylandia estherae

text: FEMALE

text: NOT APPLICABLE

text: N

characteristic: title