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text: Shenzhen Puensum Genetech Institute

text: public

tag: Namespace:Shenzhen Puensum Genetech Institute

text: feces

characteristic: broad-scale environmental context

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characteristic: environmental medium

text: China

unit: DD

characteristic: geographic location (latitude)

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characteristic: local environmental context

text: human gut metagenome

characteristic: project name

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Shenzhen Puensum Genetech Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: feces

text: gut metagenome of IBD patients

text: feces

text: China

text: feces

text: human gut metagenome

text: human gut metagenome


text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Tree of Life Programme

text: aquatic biome

text: RODRIGO COSTA

characteristic: collected by

text: UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES

characteristic: collecting institution

unit: m

characteristic: depth

text: adult sponge tissue

text: Portugal

text: Pedra da Greta

characteristic: geographic location (region and locality)

text: Coastal Seawater

characteristic: habitat

text: adult

characteristic: host life stage

text: Sarcotragus spinosulus

characteristic: host scientific name

characteristic: host taxid

text: JORGE GONÇALVES

characteristic: identified by

text: CENTRE OF MARINE SCIENCES

text: marine benthic biome

text: sponge metagenome

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: sponge metagenome

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: 073fb94c-606f-414b-aed5-673662664db9-asg-metagenome

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: RODRIGO COSTA

characteristic: collected by

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

characteristic: environmental medium

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Pedra da Greta

text: Coastal Seawater

text: adult

text: Sarcotragus spinosulus

text: JORGE GONÇALVES

text: CENTRE OF MARINE SCIENCES

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Sarcotragus spinosulus

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Nitrosopumilus sp.

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

text: Nitrosopumilus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: bf81c012-beaf-474a-be68-0c8cdfd0cf26-asg-MAGScoT_cleanbin_000075


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: RODRIGO COSTA

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: adult sponge tissue

text: Portugal

text: Pedra da Greta

characteristic: geographic location (region and locality)

text: Coastal Seawater

characteristic: habitat

text: adult

characteristic: host life stage

text: Sarcotragus spinosulus

characteristic: host scientific name

characteristic: host taxid

text: JORGE GONÇALVES

characteristic: identified by

text: CENTRE OF MARINE SCIENCES

text: metagenome-assembled genome

text: Sponge: Sarcotragus spinosulus

text: marine benthic biome

text: sponge metagenome

text: Nitrosopumilus sp.

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Nitrosopumilus sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: 9c13de17-987e-4c8b-a2b5-8cdaa069959e-asg-MAGScoT_cleanbin_000094