E-MTAB-12937:Sample 23

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: PPARa siRNA

text: E-MTAB-12937:Sample 23

text: ArrayExpress

text: hMADS

text: fat cell

text: human

text: Homo sapiens

text: Homo sapiens

text: multipotent adipose-derived stem cell

text: PPARa+R

text: Homo sapiens

text: Rosiglitazone

text: Sample 23


E-MTAB-12937:Sample 24

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: PPARa siRNA

characteristic: RNA interference

characteristic: SRA accession

text: E-MTAB-12937:Sample 24

tag: Namespace:Institut de Biologie Valrose, iBV UMR CNRS 7277/Inserm 1091/Universite Cote d’Azur

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: hMADS

text: fat cell

text: human

characteristic: common name

text: Protocols: hMADS adipocytes were transfected with control siRNA (siGFP) at day 10. hMADS adipocytes were treated with transfection reagent only at day 10. hMADS adipocytes were not transfected at day 10. phenol chloroform extraction PolyA library construction

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: multipotent adipose-derived stem cell

characteristic: progenitor cell type

text: PPARa+R

characteristic: replicate

text: Homo sapiens

text: Rosiglitazone

characteristic: stimulus

text: Sample 24

characteristic: title


E-MTAB-12937:Sample 3

characteristic: ENA-LAST-UPDATE

text: Institut de Biologie Valrose, iBV UMR CNRS 7277/Inserm 1091/Universite Cote d’Azur

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12937:Sample 3

text: ArrayExpress

text: hMADS

text: fat cell

text: human

text: Protocols: hMADS adipocytes were transfected at day 10, with siRNA against PPAR alpha. hMADS adipocytes were transfected with control siRNA (siGFP) at day 10. hMADS adipocytes were treated with transfection reagent only at day 10. hMADS white adipocytes were converted to brown adipocytes at day 14 with 100 nM of Rosiglitazone for 4 days. phenol chloroform extraction PolyA library construction

text: Homo sapiens

text: Homo sapiens

text: multipotent adipose-derived stem cell

text: NT-R

text: Homo sapiens

text: Sample 3


E-MTAB-12937:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: E-MTAB-12937:Sample 4

text: ArrayExpress

text: hMADS

text: fat cell

text: human

text: Protocols: hMADS adipocytes were transfected at day 10, with siRNA against PPAR alpha. hMADS adipocytes were transfected with control siRNA (siGFP) at day 10. hMADS adipocytes were treated with transfection reagent only at day 10. phenol chloroform extraction PolyA library construction

text: Homo sapiens

text: Homo sapiens

text: multipotent adipose-derived stem cell

text: NT+R

text: Homo sapiens

text: Rosiglitazone

text: Sample 4


E-MTAB-12937:Sample 5

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-12937:Sample 5

text: ArrayExpress

text: hMADS

text: fat cell

text: human

text: Homo sapiens

text: Homo sapiens

text: multipotent adipose-derived stem cell

text: NT+R

text: Homo sapiens

text: Rosiglitazone

text: Sample 5


E-MTAB-12937:Sample 6

text: public

characteristic: SRA accession

text: E-MTAB-12937:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: hMADS

text: fat cell

text: human

text: Homo sapiens

text: Homo sapiens

text: multipotent adipose-derived stem cell

text: NT+R

text: Homo sapiens

text: Rosiglitazone

text: Sample 6


E-MTAB-12937:Sample 7

text: public

text: mock

characteristic: RNA interference

text: E-MTAB-12937:Sample 7

text: ArrayExpress

characteristic: broker name

text: hMADS

text: fat cell

text: human

characteristic: common name

text: Protocols: hMADS adipocytes were transfected at day 10, with siRNA against PPAR alpha. hMADS adipocytes were transfected with control siRNA (siGFP) at day 10. hMADS adipocytes were not transfected at day 10. hMADS white adipocytes were converted to brown adipocytes at day 14 with 100 nM of Rosiglitazone for 4 days. phenol chloroform extraction PolyA library construction

text: Homo sapiens

text: Homo sapiens

text: multipotent adipose-derived stem cell

text: NoSi-R

text: Homo sapiens

text: Sample 7


E-MTAB-12937:Sample 8

text: public

text: mock

text: E-MTAB-12937:Sample 8

text: ArrayExpress

text: hMADS

text: fat cell

text: human

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: multipotent adipose-derived stem cell

characteristic: progenitor cell type

text: NoSi-R

text: Homo sapiens

text: Sample 8


E-MTAB-12937:Sample 9

text: public

text: mock

text: E-MTAB-12937:Sample 9

text: ArrayExpress

text: hMADS

text: fat cell

text: human

text: Homo sapiens

text: Homo sapiens

text: multipotent adipose-derived stem cell

text: NoSi-R

characteristic: replicate

text: Homo sapiens

text: Sample 9

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF HELSINKI

characteristic: collection date

text: human

text: vagina

characteristic: environment (biome)

text: vaginal fornix

characteristic: environment (feature)

text: vaginal swab

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

characteristic: investigation type

text: Homo sapiens

text: Homo sapiens

text: illumina MiSeq

characteristic: sequencing method

text: HEMI - Control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: vagina

text: vaginal fornix

text: vaginal swab

text: Finland

text: human-vaginal

text: Homo sapiens

text: Homo sapiens

text: illumina MiSeq

text: HEMI - Sample


text: Cell line

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: Cell line

characteristic: PHENOTYPE

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: public

tag: Namespace:Center for Research in Agricultural Genomics (CRAG

text: Asian cultivated rice

text: genomic DNA rice leaves

characteristic: description

text: Oryza sativa

text: Oryza sativa


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Instituto de Tecnologia Quimica e Biologica Antonio Xavier - Universidade Nova de Lisboa (ITQB NOVA)

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: 14-day-old seedlings were treated 3 mg/mL of COM in 0.5 % DMSO in MiliQ water or the corresponding mock solution were added to each well. Seedlings were treated for 30 min, a total of two seedlings were collected and instantly frozen in liquid nitrogen. Arabidopsis thaliana Col-0 seedlings were germinated on solid MS media and after germination in liquid 1/2 MS media on an Aralab Fitoclima climate chamber with 150 μmol·s-1·m-2 light intensity, following a 10 h/14 h day/night cycle, under constant temperature of 20 °C and 60 % humidity. Total RNA was extracted at 4 ºC from two ground seedlings by addition of TRI reagent and chloroform, precipitated with isopropanol and washed with 70 % ethanol. Samples were subjected to DNase treatment using a TURBO DNA-free Kit (Ambion). Quantification and quality assessment of all RNA samples were evaluated on a TapeStation (Agilent). Libraries were generated at BGI according to the DNBSEQ stranded mRNA library system.

text: seedling development stage

characteristic: developmental stage

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole plant

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Instituto de Tecnologia Quimica e Biologica Antonio Xavier - Universidade Nova de Lisboa (ITQB NOVA)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole plant

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

text: University of Basel (IPNA)

characteristic: INSDC first public

text: public

tag: Namespace:University of Basel (IPNA)

characteristic: collection date

text: ancient TEN genome

text: Brazil

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: archeological

text: Treponema pallidum

characteristic: organism

text: Treponema pallidum

text: TPE

characteristic: strain


characteristic: ENA-CHECKLIST

text: University of Basel (IPNA)

text: public

text: ancient T. pallidum genome

characteristic: description

text: Brazil

text: Homo sapiens

text: archeological

text: Treponema pallidum

text: Treponema pallidum

text: T. pallidum

characteristic: title


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


Micro-Tom

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Micro-Tom

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: tomato

text: Red-fruited cultivated determinate dwart tomato

text: Germany

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: Glasshouse, supplemented with artifical light to give a 16 hours per day day length, Cocopeat substrate

characteristic: isolation and growth condition

text: Solanum lycopersicum

text: Tomato

characteristic: organism common name

text: 5 week old plant

characteristic: plant developmental stage

text: Cocopeat (soil)

characteristic: plant growth medium

text: Young, unexpanded leaves

characteristic: plant structure

text: Diploid

characteristic: ploidy

text: Sexual

characteristic: propagation

text: healthy

characteristic: sample health state

text: Solanum lycopersicum

text: Cultivar: Micro-Tom

characteristic: subspecific genetic lineage rank

text: Tomato cultivar Micro-Tom leaf sample


Maxeza

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: INSDC first public

text: public

text: Maxeza

characteristic: Submitter Id

characteristic: collection date

text: tomato

characteristic: common name

text: Red-fruited indeterminate cultivated truss tomato

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: glasshouse

text: Solanum lycopersicum

characteristic: organism

text: Tomato

text: 5 week old plant

text: Cocopeat (soil)

text: Young, unexpanded leaves

text: Diploid

text: Sexual

text: healthy

text: Solanum lycopersicum

text: Cultivar: Maxeza

text: Tomato cultivar Maxeza leaf sample

characteristic: title


text: CHRISTIAN MEDICAL COLLEGE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CHRISTIAN MEDICAL COLLEGE

text: Ceftriaxone resistant Salmonella Typhi outbreak in India 2022-2023

text: India

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC first public

text: public

tag: Namespace:IMPERIAL COLLEGE LONDON

text: LAC* 0846 mutant

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Staphylococcus aureus subsp. aureus USA300_FPR3757

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: Submitter Id

characteristic: collection date

text: LAC* 0846 supressor 1

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: LAC* 0846 supressor 2

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

characteristic: organism

text: Not provided

text: LAC*

characteristic: title


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LAC* 0846 supressor 3

text: United Kingdom

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

text: public

text: LAC* 0846 supressor 4

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

characteristic: isolate

text: not provided

text: not provided

text: Not provided

characteristic: serovar

text: LAC*

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC first public

text: public

text: LAC* 0846 supressor 5

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: Submitter Id

characteristic: collection date

text: LAC* 0846 supressor 6

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: LAC* 0846 supressor 7

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

characteristic: organism

text: Not provided

text: LAC*

characteristic: title


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LAC* 0846 supressor 8

text: United Kingdom

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

text: public

text: JE2 0846 mutant

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

characteristic: isolate

text: not provided

text: not provided

text: Not provided

characteristic: serovar

text: LAC*

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC first public

text: public

text: JE2 0846 supressor 1

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: Submitter Id

characteristic: collection date

text: JE2 0846 supressor 2

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: JE2 0846 supressor 3

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

characteristic: organism

text: Not provided

text: LAC*

characteristic: title


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

text: JE2 0846 supressor 4

text: United Kingdom

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

text: public

text: JE2 0846 supressor 5

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

characteristic: isolate

text: not provided

text: not provided

text: Not provided

characteristic: serovar

text: LAC*

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC first public

text: public

text: JE2 0846 supressor 6

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: Submitter Id

characteristic: collection date

text: JE2 0846 supressor 7

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: JE2 0846 supressor 8

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

characteristic: organism

text: Not provided

text: LAC*

characteristic: title


text: CHRISTIAN MEDICAL COLLEGE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: India

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Blood

text: Typhi


characteristic: ENA-CHECKLIST

text: INSERM U955

text: public

tag: Namespace:INSERM U955

text: human

characteristic: common name

text: France

text: Homo sapiens

text: Homo sapiens

text: CHCC-CC


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Department of Microbiology Hirszfeld Institute of Immunology and Experimental Therapy Polish Academy of Sciences

text: ArrayExpress

characteristic: broker name

text: Protocols: Bacterial cultures (70 ml BB-FBS) of H. pylori N6 wild-type and ΔHP1021 strains were grown under microaerobic conditions to OD600 of 0.8-1.0 and split into 2 sub-cultures of 35 ml each. The first sub-culture was crosslinked with 1% formaldehyde for 5 min immediately after opening the jar. The second culture was crosslinked after 25-minute incubation under aerobic conditions (air atmosphere, 37 °C, 140 rpm orbital shaking). The crosslinking reactions were stopped by treatment with 125 mM glycine for 10 min at room temperature. The cultures were centrifuged at 4700 × g for 10 min at 4 °C and washed twice with 30 ml of ice-cold 1 × PBS, followed by the same centrifugation step. Samples were resuspended in 1.1 ml IP buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.5, 5 mM EDTA, 0.5% vol/vol NP-40, 1.0% vol/vol Triton X-100) and sonicated (Ultraschallprozessor UP200s (0.6/50% power, 30 s ON-30 s OFF, ice bucket)) to reach 100-500 bp DNA fragment size. Next, the samples were centrifuged at 12000 × g for 10 min at 4 °C. 100 µl of the supernatant was used for input preparation. 900 µl of the supernatant was incubated with 30 µl of Sepharose Protein A (Rockland, PA50-00-0002) (pre-equilibrated in IP buffer) for 1 h at 4 °C on a rotation wheel. The samples were centrifuged 1000 × g for 2 min at 4 °C; the supernatants were incubated with 40 µg of the HP1021 antibody33 and incubated at 4 °C for 16 h on a rotation wheel. Subsequently, 100 µl of the Sepharose Protein A pre-equilibrated in IP buffer was added to the samples, and the binding reaction was performed for 4 h at 4 °C on a rotation wheel. The samples were centrifuged 1000 × g for 2 min at 4 °C, and the supernatant was discarded. The beads were washed four times with IP-wash buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 0.5 % NP-40, 0.1% SDS), twice with TE buffer (10 mM Tris-HCl, pH 8.0; 0.1 mM EDTA), resuspended in 180 µl of TE buffer, and treated with 20 µg/ml RNase A at 37 °C for 30 min. Next, crosslinks were reversed by adding SDS at a final concentration of 0.5% and proteinase K at a final concentration of 20 µg/ml, followed by incubation for 16 h at 37 °C. The beads were removed by centrifugation 1000 × g for 2 min at 4 °C, and the DNA from the supernatants were isolated with ChIP DNA Clean & Concentrator (Zymo Research). Input samples were treated like IP samples, starting from incubation with RNase A. The quality of DNA was validated by electrophoresis in 2% agarose gel, and the concentration was determined with QuantiFluor dsDNA System (Promega). The ChIP-DNA was isolated from three independent H. pylori cultures. The beads were removed by centrifugation 1000 × g for 2 min at 4 °C, and the DNA from the supernatants were isolated with ChIP DNA Clean & Concentrator (Zymo Research). Input samples were treated like IP samples, starting from incubation with RNase A. The quality of DNA was validated by electrophoresis in 2% agarose gel, and the concentration was determined with QuantiFluor dsDNA System (Promega). The ChIP-DNA was isolated from three independent Helicobacter pylori cultures. The DNA library preparation was performed at the Novogene Bioinformatics Technology Co. Ltd. (Cambridge, UK). The DNA fragments were repaired, A-tailed and further ligated with an Illumina adapter. The final DNA library was obtained by size selection and PCR amplification. The library was checked with Qubit and RT-qPCR for quantification and a bioanalyser for size distribution detection.

text: wild type genotype

characteristic: genotype

text: Helicobacter pylori

text: Helicobacter pylori

text: whole organism

characteristic: organism part

text: Helicobacter pylori

characteristic: strain


characteristic: External Id

text: Department of Microbiology Hirszfeld Institute of Immunology and Experimental Therapy Polish Academy of Sciences

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Helicobacter pylori

text: Helicobacter pylori

text: whole organism

text: Helicobacter pylori


characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Helicobacter pylori

characteristic: organism

text: Helicobacter pylori

text: whole organism

text: Helicobacter pylori

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: wild type genotype

text: Helicobacter pylori

text: Helicobacter pylori

text: whole organism

text: Helicobacter pylori

text: 21 percent oxygen

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: Helicobacter pylori

text: Helicobacter pylori

text: whole organism

text: Helicobacter pylori

text: 21 percent oxygen


characteristic: ENA-LAST-UPDATE

text: UKHSA

text: public

text: ena-SAMPLE-TAB-22-05-2023-15:57:03:879-15571

characteristic: collection date

text: PVL-

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

characteristic: isolate

text: Infected person

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: External Id

characteristic: INSDC first public

text: public

tag: Namespace:Umea university, department of molecular biology

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Twenty young adult animals were picked to the fresh plates and allowed to lay eggs for 2 hours, after which the adult animals were removed and eggs were allowed to develop into L4 stage. Ten plates of L4 animals were washed off and placed on either OP50 or V. cholerae containing plates for 8 hours. Subsequently, the animals were collected and rinsed three times with M9 buffer. After washing, the worm pellet was frozen in liquid nitrogen. Animals were homogenized using Bullet Blender (Next Advance) in the presence of Qiazol Lysis Reagent and 0.5mm Zirconia beads at 4°C. RNA was prepared using RNeasy Plus Universal Mini Kit (Qiagen). Library was constructed and sequenced by Novogene

text: L4 larva

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 20 individuals

characteristic: individual

text: Escherichia coli OP50

characteristic: infect

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

text: mixed

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Umea university, department of molecular biology

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: description

text: L4 larva

text: wild type genotype

text: mixed pool of 20 individuals

text: Escherichia coli OP50

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: mixed

characteristic: title


characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: L4 larva

characteristic: developmental stage

text: wild type genotype

text: mixed pool of 20 individuals

text: Vibrio cholerae

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: mixed


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Uppsala University / Department of Ecology and Genetics

text: aquatic ecosystem (ENVO:01001787)

characteristic: broad-scale environmental context

characteristic: collection date

unit: mS/cm

characteristic: conductivity

unit: m

characteristic: depth

text: bacterial community

text: lake water (ENVO:04000007)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: lux

characteristic: light intensity

text: freshwater lake (ENVO:00000021)

characteristic: local environmental context

text: lake water metagenome

characteristic: pH

text: 341F (CCTACGGGNGGCWGCAG) and 805R (GACTACNVGGGTATCTAATCC)

characteristic: pcr primers

text: The influence of diel cycles on the active bacterioplankton communities of two boreal lakes

characteristic: project name

text: lake water metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

unit: ºC

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Uppsala University / Department of Ecology and Genetics

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic ecosystem (ENVO:01001787)

characteristic: broad-scale environmental context

text: bacterial community

characteristic: description

text: lake water (ENVO:04000007)

text: Sweden

text: freshwater lake (ENVO:00000021)

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: title


text: public

text: aquatic ecosystem (ENVO:01001787)

characteristic: collection date

characteristic: depth

text: bacterial community

text: lake water (ENVO:04000007)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: light intensity

text: humic lake (ENVO:01001021)

characteristic: local environmental context

text: lake water metagenome

characteristic: pH

characteristic: pcr primers

characteristic: project name

text: lake water metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic ecosystem (ENVO:01001787)

characteristic: broad-scale environmental context

text: bacterial community

text: lake water (ENVO:04000007)

text: Sweden

text: freshwater lake (ENVO:00000021)

text: lake water metagenome

text: lake water metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target subfragment

characteristic: temperature


text: public

text: aquatic ecosystem (ENVO:01001787)

characteristic: collection date

characteristic: conductivity

characteristic: depth

text: bacterial community

characteristic: description

text: lake water (ENVO:04000007)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: light intensity

text: humic lake (ENVO:01001021)

characteristic: local environmental context

text: bog metagenome

characteristic: organism

characteristic: pH

characteristic: pcr primers

text: bog metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic ecosystem (ENVO:01001787)

characteristic: broad-scale environmental context

text: bacterial community

text: lake water (ENVO:04000007)

text: Sweden

text: humic lake (ENVO:01001021)

text: bog metagenome

characteristic: project name

text: bog metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene


text: public

text: aquatic ecosystem (ENVO:01001787)

characteristic: collection date

characteristic: conductivity

characteristic: depth

text: bacterial community

characteristic: description

text: lake water (ENVO:04000007)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: light intensity

text: freshwater lake (ENVO:00000021)

characteristic: local environmental context

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic ecosystem (ENVO:01001787)

characteristic: broad-scale environmental context

text: bacterial community

text: lake water (ENVO:04000007)

text: Sweden

text: humic lake (ENVO:01001021)

text: bog metagenome

characteristic: pcr primers

text: bog metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: title


text: public

text: aquatic ecosystem (ENVO:01001787)

characteristic: collection date

characteristic: conductivity

characteristic: depth

text: bacterial community

characteristic: description

text: lake water (ENVO:04000007)

characteristic: environmental medium

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: light intensity

text: humic lake (ENVO:01001021)

characteristic: local environmental context

text: bog metagenome

characteristic: project name

text: bog metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic ecosystem (ENVO:01001787)

text: bacterial community

text: lake water (ENVO:04000007)

text: Sweden

text: humic lake (ENVO:01001021)

text: lake water metagenome

characteristic: organism

characteristic: pH

text: lake water metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target subfragment

characteristic: temperature


text: Institute of Biomedicine (IBiMED)

text: public

tag: Namespace:Institute of Biomedicine (IBiMED)

text: human

characteristic: common name

text: Total RNA isolated from liquid nitrogen frozen tissue using Norgen Biotek kit - (Control)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Left ventricle tissue sample

characteristic: title


characteristic: ENA-CHECKLIST

text: Institute of Biomedicine (IBiMED)

text: public

text: human

text: Total RNA isolated from liquid nitrogen frozen tissue using Norgen Biotek kit - (HFpEF)

text: Homo sapiens

text: Homo sapiens

text: Left ventricle tissue sample


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: broker name

text: Protocols: Bacterial cultures (12 ml BB-FBS) of Helicobacter pylori N6 wild-type and ΔHP1021 strains were grown under microaerobic conditions to OD600 of 0.8-1.0. Immediately after opening the jar, 1 ml of the non-stressed culture was added to 1 ml of the RNAprotect Bacteria Reagent (Qiagen), vortexed and incubated for 5 min at room temperature. In parallel, the cultures were moved to aerobic conditions for 25 min (air atmosphere, 37 °C, 140 rpm orbital shaking). After oxidative stress, samples were collected similarly to non-stressed cells. After 5 min incubation with RNAprotect Bacteria Reagent, bacteria were collected by centrifugation (7000 × g, 5 min, RT). RNA was isolated by GeneJET RNA Purification Kit (Thermo Fisher Scientific; K0731) according to the manufacturer’s protocol and treated with RNase-free DNase I (Thermo Fisher Scientific). Next, the subsequent purification by the GeneJET RNA Purification Kit was performed to remove DNase I. A NanoDrop Lite spectrophotometer, agarose gel electrophoresis and Agilent 4200 TapeStation System were used to determine the RNA quality and quantity. RNA was isolated immediately after bacteria collection, stored at -80 °C for up to one month and used for RNA sequencing. RNA was isolated from three independent cultures. RNA was isolated by GeneJET RNA Purification Kit (Thermo Fisher Scientific; K0731) according to the manufacturer’s protocol and treated with RNase-free DNase I (Thermo Fisher Scientific). Next, the subsequent purification by the GeneJET RNA Purification Kit was performed to remove DNase I. A NanoDrop Lite spectrophotometer, agarose gel electrophoresis and Agilent 4200 TapeStation System were used to determine the RNA quality and quantity. RNA was isolated immediately after bacteria collection, stored at -80 °C for up to one month and used for RNA sequencing. RNA was isolated from three independent cultures (three biological replication). The prokaryotic directional mRNA library preparation was performed at the Novogene Bioinformatics Technology Co. Ltd. (Cambridge, UK). The ribosomal RNA was removed from the total RNA, followed by ethanol precipitation. After fragmentation, the first strand of cDNA was synthesised using random hexamer primers. During the second strand cDNA synthesis, dUTPs were replaced with dTTPs in the reaction buffer. The directional library was ready after end repair, A-tailing, adapter ligation, size selection, USER enzyme digestion, amplification, and purification. The library was checked with Qubit, RT-qPCR for quantification and a bioanalyser for size distribution detection.

text: no stress (5% O2)

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: Helicobacter pylori

text: Helicobacter pylori

text: whole organism

characteristic: organism part

characteristic: replicate

text: Helicobacter pylori

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: oxidative stress (21% O2)

text: wild type genotype

text: Helicobacter pylori

text: Helicobacter pylori

text: whole organism

text: Helicobacter pylori


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: no stress (5% O2)

text: Helicobacter pylori

characteristic: organism

text: Helicobacter pylori

text: whole organism

text: Helicobacter pylori


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: oxidative stress (21% O2)

text: Helicobacter pylori

text: Helicobacter pylori

text: whole organism

text: Helicobacter pylori

characteristic: title


text: MSc.

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Cell lines were trypsinized and pelleted after they become confluent. Genomic DNA isolation was performed using GeneJET Genomic DNA isolation kit (ThermoFisher, U.S.A.) according to manufacturer’s recommendations. Library preparation protocol is based on two rounds of PCR to amplify the integrated barcodes from the genomic DNA and carried out according to manufacturer’s guidelines provided by the Cellecta.

text: adult

characteristic: developmental stage

text: colon adenocarcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MSc.

text: public

text: E-MTAB-13018:HT29-RepA-Medium(1st Time Point)

text: ArrayExpress

text: human

text: adult

text: colon adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens

text: HT29-RepA-Medium(1st Time Point)


text: MSc.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13018:HT29-RepA-Medium(2nd Time Point)

text: ArrayExpress

text: human

text: adult

text: colon adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HT29-RepA-Medium(2nd Time Point)


text: MSc.

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13018:HT29-RepA-Medium(3rd Time Point)

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: colon adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HT29-RepA-Medium(3rd Time Point)


characteristic: ENA-CHECKLIST

text: MSc.

text: public

text: E-MTAB-13018:HT29-RepA-Medium(4th Time Point)

text: ArrayExpress

text: human

characteristic: description

text: adult

text: colon adenocarcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: HT29-RepA-Medium(4th Time Point)


characteristic: ENA-FIRST-PUBLIC

text: MSc.

text: public

text: E-MTAB-13018:HT29-RepA-Medium(5th Time Point)

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: colon adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HT29-RepA-Medium(5th Time Point)

characteristic: title


Control 2

text: Birmingham City University

text: public

text: Control 2

tag: Namespace:Birmingham City University

text: RNA extract

text: Burkholderia cenocepacia H111

text: Burkholderia cenocepacia H111

text: Control Sample 2


Control 3

text: Birmingham City University

text: public

text: Control 3

text: RNA extract

text: Burkholderia cenocepacia H111

text: Burkholderia cenocepacia H111

text: Control Sample 3


No Zinc 1

text: Birmingham City University

text: public

text: No Zinc 1

text: RNA extract

text: Burkholderia cenocepacia H111

text: Burkholderia cenocepacia H111

text: No Zinc Sample 1


No Zinc 2

text: Birmingham City University

text: public

text: No Zinc 2

text: RNA extract

text: Burkholderia cenocepacia H111

text: Burkholderia cenocepacia H111

text: No Zinc Sample 2


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: collection date

text: LAC* 0846 pCL55 parent

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: Not provided

characteristic: isolate

text: not provided

text: not provided

text: Staphylococcus aureus subsp. aureus USA300_FPR3757

text: Not provided

characteristic: serovar

text: LAC*

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: LAC* 0846 pCL55 CDM supressor 2

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: LAC* 0846 pCL55 CDM supressor 3

characteristic: description

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: collection date

text: LAC* 0846 pCL55 CDM supressor 4

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

characteristic: organism

text: Not provided

text: LAC*

characteristic: title


text: IMPERIAL COLLEGE LONDON

text: public

text: LAC* 0846 pCL55 CDM supressor 5

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: Not provided

characteristic: isolate

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: LAC* 0846 pCL55 CDM supressor 6

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

characteristic: serovar

text: LAC*

characteristic: strain


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: LAC* 0846 pCL55 CDM supressor 7

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: LAC* 0846 pCL55 CDM supressor 8

characteristic: description

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: collection date

text: LAC* 0846 pCL55 CDM supressor 9

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

characteristic: organism

text: Not provided

text: LAC*

characteristic: title


text: IMPERIAL COLLEGE LONDON

text: public

text: LAC* 0846 pCL55 CDM supressor 10

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: Not provided

characteristic: isolate

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: LAC* 0846 pCL55 CDM supressor 11

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

characteristic: serovar

text: LAC*

characteristic: strain


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: LAC* 0846 pCL55 CDM supressor 12

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: LAC* 0846 pCL55 CDM supressor 1

characteristic: description

text: United Kingdom

text: not provided

text: Homo Sapiens

text: Not provided

text: not provided

text: not provided

text: Not provided

text: LAC*


characteristic: ENA-FIRST-PUBLIC

text: LUMC

text: public

characteristic: collection date

text: Isolated total DNA from a pure bacterial culture

text: Netherlands

text: Homo sapiens

text: human faeces

text: Clostridioides difficile

characteristic: organism

text: Clostridioides difficile

characteristic: title


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Caenorhabditis elegans

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


E-MTAB-12859:Sample 1 (729_G5_a)

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

text: E-MTAB-12859:Sample 1 (729_G5_a)

tag: Namespace:ONTARIO INSTITUTE FOR CANCER RESEARCH

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: GBM cells for functional experiments were obtained following informed consent from patients. Experiments were in accordance with the Research Ethics Board at The Hospital for Sick Children (Toronto, Canada). Access to pathological data was obtained from the institutional review boards. GBM stem cell lines (G797, G729, G411), which were established from mesenchymal GBMs, were cultured using previously established protocols (85) including serum-free NS cell self-renewal media (NS media) consisting of Neurocult NS-A Basal media, supplemented with 2 mmol/L L-glutamine, hormone mix (in house equivalent to N2), B27 supplements, 75 mg/mL BSA, 2 mg/mL Heparin, 10 ng/mL basic FGF and 10 ng/mL human EGF. GBM cell lines were grown adherently on culture plates coated with poly-L-ornithine and laminin and maintained in 37°C tissue culture incubator with 5% CO2. All cell lines were regularly checked for mycoplasma infections by DAPI staining. RNA-seq data was generated in the patient-derived GBM cell line G729 with shRNA targeting GJB2, SCN9A, or non-targeting (NT) shRNA controls, as described above. Total RNA was collected 4 days post lentiviral shRNA transduction using RNeasy Plus Mini Kit (Qiagen #74134). Lentiviral transduction and RNA extraction were performed in triplicates. RNA integrity number (RIN) was determined using Agilent Bioanalyzer. All samples had RIN > 9.8. Library preparation was performed using NEBNext Ultra II Directional polyA mRNA Library Prep Kit.

text: brain glioblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 1 (729_G5_a)


E-MTAB-12859:Sample 2 (729_G5_b)

characteristic: ENA-CHECKLIST

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12859:Sample 2 (729_G5_b)

text: ArrayExpress

text: human

text: brain glioblastoma

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 2 (729_G5_b)


E-MTAB-12859:Sample 3 (729_G5_c)

characteristic: ENA-FIRST-PUBLIC

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

characteristic: SRA accession

text: E-MTAB-12859:Sample 3 (729_G5_c)

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: brain glioblastoma

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 3 (729_G5_c)


E-MTAB-12859:Sample 4 (729_S3_a)

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

text: E-MTAB-12859:Sample 4 (729_S3_a)

text: ArrayExpress

text: human

characteristic: common name

text: brain glioblastoma

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 4 (729_S3_a)

characteristic: title


E-MTAB-12859:Sample 5 (729_S3_b)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

text: E-MTAB-12859:Sample 5 (729_S3_b)

text: ArrayExpress

characteristic: broker name

text: human

text: brain glioblastoma

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 5 (729_S3_b)


E-MTAB-12859:Sample 6 (729_S3_c)

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

text: E-MTAB-12859:Sample 6 (729_S3_c)

text: ArrayExpress

text: human

text: brain glioblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 6 (729_S3_c)


E-MTAB-12859:Sample 7 (729_Scr_a)

characteristic: ENA-CHECKLIST

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

characteristic: INSDC center name

text: public

text: E-MTAB-12859:Sample 7 (729_Scr_a)

text: ArrayExpress

text: human

text: brain glioblastoma

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 7 (729_Scr_a)


E-MTAB-12859:Sample 8 (729_Scr_b)

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12859:Sample 8 (729_Scr_b)

text: ArrayExpress

text: human

text: brain glioblastoma

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 8 (729_Scr_b)


E-MTAB-12859:Sample 9 (729_Scr_c)

characteristic: ENA-FIRST-PUBLIC

text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

characteristic: SRA accession

text: E-MTAB-12859:Sample 9 (729_Scr_c)

characteristic: Submitter Id

text: ArrayExpress

text: human

text: brain glioblastoma

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 9 (729_Scr_c)


text: IDAEA-CSIC

text: public

text: lab water

characteristic: broad-scale environmental context

characteristic: collection date

text: Daphnia-associated microbiome lab_water_control_replicate_1

characteristic: description

text: lab water

characteristic: environmental medium

text: control

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: IDAEA-CSIC, Barcelona

characteristic: local environmental context

text: crustacean metagenome

characteristic: organism

text: Impact of the antibiotic doxycycline on the D. magna reproduction, associated microbiome and antibiotic resistance genes in treated wastewater conditions

characteristic: project name

text: crustacean metagenome

text: Daphnia-associated microbiome lab_water_control_1


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: lab water

text: Daphnia-associated microbiome lab_water_control_replicate_2

text: lab water

text: control

text: Spain

text: IDAEA-CSIC, Barcelona

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome lab_water_control_2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: IDAEA-CSIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lab water

characteristic: broad-scale environmental context

text: Daphnia-associated microbiome lab_water_control_replicate_3

text: lab water

text: control

text: Spain

text: IDAEA-CSIC, Barcelona

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome lab_water_control_3


text: IDAEA-CSIC

text: public

text: lab water

characteristic: collection date

text: Daphnia-associated microbiome lab_water_antibiotic_replicate_1

characteristic: description

text: lab water

characteristic: environmental medium

text: addition of 1 mg/L of the antibiotic doxycycline

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: IDAEA-CSIC, Barcelona

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome lab_water_antibiotic_1


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IDAEA-CSIC

text: public

text: lab water

text: Daphnia-associated microbiome lab_water_antibiotic_replicate_2

text: lab water

text: Spain

characteristic: geographic location (longitude)

text: IDAEA-CSIC, Barcelona

characteristic: local environmental context

text: crustacean metagenome

characteristic: organism

characteristic: project name

text: crustacean metagenome

text: Daphnia-associated microbiome lab_water_antibiotic_2


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: lab water

text: Daphnia-associated microbiome lab_water_antibiotic_replicate_3

text: lab water

text: Spain

text: IDAEA-CSIC, Barcelona

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome lab_water_antibiotic_3

characteristic: title


text: IDAEA-CSIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: WWTP

characteristic: broad-scale environmental context

characteristic: collection date

text: Daphnia-associated microbiome waste_water_control_replicate_1

characteristic: description

text: WWTP water

text: control

text: Spain

text: Palam√≥s WWTP (NE, Spain)

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome waste_water_control_1


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IDAEA-CSIC

text: public

text: WWTP

text: Daphnia-associated microbiome waste_water_control_replicate_2

text: WWTP water

characteristic: environmental medium

text: control

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Palam√≥s WWTP (NE, Spain)

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome waste_water_control_2


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IDAEA-CSIC

text: public

text: WWTP

text: Daphnia-associated microbiome waste_water_control_replicate_3

text: WWTP water

text: control

text: Spain

characteristic: geographic location (longitude)

text: Palam√≥s WWTP (NE, Spain)

characteristic: local environmental context

text: crustacean metagenome

characteristic: organism

text: Impact of the antibiotic doxycycline on the D. magna reproduction, associated microbiome and antibiotic resistance genes in treated wastewater conditions

characteristic: project name

text: crustacean metagenome

text: Daphnia-associated microbiome waste_water_control_3


text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: WWTP

text: Daphnia-associated microbiome waste_water_antibiotic_replicate_1

text: WWTP water

text: Spain

text: Palam√≥s WWTP (NE, Spain)

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome waste_water_antibiotic_1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IDAEA-CSIC

text: public

characteristic: Submitter Id

text: WWTP

characteristic: broad-scale environmental context

characteristic: collection date

text: Daphnia-associated microbiome waste_water_antibiotic_replicate_2

characteristic: description

text: WWTP water

text: Spain

text: Palam√≥s WWTP (NE, Spain)

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome waste_water_antibiotic_2


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IDAEA-CSIC

text: public

text: WWTP

text: Daphnia-associated microbiome waste_water_antibiotic_replicate_3

text: WWTP water

characteristic: environmental medium

text: addition of 1 mg/L of the antibiotic doxycycline

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Palam√≥s WWTP (NE, Spain)

text: crustacean metagenome

text: crustacean metagenome

text: Daphnia-associated microbiome waste_water_antibiotic_3


text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: WWTP

text: aquatic microbiome lab_water_antibiotic_replicate_1

text: WWTP water

text: Spain

characteristic: geographic location (longitude)

text: Palam√≥s WWTP (NE, Spain)

characteristic: local environmental context

text: aquatic metagenome

characteristic: organism

characteristic: project name

text: aquatic metagenome

text: aquatic microbiome lab_water_antibiotic_1


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IDAEA-CSIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: lab water

text: aquatic microbiome lab_water_control_replicate_1

text: lab water

text: control

text: Spain

text: IDAEA-CSIC, Barcelona

text: aquatic metagenome

text: aquatic metagenome

text: aquatic microbiome lab_water_control_1

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IDAEA-CSIC

text: public

characteristic: Submitter Id

text: lab water

characteristic: broad-scale environmental context

characteristic: collection date

text: aquatic microbiome lab_water_control_initial water

characteristic: description

text: lab water

text: control

text: Spain

text: IDAEA-CSIC, Barcelona

text: aquatic metagenome

text: aquatic metagenome


text: IDAEA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: WWTP

text: aquatic microbiome waste_water_antibiotic_replicate_1

text: WWTP water

characteristic: environmental medium

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Palam√≥s WWTP (NE, Spain)

text: aquatic metagenome

text: aquatic metagenome

text: aquatic microbiome waste_water_antibiotic_1


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IDAEA-CSIC

text: public

text: WWTP

text: aquatic microbiome waste_water_control_replicate1

text: WWTP water

text: control

text: Spain

characteristic: geographic location (longitude)

text: Palam√≥s WWTP (NE, Spain)

characteristic: local environmental context

text: aquatic metagenome

characteristic: organism

characteristic: project name

text: aquatic metagenome

text: aquatic microbiome waste_water_control1


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IDAEA-CSIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: WWTP

text: aquatic microbiome waste_water_control_initial water

text: WWTP water

text: control

text: Spain

text: Palam√≥s WWTP (NE, Spain)

text: aquatic metagenome

text: aquatic metagenome

characteristic: title


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: African malaria mosquito

characteristic: common name

text: not provided

text: Anopheles gambiae

text: Anopheles gambiae


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Geomar Helmholtz Centre

characteristic: GAL

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: aquatic biome

characteristic: broad-scale environmental context

text: JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER

characteristic: collected by

text: University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology

characteristic: collecting institution

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

text: coral fringing reef, slope, cryptic habitat, on coral reef rock (calcium carbonate)

characteristic: habitat

text: adult

characteristic: host life stage

text: Halisarca caerulea

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: marine coral reef biome

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: benificial

characteristic: relationship

characteristic: sample derived from

characteristic: sample same as

text: sponge metagenome

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: N

characteristic: symbiont

text: 9888992d-f8be-4791-9352-604ccba79339-asg-metagenome

characteristic: tolid


text: Yes

tag: attribute

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm (version 0.16.1-r375); Hifiasm-Meta (version 0.3-r061)

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Halisarca caerulea

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Halisarca caerulea

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: benificial

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: N

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.1.1); GTDB (release 207_v2)

text: taxonomic novelty determined using RED

text: 13b2e092-462b-4f69-be90-4ec282aad33a-asg-MAGScoT_cleanbin_000002


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Halisarca caerulea

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Halisarca caerulea

text: marine coral reef biome

text: sponge metagenome

text: uncultured Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: benificial

characteristic: relationship

characteristic: sample derived from

characteristic: sample same as

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: N

characteristic: symbiont

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: ef543763-27a0-46e1-9071-0382eed68728-asg-MAGScoT_cleanbin_000003


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Curacao

characteristic: geographic location (longitude)

text: Piscadera Bay | Station Buoy #1

text: adult

text: Halisarca caerulea

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Halisarca caerulea

text: marine coral reef biome

characteristic: local environmental context

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

characteristic: organism

text: WHOLE ORGANISM

text: ASG

characteristic: project name

text: benificial

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: N

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: 5f5751af-f0ac-4e1f-ac48-709ad72f333e-asg-MAGScoT_cleanbin_000005


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collected by

text: adult sponge tissue

text: Curacao

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Piscadera Bay | Station Buoy #1

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Halisarca caerulea

characteristic: host scientific name

characteristic: host taxid

characteristic: identified by

text: metagenome-assembled genome

text: Sponge: Halisarca caerulea

text: marine coral reef biome

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: benificial

characteristic: relationship

characteristic: sample derived from

characteristic: sample same as

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: N

characteristic: symbiont

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 278287e1-6799-4dd6-b4a0-a369812aa13d-asg-MAGScoT_cleanbin_000001


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Zagreb, Faculty of Science

characteristic: Submitter Id

characteristic: collection date

text: Loggerhead turtle

characteristic: common name

text: loggerhead sea turtle cloacal swab sample (Adriatic Sea)

characteristic: description

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: not determined

characteristic: sex

text: loggerhead sea turtle ID047 cloacal sample 16S0064C 16S rRNA sequences

characteristic: title


text: University of Zagreb, Faculty of Science

text: public

text: Loggerhead turtle

text: loggerhead sea turtle oral swab sample (Adriatic Sea)

text: Croatia

characteristic: geographic location (country and/or sea)

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID047 oral sample 16S0064O 16S rRNA sequences


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Loggerhead turtle

text: loggerhead sea turtle tank water sample (Adriatic Sea)

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID047 tank water sample 16S0064W 16S rRNA sequences


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID056 cloacal sample 16S0073C 16S rRNA sequences


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID056 oral sample 16S0073O 16S rRNA sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID056 oral sample 16S0073W 16S rRNA sequences


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: loggerhead sea turtle cloacal swab sample (Tyrrhenian Sea)

text: Italy

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle ID057 cloacal sample 16S0074C 16S rRNA sequences


text: public

characteristic: collection date

text: Loggerhead turtle

characteristic: common name

text: loggerhead sea turtle oral swab sample (Tyrrhenian Sea)

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle ID057 oral sample 16S0074O 16S rRNA sequences


text: public

text: Loggerhead turtle

characteristic: description

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: female

text: loggerhead sea turtle ID010 cloacal sample 16S0084C 16S rRNA sequences


text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: female

characteristic: sex

text: loggerhead sea turtle ID010 tank water sample 16S0084W 16S rRNA sequences

characteristic: title


text: public

text: Loggerhead turtle

text: Italy

characteristic: geographic location (country and/or sea)

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID068 cloacal sample 16S0087C 16S rRNA sequences


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Loggerhead turtle

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID068 oral sample 16S0087O 16S rRNA sequences


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Loggerhead turtle

text: loggerhead sea turtle cloacal swab sample (Adriatic Sea)

text: Italy

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID069 cloacal sample 16S0088C 16S rRNA sequences


text: University of Zagreb, Faculty of Science

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: loggerhead sea turtle oral swab sample (Adriatic Sea)

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID069 oral sample 16S0088O 16S rRNA sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: Italy

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID070 cloacal sample 16S0089C 16S rRNA sequences


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID070 oral sample 16S0089O 16S rRNA sequences


text: public

characteristic: collection date

text: Loggerhead turtle

characteristic: common name

text: Italy

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID071 cloacal sample 16S0090C 16S rRNA sequences


text: public

text: Loggerhead turtle

characteristic: description

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID071 oral sample 16S0090O 16S rRNA sequences


text: public

text: Loggerhead turtle

text: loggerhead sea turtle cloacal swab sample (Tyrrhenian Sea)

text: Italy

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: male

characteristic: sex

text: loggerhead sea turtle ID057 cloacal sample 16S0092C 16S rRNA sequences

characteristic: title


text: public

text: Loggerhead turtle

text: loggerhead sea turtle oral swab sample (Tyrrhenian Sea)

text: Italy

characteristic: geographic location (country and/or sea)

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle ID057 oral sample 16S0092O 16S rRNA sequences


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID073 cloacal sample 16S0093C 16S rRNA sequences


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID073 oral sample 16S0093O 16S rRNA sequences


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: loggerhead sea turtle tank water sample (Adriatic Sea)

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID073 tank water sample 16S0093W 16S rRNA sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: loggerhead sea turtle cloacal swab sample (Adriatic Sea)

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID074 cloacal sample 16S0094C 16S rRNA sequences


text: University of Zagreb, Faculty of Science

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID074 oral sample 16S0094O 16S rRNA sequences


text: public

characteristic: collection date

text: Loggerhead turtle

characteristic: common name

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID093 cloacal sample 16S0113C 16S rRNA sequences


text: public

text: Loggerhead turtle

text: loggerhead sea turtle oral swab sample (Adriatic Sea)

characteristic: description

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID093 oral sample 16S0113O 16S rRNA sequences


text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: female

characteristic: sex

text: loggerhead sea turtle ID096 cloacal sample 16S0117C 16S rRNA sequences

characteristic: title


text: public

text: Loggerhead turtle

text: Croatia

characteristic: geographic location (country and/or sea)

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID096 oral sample 16S0117O 16S rRNA sequences


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID096 tank water sample 16S0117W 16S rRNA sequences


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID096 cloacal sample 16S0118C 16S rRNA sequences


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID096 oral sample 16S0118O 16S rRNA sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle ID096 tank water sample 16S0118W 16S rRNA sequences


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID093 cloacal sample 16S0119C 16S rRNA sequences


text: public

characteristic: collection date

text: Loggerhead turtle

characteristic: common name

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID093 oral sample 16S0119O 16S rRNA sequences


text: public

text: Loggerhead turtle

text: loggerhead sea turtle tank water sample (Adriatic Sea)

characteristic: description

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID093 tank water sample 16S0119W 16S rRNA sequences


text: public

text: Loggerhead turtle

text: loggerhead sea turtle cloacal swab sample (Adriatic Sea)

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

characteristic: sex

text: loggerhead sea turtle ID097 cloacal sample 16S0120C 16S rRNA sequences

characteristic: title


text: University of Zagreb, Faculty of Science

text: public

text: Loggerhead turtle

text: Croatia

characteristic: geographic location (country and/or sea)

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID097 oral sample 16S0120O 16S rRNA sequences


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID097 tank water sample 16S0120W 16S rRNA sequences


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID098 cloacal sample 16S0123C 16S rRNA sequences


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: loggerhead sea turtle oral swab sample (Adriatic Sea)

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID098 oral sample 16S0123O 16S rRNA sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID098 tank water sample 16S0123W 16S rRNA sequences


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle ID117 cloacal sample 16S0141C 16S rRNA sequences


text: public

characteristic: collection date

text: Loggerhead turtle

characteristic: common name

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle ID117 oral sample 16S0141O 16S rRNA sequences


text: public

text: Loggerhead turtle

characteristic: description

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID118 cloacal sample 16S0142C 16S rRNA sequences


text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

characteristic: sex

text: loggerhead sea turtle ID118 oral sample 16S0142O 16S rRNA sequences

characteristic: title


text: public

text: Loggerhead turtle

text: Croatia

characteristic: geographic location (country and/or sea)

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID119 cloacal sample 16S0143C 16S rRNA sequences


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle ID119 oral sample 16S0143O 16S rRNA sequences


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle ID122 cloacal sample 16S0146C 16S rRNA sequences


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle ID122 oral sample 16S0146O 16S rRNA sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: sterile water as negative control during DNA extraction

text: Croatia

text: Caretta caretta

text: negative control sterile water

text: Caretta caretta

text: Caretta caretta

text: not applicable

text: negative control sample water 16SNEGCTRL 16S rRNA sequences


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: malaria parasite P. falciparum

text: not provided

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium vivax

text: SC

text: public

text: not provided

characteristic: collection date

text: malaria parasite P. vivax

characteristic: common name

text: not provided

text: Plasmodium vivax

text: Plasmodium vivax


text: University of Zagreb, Faculty of Science

text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID047 - cloacal swabs

characteristic: description

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: not determined

characteristic: sex

text: loggerhead sea turtle cloacal sample ITS0064C ITS2 sequences


text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID047 - tank water samples

text: Croatia

characteristic: geographic location (country and/or sea)

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle tank water sample ITS0064W ITS2 sequences

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID056 - cloacal swabs

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle cloacal sample ITS0073C ITS2 sequences


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID056 - tank water samples

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle tank water sample ITS0073W ITS2 sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: sequences obtained from turtle ID057 - cloacal swabs

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle cloacal sample ITS0074C ITS2 sequences


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: sequences obtained from turtle ID010 - cloacal swabs

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle cloacal sample ITS0084C ITS2 sequences


text: public

characteristic: collection date

text: Loggerhead turtle

characteristic: common name

text: sequences obtained from turtle ID010 - tank water samples

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: female

text: loggerhead sea turtle tank water sample ITS0084W ITS2 sequences


text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID068- cloacal swabs

characteristic: description

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: not determined

text: loggerhead sea turtle cloacal sample ITS0087C ITS2 sequences


text: University of Zagreb, Faculty of Science

text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID069 - cloacal swabs

text: Italy

characteristic: geographic location (country and/or sea)

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

characteristic: sex

text: loggerhead sea turtle cloacal sample ITS0088C ITS2 sequences


text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID070 - cloacal swabs

text: Italy

text: Caretta caretta

characteristic: host scientific name

text: loggerhead sea turtle tank water

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle cloacal sample ITS0089C ITS2 sequences

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID071 - cloacal swabs

text: Italy

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle cloacal sample ITS0090C ITS2 sequences


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Loggerhead turtle

text: Italy

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: male

text: loggerhead sea turtle cloacal sample ITS0092C ITS2 sequences


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Loggerhead turtle

text: sequences obtained from turtle ID073 - cloacal swabs

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle cloacal sample ITS0093C ITS2 sequences


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Loggerhead turtle

text: sequences obtained from turtle ID073 - tank water samples

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle oral cavity

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle tank water sample ITS0093W ITS2 sequences


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: sequences obtained from turtle ID074 - cloacal swabs

text: Croatia

text: Caretta caretta

text: loggerhead sea turtle cloaca

text: Caretta caretta

text: Caretta caretta

text: not determined

text: loggerhead sea turtle cloacal sample ITS0094C ITS2 sequences