text: GHENT UNIVERSITY

text: public

text: Digestive tract environment

text: Sample number 85; Donor 2; Short SHIME transit; Distal colon; Day 1

text: SHIME environment

text: Belgium

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

characteristic: investigation type

text: City

characteristic: local environmental context

text: human gut metagenome

characteristic: organism

text: EOS-MiQuant

characteristic: project name

text: human gut metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 85; Donor 2; ST; D; Day 1

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:GHENT UNIVERSITY

characteristic: Submitter Id

text: Digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample number 86; Donor 2; Medium SHIME transit; Proximal colon; Day 1

characteristic: description

text: SHIME environment

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

text: human-gut

text: City

text: human gut metagenome

text: EOS-MiQuant

text: human gut metagenome

text: Illumina Miseq

text: 86; Donor 2; MT; P; Day 1


text: GHENT UNIVERSITY

text: public

text: Digestive tract environment

text: Sample number 87; Donor 2; Medium SHIME transit; Distal colon; Day 1

text: SHIME environment

text: Belgium

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

characteristic: investigation type

text: City

characteristic: local environmental context

text: human gut metagenome

characteristic: organism

text: EOS-MiQuant

characteristic: project name

text: human gut metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 87; Donor 2; MT; D; Day 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Digestive tract environment

text: Sample number 88; Donor 2; Long SHIME transit; Proximal colon; Day 1

text: SHIME environment

text: Belgium

text: human-gut

text: City

text: human gut metagenome

text: EOS-MiQuant

text: human gut metagenome

text: Illumina Miseq

text: 88; Donor 2; LT; P; Day 1


text: GHENT UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Digestive tract environment

characteristic: broad-scale environmental context

characteristic: collection date

text: Sample number 89; Donor 2; Long SHIME transit; Distal colon; Day 1

characteristic: description

text: SHIME environment

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: City

text: human gut metagenome

text: EOS-MiQuant

text: human gut metagenome

text: Illumina Miseq

text: 89; Donor 2; LT; D; Day 1


text: GHENT UNIVERSITY

text: public

text: Digestive tract environment

text: Sample number 96; Donor 2; Short SHIME transit; Proximal colon; Day 3

text: SHIME environment

text: Belgium

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

characteristic: investigation type

text: City

characteristic: local environmental context

text: human gut metagenome

characteristic: organism

text: EOS-MiQuant

characteristic: project name

text: human gut metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 96; Donor 2; ST; P; Day 3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: maize

characteristic: common name

text: leaf maize sample

text: USA

text: Zea mays subsp. mays

text: Zea mays subsp. mays


MBPM

text: UNL

text: public

characteristic: SRA accession

text: MBPM

characteristic: Submitter Id

characteristic: collection date

text: maize

text: leaf maize sample

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Zea mays subsp. mays

text: Zea mays subsp. mays

text: MBPM


MoG

text: UNL

text: public

text: MoG

text: maize

text: leaf maize sample

text: USA

text: Zea mays subsp. mays

characteristic: organism

text: Zea mays subsp. mays

text: MoG


PHWRZ

text: UNL

text: public

text: PHWRZ

text: maize

text: leaf maize sample

text: USA

text: Zea mays subsp. mays

text: Zea mays subsp. mays

text: PHWRZ


Tr

text: UNL

text: public

text: Tr

text: maize

text: leaf maize sample

text: USA

text: Zea mays subsp. mays

text: Zea mays subsp. mays

text: Tr


WU-TAN-TZAO

text: UNL

text: public

text: WU-TAN-TZAO

text: maize

text: leaf maize sample

text: USA

text: Zea mays subsp. mays

text: Zea mays subsp. mays

text: WU-TAN-TZAO


YE-CHI-HUNG

text: UNL

text: public

text: YE-CHI-HUNG

text: maize

text: leaf maize sample

text: USA

text: Zea mays subsp. mays

text: Zea mays subsp. mays

text: YE-CHI-HUNG


text: public

tag: Namespace:RIVM - National Institute for Public Health and the Environment

text: not provided

text: Netherlands

text: Vibrio cholerae

text: Vibrio cholerae


text: RIVM - National Institute for Public Health and the Environment

text: public

text: not provided

text: Netherlands

text: Vibrio cholerae

text: Vibrio cholerae


BemisiaToCV_d14_sRNA rep1

text: IHSM La Mayora, CSIC-UMA

text: public

text: BemisiaToCV_d14_sRNA rep1

tag: Namespace:IHSM La Mayora, CSIC-UMA

text: 6 weeks old

characteristic: age

text: tomato

text: ToCV-viruliferous whiteflies_14 days post ToCV Infection

text: Moneymaker

characteristic: genotype

text: Spain

text: Solanum lycopersicum

text: Solanum lycopersicum


BemisiaToCV_d14_sRNA rep2

characteristic: ENA-CHECKLIST

text: IHSM La Mayora, CSIC-UMA

text: public

text: BemisiaToCV_d14_sRNA rep2

text: 6 weeks old

text: tomato

text: Moneymaker

text: Spain

text: Solanum lycopersicum

text: Solanum lycopersicum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Key Laboratory of Environmental and Applied Microbiology, CAS

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: gut metagenome

text: Pika

characteristic: project name

text: gut metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Soil


characteristic: External Id

text: Key Laboratory of Environmental and Applied Microbiology, CAS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil

text: soil

text: soil

text: China

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: Pika

text: gut metagenome

text: soil

text: Soil


characteristic: ArrayExpress-PHENOTYPE

text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Female

characteristic: GENDER

text: SC

text: public

characteristic: PHENOTYPE

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: External Id

text: VIB - UGENT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli

tag: Namespace:VIB - UGENT

text: ORCAE

characteristic: broker name

text: INIA-CIFOR

text: sample 1 of ONT sequencing of Pinus pinaster

characteristic: description

characteristic: estimated size

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: isolation and growth condition

text: Pinus pinaster

text: maritime pine

characteristic: organism common name

text: callus tissue

characteristic: plant developmental stage

text: not provided

characteristic: plant growth medium

text: megagametophyte

characteristic: plant structure

text: haploid

characteristic: ploidy

text: callus

characteristic: propagation

text: Pinus pinaster

text: Pinus pinaster ONT sample 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VIB - UGENT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: ORCAE

text: INIA-CIFOR

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

text: Pinus pinaster

characteristic: organism

text: maritime pine

text: callus tissue

text: not provided

text: megagametophyte

text: haploid

text: callus

text: Pinus pinaster

text: Pinus pinaster ONT sample 2

characteristic: title


characteristic: External Id

text: VIB - UGENT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli

text: ORCAE

characteristic: broker name

text: INIA-CIFOR

characteristic: description

characteristic: estimated size

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Pinus pinaster

text: maritime pine

text: callus tissue

text: not provided

text: megagametophyte

text: haploid

text: callus

text: Pinus pinaster

text: Pinus pinaster ONT sample 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VIB - UGENT

text: public

text: ena-upload-cli

text: ORCAE

text: INIA-CIFOR

text: Spain

text: not provided

characteristic: isolation and growth condition

text: Pinus pinaster

text: maritime pine

characteristic: organism common name

text: callus tissue

characteristic: plant developmental stage

text: not provided

characteristic: plant growth medium

text: megagametophyte

characteristic: plant structure

text: haploid

characteristic: ploidy

text: callus

characteristic: propagation

text: Pinus pinaster

text: Pinus pinaster ONT sample 4


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIB - UGENT

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: ORCAE

text: INIA-CIFOR

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

text: Pinus pinaster

characteristic: organism

text: maritime pine

text: callus tissue

text: not provided

text: megagametophyte

text: haploid

text: callus

text: Pinus pinaster

text: Pinus pinaster ONT sample 5

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VIB - UGENT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli

text: ORCAE

characteristic: broker name

text: INIA-CIFOR

characteristic: description

characteristic: estimated size

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Pinus pinaster

text: maritime pine

text: callus tissue

text: not provided

text: megagametophyte

text: haploid

text: callus

text: Pinus pinaster

text: Pinus pinaster ONT sample 6


SCI Inv TAi 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Pasteur Institute

text: public

text: SCI Inv TAi 1

tag: Namespace:Pasteur Institute

characteristic: collection date

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and all TA cassettes are inactivated by introduction of an in frame STOP codon, clone 1

text: France


SCI Inv TAi 2

text: Pasteur Institute

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SCI Inv TAi 2

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and all TA cassettes are inactivated by introduction of an in frame STOP codon, clone 2

text: France


SCI Inv TAi 3

text: Pasteur Institute

text: public

text: SCI Inv TAi 3

characteristic: Submitter Id

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and all TA cassettes are inactivated by introduction of an in frame STOP codon, clone 3

text: France

characteristic: geographic location (country and/or sea)

characteristic: organism


SCI Reinv TAi 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Pasteur Institute

text: public

text: SCI Reinv TAi 1

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is reinverted back to its original orientation and all TA cassettes are inactivated by introduction of an in frame STOP codon, clone 1

text: France

characteristic: title


text: Yeast Genomics Lab@Nova, UNL, Portugal

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Yeast Genomics Lab@Nova, UNL, Portugal

text: not provided

text: Flower of Byrsonima crassifolia

text: Brazil

text: Starmerella sp.

text: Starmerella sp.

text: Starmerella monicapupoae sp. nov.


text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: not provided

text: Flower of Byrsonima crassifolia

characteristic: description

text: Brazil

text: Starmerella sp.

text: Starmerella sp.

text: Starmerella gilliamiae sp. nov.


UFMG CM-Y-286

text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: UFMG CM-Y-286

text: not provided

text: Flower (Campanulaceae)

text: Brazil

text: Starmerella sp.

text: Starmerella sp.

text: Starmerella opuntiae


text: University of Zurich

text: public

tag: Namespace:University of Zurich

text: bacterial isolate

text: Switzerland

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: isolate

text: bronchial secretion

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Zurich

text: public

text: bacterial isolate

text: Belgium

text: not provided

text: Homo sapiens

text: not provided

text: blood

text: Staphylococcus carnosus

text: Staphylococcus carnosus


text: University of Zurich

characteristic: INSDC center name

text: public

characteristic: collection date

text: bacterial isolate

text: Switzerland

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis


text: University of Zurich

text: public

characteristic: INSDC status

characteristic: SRA accession

text: bacterial isolate

text: Switzerland

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus


text: University of Zurich

text: public

characteristic: Submitter Id

text: bacterial isolate

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: Staphylococcus hyicus

text: Staphylococcus hyicus


characteristic: ENA-CHECKLIST

text: University of Zurich

text: public

text: bacterial isolate

text: Switzerland

text: not provided

text: Homo sapiens

text: not provided

text: Lower leg fracture

text: Staphylococcus intermedius

characteristic: organism

text: Staphylococcus intermedius


characteristic: ENA-FIRST-PUBLIC

text: University of Zurich

text: public

text: bacterial isolate

text: Switzerland

text: not provided

text: Homo sapiens

text: not provided

text: Osteomyelitis

text: Staphylococcus simulans

text: Staphylococcus simulans

characteristic: title


text: University of Zurich

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: bacterial isolate

text: Switzerland

text: not provided

text: Homo sapiens

text: not provided

text: Polytrauma

text: Staphylococcus simulans bv. staphylolyticus


text: Hospital Universitario La Paz

text: public

tag: Namespace:Hospital Universitario La Paz

text: Streptococcus pseudopneumoniae isolated from CSF

characteristic: description

text: Spain

text: Madrid

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

text: CSF from a patient with meningitis

text: Streptococcus pseudopneumoniae

text: Streptococcus pseudopneumoniae


characteristic: ENA first public

text: JUSTUS LIEBIG UNIVERSITY

text: public

text: ena-SAMPLE-TAB-07-11-2023-15:59:30:825-84165

tag: Namespace:JUSTUS LIEBIG UNIVERSITY

text: Institute of Virology, FB10, Schubertstr. 81, 35392 Giessen

characteristic: collecting institution

text: not provided

text: Lyudmila Shalamova

characteristic: collector name

text: RNAseq of RVFV replicate 1

text: Germany

text: not applicable

characteristic: host common name

text: not applicable

text: not applicable

characteristic: host scientific name

text: not applicable

characteristic: host sex

text: not applicable

characteristic: host subject id

text: not provided

characteristic: isolate

text: Rift Valley fever virus

text: Rift Valley fever virus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-07-11-2023-15:59:30:828-84166

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Lyudmila Shalamova

text: RNAseq of RVFV replicate 2

text: Germany

characteristic: geographic location (country and/or sea)

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not provided

text: Rift Valley fever virus

characteristic: organism

text: Rift Valley fever virus


characteristic: ENA first public

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-07-11-2023-15:59:30:828-84167

characteristic: collecting institution

text: not provided

text: Lyudmila Shalamova

text: RNAseq of RVFV replicate 3

characteristic: description

text: Germany

text: not applicable

text: not applicable

characteristic: host health state

text: not applicable

text: not applicable

text: not applicable

text: not provided

text: Rift Valley fever virus

text: Rift Valley fever virus

characteristic: title


text: JUSTUS LIEBIG UNIVERSITY

text: public

text: ena-SAMPLE-TAB-07-11-2023-15:59:30:828-84168

text: not provided

text: Lyudmila Shalamova

characteristic: collector name

text: N iCLIP of RVFV virions

text: Germany

text: not applicable

characteristic: host common name

text: not applicable

text: not applicable

characteristic: host scientific name

text: not applicable

characteristic: host sex

text: not applicable

characteristic: host subject id

text: not provided

characteristic: isolate

text: Rift Valley fever virus

text: Rift Valley fever virus

text: iCLIP RVFV virions


characteristic: ENA-CHECKLIST

characteristic: External Id

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-07-11-2023-15:59:30:828-84169

text: not provided

text: Lyudmila Shalamova

text: N iCLIP of BHK cells infected with RVFV

text: Germany

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not provided

text: Rift Valley fever virus

text: Rift Valley fever virus

characteristic: strain

text: iCLIP RVFV infected BHK cells


characteristic: ENA first public

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-07-11-2023-15:59:30:829-84170

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Lyudmila Shalamova

text: N iCLIP of A549 cells infected with RVFV

text: Germany

characteristic: geographic location (country and/or sea)

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not provided

text: Rift Valley fever virus

characteristic: organism

text: Rift Valley fever virus

text: iCLIP RVFV infected A549 cells


text: JUSTUS LIEBIG UNIVERSITY

text: public

text: ena-SAMPLE-TAB-07-11-2023-15:59:30:829-84171

characteristic: collecting institution

text: not provided

text: Lyudmila Shalamova

characteristic: collector name

text: Input N iCLIP of A549 cells infected with RVFV

characteristic: description

text: Germany

text: not applicable

characteristic: host common name

text: not applicable

characteristic: host health state

text: not applicable

text: not applicable

text: not applicable

text: not provided

text: Rift Valley fever virus

text: Rift Valley fever virus

text: iCLIP RVFV infected A549 cells, input

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCMAR

characteristic: INSDC first public

text: public

text: Centro de Ci�ncias do Mar do Algarve (CCMAR), Universidade do Algarve, campus de Gambelas, Edif�cio 7, 8005-139 Faro

text: Iberochondrostoma almacai blood for HMW DNA extraction

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Algarve, S�o Marcos da Serra

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: lifestage

text: Iberochondrostoma almacai

text: blood

characteristic: organism part

text: ORG.one project Iberochondrostoma almacai

characteristic: project name

text: Iberochondrostoma almacai

text: Iberochondrostoma almacai blood

characteristic: tolid


test

text: Royal Veterinary College

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: test

tag: Namespace:Royal Veterinary College

characteristic: Submitter Id

text: chicken

characteristic: common name

text: Uninfected 1

characteristic: description

text: Gallus gallus

characteristic: organism

text: Gallus gallus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Nottingham

characteristic: INSDC first public

text: public

tag: Namespace:University of Nottingham

characteristic: collection date

text: three-spined stickleback

text: three-spined stickleback fish collected from experimental ponds

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: fin

characteristic: title


text: Inserm U1016 - Institut Cochin

text: public

text: ena-SAMPLE-TAB-09-11-2023-16:02:53:462-104040

tag: Namespace:Inserm U1016 - Institut Cochin

text: Primary spermatocyte

text: house mouse

text: ChIPseq on H3K79me2 in primary spermatocyte (replicat 1)

text: France

text: Mus musculus

text: Mus musculus

text: Testis


text: Inserm U1016 - Institut Cochin

text: public

text: ena-SAMPLE-TAB-09-11-2023-16:02:53:462-104041

text: Primary spermatocyte

text: house mouse

text: ChIPseq on H3K79me2 in primary spermatocyte (replicat 2)

text: France

text: Mus musculus

text: Mus musculus

text: Testis


text: Inserm U1016 - Institut Cochin

text: public

text: ena-SAMPLE-TAB-09-11-2023-16:02:53:462-104042

text: Primary spermatocyte

text: house mouse

text: ChIPseq input in primary spermatocyte

text: France

text: Mus musculus

text: Mus musculus

text: Testis


text: Inserm U1016 - Institut Cochin

text: public

text: ena-SAMPLE-TAB-09-11-2023-16:02:53:462-104043

text: Elongated spermatid

text: house mouse

text: ChIPseq on H3K79me2 in elongated spermatid (replicat 1)

text: France

text: Mus musculus

text: Mus musculus

text: Testis


text: Inserm U1016 - Institut Cochin

text: public

text: ena-SAMPLE-TAB-09-11-2023-16:02:53:462-104044

text: Elongated spermatid

text: house mouse

text: ChIPseq on H3K79me2 in elongated spermatid (replicat 2)

text: France

text: Mus musculus

text: Mus musculus

text: Testis


Streptococcus dentisani 7746

text: FISABIONGS

text: public

text: Streptococcus dentisani 7746

text: FISABIONGS

characteristic: broker name

text: Streptococcus dentisani 7746

text: Spain

text: Streptococcus oralis subsp. dentisani

text: Streptococcus oralis subsp. dentisani

text: Genomic and experimental analysis of S. dentisani 7746 demonstrates pH buffering capacity.


AobtHiC

text: Evolutionary Biology Centre

characteristic: INSDC center name

text: public

text: AobtHiC

tag: Namespace:Evolutionary Biology Centre

text: Göran Arnqvist, Uppsala University

text: Uppsala University

text: We used a single sample of live male A. obtectus from an isogenic reference laboratory line for Hi-C sequencing.

text: Adult males

text: Serbia

text: Belgrade, Serbia

characteristic: geographic location (region and locality)

text: Göran Arnqvist

text: Acanthoscelides obtectus

text: Acanthoscelides obtectus

text: male

characteristic: sex

text: Whole body

text: HiC assembly of Acanthoscelides obtectus


text: CGR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: United Kingdom

text: Pseudomonas aeruginosa 059A

text: Pseudomonas aeruginosa 059A


text: SBiK-F

text: public

characteristic: Submitter Id

text: Pooled metagenome from lichen thallus

characteristic: description

text: Spain

text: Lasallia pustulata

text: Lasallia pustulata


characteristic: ENA-CHECKLIST

text: CGR

text: public

text: human

characteristic: common name

text: United Kingdom

text: Homo sapiens

characteristic: organism

text: Homo sapiens


MdLES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGR

text: public

text: MdLES

text: human

text: MdLES

text: United Kingdom

text: Homo sapiens

text: Homo sapiens

text: MdLES


OSIRIS

text: CGR

characteristic: INSDC first public

text: public

text: OSIRIS

characteristic: collection date

text: human

text: OSIRIS

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: OSIRIS


SCI Inv TAi evo 1

text: Pasteur Institute

characteristic: INSDC center name

text: public

text: SCI Inv TAi evo 1

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and all TA cassettes are inactivated by introduction of an in frame STOP codon, then cultivated in presence of intIA overnight, clone 1

text: France

text: R824 evo 1

characteristic: title


SCI Inv TAi evo 2

text: Pasteur Institute

text: public

text: SCI Inv TAi evo 2

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and all TA cassettes are inactivated by introduction of an in frame STOP codon, then cultivated in presence of intIA overnight, clone 2

text: France

text: R824 evo 2


SCI Inv TAi evo 3

text: Pasteur Institute

text: public

text: SCI Inv TAi evo 3

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and all TA cassettes are inactivated by introduction of an in frame STOP codon, then cultivated in presence of intIA overnight, clone 3

text: France

text: R824 evo 3


SCI Inv TAi evo 4

text: Pasteur Institute

text: public

text: SCI Inv TAi evo 4

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and all TA cassettes are inactivated by introduction of an in frame STOP codon, then cultivated in presence of intIA overnight, clone 4

text: France

text: R824 evo 4


SCI deloc lead + int, EXP

text: Pasteur Institute

text: public

text: SCI deloc lead + int, EXP

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI was relocated to the chr 1 near the origin, such that its attCbs are located on the replication leading strand template. gDNA extracted from exponentially growing culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: L154 EXP


SCI deloc lead + int, STAT

text: Pasteur Institute

text: public

text: SCI deloc lead + int, STAT

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI was relocated to the chr 1 near the origin, such that its attCbs are located on the replication leading strand template. gDNA extracted from stationary phase culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: L154 STAT


SCI deloc lag + int, EXP

text: Pasteur Institute

text: public

text: SCI deloc lag + int, EXP

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI was relocated to the chr 1 near the origin, such that its attCbs are located on the replication lagging strand template. gDNA extracted from exponentially growing culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: L117 EXP


SCI deloc lag + int, STAT

text: Pasteur Institute

text: public

text: SCI deloc lag + int, STAT

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI was relocated to the chr 1 near the origin, such that its attCbs are located on the replication lagging strand template. gDNA extracted from stationary phase culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: L117 STAT


SCI Inv + int, EXP

text: Pasteur Institute

text: public

text: SCI Inv + int, EXP

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and transformed with a plasmid encoding a catalytically inactive variant of intIA. gDNA extracted from exponentially growing culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: K888 EXP


SCI Inv + int, STAT

text: Pasteur Institute

text: public

text: SCI Inv + int, STAT

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is inverted and transformed with a plasmid encoding a catalytically inactive variant of intIA. gDNA extracted from stationary phase culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: K888 STAT


SCI Reinv + int, EXP

text: Pasteur Institute

text: public

text: SCI Reinv + int, EXP

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is reinverted to its original orientation and transformed with a plasmid encoding a catalytically inactive variant of intIA. gDNA extracted from exponentially growing culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: K898 EXP


SCI Reinv + int, STAT

text: Pasteur Institute

text: public

text: SCI Reinv + int, STAT

text: Vibrio cholerae O1 biovar El Tor str. N16961 where the SCI is reinverted to its original orientation and transformed with a plasmid encoding a catalytically inactive variant of intIA. gDNA extracted from stationary phase culture expressing intIA to perform marker frequency analysis (MFA)

text: France

text: K898 STAT


text: Mohammed Al Abri

text: public

tag: Namespace:Mohammed Al Abri

text: Arabian camel

text: Camel Hair

text: Oman

text: Camelus dromedarius

text: Camelus dromedarius

text: camel


characteristic: ENA first public

text: ANPC

text: public

text: biomaterial containment unit

characteristic: broad-scale environmental context

text: effluent from 15-day fermentation of pig manure with thermally-pretreated anaerobic sludge from a pig wastewater treatment plant as inoculum

text: anaerobic digester sludge

characteristic: environmental medium

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: anaerobic sludge blacket reactor

characteristic: local environmental context

text: anaerobic digester metagenome

characteristic: pH

text: Enhancing volatile fatty acid production in pig manure fermentation through short thermal pretreatment

characteristic: project name

text: anaerobic digester metagenome

unit: days

characteristic: time


characteristic: ENA-CHECKLIST

text: ANPC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biomaterial containment unit

text: thermally-pretreated anaerobic sludge from a pig wastewater treatment plant

characteristic: description

text: anaerobic digester sludge

text: Colombia

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

characteristic: organism

text: anaerobic digester metagenome


characteristic: External Id

text: ANPC

characteristic: INSDC center name

text: public

text: biomaterial containment unit

characteristic: collection date

text: effluent from 15-day fermentation of thermally-pretreated anaerobic sludge from a pig wastewater treatment plant

text: anaerobic digester sludge

text: Colombia

characteristic: geographic location (country and/or sea)

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome

characteristic: title


characteristic: ENA first public

text: ANPC

text: public

text: biomaterial containment unit

characteristic: broad-scale environmental context

text: thermally-pretreated anaerobic sludge from a brewery wastewater treatment plant

text: anaerobic digester sludge

characteristic: environmental medium

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome


characteristic: ENA-CHECKLIST

text: ANPC

text: public

text: biomaterial containment unit

text: effluent from 15-day fermentation of thermally-pretreated anaerobic sludge from a brewery wastewater treatment plant

text: anaerobic digester sludge

text: Colombia

text: anaerobic sludge blacket reactor

characteristic: local environmental context

text: anaerobic digester metagenome

characteristic: pH

characteristic: project name

text: anaerobic digester metagenome

characteristic: time


text: ANPC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biomaterial containment unit

text: thermally-pretreated anaerobic sludge from an urban wastewater treatment plant

characteristic: description

text: anaerobic digester sludge

text: Colombia

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome


characteristic: External Id

text: ANPC

characteristic: INSDC center name

text: public

text: biomaterial containment unit

characteristic: collection date

text: effluent from 15-day fermentation of thermally-pretreated anaerobic sludge from an urban wastewater treatment plant

text: anaerobic digester sludge

text: Colombia

characteristic: geographic location (country and/or sea)

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

characteristic: organism

text: anaerobic digester metagenome


characteristic: ENA first public

text: ANPC

text: public

text: biomaterial containment unit

characteristic: broad-scale environmental context

text: anaerobic sludge from a pig wastewater treatment plant (control)

text: anaerobic digester sludge

characteristic: environmental medium

text: Colombia

characteristic: geographic location (latitude)

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: ASPW

characteristic: title


characteristic: ENA-CHECKLIST

text: ANPC

text: public

text: biomaterial containment unit

text: effluent from 15-day fermentation of anaerobic sludge from a pig wastewater treatment plant (control)

text: anaerobic digester sludge

text: Colombia

characteristic: geographic location (longitude)

text: anaerobic sludge blacket reactor

characteristic: local environmental context

text: anaerobic digester metagenome

characteristic: pH

characteristic: project name

text: anaerobic digester metagenome

text: ASPW


text: ANPC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biomaterial containment unit

text: effluent from 15-day fermentation of pig manure with thermally-pretreated anaerobic sludge from a brewery wastewater treatment plant as inoculum

text: anaerobic digester sludge

text: Colombia

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome

characteristic: time


characteristic: External Id

text: ANPC

characteristic: INSDC center name

text: public

text: biomaterial containment unit

characteristic: collection date

text: anaerobic sludge from a brewery wastewater treatment plant (control)

characteristic: description

text: anaerobic digester sludge

text: Colombia

characteristic: geographic location (country and/or sea)

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: ASBW


characteristic: ENA first public

text: ANPC

text: public

text: biomaterial containment unit

characteristic: broad-scale environmental context

text: effluent from 15-day fermentation of anaerobic sludge from a brewery wastewater treatment plant (control)

text: anaerobic digester sludge

characteristic: environmental medium

text: Colombia

characteristic: geographic location (latitude)

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

characteristic: organism

text: anaerobic digester metagenome

text: ASBW


characteristic: ENA-CHECKLIST

text: ANPC

text: public

text: biomaterial containment unit

text: anaerobic sludge from an urban wastewater treatment plant (control)

text: anaerobic digester sludge

text: Colombia

characteristic: geographic location (longitude)

text: anaerobic sludge blacket reactor

characteristic: local environmental context

text: anaerobic digester metagenome

characteristic: pH

text: anaerobic digester metagenome

text: ASUW

characteristic: title


text: ANPC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biomaterial containment unit

text: effluent from 15-day fermentation of anaerobic sludge from an urban wastewater treatment plant (control)

text: anaerobic digester sludge

text: Colombia

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

characteristic: project name

text: anaerobic digester metagenome

text: ASUW


characteristic: External Id

text: ANPC

characteristic: INSDC center name

text: public

text: biomaterial containment unit

characteristic: collection date

text: effluent from 15-day fermentation of pig manure with thermally-pretreated anaerobic sludge from an urban wastewater treatment plant as inoculum

characteristic: description

text: anaerobic digester sludge

text: Colombia

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome

characteristic: time


characteristic: ENA first public

text: ANPC

text: public

text: biomaterial containment unit

characteristic: broad-scale environmental context

text: effluent from 15-day fermentation of pig manure with anaerobic sludge from a pig wastewater treatment plant as inoculum

text: anaerobic digester sludge

characteristic: environmental medium

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: anaerobic digester metagenome


characteristic: ENA-CHECKLIST

text: ANPC

text: public

text: biomaterial containment unit

text: effluent from 15-day fermentation of pig manure with anaerobic sludge from a prewery wastewater treatment plant as inoculum

text: anaerobic digester sludge

text: Colombia

characteristic: geographic location (longitude)

text: anaerobic sludge blacket reactor

characteristic: local environmental context

text: anaerobic digester metagenome

characteristic: organism

characteristic: pH

text: anaerobic digester metagenome


text: ANPC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biomaterial containment unit

text: effluent from 15-day fermentation of pig manure with anaerobic sludge from an urban wastewater treatment plant as inoculum

text: anaerobic digester sludge

text: Colombia

text: anaerobic sludge blacket reactor

text: anaerobic digester metagenome

text: Enhancing volatile fatty acid production in pig manure fermentation through short thermal pretreatment

text: anaerobic digester metagenome

characteristic: title


ESCOL

characteristic: External Id

text: ANPC

characteristic: INSDC center name

text: public

text: ESCOL

text: not applicable

characteristic: collection date

text: DNA from E. coli used as sequencing control

characteristic: description

text: not applicable

text: Colombia

text: not applicable

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: control


MIX

characteristic: ENA first public

text: ANPC

text: public

text: MIX

text: not applicable

characteristic: broad-scale environmental context

text: Mix of E. coli, K. pneumoniae used as sequencing control

text: not applicable

characteristic: environmental medium

text: Colombia

characteristic: geographic location (country and/or sea)

text: not applicable

text: mixed culture metagenome

text: mixed culture metagenome

characteristic: time

text: control


REACT

characteristic: ENA-CHECKLIST

text: ANPC

text: public

text: REACT

text: not applicable

text: Negative control, DNA from extraction kit reagents

text: not applicable

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not applicable

characteristic: local environmental context

text: mixed culture metagenome

characteristic: organism

text: mixed culture metagenome

text: control


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IFREMER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: GV team (IFREMER)

text: France

text: Brest

characteristic: geographic location (region and locality)

text: oyster

text: Vibrio crassostreae

text: Vibrio crassostreae

characteristic: strain


characteristic: External Id

text: IFREMER

characteristic: INSDC center name

text: public

text: GV team (IFREMER)

characteristic: collection date

characteristic: description

text: France

text: Brest

text: seawater

text: Vibrio crassostreae

text: Vibrio crassostreae

characteristic: title


BE

characteristic: ENA-CHECKLIST

text: Uppsala universitet

text: public

text: BE

tag: Namespace:Uppsala universitet

text: Pool of eggs from females backrossed to Swedish population from F1 hybrids between Swedish and Catalan individuals.

text: Sweden

characteristic: geographic location (country and/or sea)

text: Leptidea sinapis

text: Leptidea sinapis

text: BE


DE

tag: attribute

text: Uppsala universitet

text: public

text: DE

text: Pool of dead F2 intercross embryos in a cross between Swedish and Catalan individuals.

text: Sweden

text: Leptidea sinapis

characteristic: organism

text: Leptidea sinapis

text: DE


DLDP

characteristic: ENA-FIRST-PUBLIC

text: Uppsala universitet

text: public

text: DLDP

text: Pool of dead F2 intercross larvae and pupae in a cross between Swedish and Catalan individuals.

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis

text: DLDP


characteristic: ENA-LAST-UPDATE

text: Uppsala universitet

text: public

text: Pool of female adult F2 intercross individuals in a cross between Swedish and Catalan individuals.

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis


text: Uppsala universitet

characteristic: INSDC first public

text: public

text: Pool of male adult F2 intercross individuals in a cross between Swedish and Catalan individuals.

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis


EP

text: Uppsala universitet

characteristic: INSDC last update

text: public

text: EP

text: Pool of F2 intercross eggs in a cross between Swedish and Catalan individuals.

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis

text: EP


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: not provided

text: malaria parasite P. falciparum

characteristic: common name

text: not provided

text: Plasmodium falciparum

text: cDNA from 10x postGEM-RT amplification, re-amplified

text: Plasmodium falciparum


Fregilupus varius NRM 59.73

text: Swedish Museum of Natural History

text: public

characteristic: SRA accession

text: Fregilupus varius NRM 59.73

tag: Namespace:Swedish Museum of Natural History

characteristic: Submitter Id

text: museum sample

text: Reunion

text: Fregilupus varius

text: Fregilupus varius

text: NRM 523079

text: foot pad


characteristic: External Id

text: UCL IHA

text: public

tag: Namespace:UCL IHA

text: fission yeast

text: R4 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UCL IHA

characteristic: INSDC center name

text: public

text: fission yeast

text: R34 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UCL IHA

text: public

characteristic: collection date

text: fission yeast

text: R44 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UCL IHA

text: public

text: fission yeast

text: R45 segregant

characteristic: description

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UCL IHA

text: public

text: fission yeast

text: R48 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: title


characteristic: ENA-CHECKLIST

text: UCL IHA

text: public

text: fission yeast

text: R49 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UCL IHA

text: public

text: fission yeast

text: R50 segregant

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UCL IHA

text: public

text: fission yeast

text: R51 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe


characteristic: ENA-FIRST-PUBLIC

text: UCL IHA

text: public

text: fission yeast

text: R52 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


characteristic: ENA-LAST-UPDATE

text: UCL IHA

text: public

text: fission yeast

text: R53 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UCL IHA

characteristic: INSDC first public

text: public

text: fission yeast

text: R54 segregant

text: United Kingdom

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


characteristic: INSDC last update

text: public

tag: Namespace:Bielefeld University, Omics CF NGS Unit Universitätsstraße 27,  33615, Bielefeld, Germany Bielefeld University, Medical Faculty OWL Universitätsstraße 27,  33615, Bielefeld, Germany

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: Bacteria were harvested in ice-cold killing buffer (50 mM Tris pH 7.5, 5 mM MgCl2, 20 mM NaN3), centrifuged at 4750 rpm for 10 min at 4°C and the pellets were immediately frozen in liquid nitrogen and stored at −80°C. S.p. were cultivated in supplemented RPMI medium in the presence or absence of 10% FCS, which was added to the +FCS culture at an OD600 of 0.3. The control1 culture was harvested prior to FCS treatment. The +FCS and –FCS cultures were harvested after 2 hours of growth after reaching OD600 of 0.3. The bacteria were not treteated at an OD600 of 0.3 with FCS RNA isolation was performed using an acidic phenol-chloroform extraction protocol (Wetzstein et al., 1992). After DNase-I treatment (Zymo Research, Germany), the RNA quality was checked by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). For RNA-seq transcriptomics, Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, United States) was applied to prepare the cDNA libraries.

text: not collected

text: not applicable

characteristic: isolate

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

characteristic: organism part

text: Streptococcus pneumoniae

characteristic: strain


text: Bielefeld University, Omics CF NGS Unit Universitätsstraße 27,  33615, Bielefeld, Germany Bielefeld University, Medical Faculty OWL Universitätsstraße 27,  33615, Bielefeld, Germany

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: not collected

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: Protocols: Bacteria were harvested in ice-cold killing buffer (50 mM Tris pH 7.5, 5 mM MgCl2, 20 mM NaN3), centrifuged at 4750 rpm for 10 min at 4°C and the pellets were immediately frozen in liquid nitrogen and stored at −80°C. S.p. were cultivated in supplemented RPMI medium in the presence or absence of 10% FCS, which was added to the +FCS culture at an OD600 of 0.3. The control1 culture was harvested prior to FCS treatment. The +FCS and –FCS cultures were harvested after 2 hours of growth after reaching OD600 of 0.3. 10% FCS, was added to the +FCS culture at an OD600 of 0.3 for 2 hours. RNA isolation was performed using an acidic phenol-chloroform extraction protocol (Wetzstein et al., 1992). After DNase-I treatment (Zymo Research, Germany), the RNA quality was checked by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). For RNA-seq transcriptomics, Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, United States) was applied to prepare the cDNA libraries.

text: not collected

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae


characteristic: ENA-CHECKLIST

text: CNRS

text: public

text: monoisolate

characteristic: description

text: USA

text: Vibrio sp. 16

text: Vibrio sp. 16

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: CIPH

text: public

text: Croatia

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host scientific name

text: Bordetella pertussis 137

characteristic: organism

text: Bordetella pertussis 137


characteristic: ENA-LAST-UPDATE

text: UKL-HUG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broad-scale environmental context

characteristic: environmental medium

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: human blood metagenome

text: iUPD 18 case study 2023

characteristic: project name

text: human blood metagenome

text: Ilumina NovaSeq 6000

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IBE

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Euglena gracilis Z, eccDNA enrichment fraction, steady state

text: Poland

text: Euglena gracilis

text: Euglena gracilis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IBE

text: public

text: Euglena gracilis Z, eccDNA enrichment fraction, UV-irradiated

characteristic: description

text: Poland

characteristic: geographic location (country and/or sea)

text: Euglena gracilis

characteristic: organism

text: Euglena gracilis

characteristic: title


E-MTAB-13548:LOC PC TUN 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13548:LOC PC TUN 1

tag: Namespace:Department of Cell physiology and metabolism

text: ArrayExpress

characteristic: broker name

text: sorted PC low

text: mouse embryonic fibroblast cell

text: not collected

text: house mouse

characteristic: common name

text: Protocols: CAMPARI2 PC for screening was performed in 60 mm plates by lighting with 365, 385 420 nm Led light (Cholis High-Power Led source (Thorlabs) for 3 minutes at 25mW/cm2. We then FACS sorted the low 10% photoconverted cells, Tunicamycin 100ng/ml was used for 4 hours before PC isolated their genomic DNA using JetQuick™ Blood and Cell Culture DNA Midiprep Kit (A30703, Thermo). See original de brie library please Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9. Doench JG, Fusi N, Sullender M, Hegde M, Vaimberg EW, Donovan KF, Smith I, Tothova Z, Wilen C, Orchard R, Virgin HW, Listgarten J, Root DE. Nat Biotechnol. 2016 Jan 18. doi: 10.1038/nbt.3437.

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: embryo

characteristic: organism part

text: Mus musculus

text: LOC PC TUN 1


E-MTAB-13548:LOW PC 1

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Department of Cell physiology and metabolism

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13548:LOW PC 1

characteristic: Submitter Id

text: ArrayExpress

text: sorted PC low

text: mouse embryonic fibroblast cell

text: not collected

text: house mouse

text: embryo

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: embryo

text: Mus musculus

text: LOW PC 1


E-MTAB-13548:LOW PC 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-13548:LOW PC 2

text: ArrayExpress

text: sorted PC low

text: mouse embryonic fibroblast cell

text: not collected

characteristic: collection date

text: house mouse

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryo

text: Mus musculus

text: LOW PC 2


E-MTAB-13548:unsorted 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13548:unsorted 1

text: ArrayExpress

characteristic: broker name

text: control

text: mouse embryonic fibroblast cell

text: not collected

text: house mouse

characteristic: common name

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: embryo

text: Mus musculus

text: unsorted 1

characteristic: title


E-MTAB-13548:unsorted 2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-13548:unsorted 2

text: ArrayExpress

text: sorted PC low

text: mouse embryonic fibroblast cell

text: not collected

text: house mouse

text: embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: embryo

characteristic: organism part

text: Mus musculus

text: unsorted 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Middle East Technical University

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Middle East Technical University

characteristic: Submitter Id

text: Cyprus mouflon

text: Modern mouflon sample from Cyprus (genetically identical with cym012).

text: Cyprus

text: Ovis orientalis ophion

text: Ovis orientalis ophion


text: Middle East Technical University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Cyprus mouflon

text: Modern mouflon sample from Cyprus (genetically identical with cym011).

characteristic: description

text: Cyprus

characteristic: geographic location (country and/or sea)

text: Ovis orientalis ophion

characteristic: organism

text: Ovis orientalis ophion


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Middle East Technical University

text: public

text: Modern mouflon sample from Turkey.

text: Turkey

text: Ovis orientalis anatolica

text: Ovis orientalis anatolica

characteristic: title


text: LMU Munich

text: public

tag: Namespace:LMU Munich

text: Brain and eyes, 10 day old adult male

text: Colombia

text: Heliconius cydno cydno

text: Heliconius cydno cydno


text: LMU Munich

text: public

text: Brain and eyes, 10 day old adult male

text: Panama

text: Heliconius melpomene amaryllis

text: Heliconius melpomene amaryllis


text: LMU Munich

text: public

text: Brain and eyes, 10 day old adult male

text: Colombia

text: Heliconius melpomene bellula

text: Heliconius melpomene bellula


text: LMU Munich

text: public

text: postman butterfly

characteristic: common name

text: Brain and eyes, 10 day old adult male

text: Colombia

text: Heliconius melpomene

text: Heliconius melpomene


text: LMU Munich

text: public

text: Brain and eyes, 10 day old adult male

text: Colombia

text: Heliconius tristero

text: Heliconius tristero


text: public

tag: Namespace:Department of Biochemistry and Molecular Biology University of Southern Denmark

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: Protocols: Cells were washed in PBS and harvested for RNA extraction after 48 hours following SSO transfection. Cells were cultured at 37°C, 5% CO2, in RPMI-1640 medium (Sigma Aldrich, United Kingdom) supplemented with fetal bovine serum (10%), L-glutamine (4 mM), and penicillin (100 U/ml)/streptomycin (100 µg/ml). CRISPR-edited HepG2 cells were transfected with splice-switching antisense oligonucleotides (SSO); RNA oligonucleotides with 2’-O-methyl modifications and phosphorothioate backbones (LGC Biosearch Technologies, Denmark), at 20 nM final concentrations. Cells were transfected with a non-targeting control SSO (5’-AUGUUCUAUGAAAUUCACAGUGUUG-3’) or SSO 2 targeting a pseudoexon sequence in PCCA intron 14 (5’-GCUCAAUAUGCUACUGCCAUGCUUG-3’). SSO transfection was performed at the time of cell seeding (200,000 cells/well in 12-well plates; 3.5 cm2/well) using Lipofectamine RNAiMAX Transfection Reagent (Invitrogen, CA, USA) and harvested for RNA extraction after 48 hours. Gene editing was performed using the Alt-R CRISPR-Cas12a (Cpf1) system (Integrated DNA Technologies, IA, USA) for homology-directed repair in HepG2 cells. Cas12a:crRNA (5’-UAAUUUCUACUCUUGUAGAUAGGACAUAAACUGAUGUUCUAUG-3’) ribonucleoprotein was co-transfected with a 75 nt single-stranded DNA donor template of the PCCA c.1285-1416A>G sequence variant (¬¬¬-37/+37 nt) using Lipofectamine CRISPRMAX Transfection Reagent (Invitrogen, CA, USA). Cell cultures were expanded from single cell colonies and genotypes were verified by Sanger sequencing: HepG2 PCCA MUT cells functionally hemizygous for PCCA c.1285-1416A>G with a large complex deletion on the other allele (spanning from intron 12 to intron 14), HepG2 PCCA Del7 cells homozygous for PCCA c.1285-1411delTAGAACA, and HepG2 PCCA WT with no editing introduced in the PCCA gene. Total RNA was extracted from cells using TRIzol Reagent (Ambion, CA, USA) by phase separation with chloroform and precipitation in isopropanol. RNA purity was estimated on a NanoDrop 2000c spectrophotometer, and RNA integrity was estimated on an Agilent 2100 Bioanalyzer using the RNA 6000 Nano Kit (Agilent Technologies, CA, USA). RNA with a 260/280 absorbance ratio >1.8 and RNA integrity number (RIN) >8.0 was used for library preparation. Library preparation was performed using the NEBNext Ultra II Directional RNA Library Prep Kit (New England Biolabs, MA, USA) with rRNA depletion. Size estimation of the amplified cDNA libraries was performed on an Agilent 2100 Bioanalyzer using the DNA 1000 Kit (Agilent Technologies, CA, USA), and concentrations were estimated by qPCR using the KAPA Library Quantification Kit (Roche, South Africa).

text: juvenile

characteristic: developmental stage

text: hepatocellular carcinoma

characteristic: disease

text: PCCA c.1285-1411delTAGAACA (homozygous)

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Biochemistry and Molecular Biology University of Southern Denmark

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

text: juvenile

text: hepatocellular carcinoma

text: PCCA c.1285-1411delTAGAACA (homozygous)

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: juvenile

text: hepatocellular carcinoma

text: PCCA c.1285-1416A>G / null

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: juvenile

characteristic: developmental stage

text: hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Institute of Oncology

text: public

tag: Namespace:European Institute of Oncology

text: house mouse

text: scRNA-Seq

text: 4 - 5 months

text: Italy

text: Mus musculus

text: Mus musculus

text: M

characteristic: sex

characteristic: strain

text: scRNA-Seq Accession CR_rep2


text: INRA (INRA Toulouse)

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRA (INRA Toulouse)

characteristic: Submitter Id

text: sheep

text: DNA extracted from blood

text: France

text: Ovis aries

text: Ovis aries

text: male

text: Blood


text: LMU Munich

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Brain and eyes, 10 day old adult males

characteristic: description

text: Colombia

text: Heliconius cydno chioneus

text: Heliconius cydno chioneus


characteristic: ENA-CHECKLIST

characteristic: External Id

text: LMU Munich

text: public

text: Brain and eyes, 10 day old adult males

text: Colombia

characteristic: geographic location (country and/or sea)

text: Heliconius melpomene rosina

characteristic: organism

text: Heliconius melpomene rosina


text: LMU Munich

text: public

text: Brain and eyes, 10 day old adult males

text: Colombia

text: Heliconius tristero

text: Heliconius tristero


text: CHRISTIAN MEDICAL COLLEGE

text: public

tag: Namespace:CHRISTIAN MEDICAL COLLEGE

text: Christian Medical College,Vellore

text: India

text: Vellore

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Christian Medical College,Vellore

characteristic: isolate

text: Blood

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: serovar

text: CMC

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHRISTIAN MEDICAL COLLEGE

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Christian Medical College,Vellore

text: India

text: Vellore

text: diseased

text: homo sapiens

text: Christian Medical College,Vellore

text: Sputum

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: CMC

characteristic: strain


text: Linda

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: quagga mussel

characteristic: common name

text: Switzerland

text: Dreissena rostriformis bugensis

text: Dreissena rostriformis bugensis


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Linda

text: public

text: quagga mussel

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Dreissena rostriformis bugensis

characteristic: organism

text: Dreissena rostriformis bugensis


text: Linda

text: public

text: quagga mussel

text: positive control

text: Switzerland

text: Dreissena rostriformis bugensis

text: Dreissena rostriformis bugensis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Linda

text: public

text: Switzerland

text: Dreissena polymorpha

text: Dreissena polymorpha


characteristic: ENA first public

text: UNIVERSITY OF OULU

text: public

tag: Namespace:UNIVERSITY OF OULU

characteristic: broad-scale environmental context

characteristic: depth

text: Soil 2 sample exposed to stratospheric conditions, RNA

characteristic: elevation

characteristic: environmental medium

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: soil metagenome

text: Microbial communities in coagulant-treated sewage sludge

characteristic: project name

text: soil metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Soil 2 sample exposed to stratospheric conditions, DNA

text: Finland

text: soil metagenome

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF OULU

text: public

text: Soil 2 sample earthbound control, RNA

characteristic: description

text: Finland

characteristic: geographic location (country and/or sea)

text: soil metagenome

characteristic: organism

text: soil metagenome

characteristic: title


characteristic: ENA first public

text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: depth

text: Soil 2 sample earthbound control, DNA

characteristic: elevation

characteristic: environmental medium

text: Finland

text: soil metagenome

text: soil metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: Soil 1 sample exposed to stratospheric conditions, RNA

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: soil metagenome

characteristic: project name

text: soil metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Soil 1 sample exposed to stratospheric conditions, DNA

text: Finland

text: soil metagenome

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF OULU

text: public

text: Soil 1 sample earthbound control, RNA

characteristic: description

text: Finland

characteristic: geographic location (country and/or sea)

text: soil metagenome

characteristic: organism

text: soil metagenome


characteristic: ENA first public

text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: depth

text: Soil 1 sample earthbound control, DNA

characteristic: elevation

text: Finland

text: soil metagenome

text: soil metagenome

characteristic: title


text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: Lake sediment sample exposed to stratospheric conditions, RNA

characteristic: environmental medium

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: soil metagenome

text: soil metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Lake sediment sample exposed to stratospheric conditions, DNA

text: Finland

text: soil metagenome

characteristic: project name

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF OULU

text: public

characteristic: collection date

text: Lake sediment sample earthbound control, RNA

characteristic: description

text: Finland

characteristic: geographic location (country and/or sea)

text: soil metagenome

text: soil metagenome


characteristic: ENA first public

text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: depth

text: Lake sediment sample earthbound control, DNA

characteristic: elevation

text: Finland

text: soil metagenome

characteristic: organism

text: soil metagenome


text: GT

text: not applicable

characteristic: ArrayExpress-SEX

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Not Applicable

characteristic: GENDER

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: HUVEC

text: not applicable

text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Not Applicable

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: not applicable

text: Homo sapiens

text: Not Applicable

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Schistosoma mansoni

text: Puerto Rican

text: SC

text: public

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni


text: SMITHSONIAN INSTITUTION

text: public

tag: Namespace:SMITHSONIAN INSTITUTION

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

characteristic: depth

text: Site 12A1 Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

unit: psu

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

unit: °C

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

unit: ºC

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 12A2 Mangrove sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

characteristic: organism

text: Transisthmian Marine Virome

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: title


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 12A3 Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 12A4 Mangrove sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 13A1 Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 13A2 Mangrove sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 13A3 Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 13A4 Mangrove sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 14A1 Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 14A2 Mangrove sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 14A3 Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 14A4 Mangrove sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 10A Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 10B Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


text: SMITHSONIAN INSTITUTION

text: public

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characteristic: depth

text: Site 11A Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 11B Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


text: SMITHSONIAN INSTITUTION

text: public

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characteristic: depth

text: Site 11C Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

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characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 13B Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 13C Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

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text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 14B Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


text: SMITHSONIAN INSTITUTION

text: public

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characteristic: depth

text: Site 14C Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 14E Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


text: SMITHSONIAN INSTITUTION

text: public

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characteristic: depth

text: Site 15A Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 15B Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 8A Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

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characteristic: sequencing method

characteristic: temperature


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 8B Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site 9A Reef sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site 9B Reef sample

text: Panama

text: Panama, Isla Coiba

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site ALR Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Bocas del Toro

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site CCR Mangrove sample

text: Panama

text: Panama, Bocas del Toro

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site IPI Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Bocas del Toro

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMITHSONIAN INSTITUTION

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: < 2

text: Site MAR Mangrove sample

text: Panama

text: Panama, Bocas del Toro

text: uncultured bacterium

text: Transisthmian Marine Virome

text: 0.22uM filtration

characteristic: sample collection device

text: uncultured bacterium

text: illumina nextseq

characteristic: title


text: SMITHSONIAN INSTITUTION

text: public

text: < 2

characteristic: depth

text: Site MYS Mangrove sample

characteristic: description

characteristic: environmental medium

text: Panama

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Bocas del Toro

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

characteristic: organism

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq