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text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 60


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 61

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 62


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: insect host-parasite biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 63


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 64

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 65


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: insect host-parasite biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 66


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 67

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 68


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: insect host-parasite biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 69


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 70

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 71


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: insect host-parasite biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 72


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 73

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 74


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: insect host-parasite biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 75


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 76

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 77


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: insect host-parasite biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 78


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 79

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 80


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: insect host-parasite biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Paddy rice field

characteristic: environmental medium

text: Cambodia

characteristic: host taxid

text: Grassy area

text: marine plankton metagenome

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 81


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UU

text: public

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

text: Grassy area

characteristic: local environmental context

text: marine plankton metagenome

characteristic: pcr primers

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Microbial host-parasite sample 82

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: insect host-parasite biome

text: Paddy rice field

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Grassy area

text: marine plankton metagenome

characteristic: organism

text: marine plankton metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Microbial host-parasite sample 83


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Open Genomes

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Open Genomes

characteristic: collection date

text: human

characteristic: common name

text: human donor

characteristic: description

text: Slovakia

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: human

text: HDLECs 4 kPa 1

text: Germany

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: University Medical Center Hamburg-Eppendorf

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: HDLECs 4 kPa 2

text: Germany

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: HDLECs 4 kPa 3

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: HUVECs 4 kPa 1

text: Germany

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

text: human

text: HUVECs 4 kPa 2

text: Germany

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: human

text: HUVECs 4 kPa 3

text: Germany

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC first public

text: public

text: human

text: HDLECs CTRL siRNA 1 CLDN5 low

text: Germany

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC last update

text: public

text: human

text: HDLECs CTRL siRNA 2 CLDN5 low

text: Germany

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

text: human

text: HDLECs CTRL siRNA 1 CLDN5 high

text: Germany

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: collection date

text: human

text: HDLECs CTRL siRNA 2 CLDN5 high

text: Germany

text: Homo sapiens

text: Homo sapiens


text: public

text: human

characteristic: common name

text: HDLECs PDE2A siRNA 1 CLDN5 high

text: Germany

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: HDLECs PDE2A siRNA 2 CLDN5 high

characteristic: description

text: Germany

text: Homo sapiens

text: Homo sapiens


text: CIPH

text: public

text: Croatia

text: unknown

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Nasopharyngeal Swab

text: Bordetella pertussis 137

text: Bordetella pertussis 137


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ARRIAM

text: public

text: garden pea

text: sequence of chromatin precipitated with Anti-FLAG antibodies for PsIPD3~3XFLAG overexpressing roots with nodules

text: Russia

text: Pisum sativum

text: Pisum sativum

characteristic: title


text: UK Health Security Agency

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:UK Health Security Agency

characteristic: Submitter Id

text: Patient sample

text: United Kingdom

text: not provided

text: Homo sapiens

text: Unknown

text: Patient

text: 51.593841, -0.253612

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Unknown

characteristic: serovar

text: Unknown

characteristic: strain


Ramlet al-Baida

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: AUB

characteristic: INSDC first public

text: public

text: Ramlet al-Baida

text: Ramlet al-Baida sewage

text: Lebanon

characteristic: geographic location (country and/or sea)

text: virus

characteristic: investigation type

text: Ramlet al-Baida beach

characteristic: name of the sampling site

text: Escherichia phage AUBRB02

characteristic: organism

text: Escherichia phage AUBRB02

text: open sewer line

characteristic: sewage type

text: RB


text: QUADRAM INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:QUADRAM INSTITUTE

characteristic: broker name

characteristic: collection date

characteristic: description

text: United Kingdom

text: Not applicable

characteristic: isolate

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: QUADRAM INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: Not applicable

text: Campylobacter coli

text: Campylobacter coli

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OXFORD

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: not collected

characteristic: collection date

text: Ecoli CFT073 isolate ONT sequenced with r10.4.1 using Dorado model rerio

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: MRSA 252 isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OXFORD

characteristic: INSDC center name

text: public

text: not collected

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

characteristic: Submitter Id

text: not collected

text: Ecoli ST 8318 phylotype E BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 8318 phylotype E BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 624 phylotype F BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 624 phylotype F BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 362 phylotype D BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 362 phylotype D BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 48 phylotype A BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 48 phylotype A BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 10 phylotype A BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 10 phylotype A BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 23 phylotype C BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 23 phylotype C BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 131 phylotype B2 BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 131 phylotype B2 BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 646 phylotype B2 BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 646 phylotype B2 BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 5150 phylotype D BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 5150 phylotype D BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 58 phylotype B1 BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 58 phylotype B1 BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 2599 phylotype B1 BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 2599 phylotype B1 BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 117 phylotype G BSA_neg isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: not collected

text: Ecoli ST 117 phylotype G BSA_pos isolate ONT sequenced with r10.4.1 using Dorado model rerio

text: not collected

text: Escherichia coli

text: Escherichia coli


text: SC

text: public

text: SC

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Virology Department, Royal Infirmary of Edinburgh, NHS Lothian / School of Biological Sciences, University of Edinburgh by McHugh M, Dewar R, Rooke S, O'Toole Á, Scher E, Hill V, McCrone JT, Colquhoun R, Yu X, Jackson B, Rambaut A, Templeton K and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: SC

text: Virology Department, Royal Infirmary of Edinburgh, NHS Lothian / School of Biological Sciences, University of Edinburgh

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: title


characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: Western Cape

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: batch

text: rm

text: eppi

text: necropsy

text: Germany

characteristic: country

text: recipient mother

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: spf

characteristic: facility

text: True

text: RM

characteristic: generation

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:colon

text: mouse

text: not collected

text: grams

text: LANUV

characteristic: latitude

text: adult

characteristic: longitude

text: False

text: mouse gut metagenome

text: dna in freezer03.140

text: TRUE

text: colon content

text: colon content

text: mouse gut metagenome

text: nmol/well

text: female

characteristic: sex

text: Influence of the genetic background on murine gut microbiome composition and diversity over five generations


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: pb

characteristic: collection date

text: eppi

text: necropsy

text: Germany

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: spf

text: True

text: P

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:colon

text: mouse

text: balb/c

text: grams

text: LANUV

text: adult

text: False

text: mouse gut metagenome

text: dna in freezer03.140

text: TRUE

text: colon content

text: colon content

text: mouse gut metagenome

text: nmol/well

text: female


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: batch

text: eppi

text: necropsy

text: Germany

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: spf

text: True

text: Germany:Duesseldorf

text: Germany

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:colon

text: mouse

text: grams

text: LANUV

text: adult

text: False

text: mouse gut metagenome

characteristic: organism

text: dna in freezer03.140

text: TRUE

text: colon content

text: colon content

text: mouse gut metagenome

text: nmol/well

text: female

characteristic: title


text: UCSDMI

text: public

text: eppi

text: necropsy

text: Germany

characteristic: country

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: animal-associated habitat

text: sebum material

text: host-associated

text: spf

characteristic: facility

text: True

characteristic: generation

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:skin

text: UBERON:skin of external ear

text: UBERON:sebum

text: mouse

text: grams

text: LANUV

characteristic: latitude

text: adult

characteristic: longitude

text: False

text: mouse skin metagenome

text: dna in freezer03.140

text: TRUE

text: skin

text: skin of external ear

text: mouse skin metagenome

text: nmol/well

text: female

characteristic: sex

text: Skin screening


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: eppi

text: necropsy

text: Germany

text: not provided

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: spf

text: False

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:colon

text: mouse

text: grams

text: LANUV

text: adult

text: False

text: mouse gut metagenome

text: dna in freezer03.140

text: TRUE

text: colon content

text: colon content

text: mouse gut metagenome

text: nmol/well

text: female


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: batch

text: eppi

text: necropsy

text: Germany

text: not provided

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: animal-associated habitat

text: sebum material

text: host-associated

text: spf

text: False

text: Germany:Duesseldorf

text: Germany

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: weeks

text: UBERON:skin

text: UBERON:skin of external ear

text: UBERON:sebum

text: mouse

text: grams

text: LANUV

text: adult

text: False

text: mouse skin metagenome

characteristic: organism

text: dna in freezer03.140

text: TRUE

text: skin

text: skin of external ear

text: mouse skin metagenome

text: nmol/well

text: female

text: Skin screening

characteristic: title


text: UCSDMI

text: public

text: eppi

text: necropsy

text: Germany

characteristic: country

text: not provided

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: animal-associated habitat

text: sebum material

text: host-associated

text: spf

characteristic: facility

text: False

characteristic: generation

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:skin

text: UBERON:skin of external ear

text: UBERON:sebum

text: mouse

text: grams

text: LANUV

characteristic: latitude

text: adult

characteristic: longitude

text: False

text: mouse skin metagenome

text: dna in freezer03.140

text: TRUE

text: skin

text: skin of external ear

text: mouse skin metagenome

text: nmol/well

text: female

characteristic: sex

text: Skin screening


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: eppi

text: necropsy

text: Germany

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: spf

text: False

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:colon

text: mouse

text: grams

text: LANUV

text: adult

text: True

text: mouse gut metagenome

text: dna in freezer03.140

text: TRUE

text: colon content

text: colon content

text: mouse gut metagenome

text: nmol/well

text: male


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: batch

text: eppi

text: necropsy

text: Germany

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: animal-associated habitat

text: sebum material

text: host-associated

text: spf

text: False

text: Germany:Duesseldorf

text: Germany

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: weeks

text: UBERON:skin

text: UBERON:skin of external ear

text: UBERON:sebum

text: mouse

text: grams

text: LANUV

text: adult

text: True

text: mouse skin metagenome

characteristic: organism

text: dna in freezer03.140

text: TRUE

text: skin

text: skin of external ear

text: mouse skin metagenome

text: nmol/well

text: male

text: Skin screening

characteristic: title


text: UCSDMI

text: public

text: eppi

text: necropsy

text: Germany

characteristic: country

text: not provided

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: animal-associated habitat

text: intestine environment

text: host-associated

text: spf

characteristic: facility

text: False

characteristic: generation

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:colon

text: mouse

text: grams

text: LANUV

characteristic: latitude

text: adult

characteristic: longitude

text: False

text: mouse gut metagenome

text: dna in freezer03.140

text: TRUE

text: colon content

text: colon content

text: mouse gut metagenome

text: nmol/well

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: eppi

text: necropsy

text: Germany

text: not provided

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: animal-associated habitat

text: sebum material

text: host-associated

text: spf

text: False

text: Germany:Duesseldorf

text: Germany

text: Mus musculus

text: weeks

text: UBERON:skin

text: UBERON:skin of external ear

text: UBERON:sebum

text: mouse

text: grams

text: LANUV

text: adult

text: False

text: mouse skin metagenome

text: dna in freezer03.140

text: TRUE

text: skin

text: skin of external ear

text: mouse skin metagenome

text: nmol/well

text: male

text: Skin screening


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: batch

text: eppi

text: necropsy

text: Germany

text: not provided

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: animal-associated habitat

text: sebum material

text: host-associated

text: spf

text: False

text: Germany:Duesseldorf

text: Germany

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: weeks

text: UBERON:skin

text: UBERON:skin of external ear

text: UBERON:sebum

text: mouse

text: grams

text: LANUV

text: adult

text: False

text: mouse skin metagenome

characteristic: organism

text: dna in freezer03.140

text: TRUE

text: skin

text: skin of external ear

text: mouse skin metagenome

text: nmol/well

text: male

characteristic: title

text: Skin screening