text: adult gut microbiota after 0 h of in vitro batch fermentation of P22-B

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome


status: PUBLIC

tag: attribute

characteristic: Description

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

characteristic: Submitter Id

characteristic: collection date

text: digesta

characteristic: description

text: Netherlands

text: human gut metagenome

characteristic: organism

characteristic: project name

text: human gut metagenome

text: fermented starch using pooled adult faecal inoculum

characteristic: title


text: adult gut microbiota after 24 h of in vitro batch fermentation of P22-B

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P22-B

characteristic: Description

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P22-B (without inoculum)

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of N18-A

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of N18-A

characteristic: ENA-LAST-UPDATE

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of N18-A

characteristic: External Id

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of N18-A (without inoculum)

characteristic: INSDC center name

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of N18-B

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of N18-B

characteristic: INSDC last update

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of N18-B

text: public

characteristic: INSDC status

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of N18-B (without inoculum)

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of P40-B

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of P40-B

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P40-B

text: public

text: digesta

characteristic: description

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P40-B (without inoculum)

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of N32-B (study 2020)

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: fermented starch using pooled adult faecal inoculum


text: adult gut microbiota after 24 h of in vitro batch fermentation of N32-B (study 2020)

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome

characteristic: title


text: adult gut microbiota after 48 h of in vitro batch fermentation of N32-B (study 2020)

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of N32-B (without inoculum) (study 2020)

characteristic: Description

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of N32-B (study 2021)

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of N32-B (study 2021)

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of N32-B (study 2021)

characteristic: ENA-LAST-UPDATE

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of N32-B (without inoculum) (study 2021)

characteristic: External Id

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of P53-B

characteristic: INSDC center name

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of P53-B

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P53-B

characteristic: INSDC last update

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P53-B (without inoculum)

text: public

characteristic: INSDC status

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of N76-B

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of N76-B

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of N76-B

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of N76-B (without inoculum)

text: public

text: digesta

characteristic: description

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of SPS

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: fermented starch using pooled adult faecal inoculum


text: adult gut microbiota after 24 h of in vitro batch fermentation of SPS

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: project name

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of SPS

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome

characteristic: title


text: microbiota after 48 h incubation of SPS (without inoculum)

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of medium

characteristic: Description

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of medium

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of medium

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: control

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: control


characteristic: External Id

text: public

text: no template

text: negative control

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: negative control


characteristic: INSDC center name

text: public

text: DNA buffer control

text: negative control

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: negative control


text: adult gut microbiota after 0 h of in vitro batch fermentation of P21-A_pd

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of P21-A_pd

characteristic: INSDC last update

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P21-A_pd

text: public

characteristic: INSDC status

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P21-A_pd (without inoculum)

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of P53-B_pd

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of P53-B_pd

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P53-B_pd

text: public

text: digesta

characteristic: description

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P53-B_pd (without inoculum)

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of P22-B_pd

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: project name

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of P22-B_pd

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: fermented starch using pooled adult faecal inoculum

characteristic: title


text: adult gut microbiota after 48 h of in vitro batch fermentation of P22-B_pd

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P22-B_pd (without inoculum)

characteristic: Description

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of P40-B_pd

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of P40-B_pd

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P40-B_pd

characteristic: ENA-LAST-UPDATE

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P40-B_pd (without inoculum)

characteristic: External Id

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of medium

characteristic: INSDC center name

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of medium

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of medium

characteristic: INSDC last update

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of SPS

text: public

characteristic: INSDC status

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of SPS

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of SPS

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of SPS (without inoculum)

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


water

text: public

text: water

text: water

text: negative control

characteristic: description

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: negative control


text: public

text: DNA buffer control

text: negative control

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: negative control


text: public

text: control

text: Netherlands

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: control


E-MTAB-13312:Sample 1

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 1

tag: Namespace:European INstittute of Oncology.

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

characteristic: common name

text: Protocols: To perform RNA sequencing analysis, epithelial cells from Gut-on-Chip devices (n≥3 for each condition) were collected, at day 9 post treatment, flushing trypsin-EDTA solution (Euroclone) in the channels and incubating the device for 10-20 minutes at 37°C. Collected pellets were centrifuged, resuspended in 350 ml of freezing solution (40 mM Dithiothreitol DTT solution - Merck, in RLT buffer - Qiagen) and stored at -80°C until further processing Base calling was performed in real time during the Novaseq runs by Real-Time Analysis (RTA, Illumina) software RNA was extracted from frozen samples by using the RNeasy Mini Kit (Qiagen cat. no. 74106) and on-column digestion DNA was performed using the RNAse-Free DNase Set (Qiagen cat. no. 79254) following manufacturer instructions. RNA was eluted in 50 ml of RNAse-Free water. Sample quality and quantity were checked by Bioanalyzer and Qubit, respectively. Total RNA was depleted of ribosomal RNA with the Ribo-Zero™ rRNA Removal Kit. Efficiency of ribosomal RNA removal was checked with Bioanalyzer 2100. RNAseq libraries were prepared with the Illumina TruSeq Stranded Total RNA kit following the manufacturer’s protocol. Briefly, after the fragmentation of RNA, cDNA was synthesized, end-repaired and 3’-end-adenylated. Following adapter ligation, libraries were amplified by PCR. Amplified libraries were checked on Bioanalyzer 2100 and quantified with PicoGreen reagent.

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: intestine

characteristic: organism part

text: Homo sapiens

characteristic: stimulus

text: Sample 1

characteristic: title


E-MTAB-13312:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European INstittute of Oncology.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13312:Sample 15

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 15


E-MTAB-13312:Sample 16

text: European INstittute of Oncology.

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13312:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 16


E-MTAB-13312:Sample 2

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 2

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: intestine

characteristic: organism part

text: Homo sapiens

text: Sample 2


E-MTAB-13312:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 8

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

characteristic: stimulus

text: Sample 8

characteristic: title


E-MTAB-13312:Sample 9

text: European INstittute of Oncology.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13312:Sample 9

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 9


E-MTAB-13312:Sample 10

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: intestine

text: Homo sapiens

text: fecal material from patient with melanoma responding or non-responding to chemotherapy

text: Sample 10


E-MTAB-13312:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 11

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: intestine

characteristic: organism part

text: Homo sapiens

text: Sample 11


E-MTAB-13312:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European INstittute of Oncology.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13312:Sample 12

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

characteristic: stimulus

text: Sample 12

characteristic: title


E-MTAB-13312:Sample 13

text: European INstittute of Oncology.

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13312:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 13


E-MTAB-13312:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 14

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 14


E-MTAB-13312:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 17

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: intestine

characteristic: organism part

text: Homo sapiens

text: Sample 17


E-MTAB-13312:Sample 18

text: European INstittute of Oncology.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13312:Sample 18

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

characteristic: stimulus

text: Sample 18

characteristic: title


E-MTAB-13312:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European INstittute of Oncology.

text: public

characteristic: SRA accession

text: E-MTAB-13312:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 19


E-MTAB-13312:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 20

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 20


E-MTAB-13312:Sample 21

text: European INstittute of Oncology.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13312:Sample 21

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: intestine

characteristic: organism part

text: Homo sapiens

text: Sample 21


E-MTAB-13312:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European INstittute of Oncology.

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13312:Sample 22

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

characteristic: stimulus

text: Sample 22

characteristic: title


E-MTAB-13312:Sample 23

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European INstittute of Oncology.

text: public

characteristic: SRA accession

text: E-MTAB-13312:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 23


E-MTAB-13312:Sample 3

text: European INstittute of Oncology.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13312:Sample 3

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 3


E-MTAB-13312:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 4

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: intestine

characteristic: organism part

text: Homo sapiens

text: Sample 4


E-MTAB-13312:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European INstittute of Oncology.

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13312:Sample 5

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

characteristic: stimulus

text: Sample 5

characteristic: title


E-MTAB-13312:Sample 6

text: European INstittute of Oncology.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13312:Sample 6

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

text: human

text: adult

text: melanoma

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 6


E-MTAB-13312:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European INstittute of Oncology.

text: public

text: E-MTAB-13312:Sample 7

text: ArrayExpress

text: epithelial cell

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: melanoma

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: intestine

text: Homo sapiens

text: Sample 7


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Finnish Food Authority

text: public

tag: Namespace:Finnish Food Authority

text: Taylorella equigenitalis

text: Finland

text: not applicable

characteristic: host health state

text: Equus caballus

characteristic: host scientific name

characteristic: isolate

text: horse

text: Taylorella equigenitalis

text: Taylorella equigenitalis

text: Taylorella equigenitalis


text: Oxford Brookes University

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Oxford Brookes University

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with no treatment, Rep1

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells

characteristic: title


text: Oxford Brookes University

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with 0.5mM H2O2 treatment, Rep1

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with 2mM H2O2 treatment, Rep1

text: not collected

characteristic: geographic location (country and/or sea)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

characteristic: collection date

text: fruit fly

characteristic: common name

text: S2R+ cells with no treatment, Rep2

characteristic: description

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with 0.5mM H2O2 treatment, Rep2

text: not collected

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Whole Cells


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with 2mM H2O2 treatment, Rep2

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with no treatment, Rep1

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with 0.5mM H2O2 treatment, Rep1

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with 2mM H2O2 treatment, Rep1

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with no treatment, Rep2

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with 0.5mM H2O2 treatment, Rep2

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with 2mM H2O2 treatment, Rep2

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with no treatment, Rep3

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with 0.5mM H2O2 treatment, Rep3

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: S2R+ cells with 2mM H2O2 treatment, Rep3

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole Cells


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with no treatment, Rep3

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with 0.5mM H2O2 treatment, Rep3

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: Oxford Brookes University

text: public

text: S2R+ cells

text: Elizabeth Dellar

text: fruit fly

text: EVs of S2R+ cells with 2mM H2O2 treatment, Rep3

text: not collected

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Extracellular Vesicles


text: ROBERT KOCH INSTITUT

text: public

tag: Namespace:ROBERT KOCH INSTITUT

text: isolate obtained from a human listeriosis case in Germany

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IVb

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


text: ROBERT KOCH INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Germany

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIb

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ROBERT KOCH INSTITUT

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH INSTITUT

text: public

characteristic: collection date

characteristic: description

text: Germany

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IVb var.

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes


text: ROBERT KOCH INSTITUT

text: public

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: IIc

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes


text: ROBERT KOCH INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Germany

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IVa

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


characteristic: ENA-CHECKLIST

text: ROBERT KOCH INSTITUT

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Germany

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Ivb

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes

characteristic: title


text: Pooled fecal sample from 8 3-week-old, pre-weaning, piglets

characteristic: Description

characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: feces

text: Netherlands

characteristic: geographic location (country and/or sea)

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome

text: pooled feces from pre-weaning piglets


text: pre-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of P14-A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: digesta

characteristic: description

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of P14-A

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

characteristic: organism

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of P14-A

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of P14-A (without pre-weaning piglet inoculum)

characteristic: INSDC last update

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of N18-B

text: public

characteristic: INSDC status

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of N18-B

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

characteristic: title


text: pre-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of N18-B

characteristic: Description

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of N18-B (without pre-weaning piglet inoculum)

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of SPS

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of SPS

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of SPS

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of SPS (without pre-weaning piglet inoculum)

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of N18-A

characteristic: ENA-LAST-UPDATE

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of N18-A

characteristic: External Id

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of N18-A

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of N18-A (without pre-weaning piglet inoculum)

text: public

text: digesta

characteristic: description

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of medium

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

characteristic: INSDC center name

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of medium

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: pre-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of medium

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

characteristic: organism

text: pig gut metagenome


characteristic: ENA-CHECKLIST

text: public

text: no template

text: negative control

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

text: negative control


characteristic: INSDC last update

text: public

text: control

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

text: control


text: public

characteristic: INSDC status

text: DNA buffer control

text: negative control

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

text: negative control


text: Pooled fecal sample from 8 3-week-old, pre-weaning, piglets

text: public

text: Pooled fecal sample from 9 7-week-old, post-weaning, piglets

text: feces

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

text: pooled feces from post-weaning piglets

characteristic: title


text: post-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of N18-A

characteristic: Description

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of N18-A

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of N18-A

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of N18-A (without post-weaning piglet inoculum)

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of N18-B

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of N18-B

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of N18-B

characteristic: ENA-LAST-UPDATE

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of N18-B (without post-weaning piglet inoculum)

characteristic: External Id

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of P14-A

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of P14-A

text: public

text: digesta

characteristic: description

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of P14-A

characteristic: INSDC center name

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of P14-A (without post-weaning piglet inoculum)

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of SPS

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

characteristic: organism

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of SPS

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of SPS

characteristic: INSDC last update

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of SPS (without post-weaning piglet inoculum)

text: public

characteristic: INSDC status

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of N32-B

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

characteristic: title


text: post-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of N32-B

characteristic: Description

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of N32-B

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: microbiota after 48 h of incubation of N32-B (without post-weaning piglet inoculum)

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 0 h of in vitro batch fermentation of medium

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 24 h of in vitro batch fermentation of medium

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: pig gut metagenome

text: pig gut metagenome


text: post-weaning piglet gut microbiota after 48 h of in vitro batch fermentation of medium

text: public

text: digesta

text: Netherlands

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: no template

text: negative control

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

text: negative control


characteristic: External Id

text: public

text: control

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

text: control


text: public

text: DNA buffer control

characteristic: collection date

text: negative control

text: Netherlands

text: pig gut metagenome

text: pig gut metagenome

text: negative control


text: public

tag: Namespace:Birla Institute of Technology and Sciences, Pilani- Hyderabad Campus

text: ArrayExpress

characteristic: broker name

text: neuron

text: not collected

text: house mouse

characteristic: common name

text: Protocols: ESCs were differentiated into embryoid bodies in non adherent dishes with ESC medium without LIF and then in neural stem cell media (Knockout DMEM/F12: ThermoFisher, Cat. no. 12660012 with 1X Antibiotic/Antimycotic: HiMedia, Cat. no. A002A; 20ng/ml of basic fibroblast growth factor (bFGF): ThermoFisher, Cat. no. PHG0261; 20 ng/ml epidermal growth factor (EGF): ThermoFisher, Cat. no. PHG0315; 2% StemProTM Neural Supplement: ThermoFisher, Cat. no. A1050801; 6 units/ml Heparin Solution: STEMCELL Technologies, Cat. no. 07980; 200 mM Ascorbic acid: Merck, Cat. no. A8960 and 1X Glutamax) for a week with media changes on alternate days. One day prior to differentiation, adherent tissue culture dishes were coated with 20 µg/ml laminin (ThermoFisher, Cat. no. 23017015) in DMEM high glucose medium (HiMedia, Cat. no. AL007A) with 1X Antibiotic/Antimycotic. The resultant neurospheres were plated in the laminin coated dishes in presence of NDiff-227 (Takara Bio, Cat. no. Y40002), 1X CultureOne® Supplement (ThermoFisher, Cat. no. A3320201) and 1X Antibiotic/Antimycotic media to induce neuronal differentiation. Half of the differentiation media were replenished every alternate day for a total of 10 days. At the end of 10 days, well-differentiated neurons were obtained. The respective cell types were washed with 1X PBS and standard volume of RLT with BME was added added and scrapped to obtain the cell lysate which was then stored at -20 degree celcius till further use. Total RNA was extracted from ESC and neuron samples using Qiagen AllPrep DNA/RNA Kit according to standard instructions. RNA sequencing libraries were prepared with Illumina-compatible NEBNext® Ultra™ II Directional RNA Library Prep Kit (New England BioLabs, MA, USA) at Genotypic Technology Pvt. Ltd., Bangalore, India. 500 ng of total RNA was taken for mRNA isolation, fragmentation and priming. Fragmented and primed mRNA was further subjected to first strand synthesis followed by second strand synthesis. The double stranded cDNA was purified using NEBNext sample purification beads. Purified cDNA was end-repaired, adenylated and ligated to Illumina adapters as per NEBNext® Ultra™ II Directional RNA Library Prep protocol followed by second strand excision using USER enzyme at 37 ˚C for 15mins. Adapter ligated cDNA was purified using NEBNext beads and was subjected to 11 cycles for Indexing-(98˚C for 30 sec, cycling (98˚C for 10sec, 65˚C for 75sec) and 65˚C for 5min) and enrich the adapter-ligated fragments. Final PCR products (sequencing library) were purified with NEBNext beads, followed by library quality control check. Illumina-compatible sequencing library were quantified by Qubit fluorometer (Thermo Fisher Scientific, MA, USA) and fragment size distribution was analyzed on Agilent 2200 TapeStation.

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Birla Institute of Technology and Sciences, Pilani- Hyderabad Campus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: neuron

text: not collected

text: house mouse

text: embryo

text: normal

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inner cell mass

text: embryonic stem cell

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neuron

text: not collected

characteristic: collection date

text: house mouse

text: embryo

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: inner cell mass

text: embryonic stem cell

text: Mus musculus


text: public

text: ArrayExpress

text: embryonic stem cell

text: not collected

text: house mouse

characteristic: common name

text: Protocols: ESCs (mESCs) were grown in ESC medium (Knockout DMEM/F12: ThermoFisher, Cat. no. 12660012; 15% ESC-grade fetal bovine serum: HiMedia, Cat. no. RM10435; 1X Glutamax: ThermoFisher, Cat. no. 35050061; 1X Antibiotic/Antimycotic: HiMedia, Cat. no. A002A; 1X Non-Essential Amino Acids: ThermoFisher, Cat. no. 11140050, 1X β-Mercaptoethanol: ThermoFisher, Cat. no. 21985023 and 1X Leukemia Inhibitory Factor: a gift from Dr. Chandrasekhar’s lab, CCMB-Hyderabad). The ESCs were plated at a density of 50,000 cells/cm2 in a tissue culture treated dish coated with 0.1% sterile gelatin (Sigma, Cat. no. G1890). After reaching confluence, the ESCs were treated with 1X Trypsin-EDTA solution (HiMedia, Cat. no. TCL034) for further passaging. The respective cell types were washed with 1X PBS and standard volume of RLT with BME was added added and scrapped to obtain the cell lysate which was then stored at -20 degree celcius till further use. Total RNA was extracted from ESC and neuron samples using Qiagen AllPrep DNA/RNA Kit according to standard instructions. RNA sequencing libraries were prepared with Illumina-compatible NEBNext® Ultra™ II Directional RNA Library Prep Kit (New England BioLabs, MA, USA) at Genotypic Technology Pvt. Ltd., Bangalore, India. 500 ng of total RNA was taken for mRNA isolation, fragmentation and priming. Fragmented and primed mRNA was further subjected to first strand synthesis followed by second strand synthesis. The double stranded cDNA was purified using NEBNext sample purification beads. Purified cDNA was end-repaired, adenylated and ligated to Illumina adapters as per NEBNext® Ultra™ II Directional RNA Library Prep protocol followed by second strand excision using USER enzyme at 37 ˚C for 15mins. Adapter ligated cDNA was purified using NEBNext beads and was subjected to 11 cycles for Indexing-(98˚C for 30 sec, cycling (98˚C for 10sec, 65˚C for 75sec) and 65˚C for 5min) and enrich the adapter-ligated fragments. Final PCR products (sequencing library) were purified with NEBNext beads, followed by library quality control check. Illumina-compatible sequencing library were quantified by Qubit fluorometer (Thermo Fisher Scientific, MA, USA) and fragment size distribution was analyzed on Agilent 2200 TapeStation.

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: embryonic stem cell

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: embryonic stem cell

text: not collected

text: house mouse

text: embryo

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: inner cell mass

text: embryonic stem cell

characteristic: progenitor cell type

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite Grenoble Alpes

text: public

characteristic: SRA accession

tag: Namespace:Universite Grenoble Alpes

characteristic: Submitter Id

text: violet copper

text: Leg

text: France

text: Helleia helle

characteristic: organism

text: Helleia helle

text: Peatland populations

characteristic: title


text: public

tag: Namespace:The Hebrew University of Jerusalem, Israel

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Protocols: SGH10 bacteria were grown under DMEM (Dulbecco's Modified Eagle Medium) and LB(Lysogeny broth). Bacteria were harvested by centrifugation. The bacterial pellet was resuspended in TE buffer, mixed with lysosyme (SigmaAldrich) in a final concentration of 0.9 mg/ml, and immediately frozen in liquid nitrogen. The frozen pellet was subjected to two cycles of thaw and freeze at 37°C and in liquid nitrogen, respectively, and RNA was extracted using Tri-Reagent (Sigma-Aldrich) RNAtag-seq with mudifications detailed in Melamed et al, Nature Protocols 2018

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: DMEM media

characteristic: growth condition

text: exponential

characteristic: growth phase

text: not applicable

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: SGH10 hfq-flag

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Hebrew University of Jerusalem, Israel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: not collected

text: not collected

text: LB media

text: exponential

text: not applicable

characteristic: isolate

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: SGH10 hfq-flag


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: not collected

text: DMEM media

text: exponential

text: not applicable

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: SGH10 hfq-flag


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: not collected

text: DMEM media

text: exponential

text: not applicable

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

characteristic: description

text: not collected

characteristic: geographic location (country and/or sea)

text: LB media

text: exponential

text: not applicable

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: not collected

text: Protocols: Bacteria were grown in LB (Luria Bertani) medium and in DMEM (Dulbecco's Modified Eagle Medium) to exponential phase and cells were harvested at OD600 = 0.5. Cells were peleted by centrifugation, resuspended in PBS and subjected to UV crosslinking. Then bacteria were re-collected by centrifugation and flash frozen in liquid nitrogen Following mechanical lysis of the cells, Hfq with its bound RNAs was coimmunoprecipitated using anti-Flag antibody. Exposed regions of the RNAs were trimmed by RNases, the 50 and 30 ends of the RNAs were treated with T4 PNK, neighboring RNAs were ligated, the Hfq protein was digested, and RNA was then isolated using TRI-reagent RNAtag-seq with mudifications detailed in Melamed et al, Nature Protocols 2018

text: not collected

text: DMEM media

characteristic: growth condition

text: exponential

characteristic: growth phase

text: not applicable

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: SGH10 hfq-flag

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: not collected

text: not collected

text: LB media

text: exponential

text: not applicable

characteristic: isolate

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: SGH10 hfq-flag


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: not collected

text: DMEM media

text: exponential

text: not applicable

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: not collected

text: LB media

text: exponential

text: not applicable

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: not provided

characteristic: collection date

text: African malaria mosquito

characteristic: common name

text: not provided

characteristic: geographic location (country and/or sea)

text: Anopheles gambiae

text: Anopheles gambiae


characteristic: ENA-CHECKLIST

text: ETH Zurich Plant Pathology

text: public

tag: Namespace:ETH Zurich Plant Pathology

text: Cercospora beticola isolated from Sugar beet

characteristic: description

text: Switzerland

text: Cercospora beticola

text: Cercospora beticola


characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich Plant Pathology

characteristic: INSDC center name

text: public

text: Germany

text: Cercospora beticola

text: Cercospora beticola


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

tag: Namespace:Floto Lab University of Cambridge

text: USA

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: cystic fibrosis

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Mexico

text: diseased

text: homo sapiens

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Romania

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: Israel

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: USA

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: Philippines

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Philippines

text: diseased

characteristic: host health state

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Greece

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: Greece

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Greece

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: USA

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Venezuela

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: Colombia

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Colombia

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: Colombia

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Italy

text: diseased

characteristic: host health state

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Italy

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: USA

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Italy

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: India

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: India

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: India

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: France

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: France

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: France

text: diseased

characteristic: host health state

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Brazil

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: Brazil

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Germany

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: USA

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: USA

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: Argentina

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Argentina

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: Argentina

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: China

text: diseased

characteristic: host health state

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: China

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: China

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: USA

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Brazil

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Spain

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: India

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: India

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Spain

text: diseased

characteristic: host health state

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Croatia

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: Croatia

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Croatia

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: USA

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: France

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Germany

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: India

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Argentina

text: diseased

characteristic: host health state

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Germany

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: China

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Brazil

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Brazil

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: rectal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Germany

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: France

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Colombia

text: diseased

characteristic: host health state

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: USA

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: China

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Argentina

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Argentina

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Spain

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Croatia

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: USA

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Germany

text: diseased

characteristic: host health state

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Germany

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: China

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: France

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Spain

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Colombia

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: Colombia

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: USA

text: diseased

characteristic: host health state

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Germany

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: USA

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Argentina

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Colombia

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: France

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Spain

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: Germany

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Argentina

text: diseased

characteristic: host health state

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Argentina

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: China

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: France

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Brazil

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Brazil

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: Floto Lab University of Cambridge

text: public

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

text: Floto Lab University of Cambridge

text: public

characteristic: description

text: Croatia

text: diseased

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: Floto Lab University of Cambridge

characteristic: INSDC center name

text: public

text: Germany

text: diseased

text: homo sapiens

text: respiratory tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC first public

text: public

text: Germany

text: diseased

characteristic: host health state

text: homo sapiens

text: urinary tract

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

text: public

text: Venezuela

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Floto Lab University of Cambridge

text: public

text: India

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Floto Lab University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: China

text: diseased

text: homo sapiens

text: intra-abdominal infection

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA first public

text: CIPF

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: CD-veh

text: host organism

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: animal manure

characteristic: environment (material)

text: Spain

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: host body site

text: mouse

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

text: TAGCCTACGGGNGGCWGCAG, ACTGACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890

characteristic: project name

text: Mus musculus

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V3, V4

characteristic: target subfragment

text: Caecal DNA


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CIPF

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: HFHSD-P.fae

characteristic: description

text: host organism

text: microbial feature

text: animal manure

text: Spain

characteristic: geographic location (country and/or sea)

text: gut

text: mouse

text: host-associated

text: metagenome

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Illumina MiSeq

text: 16S rRNA

text: V3, V4

text: Caecal DNA

characteristic: title


text: CIPF

text: public

text: house mouse

characteristic: common name

text: HFHSD-veh

text: host organism

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: animal manure

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: host body site

text: mouse

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: pcr primers

characteristic: project name

text: Mus musculus

text: Illumina MiSeq

text: 16S rRNA

text: V3, V4

text: Caecal DNA


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Swedish University of Agricultural Sciences

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: garden pea

text: Roots of pea cultivar Linnea, non-infected control, 48 hours after inoculation

characteristic: description

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: Swedish University of Agricultural Sciences

text: public

text: not provided

text: garden pea

characteristic: common name

text: Seedling

text: not provided

characteristic: geographic location (country and/or sea)

text: Pisum sativum

characteristic: organism

text: Pisum sativum

text: Root

characteristic: title


text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, infected with A. euteiches strain 16, 48 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, infected with A. euteiches strain 51, 48 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, non-infected control, 48 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, infected with A. euteiches strain 16, 48 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, infected with A. euteiches strain 51, 48 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, non-infected control, 20 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, infected with A. euteiches strain 16, 20 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, infected with A. euteiches strain 51, 20 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, non-infected control, 20 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, infected with A. euteiches strain 16, 20 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, infected with A. euteiches strain 51, 20 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, non-infected control, 6 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, infected with A. euteiches strain 16, 6 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea line PI180693, infected with A. euteiches strain 51, 6 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, non-infected control, 6 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, infected with A. euteiches strain 16, 6 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


text: Swedish University of Agricultural Sciences

text: public

text: not provided

text: garden pea

text: Roots of pea cultivar Linnea, infected with A. euteiches strain 51, 6 hours after inoculation

text: Seedling

text: not provided

text: Pisum sativum

text: Pisum sativum

text: Root


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

tag: Namespace:Institut de recherche experimentale et clinique - IREC

text: Clinical isolate CTMA_1860

text: Democratic Republic of the Congo

text: Vibrio cholerae

text: Vibrio cholerae

text: Clinical isolate CTMA_1860


text: Institut de recherche experimentale et clinique - IREC

text: public

text: Clinical isolate CTMA_1859

text: Democratic Republic of the Congo

text: Vibrio cholerae

text: Vibrio cholerae

text: Clinical isolate CTMA_1859


text: HUG

text: public

text: environmental material

characteristic: broad-scale environmental context

text: CSF

text: cerebrospinal fluid material

characteristic: environmental medium

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: bodily fluid material

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: environmental material

text: NEC

text: cerebrospinal fluid material

text: Switzerland

text: bodily fluid material

text: metagenome

text: metagenome


text: HUG

text: public

characteristic: Submitter Id

text: environmental material

characteristic: collection date

text: CSF-cfDNA

characteristic: description

text: cerebrospinal fluid material

text: Switzerland

characteristic: geographic location (country and/or sea)

text: bodily fluid material

text: metagenome

characteristic: organism

text: metagenome