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tag: attribute

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characteristic: geographic location (latitude)

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characteristic: title


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characteristic: ENA-CHECKLIST

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characteristic: title


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characteristic: title


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text: ena-upload-cli

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characteristic: geographic location (latitude)

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characteristic: title


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text: ena-upload-cli

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characteristic: host subject id

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text: Martinetti Lucchini Gladys, Valeria Spina, Gloria Gaudio

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text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

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text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

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text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

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text: not provided

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text: not provided

text: not provided

text: United Kingdom

text: England

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text: not provided

characteristic: host common name

text: not provided

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text: Human

text: not provided

text: not provided

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text: not provided

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text: not provided

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text: not provided


characteristic: ENA-LAST-UPDATE

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text: public

characteristic: SRA accession

tag: Namespace:TECHNION - ISRAEL INSTITUTE OF TECHNOLOGY

characteristic: collection date

text: combinatorial sequences Proof Of Concept

characteristic: description

text: Israel

characteristic: geographic location (country and/or sea)

text: synthetic construct

text: synthetic construct


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF OXFORD

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characteristic: Submitter Id

text: University of Oxford

characteristic: collecting institution

text: Modernising Medical Microbiology

characteristic: collector name

text: United Kingdom

text: human

text: not collected

text: Homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

text: not collected

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: A

characteristic: influenza virus type

text: Influenza A virus

text: not applicable

characteristic: other pathogens test result

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text: Influenza A virus

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: USC

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characteristic: SRA accession

text: Near-shore coastal macroalgal habitat

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unit: yyyy-mm-dd

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text: Day 0 of decomposition experiment

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text: Flowthru seawater tanks

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

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text: Mixed assemblage of decomposing macroalgae

characteristic: local environmental context

text: Dictyopteris sp.

characteristic: organism

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text: Dictyopteris sp.

characteristic: title


characteristic: ENA-CHECKLIST

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text: USC

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text: Near-shore coastal macroalgal habitat

text: Day 8 of decomposition experiment

text: Flowthru seawater tanks

text: USA

characteristic: geographic location (country and/or sea)

text: Dictyopteris sp.

text: Dictyopteris sp.


characteristic: ENA-LAST-UPDATE

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text: USC

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text: public

characteristic: SRA accession

text: Near-shore coastal macroalgal habitat

text: Day 10 of decomposition experiment

text: Flowthru seawater tanks

text: USA

text: Dictyopteris sp.

text: Dictyopteris sp.


text: USC

text: public

text: Near-shore coastal macroalgal habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: Day 14 of decomposition experiment

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text: Flowthru seawater tanks

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text: USA

characteristic: geographic location (latitude)

text: Dictyopteris sp.

text: Dictyopteris sp.


text: USC

text: public

text: Near-shore coastal macroalgal habitat

text: Day 0 of decomposition experiment

text: Flowthru seawater tanks

text: USA

characteristic: geographic location (longitude)

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text: Codium fragile

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text: Codium fragile

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characteristic: ENA-CHECKLIST

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text: USC

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text: Near-shore coastal macroalgal habitat

text: Day 2 of decomposition experiment

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text: Codium fragile

text: Codium fragile


characteristic: ENA-LAST-UPDATE

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text: USC

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text: Near-shore coastal macroalgal habitat

text: Day 4 of decomposition experiment

text: Flowthru seawater tanks

text: USA

characteristic: geographic location (country and/or sea)

text: Codium fragile

text: Codium fragile


text: USC

text: public

characteristic: SRA accession

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characteristic: broad-scale environmental context

characteristic: collection date

text: Day 7 of decomposition experiment

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text: USA

text: Codium fragile

text: Codium fragile


text: USC

text: public

text: Near-shore coastal macroalgal habitat

text: Day 10 of decomposition experiment Rep 1

text: Flowthru seawater tanks

text: USA

characteristic: geographic location (latitude)

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text: Codium fragile

characteristic: organism

characteristic: project name

text: Codium fragile


characteristic: ENA-CHECKLIST

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text: USC

characteristic: INSDC last update

text: public

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text: Near-shore coastal macroalgal habitat

text: Day 10 of decomposition experiment Rep 2

text: Flowthru seawater tanks

text: USA

text: Codium fragile

text: Codium fragile

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: USC

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text: public

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text: Near-shore coastal macroalgal habitat

text: Day 13 of decomposition experiment

text: Flowthru seawater tanks

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text: Codium fragile

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text: USC

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characteristic: SRA accession

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characteristic: broad-scale environmental context

characteristic: collection date

text: Day 17 of decomposition experiment

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text: Flowthru seawater tanks

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characteristic: geographic location (country and/or sea)

text: Codium fragile

text: Codium fragile


text: USC

text: public

text: Near-shore coastal macroalgal habitat

text: Day 22 of decomposition experiment

text: Flowthru seawater tanks

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: Codium fragile

characteristic: organism

text: Codium fragile


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: USC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Near-shore coastal macroalgal habitat

text: Day 26 of decomposition experiment

text: Flowthru seawater tanks

text: USA

text: Codium fragile

characteristic: project name

text: Codium fragile


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: USC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Near-shore coastal macroalgal habitat

text: Day 32 of decomposition experiment

text: Flowthru seawater tanks

text: USA

text: Codium fragile

text: Codium fragile

characteristic: title


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text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Near-shore coastal macroalgal habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: Day 0 of decomposition experiment

characteristic: description

text: Flowthru seawater tanks

text: USA

text: Asparagopsis taxiformis

text: Asparagopsis taxiformis


text: USC

text: public

text: Near-shore coastal macroalgal habitat

text: Day 5 of decomposition experiment

text: Flowthru seawater tanks

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

characteristic: local environmental context

text: Asparagopsis taxiformis

text: Asparagopsis taxiformis


characteristic: ENA-CHECKLIST

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text: USC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Near-shore coastal macroalgal habitat

text: Day 12 of decomposition experiment

text: Flowthru seawater tanks

text: USA

text: Asparagopsis taxiformis

characteristic: organism

text: Asparagopsis taxiformis


characteristic: ENA-LAST-UPDATE

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text: USC

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text: public

text: Near-shore coastal macroalgal habitat

text: Day 15 of decomposition experiment

text: Flowthru seawater tanks

text: USA

text: Asparagopsis taxiformis

characteristic: project name

text: Asparagopsis taxiformis


text: USC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Near-shore coastal macroalgal habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: Day 18 of decomposition experiment

text: Flowthru seawater tanks

text: USA

text: Asparagopsis taxiformis

text: Asparagopsis taxiformis

characteristic: title


Malonate parental

text: KAIST

text: public

text: Malonate parental

text: E. coli MG1655 pMdcR_iM unevolved

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Escherichia coli str. K-12 substr. MG1655

text: E. coli MG1655 pMdcR_iM unevolved parental strain


Malonate ALE A1.I1

characteristic: ENA-CHECKLIST

text: KAIST

text: public

text: Malonate ALE A1.I1

text: E. coli MG1655 pMdcR_iM ALE A1.I1

text: USA

text: E. coli MG1655 Malonate ALE A1.I1


Malonate ALE A2.I1

characteristic: ENA-FIRST-PUBLIC

text: KAIST

text: public

text: Malonate ALE A2.I1

text: E. coli MG1655 pMdcR_iM ALE A2.I1

text: USA

text: E. coli MG1655 Malonate ALE A2.I1


Malonate ALE A3.I1

text: KAIST

characteristic: INSDC last update

text: public

text: Malonate ALE A3.I1

text: E. coli MG1655 pMdcR_iM ALE A3.I1

text: USA

text: E. coli MG1655 Malonate ALE A3.I1


Malonate ALE A3.I2

text: KAIST

text: public

characteristic: INSDC status

text: Malonate ALE A3.I2

text: E. coli MG1655 pMdcR_iM ALE A3.I2

text: USA

text: E. coli MG1655 Malonate ALE A3.I2


Malonate ALE A3.I3

text: KAIST

text: public

text: Malonate ALE A3.I3

text: E. coli MG1655 pMdcR_iM ALE A3.I3

text: USA

characteristic: organism

text: E. coli MG1655 Malonate ALE A3.I3


characteristic: ENA-LAST-UPDATE

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

tag: Namespace:Catholic University of Health and Allied Sciences

text: SeqAfrica

characteristic: broker name

text: Staphylococcus haemolyticus isolated from a patient presenting with UTI in Sengerema, Mwanza Region, Tanzania

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sengerema, Mwanza Region

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine

characteristic: isolation source host-associated

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

characteristic: scientific name

text: Staphylococcus haemolyticus

characteristic: strain

text: Staphylococcus haemolyticus ST30 strain FF08-2060717


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Catholic University of Health and Allied Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Sengerema, Mwanza Region

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus ST1 strain FF08-2060742

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

characteristic: broker name

text: Staphylococcus epidermidis isolated from a patient presenting with UTI in Sengerema, Mwanza Region, Tanzania

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sengerema, Mwanza Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus epidermidis

characteristic: organism

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis strain FF08-2060810


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

text: SeqAfrica

text: No

text: Tanzania

text: Sengerema, Mwanza Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine

characteristic: isolation source host-associated

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis

characteristic: scientific name

text: Staphylococcus epidermidis

characteristic: strain

text: Staphylococcus epidermidis strain FF08-2060838


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Sengerema, Mwanza Region

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus ST49 strain FF08-2060854

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

characteristic: broker name

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sengerema, Mwanza Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus haemolyticus

characteristic: organism

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus ST30 strain FF08-2060858


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

text: SeqAfrica

text: No

text: Tanzania

text: Sengerema, Mwanza Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine

characteristic: isolation source host-associated

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis

characteristic: scientific name

text: Staphylococcus epidermidis

characteristic: strain

text: Staphylococcus epidermidis strain FF08-2060864


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Sengerema, Mwanza Region

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus ST30 strain FF08-2060865

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

characteristic: broker name

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sengerema, Mwanza Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus haemolyticus

characteristic: organism

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus ST145 strain FF08-2060888


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

text: SeqAfrica

text: No

text: Tanzania

text: Sengerema, Mwanza Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine

characteristic: isolation source host-associated

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

characteristic: scientific name

text: Staphylococcus haemolyticus

characteristic: strain

text: Staphylococcus haemolyticus ST30 strain FF08-2060889


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Sengerema, Mwanza Region

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus ST66 strain FF08-2060980

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

characteristic: broker name

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sengerema, Mwanza Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus haemolyticus

characteristic: organism

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus ST144 strain FF08-2060759


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cantacuzino NIMMRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Cantacuzino NIMMRD

text: not provided

text: Romania

text: Bucharest

text: Homo sapiens

characteristic: host

text: Yes

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae


text: Cantacuzino NIMMRD

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Romania

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: pathotype

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Cantacuzino NIMMRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Romania

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: hemocultura

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


characteristic: ENA-LAST-UPDATE

text: Cantacuzino NIMMRD

text: public

text: not provided

text: not provided

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica


text: Cantacuzino NIMMRD

characteristic: INSDC last update

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Cantacuzino NIMMRD

text: public

characteristic: INSDC status

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Coeln


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

characteristic: host

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Bovismorbificans


text: Cantacuzino NIMMRD

text: public

characteristic: SRA accession

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Serovar Typhimurium


text: Cantacuzino NIMMRD

text: public

characteristic: Submitter Id

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Hadar


text: Cantacuzino NIMMRD

text: public

characteristic: collection date

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Livingstone


text: Cantacuzino NIMMRD

text: public

text: Romania

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Stanley


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Abony


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Paratyphi B


Batur Hot Spring

text: UNUD, VNSGU

text: public

text: Batur Hot Spring

tag: Namespace:UNUD, VNSGU

characteristic: broad-scale environmental context

characteristic: depth

text: Batur Hot Spring Water Samples

characteristic: description

text: Water

characteristic: environmental medium

text: Indonesia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Batur Hot Spring is located in Bali, Indonesia

characteristic: local environmental context

text: hot springs metagenome

text: Bacterial diversity assessment of Bali hot spring using metagenomic approach

characteristic: project name

text: hot springs metagenome

text: Batur Hot Spring Metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Cantacuzino NIMMRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Rissen

characteristic: serovar

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Cantacuzino NIMMRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Romania

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: GR B O:4,5,12


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: pathotype

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: External Id

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Paratyphi B ?


text: Cantacuzino NIMMRD

characteristic: INSDC center name

text: public

text: Romania

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Grup BO: 4,5,12:i;-.


text: Cantacuzino NIMMRD

characteristic: INSDC first public

text: public

text: Romania

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: urina

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar


text: Cantacuzino NIMMRD

text: public

text: not provided

text: Romania

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Livingstone

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Cantacuzino NIMMRD

text: public

text: Romania

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Cantacuzino NIMMRD

characteristic: INSDC last update

text: public

text: Romania

text: Homo sapiens

text: Yes

text: feces

text: Salmonella enterica

text: Salmonella enterica

text: Choleraesuis


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-14-12-2023-10:17:09:381-149754

tag: Namespace:University of Warsaw, Faculty of Biology, Department of Bacterial Genetics

text: Sludge before experiment

characteristic: description

text: Poland

text: sludge metagenome

text: sludge metagenome


text: University of Warsaw, Faculty of Biology, Department of Bacterial Genetics

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-12-2023-10:17:09:381-149755

characteristic: Submitter Id

text: Sludge + 10 mM SeO3 - T3

text: Poland

text: sludge metagenome

text: sludge metagenome


text: public

text: ena-SAMPLE-TAB-14-12-2023-10:17:09:381-149756

characteristic: collection date

text: Sludge + 10 mM SeO3 + 10 mM lactate - T3

text: Poland

characteristic: geographic location (country and/or sea)

text: sludge metagenome

text: sludge metagenome


text: public

text: ena-SAMPLE-TAB-14-12-2023-10:17:09:381-149757

text: Sludge + 10 mM SeO4 - T7

text: Poland

text: sludge metagenome

text: sludge metagenome


text: public

text: ena-SAMPLE-TAB-14-12-2023-10:17:09:381-149758

text: Sludge + 10 mM SeO3 - T7

text: Poland

text: sludge metagenome

text: sludge metagenome


text: public

text: ena-SAMPLE-TAB-14-12-2023-10:17:09:381-149759

text: Sludge + 10 mM SeO4 + 10 mM lactate - T7

text: Poland

text: sludge metagenome

text: sludge metagenome


text: public

text: ena-SAMPLE-TAB-14-12-2023-10:17:09:381-149760

text: Sludge + 10 mM SeO3 + 10 mM lactate - T7

text: Poland

text: sludge metagenome

text: sludge metagenome


text: public

tag: Namespace:IMSRL (Irish Meningitis and Sepsis Reference Laboratory

text: Haemophilus influenzae

text: Ireland

text: restricted access

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: HI

characteristic: isolate

text: human

text: Haemophilus influenzae

text: Haemophilus influenzae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IMSRL (Irish Meningitis and Sepsis Reference Laboratory

text: public

text: Haemophilus influenzae

text: Ireland

text: restricted access

text: homo sapiens

text: GBS

text: human

text: Haemophilus influenzae

text: Haemophilus influenzae


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Streptococcus pyogenes

text: Ireland

text: restricted access

text: homo sapiens

text: GAS

text: human

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes


characteristic: ENA-LAST-UPDATE

text: public

text: Streptococcus pneumoniae

text: Ireland

text: restricted access

text: homo sapiens

text: SPN

text: human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Streptococcus agalactiae

text: Ireland

text: restricted access

text: homo sapiens

text: GBS

text: human

text: Streptococcus agalactiae

text: Streptococcus agalactiae


text: public

characteristic: SRA accession

text: Neisseria meningitidis

characteristic: description

text: Ireland

text: restricted access

text: homo sapiens

text: NM

text: human

text: Neisseria meningitidis

text: Neisseria meningitidis


text: public

characteristic: Submitter Id

characteristic: collection date

text: Haemophilus influenzae

text: Ireland

text: restricted access

text: homo sapiens

text: HI

text: human

text: Haemophilus influenzae

text: Haemophilus influenzae


text: public

text: Neisseria polysaccharea

text: Ireland

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: host health state

text: homo sapiens

text: NP

text: human

text: Neisseria polysaccharea ATCC 43768

text: Neisseria polysaccharea ATCC 43768


text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176230

tag: Namespace:King Abdullah University of Science and Technology

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: Clinical sample

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: King Abdullah University of Science and Technology

text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176231

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: Clinical sample

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-FIRST-PUBLIC

text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176232

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: Clinical sample

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176233

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: Clinical sample

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176234

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: Clinical sample

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176235

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: Clinical sample

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176236

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: Clinical sample

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-14-12-2023-13:10:08:662-176237

text: not provided

text: Clinical sample isolation

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: Clinical sample

text: Staphylococcus aureus

text: Staphylococcus aureus


text: CIRAD

text: public

text: coffee

characteristic: common name

text: Nicaragua

text: Coffea arabica

text: Coffea arabica

characteristic: title


text: CIRAD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: coffee

text: Geisha Especial_1300m_Red_R1

text: Nicaragua

text: Coffea arabica

text: Coffea arabica


text: CIRAD

text: public

characteristic: SRA accession

text: coffee

text: Geisha Especial_1300m_Yel_R1

characteristic: description

text: Nicaragua

text: Coffea arabica

text: Coffea arabica


text: CIRAD

text: public

characteristic: Submitter Id

characteristic: collection date

text: coffee

text: Geisha Especial_1300m_Red_R2

text: Nicaragua

text: Coffea arabica

text: Coffea arabica


text: CIRAD

text: public

text: coffee

text: Geisha Especial_1300m_Yel_R2

text: Nicaragua

characteristic: geographic location (country and/or sea)

text: Coffea arabica

text: Coffea arabica


text: CIRAD

text: public

text: coffee

text: Geisha Especial_1300m_Red_R3

text: Nicaragua

text: Coffea arabica

text: Coffea arabica


text: CIRAD

text: public

text: coffee

text: Geisha Especial_1300m_Yel_R3

text: Nicaragua

text: Coffea arabica

text: Coffea arabica


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain


characteristic: Compound

text: 0.0 µM

characteristic: Concentration

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: 24 h

characteristic: Exposure time

characteristic: External Id

text: female

characteristic: Gender

text: University of Konstanz

characteristic: INSDC center name

text: public

tag: Namespace:University of Konstanz

text: single

characteristic: Treatment

text: once

characteristic: Treatment scheme

text: EU-ToxRisk DCC

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: 1,2 DCVG

text: 125.0 µM

characteristic: ENA-LAST-UPDATE

text: 24 h

text: female

text: University of Konstanz

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: single

text: once

text: EU-ToxRisk DCC

text: LUHMES

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: 1,2 DCVG

characteristic: Compound

text: 62.5 µM

characteristic: Concentration

text: 24 h

text: female

text: University of Konstanz

text: public

text: single

text: once

text: EU-ToxRisk DCC

characteristic: broker name

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: 2,2 DCVG

text: 125.0 µM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: 24 h

characteristic: Exposure time

text: female

text: University of Konstanz

text: public

text: single

text: once

text: EU-ToxRisk DCC

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: 2,2 DCVG

text: 62.5 µM

text: 24 h

characteristic: External Id

text: female

characteristic: Gender

text: University of Konstanz

characteristic: INSDC center name

text: public

text: single

text: once

text: EU-ToxRisk DCC

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: 1,2 DCVC

text: 62.5 µM

characteristic: ENA-LAST-UPDATE

text: 24 h

text: female

text: University of Konstanz

text: public

text: single

characteristic: Treatment

text: once

characteristic: Treatment scheme

text: EU-ToxRisk DCC

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: 1,2 DCVC

text: 29.8 µM

text: 24 h

text: female

text: University of Konstanz

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: single

text: once

text: EU-ToxRisk DCC

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: 1,2 DCVC

text: 9.3 µM

text: 24 h

text: female

text: University of Konstanz

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: single

text: once

text: EU-ToxRisk DCC

text: LUHMES

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: 2,2 DCVC

characteristic: Compound

text: 125.0 µM

characteristic: Concentration

text: 24 h

text: female

text: University of Konstanz

text: public

text: single

text: once

text: EU-ToxRisk DCC

text: LUHMES

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: 2,2 DCVC

text: 62.5 µM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: 24 h

text: female

text: University of Konstanz

text: public

text: single

text: once

text: EU-ToxRisk DCC

characteristic: broker name

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: CDDO

text: 125.0 µM

text: 24 h

characteristic: Exposure time

characteristic: External Id

text: female

characteristic: Gender

text: University of Konstanz

text: public

text: single

text: once

text: EU-ToxRisk DCC

text: LUHMES

text: human

text: Homo sapiens

text: Homo sapiens


text: Medium

text: 0.0 µM

characteristic: ENA-LAST-UPDATE

text: 24 h

text: female

text: University of Konstanz

characteristic: INSDC center name

text: public

characteristic: Treatment

text: once

text: EU-ToxRisk DCC

text: human immature dorsal root ganglia neurons

text: human

text: Homo sapiens

text: Homo sapiens


text: 1,2 DCVC

text: 125.0 µM

text: 24 h

text: female

text: University of Konstanz

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: once

characteristic: Treatment scheme

text: EU-ToxRisk DCC

text: human

text: Homo sapiens

text: Homo sapiens


text: 1,2 DCVC

text: 62.5 µM

text: 24 h

text: female

text: University of Konstanz

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: once

text: EU-ToxRisk DCC

text: human

text: Homo sapiens

text: Homo sapiens


text: 2,2 DCVC

characteristic: Compound

text: 125.0 µM

characteristic: Concentration

text: 24 h

text: female

text: University of Konstanz

text: public

text: once

text: EU-ToxRisk DCC

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: CDDO

text: 250.0 µM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: 24 h

text: female

text: University of Konstanz

text: public

text: once

text: EU-ToxRisk DCC

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: External Id

text: R&D institute, BioEleven Co., Ltd.

text: public

tag: Namespace:R&D institute, BioEleven Co., Ltd.

text: human

text: Fecal microbiota

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Sarcopenia in community-dwelling older adults is associated with the diversity and composition of the gut microbiota

characteristic: title


characteristic: ENA first public

text: National Institute of Public Health - National Institute of Hygiene

characteristic: INSDC center name

text: public

characteristic: collection date

text: bacterial isolate

text: Poland

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

characteristic: isolate

text: unknown

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: bacterial isolate

text: Poland

text: diseased

text: human

text: lower respiratory track

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

text: bacterial isolate

text: Poland

text: diseased

text: human

text: blood

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

text: bacterial isolate

text: Poland

text: diseased

text: human

text: cerebrospinal fluid

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

text: bacterial isolate

text: Poland

text: diseased

text: human

text: soft tissue

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

text: bacterial isolate

text: Poland

text: diseased

text: human

text: urinary tract

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

text: bacterial isolate

text: Poland

text: diseased

text: human

text: 25 Ab

text: unknown

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: public

text: bacterial isolate

text: Poland

text: diseased

text: human

text: gastrointestinal tract

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: LSHTM

text: public

text: yellow fever mosquito

characteristic: common name

text: Aedes aegypti IR amplicons

text: USA

text: Aedes aegypti

text: Aedes aegypti


characteristic: ENA-CHECKLIST

text: WSL

text: public

characteristic: broad-scale environmental context

unit: m

characteristic: depth

text: Soil sample

characteristic: elevation

text: soil

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: soil

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome

text: AMPLICON

characteristic: sequencing method

text: Soil sample


characteristic: ENA first public

text: UBT

characteristic: INSDC center name

text: public

text: temperate biome [ENVO_01001831]

characteristic: collection date

text: 16S rRNA V4 reads from bulk soil at an agricultural field in Bayreuth, Germany. This sample was taken at the flowering plant developmental stage and subjected to natural precipitation. Maize variety: Braunes Schindelmeiser.

characteristic: description

text: 354 m

text: bulk soil [ENVO_00005802]

text: ALZON (SKW Stickstoffwerke Piesteritz GmbH, Lutherstadt Wittenberg, Germany)

text: Germany

characteristic: geographic location (country and/or sea)

text: Bavaria, Upper Franconia, Bayreuth

text: Laudis Aspekt Pack (Bayer CropScience Deutschland GmbH, Monheim, Germany)

text: 75 d

text: maize

text: flowering

text: maize field [ENVO_01000348]

text: Extraction with water instead of sample and PCR blank control.

text: soil metagenome

characteristic: organism

text: initial denaturation:98degC_120s; denaturation:98degC_10s; annealing:55degC_30s; extension:72degC_30s; final extension:72degC_120s

text: 515f: 5'-GTGYCAGCMGCCGCGGTAA-3', 806RB: 5'-GGACTACNVGGGTWTCTAAT-3'

text: not applicable

text: Bacterial mock community of the following taxa: Bacillus subtilis (NCBI:txid1423), Chryseobacterium luteum, Clostridium roseum (NCBI:txid421531), Enterobacter mori (NCBI:txid539813), Franconibacter helveticus (NCBI:txid357240), Glycomyces tenuis (NCBI:txid58116), Pseudomonas fluorescens (NCBI:txid294), Pseudomonas putida (NCBI:txid303), Rhizobium endophyticum (NCBI:txid578290), Streptomyces acidiscabies (NCBI:txid42234), Variovorax guangxiensis (NCBI:txid1775474). Amplicons were generated individually for each taxon with the same conditions as for the other samples and pooled in equimolar manner after amplification.

text: Rhizo4Bio: RhizoTraits

text: natural precipitation

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA

text: prokaryotic microbiome in bulk soil

characteristic: title


characteristic: ENA-CHECKLIST

text: UBT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from roots (rhizoplane and endosphere) of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the flowering plant developmental stage and subjected to natural precipitation. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: root [PO_0009005]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 75 d

text: maize

text: flowering

text: maize field [ENVO_01000348]

text: root metagenome

text: Rhizo4Bio: RhizoTraits

text: natural precipitation

text: -80 degC

text: root metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA

text: prokaryotic microbiome in roots of Zea mays L.


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from the proximal rhizosphere of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the flowering plant developmental stage and subjected to natural precipitation. Maize variety: Braunes Schindelmeiser.

text: 354 m

characteristic: elevation

text: rhizosphere environment [ENVO_01000999]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 75 d

text: maize

text: flowering

text: maize field [ENVO_01000348]

text: soil metagenome

text: not applicable

text: Rhizo4Bio: RhizoTraits

text: natural precipitation

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA

text: prokaryotic microbiome in the proximal rhizosphere of Zea mays L.


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from bulk soil at an agricultural field in Bayreuth, Germany. This sample was taken at the grain filling plant developmental stage and subjected to natural precipitation. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: bulk soil [ENVO_00005802]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 96 d

text: maize

text: grain filling

text: maize field [ENVO_01000348]

text: soil metagenome

text: not applicable

text: Rhizo4Bio: RhizoTraits

text: natural precipitation

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA

text: prokaryotic microbiome in bulk soil


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from roots (rhizoplane and endosphere) of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the grain filling plant developmental stage and subjected to natural precipitation. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: root [PO_0009005]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 96 d

text: maize

text: grain filling

text: maize field [ENVO_01000348]

text: root metagenome

text: Rhizo4Bio: RhizoTraits

text: natural precipitation

text: -80 degC

text: root metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from the proximal rhizosphere of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the grain filling plant developmental stage and subjected to natural precipitation. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: rhizosphere environment [ENVO_01000999]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 96 d

text: maize

text: grain filling

text: maize field [ENVO_01000348]

text: soil metagenome

text: not applicable

text: Rhizo4Bio: RhizoTraits

text: natural precipitation

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from the distal rhizosphere of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the grain filling plant developmental stage and subjected to natural precipitation. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: rhizosphere environment [ENVO_01000999]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 96 d

text: maize

text: grain filling

text: maize field [ENVO_01000348]

text: soil metagenome

text: not applicable

text: Rhizo4Bio: RhizoTraits

text: natural precipitation

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA

text: prokaryotic microbiome in the distal rhizosphere of Zea mays L.


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from bulk soil at an agricultural field in Bayreuth, Germany. This sample was taken at the flowering plant developmental stage and subjected to natural precipitation reduced by 60%. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: bulk soil [ENVO_00005802]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 80 d

text: maize

text: flowering

text: maize field [ENVO_01000348]

text: soil metagenome

text: not applicable

text: Rhizo4Bio: RhizoTraits

text: natural precipitation reduced by 60%

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA

text: prokaryotic microbiome in bulk soil


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from roots (rhizoplane and endosphere) of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the flowering plant developmental stage and subjected to natural precipitation reduced by 60%. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: root [PO_0009005]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 80 d

text: maize

text: flowering

text: maize field [ENVO_01000348]

text: root metagenome

text: Rhizo4Bio: RhizoTraits

text: natural precipitation reduced by 60%

text: -80 degC

text: root metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from the proximal rhizosphere of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the flowering plant developmental stage and subjected to natural precipitation reduced by 60%. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: rhizosphere environment [ENVO_01000999]

text: ALZON (SKW Stickstoffwerke Piesteritz GmbH, Lutherstadt Wittenberg, Germany)

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 80 d

text: maize

text: flowering

text: maize field [ENVO_01000348]

text: soil metagenome

text: not applicable

text: Rhizo4Bio: RhizoTraits

text: natural precipitation reduced by 60%

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from bulk soil at an agricultural field in Bayreuth, Germany. This sample was taken at the grain filling plant developmental stage and subjected to natural precipitation reduced by 60%. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: bulk soil [ENVO_00005802]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: Laudis Aspekt Pack (Bayer CropScience Deutschland GmbH, Monheim, Germany)

text: 97 d

text: maize

text: grain filling

text: maize field [ENVO_01000348]

text: Extraction with water instead of sample and PCR blank control.

text: soil metagenome

text: not applicable

text: Rhizo4Bio: RhizoTraits

text: natural precipitation reduced by 60%

text: -80 degC

text: soil metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA

text: prokaryotic microbiome in bulk soil


text: UBT

text: public

text: temperate biome [ENVO_01001831]

text: 16S rRNA V4 reads from roots (rhizoplane and endosphere) of Zea mays L. grown at an agricultural field in Bayreuth, Germany. This sample was taken at the grain filling plant developmental stage and subjected to natural precipitation reduced by 60%. Maize variety: Braunes Schindelmeiser.

text: 354 m

text: root [PO_0009005]

text: Germany

text: Bavaria, Upper Franconia, Bayreuth

text: 97 d

text: maize

text: grain filling

text: maize field [ENVO_01000348]

text: root metagenome

text: initial denaturation:98degC_120s; denaturation:98degC_10s; annealing:55degC_30s; extension:72degC_30s; final extension:72degC_120s

text: 515f: 5'-GTGYCAGCMGCCGCGGTAA-3', 806RB: 5'-GGACTACNVGGGTWTCTAAT-3'

text: Bacterial mock community of the following taxa: Bacillus subtilis (NCBI:txid1423), Chryseobacterium luteum, Clostridium roseum (NCBI:txid421531), Enterobacter mori (NCBI:txid539813), Franconibacter helveticus (NCBI:txid357240), Glycomyces tenuis (NCBI:txid58116), Pseudomonas fluorescens (NCBI:txid294), Pseudomonas putida (NCBI:txid303), Rhizobium endophyticum (NCBI:txid578290), Streptomyces acidiscabies (NCBI:txid42234), Variovorax guangxiensis (NCBI:txid1775474). Amplicons were generated individually for each taxon with the same conditions as for the other samples and pooled in equimolar manner after amplification.

text: Rhizo4Bio: RhizoTraits

text: natural precipitation reduced by 60%

text: -80 degC

text: root metagenome

text: Illumina iSeq 100

text: variety:Braunes Schindelmeiser

text: 16S rRNA