characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: SRA accession

text: E-MTAB-13271:tsh-tio_MID-LA_DEL_Rep2_right

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

text: deletion

text: not collected

text: egg laying

characteristic: initial time point

text: not applicable

characteristic: isolate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: mixed

characteristic: sex

characteristic: strain


status: PUBLIC

tag: attribute

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13271:tsh-tio_MID-LA_SUB_Rep1_left

characteristic: Submitter Id

text: 3 to 18

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: fruit fly

characteristic: common name

text: Protocols: Wildtype flies were held in population cages at 25ºC. After three one-hour pre-lays, embryos were collected at the indicated time (please see age) after egg laying. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 1.8 % formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at room temperature for 15 minutes. The reaction was terminated with ice-cold 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. 0.5-1 g of frozen embryos were dounce-homogenized, 20 times with a loose pestle and 10 times with a tight pestle, in 10 ml of chilled HB buffer (15 mM Tris-HCl (pH 7.4), 0.34 M sucrose, 15 mM NaCl, 60 mM KCl, 0.2 mM EDTA and 0.2 mM EGTA) on ice. The lysate was filtered through 2 layers of Miracloth and spun at 3,500g for 10 min to pellet the nuclei. The nuclei were then washed in 10 ml of chilled HB buffer, spun at 3,500g for 10 min and resuspended in 3 ml of PBTB buffer (5% (wt/vol) BSA, 0.1% (vol/vol) Triton X-100 in PBS). The nuclei were dissociated by passing them ten times through a 20-G needle and then ten times through a 22-G needle using a 5-ml syringe, and filtered through a 20-µm Sefar Nitex membrane. The total number of nuclei was determined using a flow cytometer or cell counter. Four aliquots of 25 million nuclei were used for preparation of the 3C library for each sample. 3C samples and Capture-C libraries were prepared as previously described (Davies et al. 2016, Ghavi-Helm et al., 2019), using DpnII as restriction enzyme and performing the ligation step in nucleus. The template was then processed with the Roche Nimblegen SeqCap EZ Library SR system and a double capture strategy.

characteristic: description

text: normal

characteristic: disease

text: insertion

characteristic: genetic modification

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: egg laying

text: not applicable

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: SRA accession

text: E-MTAB-13271:tsh-tio_MID-LA_SUB_Rep1_right

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

text: insertion

text: not collected

text: egg laying

characteristic: initial time point

text: not applicable

characteristic: isolate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: mixed

characteristic: sex

characteristic: strain


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13271:tsh-tio_MID-LA_SUB_Rep2_left

characteristic: Submitter Id

text: 3 to 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: fruit fly

characteristic: common name

characteristic: description

text: normal

text: insertion

text: not collected

text: egg laying

text: not applicable

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: E-MTAB-13271:tsh-tio_MID-LA_SUB_Rep2_right

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

characteristic: disease

text: insertion

characteristic: genetic modification

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: egg laying

text: not applicable

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed

characteristic: title


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13271:tsh-tio_tio-LA_DEL_Rep1_left

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

text: deletion

text: not collected

text: egg laying

characteristic: initial time point

text: not applicable

characteristic: isolate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: mixed

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: E-MTAB-13271:tsh-tio_tio-LA_DEL_Rep1_right

characteristic: Submitter Id

text: 3 to 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: fruit fly

characteristic: common name

characteristic: description

text: normal

text: deletion

text: not collected

text: egg laying

text: not applicable

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13271:tsh-tio_tio-LA_DEL_Rep2_left

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

characteristic: disease

text: deletion

characteristic: genetic modification

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: egg laying

text: not applicable

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: SRA accession

text: E-MTAB-13271:tsh-tio_tio-LA_DEL_Rep2_right

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

text: deletion

text: not collected

text: egg laying

characteristic: initial time point

text: not applicable

characteristic: isolate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: mixed

characteristic: sex

characteristic: strain


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13271:tsh-tio_tio-TSS_DEL_Rep1_left

characteristic: Submitter Id

text: 3 to 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: fruit fly

characteristic: common name

characteristic: description

text: normal

text: deletion

text: w;tio-TSS-deletion

text: not collected

text: egg laying

text: not applicable

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: E-MTAB-13271:tsh-tio_tio-TSS_DEL_Rep1_right

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

characteristic: disease

text: deletion

characteristic: genetic modification

text: w;tio-TSS-deletion

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: egg laying

text: not applicable

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed

characteristic: title


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13271:tsh-tio_tio-TSS_DEL_Rep2_left

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

text: deletion

text: w;tio-TSS-deletion

text: not collected

text: egg laying

characteristic: initial time point

text: not applicable

characteristic: isolate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: mixed

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: E-MTAB-13271:tsh-tio_tio-TSS_DEL_Rep2_right

characteristic: Submitter Id

text: 3 to 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: fruit fly

characteristic: common name

characteristic: description

text: normal

text: deletion

text: w;tio-TSS-deletion

text: not collected

text: egg laying

text: not applicable

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 3 to 18

text: ArrayExpress

text: not collected

text: fruit fly

text: normal

characteristic: disease

text: transgenic

characteristic: genetic modification

text: w[1118]; PBac{y[+mDint2]=vas-Cas9}

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: egg laying

text: not applicable

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed

characteristic: title


Rhodococcus eryhropolis D4 on LD

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Milano-Bicocca

text: public

characteristic: SRA accession

text: Rhodococcus eryhropolis D4 on LD

tag: Namespace:University of Milano-Bicocca

text: Genome R. erythropolis D4 grown on LD

text: Italy

text: Rhodococcus erythropolis

text: Rhodococcus erythropolis


E-MTAB-13263:Sample 1

text: public

text: E-MTAB-13263:Sample 1

tag: Namespace:Department Ecotoxicogenomics, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Schmallenberg, Germany

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

text: Protocols: At 72 hpf, for each sample, all 15 zebrafish embryos were picked from the glass well and carefully transferred to a 1.5 ml low binding Eppendorf tube. Excessive liquid was removed and tubes were placed on ice to euthanize the embryos. For detailed information about embryonic incubation conditions and husbandry of adult broodstock please refer to the “Growth protocol”. For detailed information about exposure duration and conditions please refer to the “Treatment protocol”. Adult animal husbandry: All experiments were performed using zebrafish (Danio rerio) embryos of the wild-type strain AB. Adult fish were originally obtained from West Aquarium GmbH, Germany, and were kept in 150 l tanks under flow-through conditions at 26 ± 2 °C and a 12:12 light/dark cycle at the Fraunhofer Institute for molecular biology and applied ecology (IME), Schmallenberg, Germany. TetraMin® (Tetra Werke, Germany) was used as daily main feed, regularly supplemented with nauplii of Artemia salina. Fish were constantly bred for several generations without interbreeding between tanks, making the embryos deriving from different spawning groups (tanks) independent biological replicates. For egg collection, glass spawning trays equipped with whirled cords of green glass pearls to stimulate spawning and covered with wired mesh to prevent cannibalism were put into the tanks the day before tests were started (OECD, 2013). The morning after, eggs were collected from the trays using a sieve, rinsed with pre-tempered system water to remove remaining feces, gathered in glass jars filled with pre-tempered aerated system water and stored at a controlled temperature of 26 ± 1 °C until further use. Fish embryo incubation: Embryos were incubated at a controlled temperature of 26 ± 1°C and a 14:10 h light/dark cycle artificially created with tubular fluorescent lamps with the lights switched on at 8 am. Medium was refreshed at 24 hpf by renewing half its volume. For details on the treatment see “treatment protocol” Clobetasol propionate (21-Chlor-9-fluor-11β,17-dihydroxy-16β-methylpregna-1,4-dien-3,20-dion-17-propionat, purity ≥ 98 %, CAS no. 25122-46-7) and Imiquimod (1-(2-methylpropyl)-1H-imidazo[4,5-c]quinoline-4-amine, purity ≥ 95 %, CAS no. 9901-02-6) were purchased from BIOMOL GmbH, Hamburg, Germany. For IMQ, a stock solution in acetone with a nominal concentration of 0.1 mg/ml was prepared. For CP, a stock solution in dimethyl sulfoxide (DMSO) with a nominal concentration of 2.5 mM was prepared. To obtain a test solution with a nominal concentration of 4666 nM IMQ, 2242.5 µl of the IMQ stock solution was added to a glass bottle. To equalize the amount of added acetone amongst all solutions, equal volume of pure acetone without IMQ was added to glass bottles for all remaining test solutions. For all test solutions containing 250 nM CP, 20 µl of the CP stock solution was added to the glass bottles after complete evaporation of the acetone and filled with copper reduced tap water (in the following referred to as cu-red water) to a final volume of 200 ml. Test solutions without CP were prepared alike adding 20 µl DMSO without CP. All solutions were sonicated for 30 min at room temperature (Sonorex RK 100H, Bandelin, Germany). Final solutions were thus cu-red water with 0.01 % DMSO, 4666 nM IMQ in cu-red water with 0.01 % DMSO, 250 nM CP in cu-red water with 0.01 % DMSO and 4666 nM IMQ plus 250 nM CP in cu-red water with 0.01 % DMSO. Due to a mandatory dilution during the methodological procedure a nominal working concentration of 4000 nM was achieved for IMQ in these solutions. The test solutions were freshly prepared one day prior the start of the experiment and stored at room temperature in the dark. They were constantly aerated and used over the course of the 72 hours exposure experiment. The glass wells for the incubation of the embryos were pre-saturated with the respective test solution overnight and renewed at the beginning of the experiment. In order to minimize the differences between replicates and conditions in exposure durations, the selection of embryos was performed in two steps: at 2 hpf, approx. 50 embryos from spawning batches with a minimum fertilization rate ≥ 90 % were transferred to previously overnight saturated glass petri dishes (6 cm diameter) refilled with 7 ml of the corresponding test solutions for each replicate and condition. Embryos of the control and the IMQ condition were thus transferred to medium without any compound, embryos of the CP and combined CP+IMQ condition were transferred to medium supplemented with 250 nM CP. Once in solution, 15 healthy and fertilized embryos, indicated by a well-shaped blastodisc between the 128-cell and 1k-cell-stage of development were selected per replicate and condition for experiments. Embryos were incubated at a controlled temperature of 26 ± 1°C and a 14:10 h light/dark cycle artificially created with tubular fluorescent lamps with the lights switched on at 8 am. Medium was refreshed at 24 hpf by renewing half its volume. Embryos were inspected microscopically on a daily basis and at the end of the experiment using an OZL 451 stereomicroscope (KERN & Sohn, Germany) in order to monitor the occurrence of indicators of lethality as defined by the OECD FET test guideline, namely coagulation, lack of somite formation, lack of a heartbeat, non-detachment of the tail (OECD, 2013) as well as further indicators of malformations such as scoliosis, formation of edema or lack of pigmentation. At 47 hpf, embryos were manually dechorionated using two pointy forceps. At 48 hpf, the immune-challenge was started by transferring the embryos of the IMQ condition and the combined CP+IMQ condition to the respective test solution supplemented with IMQ. For this and in order to equalized the subsequent dilution of media between replicates and conditions, embryos were gathered in 1 ml of the aged medium and transferred with this volume into newly saturated glass dishes, filled with 6 ml of the corresponding fresh medium. Due to this dilution, a nominal working concentration of 4000 nM IMQ was achieved for the immune-challenge. Embryos of the control condition and the CP condition were handled alike but without changing the type of test solution. RNA was extracted using a NucleoSpin RNA/Protein kit (Macherey-Nagel, Düren, Germany). Briefly, frozen embryos were transferred to screw cap tubes filled with 350 µl kit specific lysis buffer (RP1 buffer) and Lysing Matrix D ceramic beads (MP Biomedicals, Irvine, USA) and homogenized using a FastPrep-24 (MP Biomedicals, Irvine, USA) device at 5 m/s for 1 min. RP1 buffer was freshly prepared with TCEP as reducing agent prior extraction. Further steps were performed following the manufacturer’s extraction protocol. As quality measures, purity and concentration of extracted RNA were determined using a NanoDrop 2000 device (Thermo Scientific, Waltham, USA) and RNA integrity numbers (RIN) were determined using a Bioanalyzer 2100 device (Agilent, Santa Clara, USA) with samples prepared using a RNA Pico 6000 kit (Agilent, Santa Clara, USA) following the manufacturer’s instructions. Only samples with a RIN > 9 were used for downstream analysis. Samples were stored at -80°C until they were send to the sequencing facility on dry ice. High quality RNA samples with RIN > 9 were selected for RNA-seq library preparation and sequencing, performed by Eurofins Genomics Germany GmbH, Ebersberg, Germany. Briefly, Poly-A containing protein coding mRNA molecules were purified from total RNA, randomly fragmentated and subjected to random-primed strand-specific cDNA library preparation using the TruSeq RNA library Prep Kit v2 (Illumina) following the manufacturer’s instructions.

text: embryo stage

characteristic: developmental stage

text: AB

text: not collected

text: not applicable

characteristic: isolate

unit: nanomolar

characteristic: nominal concentration in medium

text: Danio rerio

text: Danio rerio

text: whole organism

characteristic: organism part

characteristic: rin

text: Danio rerio

characteristic: sex

characteristic: stimulus

text: Wildtype AB

characteristic: strain

text: Sample 1


E-MTAB-13263:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department Ecotoxicogenomics, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Schmallenberg, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13263:Sample 10

text: ArrayExpress

text: not collected

text: zebrafish

characteristic: description

text: embryo stage

text: AB

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: 250 (CP) + 4000 (IMQ)

text: Danio rerio

characteristic: organism

text: Danio rerio

text: whole organism

text: Danio rerio

text: immunosuppression and immunostimulation

text: Wildtype AB

text: Sample 10

characteristic: title


E-MTAB-13263:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-13263:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: AB

text: not collected

text: not applicable

characteristic: isolate

text: 250 (CP) + 4000 (IMQ)

characteristic: nominal concentration in medium

text: Danio rerio

text: Danio rerio

text: whole organism

text: Danio rerio

text: immunosuppression and immunostimulation

text: Wildtype AB

text: Sample 11


E-MTAB-13263:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13263:Sample 12

text: ArrayExpress

text: not collected

text: zebrafish

text: embryo stage

text: AB

text: not collected

text: not applicable

text: 250 (CP) + 4000 (IMQ)

text: Danio rerio

text: Danio rerio

text: whole organism

characteristic: organism part

characteristic: rin

text: Danio rerio

characteristic: sex

text: immunosuppression and immunostimulation

characteristic: stimulus

text: Wildtype AB

characteristic: strain

text: Sample 12


E-MTAB-13263:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-13263:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: zebrafish

characteristic: description

text: embryo stage

text: AB

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: whole organism

text: Danio rerio

text: Wildtype AB

text: Sample 2

characteristic: title


E-MTAB-13263:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13263:Sample 3

text: ArrayExpress

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: AB

text: not collected

text: not applicable

characteristic: isolate

characteristic: nominal concentration in medium

text: Danio rerio

text: Danio rerio

text: whole organism

text: Danio rerio

text: Wildtype AB

text: Sample 3


E-MTAB-13263:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-13263:Sample 4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: zebrafish

text: embryo stage

text: AB

text: not collected

text: not applicable

text: Danio rerio

text: Danio rerio

text: whole organism

characteristic: organism part

characteristic: rin

text: Danio rerio

characteristic: sex

text: immunosuppression

characteristic: stimulus

text: Wildtype AB

characteristic: strain

text: Sample 4


E-MTAB-13263:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13263:Sample 5

text: ArrayExpress

text: not collected

text: zebrafish

characteristic: description

text: embryo stage

text: AB

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: whole organism

text: Danio rerio

text: immunosuppression

text: Wildtype AB

text: Sample 5

characteristic: title


E-MTAB-13263:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-13263:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: AB

text: not collected

text: not applicable

characteristic: isolate

characteristic: nominal concentration in medium

text: Danio rerio

text: Danio rerio

text: whole organism

text: Danio rerio

text: immunosuppression

text: Wildtype AB

text: Sample 6


E-MTAB-13263:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13263:Sample 7

text: ArrayExpress

text: not collected

text: zebrafish

text: embryo stage

text: AB

text: not collected

text: not applicable

text: Danio rerio

text: Danio rerio

text: whole organism

characteristic: organism part

characteristic: rin

text: Danio rerio

characteristic: sex

text: immunostimulation

characteristic: stimulus

text: Wildtype AB

characteristic: strain

text: Sample 7


E-MTAB-13263:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-13263:Sample 8

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: zebrafish

characteristic: description

text: embryo stage

text: AB

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: whole organism

text: Danio rerio

text: immunostimulation

text: Wildtype AB

text: Sample 8

characteristic: title


E-MTAB-13263:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13263:Sample 9

text: ArrayExpress

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: AB

text: not collected

text: not applicable

characteristic: isolate

characteristic: nominal concentration in medium

text: Danio rerio

text: Danio rerio

text: whole organism

text: Danio rerio

text: immunostimulation

text: Wildtype AB

text: Sample 9


Atlantic Highlands lakes

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Atlantic Highlands lakes

tag: Namespace:Centre for Structural and Functional Genomics

characteristic: Submitter Id

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Atlantic Highlands ecozone and is composed of 25 physical samples ERS2799879, ERS2799912, ERS2799913, ERS2799914, ERS2799916, ERS2799917, ERS2799918, ERS2799919, ERS2799920, ERS2799921, ERS2799922, ERS2799923, ERS2799924, ERS2799925, ERS2799926, ERS2799927, ERS2799928, ERS2799929, ERS2799930, ERS2799931, ERS2799932, ERS2799933, ERS2799934, ERS2799935, ERS2799936 (corresponding to lakes 07-033, 17-018, 17-027, 17-043, 17-054, 17-056, 17-058, 17-060, 17-061, 17-063, 17-065, 17-067, 17-072, 17-073, 17-074, 17-077, 17-086, 17-090, 17-091, 17-093, 17-098, 17-107, 17-112, 17-113, 17-116).

text: Yes

text: Canada

text: Atlantic Highlands ecozone

characteristic: geographic location (region and locality)

text: metagenome

characteristic: sample composed of

text: metagenome

text: LakePulse ecozone group sample


Atlantic Maritime lakes

characteristic: ENA-CHECKLIST

text: Centre for Structural and Functional Genomics

text: public

text: Atlantic Maritime lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Atlantic Maritime ecozone and is composed of 25 physical samples ERS2799860, ERS2799861, ERS2799862, ERS2799863, ERS2799864, ERS2799865, ERS2799866, ERS2799867, ERS2799868, ERS2799869, ERS2799870, ERS2799871, ERS2799872, ERS2799873, ERS2799874, ERS2799875, ERS2799876, ERS2799877, ERS2799878, ERS2799880, ERS2799881, ERS2799882, ERS2799883, ERS2799884, ERS2799885 (corresponding to lakes 07-001, 07-002, 07-003, 07-006, 07-007, 07-008, 07-009, 07-010, 07-011, 07-014, 07-015, 07-021, 07-022, 07-026, 07-028, 07-029, 07-030, 07-031, 07-032, 07-040, 07-047, 07-049, 07-051, 07-055, 07-057).

characteristic: description

text: Yes

text: Canada

characteristic: geographic location (country and/or sea)

text: Atlantic Maritime ecozone

text: metagenome

characteristic: organism

text: metagenome

text: LakePulse ecozone group sample

characteristic: title


Boreal Plains lakes

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Boreal Plains lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Boreal Plains ecozone and is composed of 37 physical samples ERS5372516, ERS5372517, ERS5372518, ERS5372519, ERS5372520, ERS5372521, ERS5372522, ERS5372523, ERS5372524, ERS5372525, ERS5372526, ERS5372527, ERS5372528, ERS5372529, ERS5372530, ERS5372531, ERS5372532, ERS5372533, ERS5372534, ERS5372535, ERS5372536, ERS5372537, ERS5372538, ERS5372539, ERS5372540, ERS5372541, ERS5372542, ERS5372543, ERS5372544, ERS5372545, ERS5372546, ERS5372547, ERS5372548, ERS5372549, ERS5372550, ERS5372551, ERS5372552 (corresponding to lakes 09-287, 09-288, 09-292, 09-297, 09-298, 09-300, 09-302, 09-370, 09-372, 09-374, 09-375, 09-376, 09-378, 09-379, 09-380, 09-383, 09-384, 09-391, 09-393, 09-394, 09-395, 09-397, 09-403, 09-408, 09-410, 09-413, 09-418, 09-419, 09-420, 09-423, 09-427, 09-429, 09-430, 09-432, 09-447, 09-450, 09-454).

text: Yes

text: Canada

text: Boreal Plains ecozone

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


Boreal Shield lakes

text: public

text: Boreal Shield lakes

characteristic: collection date

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Boreal Shield ecozone and is composed of 25 physical samples ERS2799837, ERS2799838, ERS2799839, ERS2799840, ERS2799841, ERS2799842, ERS2799843, ERS2799844, ERS2799845, ERS2799846, ERS2799847, ERS2799848, ERS2799849, ERS2799850, ERS2799851, ERS2799852, ERS2799853, ERS2799854, ERS2799855, ERS2799856, ERS2799857, ERS2799858, ERS2799859, ERS2799890, ERS2799915 (corresponding to lakes 06-071, 06-080, 06-095, 06-102, 06-104, 06-126, 06-127, 06-129, 06-131, 06-132, 06-136, 06-140, 06-141, 06-142, 06-156, 06-161, 06-167, 06-174, 06-196, 06-198, 06-199, 06-217, 06-220, 08-138, 17-050).

text: Yes

text: Canada

text: Boreal Shield ecozone

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


Boreal/Taiga Cordilleras lakes

characteristic: ENA-LAST-UPDATE

text: public

text: Boreal/Taiga Cordilleras lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Boreal/Taiga Cordilleras ecozone and is composed of 25 physical samples ERS6482579, ERS6482580, ERS6482581, ERS6482582, ERS6482583, ERS6482584, ERS6482585, ERS6482586, ERS6482587, ERS6482588, ERS6482589, ERS6482590, ERS6482591, ERS6482592, ERS6482593, ERS6482594, ERS6482595, ERS6482596, ERS6482597, ERS6482598, ERS6482599, ERS6482600, ERS6482601, ERS6482602, ERS6482603 (corresponding to lakes 13-514, 13-515, 13-516, 13-517, 13-518, 13-519, 13-520, 13-521, 13-522, 13-524, 13-525, 13-526, 13-527, 13-560, 13-562, 13-564, 13-565, 13-567, 13-569, 13-587, 13-588, 14-570, 14-571, 14-584, 14-585).

text: Yes

text: Canada

text: Boreal/Taiga Cordilleras ecozone

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


Mixedwood Plains lakes

characteristic: External Id

text: public

text: Mixedwood Plains lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Mixedwood Plains ecozone and is composed of 25 physical samples ERS2799886, ERS2799887, ERS2799888, ERS2799889, ERS2799891, ERS2799892, ERS2799893, ERS2799894, ERS2799895, ERS2799896, ERS2799897, ERS2799898, ERS2799899, ERS2799900, ERS2799901, ERS2799902, ERS2799903, ERS2799904, ERS2799905, ERS2799906, ERS2799907, ERS2799908, ERS2799909, ERS2799910, ERS2799911 (corresponding to lakes 08-097, 08-120, 08-134, 08-135, 08-144, 08-152, 08-155, 08-157, 08-160, 08-164, 08-168, 08-179, 08-180, 08-183, 08-184, 08-186, 08-188, 08-189, 08-193, 08-194, 08-197, 08-210, 08-212, 08-216, 08-219).

text: Yes

text: Canada

text: Mixedwood Plains ecozone

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


Montane Cordillera lakes

text: public

characteristic: SRA accession

text: Montane Cordillera lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Montane Cordillera ecozone and is composed of 30 physical samples ERS6482519, ERS6482520, ERS6482521, ERS6482522, ERS6482523, ERS6482524, ERS6482525, ERS6482526, ERS6482527, ERS6482528, ERS6482529, ERS6482530, ERS6482531, ERS6482532, ERS6482533, ERS6482534, ERS6482535, ERS6482536, ERS6482537, ERS6482538, ERS6482539, ERS6482540, ERS6482541, ERS6482542, ERS6482543, ERS6482544, ERS6482545, ERS6482546, ERS6482547, ERS6482548 (corresponding to lakes 11-471, 11-476, 11-477, 11-479, 11-481, 11-482, 11-483, 11-484, 11-485, 11-488, 11-492, 11-493, 11-495, 11-497, 11-499, 11-501, 11-503, 11-508, 11-513, 11-538, 11-539, 11-540, 11-541, 11-542, 11-544, 11-545, 11-547, 11-556, 11-595, 11-631).

text: Yes

text: Canada

text: Montane Cordillera ecozone

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


Pacific Maritime lakes

text: public

text: Pacific Maritime lakes

characteristic: Submitter Id

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Pacific Maritime ecozone and is composed of 30 physical samples ERS6482549, ERS6482550, ERS6482551, ERS6482552, ERS6482553, ERS6482554, ERS6482555, ERS6482556, ERS6482557, ERS6482558, ERS6482559, ERS6482560, ERS6482561, ERS6482562, ERS6482563, ERS6482564, ERS6482565, ERS6482566, ERS6482567, ERS6482568, ERS6482569, ERS6482570, ERS6482571, ERS6482572, ERS6482573, ERS6482574, ERS6482575, ERS6482576, ERS6482577, ERS6482578 (corresponding to lakes 12-460, 12-461, 12-462, 12-463, 12-465, 12-466, 12-467, 12-473, 12-474, 12-475, 12-504, 12-533, 12-534, 12-535, 12-549, 12-642, 12-643, 12-646, 12-647, 12-648, 12-649, 12-650, 12-657, 12-663, 12-666, 12-670, 12-671, 12-673, 12-674, 12-676).

text: Yes

text: Canada

text: Pacific Maritime ecozone

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


Prairies lakes

text: public

text: Prairies lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Prairies ecozone and is composed of 40 physical samples ERS5372553, ERS5372554, ERS5372555, ERS5372556, ERS5372557, ERS5372558, ERS5372559, ERS5372560, ERS5372561, ERS5372562, ERS5372563, ERS5372564, ERS5372565, ERS5372566, ERS5372567, ERS5372568, ERS5372569, ERS5372570, ERS5372571, ERS5372572, ERS5372573, ERS5372574, ERS5372575, ERS5372576, ERS5372577, ERS5372578, ERS5372579, ERS5372580, ERS5372581, ERS5372582, ERS5372583, ERS5372584, ERS5372585, ERS5372586, ERS5372587, ERS5372588, ERS5372589, ERS5372590, ERS5372591, ERS5372592 (corresponding to lakes 10-277, 10-278, 10-280, 10-281, 10-283, 10-301, 10-347, 10-348, 10-349, 10-350, 10-351, 10-353, 10-354, 10-355, 10-356, 10-357, 10-359, 10-361, 10-362, 10-364, 10-386, 10-399, 10-400, 10-402, 10-404, 10-412, 10-414, 10-416, 10-417, 10-422, 10-434, 10-435, 10-436, 10-437, 10-439, 10-441, 10-442, 10-444, 10-445, 10-446).

text: Yes

text: Canada

text: Prairies ecozone

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


Semi-Arid Plateaux lakes

text: public

text: Semi-Arid Plateaux lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Semi-Arid Plateaux ecozone and is composed of 21 physical samples ERS5372593, ERS5372594, ERS5372595, ERS5372596, ERS5372597, ERS5372598, ERS5372599, ERS5372600, ERS5372601, ERS5372602, ERS5372603, ERS5372604, ERS5372605, ERS5372606, ERS5372607, ERS5372608, ERS5372609, ERS5372610, ERS5372611, ERS5372612, ERS5372613 (corresponding to lakes 18-318, 18-320, 18-321, 18-322, 18-323, 18-324, 18-327, 18-328, 18-329, 18-330, 18-331, 18-332, 18-333, 18-334, 18-335, 18-336, 18-337, 18-338, 18-339, 18-340, 18-341).

text: Yes

text: Canada

text: Semi-Arid Plateaux ecozone

text: metagenome

characteristic: sample composed of

text: metagenome

text: LakePulse ecozone group sample


Taiga Plains lakes

characteristic: ENA-CHECKLIST

text: public

text: Taiga Plains lakes

text: This sample is a virtual sample of co-assembled metagenome reads from multiple physical samples of lake surface water metagenomes from the Taiga Plains ecozone and is composed of 25 physical samples ERS6482488, ERS6482489, ERS6482490, ERS6482491, ERS6482492, ERS6482493, ERS6482494, ERS6482495, ERS6482496, ERS6482497, ERS6482498, ERS6482499, ERS6482500, ERS6482501, ERS6482502, ERS6482503, ERS6482504, ERS6482505, ERS6482506, ERS6482507, ERS6482508, ERS6482509, ERS6482510, ERS6482511, ERS6482512 (corresponding to lakes 04-572, 04-573, 04-574, 04-575, 04-576, 04-577, 04-578, 04-579, 04-580, 04-581, 04-582, 04-583, 04-609, 04-611, 04-612, 04-613, 04-614, 04-615, 04-616, 04-617, 04-618, 04-619, 04-620, 04-621, 04-622).

text: Yes

text: Canada

text: Taiga Plains ecozone

text: metagenome

text: metagenome

text: LakePulse ecozone group sample


text: public

tag: Namespace:GFZ German Research Centre for Geosciences

characteristic: description

text: Chile

text: soil metagenome

text: soil metagenome


text: GFZ German Research Centre for Geosciences

text: public

text: Chile

characteristic: geographic location (country and/or sea)

text: soil metagenome

text: soil metagenome


text: public

text: PA_INSITU_AHOR_T1 (1)

text: Chile

text: soil metagenome

characteristic: organism

text: soil metagenome

text: PA_INSITU_AHOR_T1 (1)


text: public

text: PA_INSITU_AHOR_T1 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T1 (2)

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: PA_INSITU_AHOR_T1 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T1 (3)


characteristic: INSDC center name

text: public

text: PA_BSC_AHOR_T1 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T1 (1)


characteristic: INSDC first public

text: public

text: PA_BSC_AHOR_T1 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T1 (2)


characteristic: INSDC last update

text: public

text: PA_BSC_AHOR_T1 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T1 (3)


text: public

characteristic: INSDC status

text: PA_PLANT_AHOR_T1 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T1 (1)


text: public

characteristic: collection date

text: PA_PLANT_AHOR_T1 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T1 (2)


characteristic: ENA-LAST-UPDATE

text: public

text: PA_PLANT_AHOR_T1 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T1 (3)


characteristic: External Id

text: public

text: PA_INSITU_AHOR_T2 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T2 (1)


text: public

characteristic: SRA accession

text: PA_INSITU_AHOR_T2 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T2 (2)


text: public

characteristic: Submitter Id

text: PA_INSITU_AHOR_T2 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T2 (3)


text: public

text: PA_BSC_AHOR_T2 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T2 (1)


text: public

text: PA_BSC_AHOR_T2 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T2 (2)


text: public

text: PA_BSC_AHOR_T2 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T2 (3)


text: public

text: PA_PLANT_AHOR_T2 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T2 (1)


text: public

text: PA_PLANT_AHOR_T2 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T2 (2)


text: public

text: PA_PLANT_AHOR_T2 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T2 (3)


text: public

text: PA_INSITU_AHOR_T3 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T3 (1)


text: public

text: PA_INSITU_AHOR_T3 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T3 (2)


text: public

text: PA_INSITU_AHOR_T3 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_AHOR_T3 (3)


text: public

text: PA_BSC_AHOR_T3 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T3 (1)


text: public

text: PA_BSC_AHOR_T3 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T3 (2)


text: public

text: PA_BSC_AHOR_T3 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_AHOR_T3 (3)


text: public

text: PA_PLANT_AHOR_T3 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T3 (1)


text: public

text: PA_PLANT_AHOR_T3 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T3 (2)


text: public

text: PA_PLANT_AHOR_T3 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_AHOR_T3 (3)


text: public

text: PA_INSITU_BHOR_T1 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T1 (1)


text: public

text: PA_INSITU_BHOR_T1 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T1 (2)


text: public

text: PA_INSITU_BHOR_T1 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T1 (3)


text: public

text: PA_BSC_BHOR_T1 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T1 (1)


text: public

text: PA_BSC_BHOR_T1 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T1 (2)


text: public

text: PA_BSC_BHOR_T1 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T1 (3)


text: public

text: PA_PLANT_BHOR_T1 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T1 (1)


text: public

text: PA_PLANT_BHOR_T1 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T1 (2)


text: public

text: PA_PLANT_BHOR_T1 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T1 (3)


text: public

text: PA_INSITU_BHOR_T2 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T2 (1)


text: public

text: PA_INSITU_BHOR_T2 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T2 (2)


text: public

text: PA_INSITU_BHOR_T2 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T2 (3)


text: public

text: PA_BSC_BHOR_T2 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T2 (1)


text: public

text: PA_BSC_BHOR_T2 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T2 (2)


text: public

text: PA_BSC_BHOR_T2 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T2 (3)


text: public

text: PA_PLANT_BHOR_T2 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T2 (1)


text: public

text: PA_PLANT_BHOR_T2 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T2 (2)


text: public

text: PA_PLANT_BHOR_T2 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T2 (3)


text: public

text: PA_INSITU_BHOR_T3 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T3 (1)


text: public

text: PA_INSITU_BHOR_T3 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T3 (2)


text: public

text: PA_INSITU_BHOR_T3 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_INSITU_BHOR_T3 (3)


text: public

text: PA_BSC_BHOR_T3 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T3 (1)


text: public

text: PA_BSC_BHOR_T3 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T3 (2)


text: public

text: PA_BSC_BHOR_T3 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_BSC_BHOR_T3 (3)


text: public

text: PA_PLANT_BHOR_T3 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T3 (1)


text: public

text: PA_PLANT_BHOR_T3 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T3 (2)


text: public

text: PA_PLANT_BHOR_T3 (3)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_PLANT_BHOR_T3 (3)


text: public

text: PA_FERTI_AHOR_T3 (1)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_FERTI_AHOR_T3 (1)


text: public

text: PA_FERTI_AHOR_T3 (2)

text: Chile

text: soil metagenome

text: soil metagenome

text: PA_FERTI_AHOR_T3 (2)


text: public

text: PA_FERTI_AHOR_T3 (3)

text: Chile

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text: ena-SAMPLE-TAB-22-08-2023-13:13:37:218-88709

tag: Namespace:St.Olavs hospital

text: Norway

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characteristic: host health state

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characteristic: host scientific name

characteristic: isolate

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characteristic: geographic location (country and/or sea)

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characteristic: organism

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characteristic: INSDC center name

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text: Human

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characteristic: title


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characteristic: INSDC first public

characteristic: INSDC last update

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text: ena-SAMPLE-TAB-22-08-2023-13:13:37:218-88712

text: Norway

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: collection date

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text: Illumina Miseq


text: St.Olavs hospital

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characteristic: SRA accession

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:218-88714

characteristic: Submitter Id

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characteristic: host health state

text: homo sapiens

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq


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text: Human

text: Serratia marcescens

characteristic: sample-alias

text: Serratia marcescens

text: Illumina Miseq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: St.Olavs hospital

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88779

text: Norway

text: missing: third party data

text: homo sapiens

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq

characteristic: sequencing method


text: St.Olavs hospital

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88780

text: Norway

text: missing: third party data

text: homo sapiens

text: Human

text: Serratia marcescens

characteristic: organism

text: Serratia marcescens

text: Illumina Miseq


text: St.Olavs hospital

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88781

characteristic: Submitter Id

characteristic: collection date

text: Norway

text: missing: third party data

text: homo sapiens

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

text: St.Olavs hospital

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88782

text: Norway

characteristic: geographic location (country and/or sea)

text: missing: third party data

characteristic: host health state

text: homo sapiens

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq


characteristic: ENA-FIRST-PUBLIC

text: St.Olavs hospital

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88783

text: Norway

text: missing: third party data

text: homo sapiens

characteristic: host scientific name

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq


text: St.Olavs hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88784

text: Norway

text: missing: third party data

text: homo sapiens

characteristic: isolate

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: St.Olavs hospital

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88785

text: Norway

text: missing: third party data

text: homo sapiens

text: Human

text: Serratia marcescens

characteristic: sample-alias

text: Serratia marcescens

text: Illumina Miseq


text: St.Olavs hospital

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:223-88786

text: Norway

text: missing: third party data

text: homo sapiens

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq

characteristic: sequencing method


text: St.Olavs hospital

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:224-88787

characteristic: Submitter Id

characteristic: collection date

text: Norway

text: missing: third party data

text: homo sapiens

text: Human

text: Serratia marcescens

characteristic: organism

text: Serratia marcescens

text: Illumina Miseq


characteristic: ENA-CHECKLIST

text: St.Olavs hospital

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:224-88788

text: Norway

characteristic: geographic location (country and/or sea)

text: missing: third party data

text: homo sapiens

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: St.Olavs hospital

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-22-08-2023-13:13:37:224-88789

text: Norway

text: missing: third party data

characteristic: host health state

text: homo sapiens

text: Human

text: Serratia marcescens

text: Serratia marcescens

text: Illumina Miseq


text: Universite Grenoble Alpes

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Universite Grenoble Alpes

text: cranberry fritillary

characteristic: common name

text: Leg

characteristic: description

text: France

text: Boloria aquilonaris

text: Boloria aquilonaris

text: Peatland populations


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite Grenoble Alpes

text: public

text: common ringlet

text: Leg

text: France

text: Coenonympha tullia

text: Coenonympha tullia

text: Peatland populations


text: Universite Grenoble Alpes

text: public

characteristic: INSDC status

characteristic: SRA accession

text: violet copper

text: Leg

text: France

text: Helleia helle

text: Helleia helle

text: Peatland populations


text: Universite Grenoble Alpes

text: public

characteristic: Submitter Id

text: violet copper

text: Leg

text: Switzerland

text: Helleia helle

text: Helleia helle

text: Peatland populations


text: public

tag: Namespace:Archaeogenomics group, Department of Biosciences, University of Oslo

characteristic: collection date

text: Extract of bee leg(s)

text: Bombus lapidarius

text: Bombus lapidarius


text: Archaeogenomics group, Department of Biosciences, University of Oslo

text: public

text: Extract of bee leg(s)

text: Bombus lapidarius

characteristic: organism

text: Bombus lapidarius


characteristic: ENA-CHECKLIST

text: public

text: Extract of bee leg(s)

text: Bombus pascuorum

text: Bombus pascuorum


text: Aeromonas sp.

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: not provided

text: Aeromonas sp.

text: India

characteristic: geographic location (country and/or sea)

text: Aeromonas sp.

text: Aeromonas sp.


text: Plasmodium falciparum

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: not provided

text: malaria parasite P. falciparum

text: not provided

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: title


text: Fecal sample from healthy adult

characteristic: Description

characteristic: INSDC center name

text: public

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: feces

text: Netherlands

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: feces from healthy adult


text: Fecal sample from healthy adult

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: feces

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: feces from healthy adult


text: Fecal sample from healthy adult

characteristic: ENA-LAST-UPDATE

text: public

text: feces

characteristic: description

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: feces from health adult


text: Pooled fecal sample from four healthy adults

characteristic: External Id

text: public

characteristic: INSDC status

text: feces

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: pooled feces from healthy adults


text: adult gut microbiota after 0 h of in vitro batch fermentation of P14-A

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: fermented starch using pooled adult faecal inoculum


text: adult gut microbiota after 24 h of in vitro batch fermentation of P14-A

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P14-A

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P14-A (without inoculum)

text: public

text: digesta

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of P14-B

characteristic: ENA-FIRST-PUBLIC

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of P14-B

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome

characteristic: title


text: adult gut microbiota after 48 h of in vitro batch fermentation of P14-B

characteristic: Description

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of P14-B (without inoculum)

characteristic: INSDC center name

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of N16-A

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: project name

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of N16-A

characteristic: INSDC first public

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of N16-A

characteristic: INSDC last update

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of N16-A (without inoculum)

characteristic: ENA-LAST-UPDATE

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of N15-B

text: public

text: digesta

characteristic: description

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 24 h of in vitro batch fermentation of N15-B

characteristic: External Id

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of N15-B

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

characteristic: INSDC status

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: microbiota after 48 h incubation of N15-B (without inoculum)

text: public

characteristic: SRA accession

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 0 h of in vitro batch fermentation of P21-A

text: public

characteristic: Submitter Id

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome

text: fermented starch using pooled adult faecal inoculum


text: adult gut microbiota after 24 h of in vitro batch fermentation of P21-A

text: public

characteristic: collection date

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: adult gut microbiota after 48 h of in vitro batch fermentation of P21-A

text: public

text: digesta

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome


text: microbiota after 48 h incubation of P21-A (without inoculum)

characteristic: ENA-CHECKLIST

text: public

text: digesta

text: Netherlands

text: human gut metagenome

text: human gut metagenome