text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Surface peat, May 2016, Replicate 3

characteristic: description

characteristic: elevation

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF OULU

characteristic: Submitter Id

unit: m

text: RNA from TPB, Surface peat, May 2016, Replicate 1

text: Finland

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: Year-round microbial communities in treatment peatlands

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Surface peat, May 2016, Replicate 2

characteristic: description

characteristic: elevation

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: RNA from TPB, Surface peat, May 2016, Replicate 3

text: Finland

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPA, Surface peat, July 2016, Replicate 1

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Surface peat, July 2016, Replicate 2

characteristic: description

characteristic: elevation

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Surface peat, July 2016, Replicate 3

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Surface peat, July 2016, Replicate 1

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Surface peat, July 2016, Replicate 2

characteristic: description

characteristic: elevation

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPB, Surface peat, July 2016, Replicate 3

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPA, Surface peat, September 2016, Replicate 1

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Surface peat, September 2016, Replicate 2

characteristic: description

characteristic: elevation

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Surface peat, September 2016, Replicate 3

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Surface peat, September 2016, Replicate 1

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Surface peat, September 2016, Replicate 2

characteristic: description

characteristic: elevation

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPB, Surface peat, September 2016, Replicate 3

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPA, Deep peat, April 2016, Replicate 1

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Deep peat, April 2016, Replicate 2

characteristic: description

characteristic: elevation

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Deep peat, April 2016, Replicate 3

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: Year-round microbial communities in treatment peatlands

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Deep peat, April 2016, Replicate 1

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Deep peat, April 2016, Replicate 2

characteristic: description

characteristic: elevation

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPB, Deep peat, April 2016, Replicate 3

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPA, Deep peat, September 2016, Replicate 1

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Deep peat, September 2016, Replicate 2

characteristic: description

characteristic: elevation

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Deep peat, September 2016, Replicate 3

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Deep peat, September 2016, Replicate 1

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Deep peat, September 2016, Replicate 3

characteristic: description

characteristic: elevation

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Deep peat, March 2016, Replicate 2

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPA, Deep peat, March 2016, Replicate 3

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Deep peat, March 2016, Replicate 1

characteristic: description

characteristic: elevation

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPB, Deep peat, March 2016, Replicate 2

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Deep peat, March 2016, Replicate 3

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Deep peat, May 2016, Replicate 1

characteristic: description

characteristic: elevation

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Deep peat, May 2016, Replicate 2

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPA, Deep peat, May 2016, Replicate 3

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Deep peat, May 2016, Replicate 1

characteristic: description

characteristic: elevation

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: Year-round microbial communities in treatment peatlands

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPB, Deep peat, May 2016, Replicate 2

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Deep peat, May 2016, Replicate 3

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Deep peat, July 2016, Replicate 1

characteristic: description

characteristic: elevation

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Deep peat, July 2016, Replicate 2

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPA, Deep peat, July 2016, Replicate 3

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Deep peat, July 2016, Replicate 1

characteristic: description

characteristic: elevation

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPB, Deep peat, July 2016, Replicate 2

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Deep peat, July 2016, Replicate 3

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPA, Deep peat, October 2015, Replicate 2

characteristic: description

characteristic: elevation

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Deep peat, October 2015, Replicate 3

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Deep peat, October 2015, Replicate 2

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Deep peat, October 2015, Replicate 3

characteristic: description

characteristic: elevation

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

text: public

text: RNA from TPA, Deep peat, December 2015, Replicate 3

text: Finland

characteristic: local environmental context

text: wetland metagenome

characteristic: organism

text: wetland metagenome


text: UNIVERSITY OF OULU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA from TPB, Deep peat, December 2015, Replicate 1

text: Finland

text: wetland metagenome

characteristic: project name

text: wetland metagenome

characteristic: title


text: UNIVERSITY OF OULU

text: public

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: RNA from TPB, Deep peat, December 2015, Replicate 2

characteristic: description

characteristic: elevation

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: wetland metagenome

text: wetland metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut de Ciencies del Mar

characteristic: INSDC center name

text: public

tag: Namespace:Institut de Ciencies del Mar

text: Marine biome (ENVO_00000447)

text: Manipulation experiments of surface seawater with six different treatments: Control (CT): incubation of untreated seawater, predator reduced (PR): seawater prefiltered through 1-um filter to remove most predators, Both (CT and PR) had two light cycles: natural light/dark cycle (CL and PL), and darkness (CD and PD), respectively, A diluted treatment (DL): whole seawater diluted 1:4 with 0,2-um filtered seawater to reduce both predation and competition for nutrient and organic carbon resources exposed to natural light/dark cycles, A virus-reduced treatment (VL): whole seawater diluted 1:4 with seawater filtered through a 30-kDa VivaFlow (tangential flow filtration) cartridge to reduce predation, viruses and resource competition, also exposed to natural light/dark cycles, The experiments were performed in 9L Nalgene bottles per triplicate, which were incubated in 200L baths with circulating water to maintain temperature close to in situ conditions during 36/48 hours (until cell abundance reached the stationary phase) and sampled every 12 hours approximately

text: saline water

characteristic: experimental factor

text: Mediterranean Sea

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mediterranean Sea biome (ENVO:01000047)

text: aquatic metagenome

text: REMEI

text: aquatic metagenome

text: Manipulation experiments metagenomes


text: Plasmodium facliparum

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: malaria parasite P. falciparum

characteristic: common name

text: not provided

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum


text: Plasmodium falciparum

text: SC

text: public

text: not provided

characteristic: collection date

text: malaria parasite P. falciparum

text: not provided

characteristic: geographic location (country and/or sea)

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: title


E-MTAB-13203:Sample 10

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

text: E-MTAB-13203:Sample 10

tag: Namespace:Wageningen University and Research

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

text: Protocols: Leaf disks were collected using a cork-borer (Ø 1.8 cm) from six plants from the same treatment group and pooled (=one replicate sample). Eighteen plants were used to obtain a total of three replicates for each treatment-time point combination. Samples were harvested at 3, 6, 24 and 48 hours post-infestation (hpi) of the herbivores, and a different set of plants was used for each treatment-time point combination. Leaf tissues were flash-frozen in liquid nitrogen and stored. Seeds of Brassica nigra (Brassicales: Brassicaceae) were collected from a wild population in Wageningen, The Netherlands (51°57′32′′N, 5°40′23′′E). Plants were grown from seeds in potting soil (Lentse potground no.4, Lent, The Netherlands) in a greenhouse compartment (22 ± 3 °C, 60-70% relative humidity [RH], light: dark regime [L:D] 16:8 h). After one-week from sowing, seedlings were transferred to 1 L pots (1 plant per pot) containing potting soil. Plants were placed on rolling tables (675 × 170 cm) that were automatically flooded every two days (for 20 minutes) with a nutrient solution (NH4 1.2, K 7.2, Ca 4.0, Mg 1.82, NO3 12.4, SO4 3.32, P 1.0, Fe 35.0, Mn 8.0, Zn 5.0, B 20.0, Cu 0.5, Mo 0.5 in mmol/L). The aphid Brevicoryne brassicae (Hemiptera: Aphididae) and caterpillar Plutella xylostella (Lepidoptera: Plutellidae) were reared on Brussels sprouts plants (Brassica oleracea var. gemmifera cv. Cyrus) in a greenhouse or a climate room (22 ± 2 °C, 60-70 % RH and 16:8 h L:D) at the Laboratory of Entomology, Wageningen University. We characterized plant responses to simultaneous and single herbivory by B. brassicae (Bb) aphids and P. xylostella (Px) as compared to transcript profiles of undamaged plants (control). Plants were exposed to herbivores 30 days after sowing (4-weeks-old and 3-6 expanded leaves). Four Px (L1-L2) caterpillars and 10 adults of Bb were placed on the youngest fully expanded leaf alone, or in combination (Bb + Px). To confine herbivores to the induced leaf, a mesh bag (0.04 x 0.05 cm mesh size) was placed around it. The leaf petiole was wrapped with cotton wool to avoid the leaf form breaking, and a wooden stick was present as support for the mesh. In addition, the whole plant was covered by another mesh bag, secured by a rubber band around the pot, to prevent movement of herbivores between plants. The plants that served as control were treated in a similar way as plants receiving herbivores and received mesh bags. Insects fed on the plants during four different exposure times and were removed only before sampling. RNA isolation was performed using the Maxwell® 16 LEV Plant RNA Kit (Promega) and the Maxwell® 16 AS2000 Instrument (Promega), following the manufacturer’ s instructions. To run the Plant RNA protocol, the Maxwell® 16 firmware version ≥4.97 was installed on the Maxwell® 16 AS2000 Instrument. After the total RNA extraction poly(A) enrichment was performed. After fragmentation cDNA was created by reverse transcription and the library was prepared.

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: Brevicoryne brassicae

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 10


E-MTAB-13203:Sample 14

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13203:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 14


E-MTAB-13203:Sample 18

characteristic: ENA first public

text: Wageningen University and Research

text: public

text: E-MTAB-13203:Sample 18

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 18

characteristic: title


E-MTAB-13203:Sample 2

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

text: E-MTAB-13203:Sample 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 2


E-MTAB-13203:Sample 22

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 22

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

text: Brevicoryne brassicae

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 22


E-MTAB-13203:Sample 26

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13203:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 26


E-MTAB-13203:Sample 30

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

text: E-MTAB-13203:Sample 30

characteristic: age

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 30

characteristic: title


E-MTAB-13203:Sample 34

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 34

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 34


E-MTAB-13203:Sample 38

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 38

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

text: Brevicoryne brassicae

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 38


E-MTAB-13203:Sample 42

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13203:Sample 42

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 42


E-MTAB-13203:Sample 46

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 46

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 46

characteristic: title


E-MTAB-13203:Sample 6

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 6

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: Brevicoryne brassicae

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 6


E-MTAB-13203:Sample 12

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 12

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

text: mixed Brevicoryne brassicae and Plutella xylostella

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 12


E-MTAB-13203:Sample 16

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13203:Sample 16

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 16


E-MTAB-13203:Sample 20

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 20

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 20

characteristic: title


E-MTAB-13203:Sample 24

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 24

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 24


E-MTAB-13203:Sample 28

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 28

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 28


E-MTAB-13203:Sample 32

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-13203:Sample 32

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 32


E-MTAB-13203:Sample 36

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 36

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 36

characteristic: title


E-MTAB-13203:Sample 4

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 4

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 4


E-MTAB-13203:Sample 40

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 40

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 40


E-MTAB-13203:Sample 44

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13203:Sample 44

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 44


E-MTAB-13203:Sample 48

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 48

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 48

characteristic: title


E-MTAB-13203:Sample 8

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 8

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 8


E-MTAB-13203:Sample 1

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 1

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 1


E-MTAB-13203:Sample 13

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13203:Sample 13

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 13


E-MTAB-13203:Sample 17

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 17

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 17

characteristic: title


E-MTAB-13203:Sample 21

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 21

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 21


E-MTAB-13203:Sample 25

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 25

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 25


E-MTAB-13203:Sample 29

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-13203:Sample 29

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 29


E-MTAB-13203:Sample 33

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 33

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 33

characteristic: title


E-MTAB-13203:Sample 37

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 37

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 37


E-MTAB-13203:Sample 41

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 41

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 41


E-MTAB-13203:Sample 45

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13203:Sample 45

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 45


E-MTAB-13203:Sample 5

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 5

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 5

characteristic: title


E-MTAB-13203:Sample 9

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 9

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 9


E-MTAB-13203:Sample 11

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 11

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

text: Plutella xylostella

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 11


E-MTAB-13203:Sample 15

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13203:Sample 15

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: Plutella xylostella

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 15


E-MTAB-13203:Sample 19

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 19

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: Plutella xylostella

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 19

characteristic: title


E-MTAB-13203:Sample 23

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 23

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: Plutella xylostella

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 23


E-MTAB-13203:Sample 27

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 27

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

text: Plutella xylostella

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 27


E-MTAB-13203:Sample 3

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-13203:Sample 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: Plutella xylostella

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 3


E-MTAB-13203:Sample 31

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

text: E-MTAB-13203:Sample 31

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: Plutella xylostella

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 31

characteristic: title


E-MTAB-13203:Sample 35

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 35

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: Plutella xylostella

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 35


E-MTAB-13203:Sample 39

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 39

text: ArrayExpress

text: not collected

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: not collected

text: Plutella xylostella

characteristic: infect

text: not applicable

characteristic: isolate

text: Brassica nigra

text: Brassica nigra

text: leaf

characteristic: organism part

text: Brassica nigra

text: Sample 39


E-MTAB-13203:Sample 43

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13203:Sample 43

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: black mustard

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

text: Plutella xylostella

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 43


E-MTAB-13203:Sample 47

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-13203:Sample 47

text: ArrayExpress

text: not collected

text: black mustard

characteristic: common name

text: Cyprus gemmifera

text: plant structure development stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: Plutella xylostella

text: not applicable

text: Brassica nigra

characteristic: organism

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 47

characteristic: title


E-MTAB-13203:Sample 7

characteristic: ENA first public

text: Wageningen University and Research

characteristic: INSDC last update

text: public

text: E-MTAB-13203:Sample 7

text: ArrayExpress

characteristic: broker name

text: not collected

text: black mustard

text: Cyprus gemmifera

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: not collected

text: Plutella xylostella

text: not applicable

text: Brassica nigra

text: Brassica nigra

text: leaf

text: Brassica nigra

text: Sample 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ANLIS Malbran

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:ANLIS Malbran

text: ANLIS "Carlos G. Malbran"

characteristic: collecting institution

characteristic: collector name

text: Argentina

text: not provided

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


text: Plasmodium facliparum

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: common name

text: not provided

characteristic: geographic location (country and/or sea)

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: title


text: Plasmodium falciparum

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: not provided

text: malaria parasite P. falciparum

text: not provided

text: Plasmodium falciparum

text: Plasmodium falciparum


text: University of Oviedo

text: public

tag: Namespace:University of Oviedo

text: house mouse

text: Total RNA from liver

characteristic: description

text: Spain

text: Mus musculus

text: Mus musculus

text: Male

characteristic: sex

text: Liver


characteristic: External Id

text: University of Oviedo

text: public

text: house mouse

text: Total RNA from testis

text: Spain

text: Mus musculus

text: Mus musculus

text: Male

text: Testis


text: Hospital Universitario La Paz

characteristic: INSDC center name

text: public

text: Multidrug-resistant

characteristic: Sequencing motif

tag: Namespace:Hospital Universitario La Paz

text: Lázaro-Perona, Fernando

text: Strain multidrug-resistant

text: Spain

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:UCL GOS Institute of Child Health, University College London

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colorectal cancer cell

text: not collected

characteristic: collection date

text: human

text: Protocols: HCT116 cells were grown in vitro before treatment with siRNA for 48 hours: 7.5ul RNAiMAX / 25 pmol siRNA / 9.6cm2 well RNA was extracted using the RNAeasy plus mini kit (Qiagen, Germany), using RLT buffer to lyse cells, 70-90% ethanol to precipitate the nucleic acids and nuclease free water to resuspend the RNA. 24 samples, prepped with the KAPA mRNA HyperPrep kit (KK8580)

text: adult

characteristic: developmental stage

text: colon cancer

characteristic: disease

text: NRAS WT/MUT (c.181C>A; p.(Q61K))

characteristic: genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCL GOS Institute of Child Health, University College London

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: colorectal cancer cell

text: not collected

text: human

characteristic: common name

text: adult

text: colon cancer

text: NRAS WT/MUT (c.181C>A; p.(Q61K))

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: colorectal cancer cell

text: not collected

text: human

characteristic: description

text: adult

text: colon cancer

text: NRAS WT/WT

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primary cell line

text: naevus cell

text: not collected

characteristic: collection date

text: human

text: Protocols: Primary naevus cells were isolated from patients with CMN by growing cells in vitro using melanocyte media RNA was extracted using the RNAeasy plus mini kit (Qiagen, Germany), using RLT buffer to lyse cells, 70-90% ethanol to precipitate the nucleic acids and nuclease free water to resuspend the RNA. cDNA libraries were prepared using the KAPA mRNA HyperPrep Kit (Roche)

text: juvenile

characteristic: developmental stage

text: congenital melanocytic naevus

characteristic: disease

text: NRAS WT/MUT (c.181C>A; p.(Q61K))

characteristic: genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


name: SAMIN0003769-16S of Post-harvest residential soil amended with cow dung manure, NCRAH

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:Sophayo Mahongnao, Daulat Ram College, University of Delhi

text: IBDC

text: Department of Biochemistry, Daulat Ram College, University of Delhi

text: 16S metagenomic profiling of the post-harvest residential soil amended with cow dung manure and planted with red amaranth.

text: Yes

text: India

text: Delhi

characteristic: geographic location (region and locality)

text: soil metagenome

text: soil metagenome


name: SAMIN0003770-16S of Post-harvest residential soil amended with leaf waste compost, NDRAH

characteristic: External Id

text: Sophayo Mahongnao, Daulat Ram College, University of Delhi

characteristic: INSDC center name

text: public

text: IBDC

characteristic: common name

text: 16S of the post-harvest residential soil amended with leaf waste compost and planted with red amaranth

text: Yes

text: India

characteristic: geographic location (country and/or sea)

text: Delhi

text: soil metagenome

characteristic: organism

text: soil metagenome

characteristic: title


name: SAMIN0003772-16S of the Post-harvest residential soil amended with chemical fertilisers, NFRAH

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IBDC

characteristic: broker name

text: 16S metagenomic profiling of the residential soil amended with chemical fertilizer and planted with red amaranth

characteristic: description

text: Yes

text: India

text: Delhi

text: soil metagenome

text: soil metagenome


name: SAMIN0003771-16S of Post-harvest residential soil amended with kitchen waste compost, NKRAH

characteristic: ENA-CHECKLIST

text: public

text: IBDC

characteristic: collection date

text: 16S metagenomic profiling of the post-harvest residential soil amended with kitchen waste compost and planted with red amaranth

text: Yes

text: India

text: Delhi

text: soil metagenome

text: soil metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SLU

text: public

unit: year

characteristic: age

text: Domestic mixed breed cat

characteristic: breed

text: ArrayExpress

text: not collected

text: domestic cat

text: Protocols: PAXgene blood RNA System (Qiagen Inc., Germantown, MD, USA) PAXgene Blood miRNA kit (PreAnalytiX , Qiagen, Hilden, Germany) NEXTflex™ Small RNA-Seq Kit v3 (Bioo Scientific Corporation, Austin, TX, USA)

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Felis catus

text: Felis catus

text: blood

characteristic: organism part

text: Felis catus

text: male

characteristic: sex


characteristic: External Id

text: SLU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Domestic mixed breed cat

text: ArrayExpress

text: not collected

text: domestic cat

characteristic: common name

text: adult

text: hypertrophic cardiomyopathy

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Felis catus

characteristic: organism

text: Felis catus

text: blood

text: Felis catus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SLU

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: Norwegian Forest cat

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: domestic cat

characteristic: description

text: adult

text: normal

text: not collected

text: not applicable

text: Felis catus

text: Felis catus

text: blood

text: Felis catus

text: female


characteristic: External Id

text: SLU

characteristic: INSDC center name

text: public

text: Norwegian Forest cat

characteristic: breed

text: ArrayExpress

text: not collected

text: domestic cat

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Felis catus

text: Felis catus

text: blood

characteristic: organism part

text: Felis catus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SLU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Norwegian Forest cat

text: ArrayExpress

text: not collected

text: domestic cat

characteristic: common name

text: adult

text: hypertrophic cardiomyopathy

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Felis catus

characteristic: organism

text: Felis catus

text: blood

text: Felis catus

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SLU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: Norwegian Forest cat

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: domestic cat

characteristic: description

text: adult

text: hypertrophic cardiomyopathy

text: not collected

text: not applicable

text: Felis catus

text: Felis catus

text: blood

text: Felis catus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universitat de Barcelona

text: public

tag: Namespace:Universitat de Barcelona

text: Loggerhead turtle

text: Individual SP11_01

text: Hatchling

text: Mediterranean Sea

text: 41.264, 1.957

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Loggerhead turtle

text: Individual SP11_02

text: Hatchling

text: Mediterranean Sea

text: 41.264, 1.957

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

characteristic: INSDC status

text: Loggerhead turtle

characteristic: common name

text: Individual SP11_03

text: Hatchling

text: Mediterranean Sea

text: 41.264, 1.957

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP11_04

text: Hatchling

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

text: 41.264, 1.957

text: Caretta caretta

characteristic: organism

text: Caretta caretta

text: Skin/Muscle


characteristic: ENA-LAST-UPDATE

text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP11_05

text: Hatchling

text: Mediterranean Sea

text: 41.264, 1.957

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle

characteristic: title


characteristic: External Id

text: Universitat de Barcelona

characteristic: INSDC center name

text: public

text: Loggerhead turtle

text: Individual SP11_06

text: Hatchling

text: Mediterranean Sea

text: 41.264, 1.957

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loggerhead turtle

text: Individual SP11_07

text: Hatchling

text: Mediterranean Sea

text: 41.264, 1.957

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP11_08

text: Hatchling

text: Mediterranean Sea

text: 41.264, 1.957

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP05_01

text: Hatchling

text: Mediterranean Sea

text: 41.069, 1.099

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP05_02

text: Hatchling

text: Mediterranean Sea

text: 41.069, 1.099

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP05_03

text: Hatchling

text: Mediterranean Sea

text: 41.069, 1.099

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP05_04

text: Hatchling

text: Mediterranean Sea

text: 41.069, 1.099

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP08_01

text: Hatchling

text: Mediterranean Sea

text: 38.884, 1.406

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP08_02

text: Hatchling

text: Mediterranean Sea

text: 38.884, 1.406

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP08_03

text: Hatchling

text: Mediterranean Sea

text: 38.884, 1.406

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP08_04

text: Hatchling

text: Mediterranean Sea

text: 38.884, 1.406

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP08_05

text: Hatchling

text: Mediterranean Sea

text: 38.884, 1.406

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP08_06

text: Hatchling

text: Mediterranean Sea

text: 38.884, 1.406

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP08_07

text: Hatchling

text: Mediterranean Sea

text: 38.884, 1.406

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP09_01

text: Hatchling

text: Mediterranean Sea

text: 37.598, -0.750

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP09_02

text: Hatchling

text: Mediterranean Sea

text: 37.598, -0.750

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP09_03

text: Hatchling

text: Mediterranean Sea

text: 37.598, -0.750

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP09_04

text: Hatchling

text: Mediterranean Sea

text: 37.598, -0.750

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP09_05

text: Hatchling

text: Mediterranean Sea

text: 37.598, -0.750

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP09_06

text: Hatchling

text: Mediterranean Sea

text: 37.598, -0.750

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP09_07

text: Hatchling

text: Mediterranean Sea

text: 37.598, -0.750

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP02_01

text: Hatchling

text: Mediterranean Sea

text: 40.358, 0.403

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP02_02

text: Hatchling

text: Mediterranean Sea

text: 40.358, 0.403

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_01

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_02

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_03

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_04

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_05

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_06

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_07

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP04_08

text: Hatchling

text: Mediterranean Sea

text: 41.486, 2.349

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP01_01

text: Hatchling

text: Mediterranean Sea

text: 39.256, -0.262

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP01_02

text: Hatchling

text: Mediterranean Sea

text: 39.256, -0.262

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP07_01

text: Hatchling

text: Mediterranean Sea

text: 40.005, 0.032

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP07_02

text: Hatchling

text: Mediterranean Sea

text: 40.005, 0.032

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP07_03

text: Hatchling

text: Mediterranean Sea

text: 40.005, 0.032

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP07_04

text: Hatchling

text: Mediterranean Sea

text: 40.005, 0.032

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP07_05

text: Hatchling

text: Mediterranean Sea

text: 40.005, 0.032

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP07_06

text: Hatchling

text: Mediterranean Sea

text: 40.005, 0.032

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


text: Universitat de Barcelona

text: public

text: Loggerhead turtle

text: Individual SP07_07

text: Hatchling

text: Mediterranean Sea

text: 40.005, 0.032

text: Caretta caretta

text: Caretta caretta

text: Skin/Muscle


E-MTAB-13223:Sample 1

text: Universite Libre de Bruxelles

text: public

text: E-MTAB-13223:Sample 1

tag: Namespace:Universite Libre de Bruxelles

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: leukocyte

text: not collected

text: zebrafish

text: Protocols: FACS-sorting of cd45:Dsred cells. Brains from adult Tg(p2ry12:GFP; cd45:DsRed) fish (n=3), were dissected in 0.9X Dulbecco′s Phosphate Buffered Saline (DPBS) were triturated and treated with Liberase TM at 33°C for 30-45 minutes, fully dissociated using a syringe with a 26G needle and washed in 2% fetal bovine serum diluted in 0.9X DPBS. Cell suspensions were centrifuged at 290g 4ºC 10 min and filtered through a 40µm nylon mesh. Just before flow cytometry analysis, using calcein violet to exclude dead cells (1µM, Thermo Fisher). Flow cytometry acquisition and cell sorting was performed on a FACS ARIA II (Becton Dickinson). RNA Illumina

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: pool of 3 fish

characteristic: individual

text: not applicable

characteristic: isolate

text: Danio rerio

text: Danio rerio

text: brain

characteristic: organism part

text: Danio rerio

text: male and female

characteristic: sex

text: AB

characteristic: strain

text: Sample 1


E-MTAB-13228:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universite Libre de Bruxelles

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13228:Sample 1

text: ArrayExpress

text: microglial cell

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

text: Protocols: FACS-sorting of brain leukocytes. Approximately 8,000 microglial cells (p2ry12+; cd45+ or mhc2dab+; cd45low, n=2 for each Tg) and 1,200 DC-like cells (mhc2dab+; cd45high, n=2) were sorted. RNA Ovation Solo RNA-Seq System (NuGen-TECAN) with the SoLo Custom AnyDeplete Probe Mix (Zebrafish probe set)

characteristic: description

text: adult

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: male and female

text: AB

text: Sample 1


E-MTAB-13228:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite Libre de Bruxelles

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13228:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: microglial cell

text: not collected

text: zebrafish

text: adult

text: wild type genotype

text: not collected

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: brain

text: Danio rerio

text: male and female

text: AB

text: Sample 2

characteristic: title


E-MTAB-13228:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universite Libre de Bruxelles

text: public

text: E-MTAB-13228:Sample 3

text: ArrayExpress

text: microglial cell

text: not collected

text: zebrafish

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Danio rerio

text: Danio rerio

text: brain

characteristic: organism part

text: Danio rerio

text: male and female

characteristic: sex

text: AB

characteristic: strain

text: Sample 3


E-MTAB-13228:Sample 4

characteristic: ENA-LAST-UPDATE

text: Universite Libre de Bruxelles

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13228:Sample 4

text: ArrayExpress

text: microglial cell

text: not collected

characteristic: collection date

text: zebrafish

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Danio rerio

text: Danio rerio

text: brain

text: Danio rerio

text: male and female

text: AB

text: Sample 4


E-MTAB-13228:Sample 5

characteristic: External Id

text: Universite Libre de Bruxelles

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-13228:Sample 5

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: myeloid leukocyte

text: not collected

text: zebrafish

text: adult

text: wild type genotype

text: not collected

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: brain

text: Danio rerio

text: male and female

text: AB

text: Sample 5

characteristic: title


E-MTAB-13228:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universite Libre de Bruxelles

text: public

text: E-MTAB-13228:Sample 6

text: ArrayExpress

text: myeloid leukocyte

text: not collected

text: zebrafish

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Danio rerio

text: Danio rerio

text: brain

characteristic: organism part

text: Danio rerio

text: male and female

characteristic: sex

text: AB

characteristic: strain

text: Sample 6


characteristic: ENA-LAST-UPDATE

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 16 to 18

unit: hour

text: ArrayExpress

text: not collected

characteristic: collection date

text: fruit fly

characteristic: common name

text: Protocols: Wildtype Drosophila melanogaster flies were grown in population cages at 25 degr. Staged 2 hr populations of embryos were collected and aged at 25 degr till the required stage of development. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 1.8 % formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. 1g of frozen embryos were dounce-homogenized, 20 times with a loose pestle and 10 times with a tight pestle, in 10 ml of chilled HB buffer (15 mM Tris-HCl (pH 7.4), 0.34 M sucrose, 15 mM NaCl, 60 mM KCl, 0.2 mM EDTA and 0.2 mM EGTA) on ice. The lysate was filtered through 2 layers of Miracloth and spun at 3,500g for 10 min to pellet the nuclei. The nuclei were then washed in 10 ml of chilled HB buffer, spun at 3,500g for 10 min and resuspended in 3 ml of PBTB buffer (5% (wt/vol) BSA, 0.1% (vol/vol) Triton X-100 in PBS). The nuclei were dissociated by passing them ten times through a 20-G needle and then ten times through a 22-G needle using a 5-ml syringe, and filtered through a 20-µuem Sefar Nitex membrane. The total number of nuclei was estimated by microscopy, and 30 million nuclei aliquots were frozen in liquid nitrogen. Three aliquots of 30x106 nuclei in 2 biological replicates were used for each 3C template preparation. The Hi-C libraries were prepared as previously described (Sexton et al. 2012), using DpnII as restriction enzyme. The final library was prepared using the NEBNext Ultra DNA Library Prep Kit for Illumina (NEB) according to the manufacturer's instructions from at least 1 �g of DNA.

characteristic: description

text: stage 17

text: normal

characteristic: disease

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: egg laying

characteristic: initial time point

text: not applicable

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: mixed

text: OregonR


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: fruit fly

text: stage 10 to 11

text: normal

text: wild type genotype

text: not collected

text: egg laying

text: not applicable

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster

text: mixed

text: OregonR

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITE DE LIMOGES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITE DE LIMOGES

text: house mouse

text: CSR Analysis in WT1 SRBC

text: France

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: CSR Analysis in WT2 SRBC

characteristic: description

text: France

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: CSR Analysis in 3RRKO1 SRBC

text: France

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: CSR Analysis in 3RRKO2 SRBC

text: France

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: house mouse

text: CSR Analysis in 3RRKO3 SRBC

text: France

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

characteristic: Submitter Id

text: house mouse

text: CSR Analysis in c3RR1 SRBC

text: France

text: Mus musculus

text: Mus musculus


text: Institute for Systems Genomics

text: public

text: ena-SAMPLE-TAB-09-08-2023-01:35:44:340-5950

tag: Namespace:Institute for Systems Genomics

text: James Stephenson, Taylor Hains

text: Field Museum

characteristic: collecting institution

text: Citron-crested cockatoo

text: Promethion long reads of reference tree

text: USA

text: United States, Tennessee, The Bird Hut

characteristic: geographic location (region and locality)

text: Private facility

characteristic: habitat

text: adult

characteristic: lifestage

text: Cacatua citrinocristata

text: whole blood

characteristic: organism part

text: ORG.one

characteristic: project name

text: Cacatua citrinocristata

text: Female

characteristic: sex

text: sequence


characteristic: ENA-LAST-UPDATE

text: Institute for Systems Genomics

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: David Carey

text: USDA Forest Service, NRS Delaware, OH

characteristic: collection date

text: white ash

text: Promethion long reads of reference tree

text: USA

text: Wayne County, MI

text: Urban, Creekside

text: adult

text: Fraxinus americana

characteristic: organism

text: leaf

text: ORG.one

text: Fraxinus americana

text: Male

text: sequence

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Institute for Systems Genomics

characteristic: INSDC center name

text: public

text: David Carey

text: USDA Forest Service, NRS Delaware, OH

text: Promethion long reads of reference tree

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Tippecanoe County, Indiana

text: Forest/woodland

text: adult

text: Fraxinus quadrangulata

text: leaf

text: ORG.one

text: Fraxinus quadrangulata

text: Bisexual

text: sequence


text: Institute for Systems Genomics

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: David Carey

text: USDA Forest Service, NRS Delaware, OH

characteristic: collecting institution

text: Promethion long reads of reference tree

text: USA

text: Lucas County, OH

characteristic: geographic location (region and locality)

text: Urban, Creekside

characteristic: habitat

text: adult

characteristic: lifestage

text: Fraxinus pennsylvanica

text: leaf

text: ORG.one

text: Fraxinus pennsylvanica

text: Female

text: sequence


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BOLOGNA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF BOLOGNA

text: Content if the rectum

text: Italy

text: rabbit gut metagenome

text: rabbit gut metagenome


characteristic: ENA first public

text: public

characteristic: INSDC status

tag: Namespace:Fundacion Instituto de Investigacion Fundacion Jimenez Diaz

text: Fundación Instituto de Investigación Sanitaria Fundación Jiménez Díaz, Madrid, Spain

characteristic: collection date

text: Celia Perales

characteristic: collector name

text: Targeted sequences obtained from SARS-CoV-2 in patient Pt500

text: Spain

text: Madrid area

text: Homo sapiens

characteristic: host common name

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF GLASGOW

characteristic: Submitter Id

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF NOTTINGHAM

characteristic: collection date

text: cattle

characteristic: common name

text: RRBS of ICM from oocytes cultured in Defined Media without serum or melatonin (-CP-M). Replicate 1

characteristic: description

text: United Kingdom

text: Bos taurus

text: Bos taurus


tag: attribute

text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media without serum or melatonin (-CP-M). Replicate 2

text: United Kingdom

text: Bos taurus

characteristic: organism

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media without serum or melatonin (-CP-M). Replicate 3

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media without serum with melatonin (-CP+M). Replicate 1

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media without serum with melatonin (-CP+M). Replicate 2

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media without serum with melatonin (-CP+M). Replicate 3

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media with serum without melatonin (+CP-M). Replicate 1

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media with serum without melatonin (+CP-M). Replicate 2

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media with serum without melatonin (+CP-M). Replicate 3

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media with serum with melatonin (+CP+M). Replicate 1

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media with serum with melatonin (+CP+M). Replicate 2

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UNIVERSITY OF NOTTINGHAM

text: public

text: cattle

text: RRBS of ICM from oocytes cultured in Defined Media with serum with melatonin (+CP+M). Replicate 3

text: United Kingdom

text: Bos taurus

text: Bos taurus


text: UPPSALA UNIVERSITY

text: public

tag: Namespace:UPPSALA UNIVERSITY

text: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

characteristic: adapters

text: laboratory environment

characteristic: broad-scale environmental context

text: mRNA transcriptome sequencing of negative control containing buffer

text: sterile water

characteristic: environmental medium

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: laboratory environment

characteristic: local environmental context

text: metagenome

text: HoloFish

characteristic: project name

text: metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Negative blank control 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: laboratory environment

text: sterile water

text: Norway

characteristic: geographic location (country and/or sea)

text: laboratory environment

text: metagenome

text: HoloFish

text: metagenome

text: Illumina NovaSeq 6000

text: Negative blank control 2

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UPPSALA UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: laboratory environment

characteristic: collection date

characteristic: description

text: sterile water

text: Norway

text: laboratory environment

text: metagenome

characteristic: organism

text: HoloFish

text: metagenome

text: Illumina NovaSeq 6000

text: Negative blank control 3


text: UPPSALA UNIVERSITY

text: public

characteristic: adapters

text: laboratory environment

characteristic: broad-scale environmental context

text: sterile water

characteristic: environmental medium

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: laboratory environment

characteristic: local environmental context

text: metagenome

text: HoloFish

characteristic: project name

text: metagenome

text: Illumina NovaSeq 6000

text: Negative blank control 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: laboratory environment

text: sterile water

text: Norway

text: laboratory environment

text: metagenome

text: HoloFish

text: metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Negative blank control 5


characteristic: ENA-LAST-UPDATE

text: UPPSALA UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: laboratory environment

characteristic: collection date

text: sterile water

text: Norway

characteristic: geographic location (country and/or sea)

text: laboratory environment

text: metagenome

text: HoloFish

text: metagenome

text: Illumina NovaSeq 6000

text: Negative blank control 6

characteristic: title


text: UPPSALA UNIVERSITY

text: public

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: mRNA transcriptome sequencing of salmon gut epithelia

characteristic: description

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: Illumina NovaSeq 6000

text: index 3: severe cestode load

text: Size class: Medium

text: intestinal epithelium

text: Salmon transcriptome from F286


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: Illumina NovaSeq 6000

text: index 0: no cestode

text: Size class: Small

text: intestinal epithelium

text: Salmon transcriptome from F087


characteristic: ENA-LAST-UPDATE

text: UPPSALA UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: Salmo salar

text: HoloFish

text: Salmo salar

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: index 1: low cestode load

text: Size class: Large

text: intestinal epithelium

text: Salmon transcriptome from F185