characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG HAS_Bin_00039 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

text: ERS3169932,ERS3169933,ERS3169699,ERS3169725,ERS3169751

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: title


status: PUBLIC

tag: attribute

text: University of Western Brittany

text: public

tag: Namespace:University of Western Brittany

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7D_Bin_00024 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

unit: DD

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Nitrosopumilaceae archaeon

characteristic: project name

text: ERS3169781,ERS3169779,ERS3169780,ERS3169804,ERS3169805,ERS3169831,ERS3169829,ERS3169830

characteristic: sample derived from

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG H3T_Bin_00065of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

text: marine sediment metagenome

text: uncultured Candidatus Nitrosopumilus sp.

characteristic: organism

text: ERS3169700,ERS3169701,ERS3169726,ERS3169727,ERS3169752,ERS3169753

text: multi-marker approach

characteristic: title


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7D_Bin_00052 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon CSP1-1

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon CSP1-1

text: multi-marker approach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A9S_Bin_00032 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: taxonomic identity marker


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG AK7_Bin_00065 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Nitrosopumilaceae archaeon

characteristic: project name

text: ERS3169209,ERS3169210,ERS3169211,ERS3169212,ERS3169213,ERS3169214

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7D_Bin_00083 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

characteristic: sample derived from

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7S_Bin_00027 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

characteristic: project name

text: ERS3169777,ERS3169778,ERS3169802,ERS3169803,ERS3169827,ERS3169828

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG HAK_Bin_00079 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

text: marine sediment metagenome

characteristic: organism

text: ERS3169081,ERS3169082,ERS3169934,ERS3169935

text: multi-marker approach

characteristic: title


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7D_Bin_00075 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Nitrosopumilaceae archaeon

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7S_Bin_00056 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: taxonomic identity marker


text: University of Western Brittany

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG HAS_Bin_00095 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

characteristic: project name

text: ERS3169932,ERS3169933,ERS3169699,ERS3169725,ERS3169751

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG AK7_Bin_00057 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

characteristic: sample derived from

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG AK7_Bin_00081 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Nitrosopumilaceae archaeon

characteristic: project name

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7D_Bin_00092 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

text: ERS3169781,ERS3169779,ERS3169780,ERS3169804,ERS3169805,ERS3169831,ERS3169829,ERS3169830

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: title


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG HKT_Bin_00075 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Candidatus Nitrosopumilus sp.

characteristic: project name

text: ERS3169077,ERS3169078,ERS3169079,ERS3169080

characteristic: sample derived from

text: multi-marker approach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG HKT_Bin_00058 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

text: marine sediment metagenome

characteristic: organism

text: multi-marker approach

characteristic: taxonomic identity marker


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7D_Bin_00065 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon CSP1-1

characteristic: project name

text: Thaumarchaeota archaeon CSP1-1

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7S_Bin_00081 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

text: ERS3169777,ERS3169778,ERS3169802,ERS3169803,ERS3169827,ERS3169828

characteristic: sample derived from

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG HAK_Bin_00119 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

characteristic: project name

text: ERS3169081,ERS3169082,ERS3169934,ERS3169935

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7S_Bin_00098 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: title


text: University of Western Brittany

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG MD_Bin_00050 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon CSP1-1

characteristic: project name

text: ERS3170030,ERS3170031,ERS3170032,ERS3169936,ERS3169937

characteristic: sample derived from

text: Thaumarchaeota archaeon CSP1-1

text: multi-marker approach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG HKT_Bin_00076 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

text: marine sediment metagenome

characteristic: organism

text: multi-marker approach

characteristic: taxonomic identity marker


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG HAS_Bin_00099 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

characteristic: project name

text: ERS3169932,ERS3169933,ERS3169699,ERS3169725,ERS3169751

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A9S_Bin_00033 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

characteristic: sample derived from

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7S_Bin_00119 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon CSP1-1

characteristic: project name

text: Thaumarchaeota archaeon CSP1-1

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG H3D_Bin_00215 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

text: marine sediment metagenome

text: uncultured Candidatus Nitrosopumilus sp.

characteristic: organism

text: ERS3169702,ERS3169703,ERS3169704,ERS3169728,ERS3169729,ERS3169730,ERS3169754,ERS3169755,ERS3169756

text: multi-marker approach

characteristic: title


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG AK7_Bin_00110 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

characteristic: project name

text: ERS3169209,ERS3169210,ERS3169211,ERS3169212,ERS3169213,ERS3169214

characteristic: sample derived from

text: multi-marker approach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7D_Bin_00161 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

characteristic: organism

text: ERS3169781,ERS3169779,ERS3169780,ERS3169804,ERS3169805,ERS3169831,ERS3169829,ERS3169830

text: multi-marker approach

characteristic: taxonomic identity marker


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A9S_Bin_00058 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon CSP1-1

characteristic: project name

text: Thaumarchaeota archaeon CSP1-1

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG AK7_Bin_00137 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

characteristic: organism

characteristic: sample derived from

text: multi-marker approach


text: University of Western Brittany

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7S_Bin_00141 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Nitrosopumilaceae archaeon

characteristic: project name

text: ERS3169777,ERS3169778,ERS3169802,ERS3169803,ERS3169827,ERS3169828

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG AK7_Bin_00091 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: Thaumarchaeota archaeon CSP1-1

characteristic: organism

text: Thaumarchaeota archaeon CSP1-1

text: multi-marker approach

characteristic: title


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG H3T_Bin_00167 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: marine hadal zone (ENVO:01000028)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

characteristic: project name

text: ERS3169700,ERS3169701,ERS3169726,ERS3169727,ERS3169752,ERS3169753

characteristic: sample derived from

text: multi-marker approach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG MD_Bin_00109 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

characteristic: organism

text: ERS3170030,ERS3170031,ERS3170032,ERS3169936,ERS3169937

text: multi-marker approach

characteristic: taxonomic identity marker


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG AK7_Bin_00136 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon CSP1-1

characteristic: project name

text: Thaumarchaeota archaeon CSP1-1

text: multi-marker approach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7S_Bin_00118 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

characteristic: sample derived from

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7D_Bin_00152 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Nitrosopumilaceae archaeon

characteristic: project name

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Western Brittany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit (v1.1.0)

characteristic: assembly software

text: coverage and sequence composition

text: CONCOCT (v1.1.0)

text: marine benthic biome (ENVO:01000024)

characteristic: collection date

text: CheckM (v1.1.3)

text: MAG A7D_Bin_00162 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

text: marine sediment (ENVO:00002113)

text: Pacific Ocean

text: missing: sample group

text: missing: sample group

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

text: marine sediment metagenome

text: uncultured Nitrosopumilaceae archaeon

characteristic: organism

text: uncultured Nitrosopumilaceae archaeon

text: multi-marker approach

characteristic: title


text: University of Western Brittany

text: public

text: Megahit (v1.1.0)

text: coverage and sequence composition

characteristic: binning parameters

text: CONCOCT (v1.1.0)

characteristic: binning software

text: marine benthic biome (ENVO:01000024)

characteristic: broad-scale environmental context

characteristic: completeness score

text: CheckM (v1.1.3)

characteristic: completeness software

characteristic: contamination score

text: MAG A7S_Bin_00182 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.

characteristic: description

text: marine sediment (ENVO:00002113)

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: missing: sample group

characteristic: geographic location (latitude)

text: missing: sample group

characteristic: geographic location (longitude)

text: deep sea sediment

text: abyssal plain (ENVO:00000244)

characteristic: local environmental context

text: marine sediment metagenome

characteristic: metagenomic source

text: uncultured Candidatus Nitrosopumilus sp.

characteristic: project name

characteristic: sample derived from

text: multi-marker approach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Middle East Technical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Middle East Technical University

characteristic: Submitter Id

text: Archaeological

characteristic: collection date

text: onager

characteristic: common name

text: Equid remains

text: Turkey

text: METU

text: Equus hemionus

characteristic: organism

text: Equus hemionus

text: Unknown

characteristic: sex

text: Phalanx bone


text: Middle East Technical University

text: public

text: Archaeological

text: onager

text: Equid remains

characteristic: description

text: Turkey

characteristic: geographic location (country and/or sea)

text: METU

text: Equus hemionus

text: Equus hemionus

text: Unknown

text: Tooth

characteristic: title


characteristic: ENA-CHECKLIST

text: Middle East Technical University

text: public

text: Archaeological

text: onager

text: Equid remains

text: Turkey

text: METU

text: Equus hemionus

text: Equus hemionus

text: Female

text: Tooth


characteristic: ENA-FIRST-PUBLIC

text: Middle East Technical University

text: public

text: Archaeological

text: onager

text: Equid remains

text: Turkey

text: METU

text: Equus hemionus

text: Equus hemionus

text: Male

text: Tooth


characteristic: ENA-LAST-UPDATE

text: Hannover Medical School

text: public

text: ena-SAMPLE-TAB-16-11-2023-09:29:36:461-110367

tag: Namespace:Hannover Medical School

text: gidA transposon mutant from the NR PA14 transposon mutant library; ID 34284; Liberati, N.T., et al., PNAS, 2006

text: Germany

text: Pseudomonas aeruginosa PA14

text: Pseudomonas aeruginosa PA14

text: tngidA


characteristic: External Id

text: Hannover Medical School

text: public

text: ena-SAMPLE-TAB-16-11-2023-09:29:36:461-110368

text: ladS transposon mutant from the NR PA14 transposon mutant library; ID 38371; Liberati, N.T., et al., PNAS, 2006

text: Germany

text: Pseudomonas aeruginosa PA14

text: Pseudomonas aeruginosa PA14

text: tnladS


characteristic: ENA first public

text: Kuwait university

characteristic: INSDC center name

text: public

tag: Namespace:Kuwait university

text: Arabian camel

text: Dromedary camel blood sample

text: Kuwait

text: Camelus dromedarius

text: Camelus dromedarius


text: Kuwait university

characteristic: INSDC last update

text: public

text: Arabian camel

text: Dromedary camel blood sample

text: Oman

text: Camelus dromedarius

text: Camelus dromedarius


SWFR

text: Kuwait university

text: public

characteristic: INSDC status

text: SWFR

text: Arabian camel

text: Dromedary camel blood sample

text: Kuwait

text: Camelus dromedarius

text: Camelus dromedarius


text: Kuwait university

text: public

characteristic: SRA accession

text: Arabian camel

text: Dromedary camel blood sample

text: Saudi Arabia

text: Camelus dromedarius

text: Camelus dromedarius


text: Kuwait university

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Arabian camel

text: Dromedary camel blood sample

text: Saudi Arabia

text: Camelus dromedarius

text: Camelus dromedarius


KWC

text: Kuwait university

text: public

text: KWC

characteristic: collection date

text: Arabian camel

characteristic: common name

text: Dromedary camel blood sample

text: Kuwait

text: Camelus dromedarius

text: Camelus dromedarius


text: Universidad de Costa Rica

text: public

tag: Namespace:Universidad de Costa Rica

text: bacterial isolate

text: Costa Rica

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood or sputum

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Universidad de Costa Rica

text: public

text: bacterial isolate

characteristic: description

text: Costa Rica

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: blood or sputum

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


name: SAMIN0003765-Whole genome resequencing of Indian rice germplasm

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Vikas Kumar Singh, Pallavi Sinha, Uma Maheshwar Singh, Anoop Kishor Singh Gurjar, Somali Vijay Habde

text: IBDC

characteristic: broker name

text: Asian cultivated rice

text: Contains Indian landraces farmer varieties, high yielding varieties and breeding lines.

text: India

text: Oryza sativa

text: Oryza sativa


text: UPPSALA UNIVERSITY

characteristic: INSDC first public

text: public

tag: Namespace:UPPSALA UNIVERSITY

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

unit: cm

characteristic: host length

text: Size class: Medium

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

unit: g

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: AACTGTGC;AACTGTGG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F002


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Large

text: Salmo salar

text: gastrointestinal tract

text: TCGTACAG;TCGTACAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F008

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: CTCACTGC;CTCACTGG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F017


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 3: severe cestode load

text: Size class: Small

text: Salmo salar

text: gastrointestinal tract

text: GTGCTACT;GTGCTACT

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F020

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: CATCATCT;CATCATCT

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F026


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 2: moderate cestode load

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: TGCTACTC;TGCTACTG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F035

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: AGAAGTGT;AGAAGTGT

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F038


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Small

text: Salmo salar

text: gastrointestinal tract

text: AGTGTCAC;AGTGTCAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F047

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: TCACAGGT;TCACAGGT

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F054


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: CCTTAGAC;CCTTAGAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F063

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: GTAAGGTC;GTAAGGTC

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F067


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Large

text: Salmo salar

text: gastrointestinal tract

text: GATCGAGC;GATCGAGG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F082

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: CAAGAGAC;CAAGAGAC

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F090


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 2: moderate cestode load

text: Size class: Large

text: Salmo salar

text: gastrointestinal tract

text: TAGAAGAC;TAGAAGAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F097

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: AGCGTGTA;AGCGTGTA

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F103


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 3: severe cestode load

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: ACTCTCTC;ACTCTCTG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F113

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 3: severe cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Medium

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: TCAGTCTC;TCAGTCTC

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F121


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 2: moderate cestode load

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: CGCTACTC;CGCTACTG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F132

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: GTTGACTC;GTTGACTG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F144


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: CAAGGAAT;CAAGGAAT

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F154

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 3: severe cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: TAACCGAC;TAACCGAG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F168


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: AGAAGGTC;AGAAGGTC

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F183

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: AACTGTGC;AACTGTGG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F189


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 0: no cestode

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: TCGTACAG;TCGTACAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F199

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: CTCACTGC;CTCACTGG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F207


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Large

text: Salmo salar

text: gastrointestinal tract

text: GTGCTACT;GTGCTACT

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F421

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut content

text: gut content

text: Norway

text: gut content

text: Atlantic salmon

characteristic: host diet

text: index 3: severe cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: GCTTGACC;GCTTGACG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut content from F458


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut content

characteristic: description

text: gut content

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Large

text: Salmo salar

text: gastrointestinal tract

text: AGTGTCAC;AGTGTCAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut content from F216

characteristic: title