text: public

text: Portugal

text: blood

text: Haemophilus influenzae

text: Haemophilus influenzae

text: B


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Portugal

characteristic: geographic location (country and/or sea)

text: blood

text: Haemophilus influenzae

characteristic: organism

text: Haemophilus influenzae

text: NT

characteristic: serotype

characteristic: title


text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: Portugal

text: blood

text: Haemophilus influenzae

text: Haemophilus influenzae

text: NT


text: public

text: Portugal

text: blood

text: Haemophilus influenzae

text: Haemophilus influenzae

text: A


text: public

text: Portugal

text: Ear swab

text: Haemophilus influenzae

text: Haemophilus influenzae

text: NT


text: public

text: Portugal

text: sputum

text: Haemophilus influenzae

text: Haemophilus influenzae

text: NT


text: public

text: Portugal

text: bronchial secretions

text: Haemophilus influenzae

text: Haemophilus influenzae

text: NT


text: UOM-BCF

text: public

text: 8 to 10

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

text: Protocols: Mouse left ventricular biopsies were harvested at ZT0 and at ZT12 from C57BL/6J mice acclimatised to a 12 h light:12 h dark cycle. Frozen left ventricle samples were added directly to 1 ml cold lysis buffer (containing 0.32 M sucrose, 5 mM CaCl2, 3 mM MgAc, 2 mM EDTA pH 8, 0.5 mM EGTA, 10 mM Tris-HCl pH 8, 1 mM DTT, 1x protease inhibitor cocktail, 80 U/ml Rnasin Plus and 0.2% Triton X-100) and quickly minced into small pieces using microdissection scissors in a petri dish on ice. In a 1 ml dounce homogeniser, 18 x loose strokes were immediately followed by 3-4 x tight strokes. To eliminate large debris, the suspension was passed over 2 layers of sterile cotton gauze prior to filtration with a 100 mM pluriStrainer (pluriSelect) and a 40 mM Flowmi filter (Sigma). Filtered suspensions were centrifuged at 1000 x g for 8 min at 4°C to pellet the nuclei. The nuclei pellet was suspended in 200 ml ATAC-RSB+Tween (10 mM Tris-HCl pH 7.4, 10 mM NaCl, 3 mM MgCl2, 0.1% Tween-20) and a 5 ml aliquot added in a 1:1 ratio with trypan blue for counting using a manual haemocytometer and light microscope. To isolate cardiomyocyte nuclei, suspensions were pelleted (1000 x g for 8 min at 4°C) in ATAC-RSB-Tween and then resuspended in 500 ml staining buffer (PBS + 2.5% bovine serum albumin) containing rabbit anti-PCM1 primary antibody (1:400, Atlas Antibodies #HPA023374). Tubes were agitated on a rocker at 4°C for 1h. Nuclei were pelleted (1000 x g for 8 min at 4°C) again prior to resuspension in staining buffer containing goat anti-rabbit Cy5 secondary antibody (1:1000, Abcam #ab97077) and DAPI (1:10,000). Tubes were agitated on a rocker at 4°C for 1h. Subsequently, nuclei were pelleted again and resuspended in ATAC-RSB-Tween for imaging flow cytometry or fluorescence-activated nuclei sorting. Sorting of single nuclei was performed on a BD Influx Cell Sorter (BD Biosciences) using a 100mm diameter nozzle and 20 PSI. System alignment and drop delay settings were established using Cytometry Set Up and Tracking (CS&T) beads (BD Biosciences) and AccuDrop beads (BD Biosciences) respectively prior to sorting. Nuclear fraction samples were stained with DAPI and Cy5 before running on the cell sorter. Nuclei concentration was adjusted to run samples at 5,000 events per second and sorted nuclei were collected into individual 1.5 ml polypropylene tubes containing ATAC-RSB-Tween. ATAC-seq library preparation and sequencing. Nuclei from the \"sample collection protocol\" were added directly to the library preparation protocol, see \"nucleic acid library construction protocol\". ATAC-seq libraries were prepared using an Omni-ATAC-Seq protocol. 50,000 nuclei were pelleted by centrifugation at 1000 x g for 8 min at 4°C in ATAC-RSB-Tween. The supernatant was discarded ensuring not to disturb the pellet. Tn5 transposition mixtures were prepared using the Illumina Tagment DNA TDE1 Enzyme and Buffer kit (#20034197) to a final volume of 50 ml containing 25 ml 2x TD buffer, 2.5 ml TDE1 transposase, 16.5 ml PBS, 0.5 ml 0.5% digitonin, 0.5 ml 10% Tween-20 and 5 ml nuclease-free H2O. The transposition mixture was added to the nuclei pellet, pipetting up and down 10 x to mix. Reactions were incubated at 37°C for 30 min at 1000 rpm in an Eppendorf Thermomixer. Following transposition, DNA was cleaned using the Zymo DNA Clean and Concentrator-5 kit (#D4014), eluting the purified DNA fragments in a final volume of 20 ml. Following the transposase reaction, the DNA fragments were PCR amplified with combined dual indexing primers (Integrated DNA Technologies) to produce libraries for sequencing. Library pre-amplification was performed in reactions containing 20 ml DNA, 25 ml NEBNext High-Fidelity 2 ´ PCR master mix (New England BioLabs, #M0541S) and 6.25 ml of primer mix. Thermal cycling was performed at 72°C for 5 min, 98°C for 30 sec, then 5 cycles of 98°C for 10 sec, 63°C for 30 sec and 72°C for 1 min. qPCR was used to determine the number of additional amplification cycles required for each sample in 15 ml reactions: 5 ml pre-amplified mixture, 5 ml NEBNext High-Fidelity 2 ´ PCR master mix, 1.25 ml primer mix, 0.24 ml 25´ SYBR Green I (Invitrogen, #S7563) and 3.51 ml nuclease-free H2O. Thermal cycling was performed on a QuantStudio 7 Flex Real-Time PCR System (Applied Biosystems): 98°C for 30 sec. then 20 cycles of 98°C for 10 sec, 63°C for 30 sec and 72°C for 1 min. Data were collected using QuantStudio Software V1.3 (Applied Biosystems). Relative fluorescence (Rn) values were exported and analysed in Microsoft Excel to determine additional PCR cycles, by determining the number of cycles required for the amplification to reach the exponential phase (1/3 of the maximum-minimum Rn). Additional PCR amplification cycles were performed in a thermal cycler. Following library amplification, a double-sided fragment size selection was performed using Ampure XP beads (Beckman Coulter, #A63880) using a final 1.8x bead buffer:sample ratio to remove primer dimers and fragments >1,000 bp. Library fragment size distribution was assessed by Agilent TapeStation 2200 using Agilent D1000 ScreenTape (#5067-5582) and reagents (#5067-5583).

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart left ventricle

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

tag: Namespace:Kilimanjaro Clinical Research Institute

characteristic: Submitter Id

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from urine from a female patient in Tanzania

text: No

text: Tanzania

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-1119-B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST648 strain FFDD-1125

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from HVS from a female patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: HVS

text: HVS

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST206/ST999 strain FFDD-150


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from urine from a male patient in Tanzania

characteristic: description

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli strain FFDD-205


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a female patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: wound swab

text: wound swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST471 strain FFDD-216

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: HVS

text: HVS

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST6359/ST2+ST741 strain FFDD-224E


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: wound swab

characteristic: isolation source host-associated

text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST617/ST2 strain FFDD-2302


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a male patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: wound swab

text: wound swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli strain FFDD-2368

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: male

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST131/STnov strain FFDD-274


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST683/ST21 strain FFDD-407876


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from stool from a male patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: stool

text: stool

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST648 strain FFDD-44615-L856

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: HVS

text: HVS

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST3572/ST2 strain FFDD-448375-L852


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: wound swab

characteristic: isolation source host-associated

text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST43 strain FFDD-448C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: wound swab

text: wound swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST58/ST87 strain FFDD-453

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST393/ST511 strain FFDD-457B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: wound swab

characteristic: isolation source host-associated

text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST69/ST3 strain FFDD-479592-L1021


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: HVS

text: HVS

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli strain FFDD-495

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: male

text: stool

text: stool

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFDD-496342-L510


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: wound swab

characteristic: isolation source host-associated

text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST476 strain FFDD-516086L359


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from HVS from a female patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: HVS

text: HVS

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST131/ST43 strain FFDD-533305

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from urine from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST410 strain FFDD-533682-L868


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: HVS

characteristic: isolation source host-associated

text: HVS

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-561061-L1041


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: wound swab

text: wound swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST69/ST3/ST2998 strain FFDD-567146

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-576038L481


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: HVS

characteristic: isolation source host-associated

text: HVS

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-576058L482


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a male patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: wound swab

text: wound swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST4981/ST2 strain FFDD-579680

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli STnov/ST3/ST2998 strain FFDD-581486L502


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

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text: diseased

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text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

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text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST10/STnov strain FFDD-588950-B


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: wound swab

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characteristic: organism

text: Escherichia coli

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characteristic: strain

text: Escherichia coli ST44/ST2 strain FFDD-589969

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

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characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from peritoneal_fluid from a male patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: male

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST224 strain FFDD-594618


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

text: Dodoma, Dodoma Region

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characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

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text: wound swab

text: wound swab

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text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST131/ST43 strain FFDD-701551-L1000

characteristic: title


characteristic: External Id

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characteristic: Is the sequenced pathogen host associated?

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characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

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text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST167/ST2 strain FFDD-705422-L1037


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-706142-L1030A


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text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from stool from a male patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: stool

text: stool

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characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST648 strain FFDD-890-A

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from HVS from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

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text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFDD-915


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

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text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

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text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-952


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: wound swab

text: wound swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST167/ST2 strain FFDD-956

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: male

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-967


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a male patient in Tanzania

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: wound swab

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text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-980-702981-SA-B


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: HVS

text: HVS

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST1193/ST53 strain FFDD-999

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dodoma, Dodoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: HVS

text: HVS

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFDD-L1003


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Dodoma Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a female patient in Tanzania

text: No

text: Tanzania

text: Dodoma, Dodoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: wound swab

characteristic: isolation source host-associated

text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST1193/ST53 strain FFDD-L457


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Dodoma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Dodoma, Dodoma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: HVS

text: HVS

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST405/ST477 strain FFDD-L511

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Maweni Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from urine from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kigoma, Kigoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFKG-00-63-16


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Maweni Regional Referral Hospital

text: Escherichia coli isolated from blood from a female patient in Tanzania

text: No

text: Tanzania

text: Kigoma, Kigoma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: blood

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text: blood

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFKG-01-09-97


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Maweni Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Kigoma, Kigoma Region

text: diseased

text: Homo sapiens

text: female

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text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli strain FFKG-01-89-61

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Maweni Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kigoma, Kigoma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST69/ST3 strain FFKG-03-98-42


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

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text: urine

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text: urine

text: Escherichia coli

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST540/ST716 strain FFMG-1009-1-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from blood from a male patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: blood

text: blood

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST44/ST2 strain FFMG-129-01-21

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from urine from a male patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: male

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST167/ST2 strain FFMG-1347-09-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

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text: urine

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text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli strain FFMG-1477-05-21


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from sputum from a female patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: sputum

text: sputum

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST69/ST3 strain FFMG-211-2-21


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

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text: blood

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text: blood

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST1193/ST53 strain FFMG-215-06-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: urine

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text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST224/ST479 strain FFMG-259-2-21

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from wound swab from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST6332/ST471 strain FFMG-303-05-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

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text: Homo sapiens

characteristic: host scientific name

text: male

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text: blood

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text: blood

text: Escherichia coli

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFMG-317-7-21-B


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from urine from a female patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

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characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from blood from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: blood

text: blood

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFMG-346-07-21-Q16


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

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text: urine

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text: Escherichia coli

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli strain FFMG-348-7-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a male patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: wound swab

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text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST38/ST8 strain FFMG-349-06-21-EC

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

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text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFMG-374-7-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from blood from a male patient in Tanzania

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: blood

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text: Escherichia coli

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text: Escherichia coli

text: Escherichia coli strain FFMG-375-3-21


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characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

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text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

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text: wound swab

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characteristic: title


characteristic: ENA-CHECKLIST

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text: Kilimanjaro Clinical Research Institute

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characteristic: SRA accession

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text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from urine from a male patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

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text: Escherichia coli

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text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFMG-488-10-21


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text: SeqAfrica

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characteristic: ENA-CHECKLIST

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text: Homo sapiens

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text: Escherichia coli

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characteristic: Is the sequenced pathogen host associated?

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characteristic: collection date

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text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

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text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST69/ST3 strain FFMG-588-09-21


characteristic: ENA-CHECKLIST

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text: Kilimanjaro Clinical Research Institute

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text: SeqAfrica

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text: Tanzania

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text: female

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text: Escherichia coli

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli strain FFMG-628-4-21


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

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characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

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text: wound swab

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text: Escherichia coli

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characteristic: SRA accession

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characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

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text: blood

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST69/ST3 strain FFMG-750-2-21


characteristic: External Id

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a female patient in Tanzania

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

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characteristic: scientific name

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text: Escherichia coli ST1193/ST53 strain FFMG-751-2-21-A


characteristic: ENA-CHECKLIST

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characteristic: SRA accession

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text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: male

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text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST10/ST2 strain FFMG-791-05-21

characteristic: title


characteristic: External Id

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characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

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text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST410/ST471 strain FFMG-832-3-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

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text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from urine from a female patient in Tanzania

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: urine

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text: Escherichia coli

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST69/ST3 strain FFMG-834-2-21


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: male

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text: Escherichia coli

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

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text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

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text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFMG-841-06-21


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

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text: No

text: Tanzania

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text: diseased

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text: Homo sapiens

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text: Escherichia coli

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text: Escherichia coli ST44/ST2 strain FFMG-881-06-21


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Morogoro, Morogoro Region

text: diseased

text: Homo sapiens

text: female

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text: urine

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text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Shigella sonnei ST155/ST21 strain FFMG-89-1-21

characteristic: title


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text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

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text: Yes

characteristic: Is the sequenced pathogen host associated?

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characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morogoro, Morogoro Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

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text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST1193/ST53 strain FFMG-930-2-21


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Morogoro Regional Referral Hospital

text: Escherichia coli isolated from urine from a male patient in Tanzania

text: No

text: Tanzania

text: Morogoro, Morogoro Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

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text: Escherichia coli

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST4981/ST2 strain FFMG-931-1-21


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Songea, Ruvuma Region

text: diseased

text: Homo sapiens

text: female

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text: urine

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text: Kilimanjaro Clinical Research Institute

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characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

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characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Songea, Ruvuma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

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text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST131/ST43 strain FFSG-07


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

text: Escherichia coli isolated from blood from a male patient in Tanzania

text: No

text: Tanzania

text: Songea, Ruvuma Region

text: diseased

characteristic: host health state

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characteristic: host scientific name

text: male

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text: blood

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text: Escherichia coli

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characteristic: scientific name

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text: Escherichia coli ST131/ST43 strain FFSG-11-A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

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text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Songea, Ruvuma Region

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text: Homo sapiens

text: male

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text: Escherichia coli

characteristic: organism

text: Escherichia coli

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characteristic: strain

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characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from wound swab from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Songea, Ruvuma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFSG-25


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

text: Songea, Ruvuma Region

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characteristic: host health state

text: Homo sapiens

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text: female

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text: Escherichia coli

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characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST2279/ST506 strain FFSG-29


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Songea, Ruvuma Region

text: diseased

text: Homo sapiens

text: male

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text: urine

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text: Escherichia coli

characteristic: organism

text: Escherichia coli

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characteristic: strain

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Ruvuma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Songea, Ruvuma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFSG-44-PUS


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

text: Songea, Ruvuma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

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text: Escherichia coli

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characteristic: scientific name

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text: Escherichia coli ST131/ST43 strain FFSG-48


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Ruvuma Regional Referral Hospital

text: Escherichia coli isolated from urine from a female patient in Tanzania

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Songea, Ruvuma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST127/ST33 strain FFSG-50

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Songea, Ruvuma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST1193/ST53 strain FFSG-56


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

text: Songea, Ruvuma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: wound swab

characteristic: isolation source host-associated

text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST131/ST9 strain FFSG-57-A


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Songea, Ruvuma Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST131/ST9 strain FFSG-58

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Ruvuma Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from HVS from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Songea, Ruvuma Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: HVS

text: HVS

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFSG-60HVS


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

text: Songea, Ruvuma Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli strain FFSG-72


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Ruvuma Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Songea, Ruvuma Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST62/ST757 strain FFSG-74

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tabora, Tabora Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST62/ST757 strain FFTB-21543


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Kitete Regional Referral Hospital

text: Escherichia coli isolated from urine from a male patient in Tanzania

text: No

text: Tanzania

text: Tabora, Tabora Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST1722/ST1088 strain FFTB-2395-Q19


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Tabora, Tabora Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: HVS

text: HVS

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli strain FFTB-28773

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Kitete Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tabora, Tabora Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST648 strain FFTB-31948


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

text: Tabora, Tabora Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST1727/ST910 strain FFTB-32733


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Tabora, Tabora Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: wound swab

text: wound swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST648 strain FFTB-33917

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tabora, Tabora Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: male

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST6 strain FFTB-37724


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

text: Tabora, Tabora Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST120/STnov strain FFTB-42287


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Tabora, Tabora Region

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST58/ST24 strain FFTB-42363

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Kitete Regional Referral Hospital

characteristic: collection date

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tabora, Tabora Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFTB-46469


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

text: Tabora, Tabora Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: urine

characteristic: isolation source host-associated

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST5303/STnov strain FFTB-46764KOX


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Tabora, Tabora Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST8761/ST21 strain FFTB-47255EC

characteristic: title


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

characteristic: collection date

text: Escherichia coli isolated from urine from a female patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tabora, Tabora Region

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: female

text: urine

text: urine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain FFTB-48591EC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: Kitete Regional Referral Hospital

text: Escherichia coli isolated from wound swab from a female patient in Tanzania

text: No

text: Tanzania

text: Tabora, Tabora Region

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: wound swab

characteristic: isolation source host-associated

text: wound swab

text: Escherichia coli

text: Escherichia coli

characteristic: scientific name

text: Escherichia coli

text: Escherichia coli ST648 strain FFTB-6675-Q18


characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: SeqAfrica

text: Kitete Regional Referral Hospital

text: No

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Tabora, Tabora Region

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

text: urine

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST131/ST43 strain FFTB-7939-Q19

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: Yes

characteristic: SRA accession

characteristic: Submitter Id

text: SeqAfrica

characteristic: broker name

text: State University of Zanzibar

characteristic: collection date

text: Escherichia coli isolated from wound swab from a male patient in Tanzania

characteristic: description

text: No

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Stone Town, Zanzibar

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: male

text: wound swab

text: wound swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST14/ST6 strain FFZB-03-EC