characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-17-01-2024-07:24:55:747-4534

text: isolate

text: No

text: Egypt

text: Al-Qalyubiyya

text: not provided

text: Gallus gallus domesticus

text: cloacal swab

text: missing

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2024-07:24:55:747-4535

tag: Namespace:FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

characteristic: Submitter Id

characteristic: collection date

text: isolate

characteristic: description

text: No

text: Egypt

characteristic: geographic location (country and/or sea)

text: Al-Qalyubiyya

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Gallus gallus domesticus

characteristic: host scientific name

characteristic: isolate

text: cloacal swab

text: missing

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-17-01-2024-07:24:55:747-4536

text: isolate

text: No

text: Egypt

text: Al-Qalyubiyya

text: not provided

text: Gallus gallus domesticus

text: cloacal swab

text: missing

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-17-01-2024-07:24:55:747-4537

text: isolate

text: No

text: Egypt

text: Al-Qalyubiyya

text: not provided

text: Gallus gallus domesticus

text: yolk sac

text: missing

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2024-07:24:55:748-4538

characteristic: Submitter Id

characteristic: collection date

text: isolate

text: No

text: Egypt

text: Al-Qalyubiyya

text: not provided

text: Gallus gallus domesticus

text: yolk sac

text: missing

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

text: ena-SAMPLE-TAB-17-01-2024-07:24:55:748-4539

text: isolate

characteristic: description

text: No

text: Egypt

characteristic: geographic location (country and/or sea)

text: Al-Qalyubiyya

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Gallus gallus domesticus

text: yolk sac

text: missing

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UHE

text: public

text: house mouse

characteristic: common name

text: Germany

text: DMBC

characteristic: germline

text: Reinhardt lab

text: Mus musculus

characteristic: organism

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UHE

characteristic: INSDC center name

text: public

text: house mouse

text: Germany

text: PPMBC

text: Reinhardt lab

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UHE

text: public

text: house mouse

text: Germany

text: PPMBDC

text: Reinhardt lab

text: Mus musculus

text: Mus musculus

characteristic: title


text: UHE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Germany

text: MBC

text: Reinhardt lab

text: Mus musculus

text: Mus musculus


text: Pasteur Institute

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2024-12:52:30:194-4001

tag: Namespace:Pasteur Institute

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: France

text: not applicable

characteristic: host scientific name

characteristic: isolate

text: Vibrio cholerae O1 biovar El Tor str. N16961

characteristic: serovar

characteristic: strain

text: ChIPseq anti FLAG in Vibrio cholerae RctB-L651P-3xFLAG (tagged on the chromosomal locus) delta crtS strain (IP)


text: Pasteur Institute

text: public

text: ena-SAMPLE-TAB-17-01-2024-12:52:30:194-4002

text: not provided

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

characteristic: organism

text: ChIPseq anti FLAG in Vibrio cholerae RctB-L651P-3xFLAG (tagged on the chromosomal locus) delta crtS strain (INPUT)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: not provided

characteristic: title

text: not provided


characteristic: ENA first public

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: public

characteristic: Secondary Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: NCBI

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: receipt date

characteristic: sample name

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: NCBI

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Pasteur Institute

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-17-01-2024-14:14:06:046-5349

text: not provided

text: France

text: not applicable

characteristic: organism

characteristic: serovar

characteristic: strain

text: ChIPseq anti FLAG in Vibrio cholerae delta Dam (�dam#4) strain with no FLAG protein (negative control)


characteristic: ENA-FIRST-PUBLIC

text: Pasteur Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2024-14:14:06:046-5350

characteristic: Submitter Id

text: not provided

text: France

text: not applicable

text: ChIPseq anti FLAG in Vibrio cholerae delta Dam (�dam#4) expressing RctB-3xFLAG (tagged on chromosomal locus) strain (IP)


text: Pasteur Institute

text: public

text: ena-SAMPLE-TAB-17-01-2024-14:14:06:046-5351

text: not provided

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

characteristic: host scientific name

characteristic: isolate

text: ChIPseq anti FLAG in Vibrio cholerae delta Dam (�dam#4) expressing RctB-3xFLAG (tagged on chromosomal locus) strain (INPUT)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Pasteur Institute

text: public

text: ena-SAMPLE-TAB-17-01-2024-14:14:06:046-5352

text: not provided

text: France

text: not applicable

text: ChIPseq anti FLAG in Vibrio cholerae delta Dam (�dam#4) expressing RctB-L651P-3xFLAG (tagged on chromosomal locus) strain (IP)

characteristic: title


characteristic: External Id

text: Pasteur Institute

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-17-01-2024-14:14:06:047-5353

text: not provided

text: France

text: not applicable

characteristic: organism

text: ChIPseq anti FLAG in Vibrio cholerae delta Dam (�dam#4) expressing RctB-L651P-3xFLAG (tagged on chromosomal locus) strain (INPUT)


characteristic: ENA-FIRST-PUBLIC

text: NIPH

text: public

text: ELIXIR-Norway

characteristic: broker name

text: N. meningitidis

characteristic: common name

text: Norway

text: not provided

text: Homo sapiens

text: spinal fluid

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NIPH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

characteristic: description

text: Norway

text: not provided

text: Homo sapiens

text: lung

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: COS

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Marcus Koch

characteristic: collection date

text: ddRAD single reads Oyarbide

text: Chile

characteristic: geographic location (country and/or sea)

text: -20.48700118, -70.06453912

text: Tillandsia landbeckii

text: Tillandsia landbeckii


characteristic: ENA-CHECKLIST

text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20,48827947, -70,06318376

text: Tillandsia landbeckii

text: Tillandsia landbeckii


characteristic: ENA-LAST-UPDATE

text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20,4895577547, -70,0618283782

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49083603, -70.06047297

text: Tillandsia landbeckii

text: Tillandsia landbeckii

characteristic: title


characteristic: External Id

text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49211429, -70.05911754

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

characteristic: INSDC center name

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49467078, -70.05640662

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49658813, -70.05437337

text: Tillandsia landbeckii

characteristic: organism

text: Tillandsia landbeckii


characteristic: ENA-FIRST-PUBLIC

text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.487, -70.06725105

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.48827831, -70.06589572

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.48955661, -70.06454036

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.4908349, -70.06318497

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20,49211319, -70,06182957

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49339146, -70.06047414

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49469672, -70.05911869

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49594797, -70.05776322

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49722622, -70.05640773

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49850445, -70.05505221

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.48955543, -70.06725233

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49083374, -70.06589697

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49211204, -70.06454159

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49339033, -70.06318619

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49466862, -70.06183076

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49594689, -70.06047531

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49722515, -70.05911984

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.4985034, -70.05776435

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49978165, -70.05640883

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.50105988, -70.0550533

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49083253, -70.06860897

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49402832, -70.06522053

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49530662, -70.06386512

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49594576, -70.06318741

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49850232, -70.06047649

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49978058, -70.059121

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.50105884, -70.05776548

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20,49083128, -70,07132096

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49210962, -70.06996563

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49338796, -70.06861027

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49466628, -70.0672549

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49594459, -70.06589949

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.4972229, -70.06454407

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49850119, -70.06318862

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49977947, -70.06183316

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.50105775, -70.06047767

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.50361427, -70.05776662

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.50135, -70.069217

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.50295, -70.07165

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20,4870028775, -70,0604712219

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.4940305903, -70.0597964207

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.5004191668, -70.059799328

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.501183, -70.068717

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.503567, -70.07305

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.504067, -70.0746

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.501933, -70.0722

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49868, -70.0639

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.4903, -70.05895

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49028, -70.063554

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads sequencing replicate Oyarbide

text: Chile

text: -20.49843, -70.05958

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49843, -70.05958

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49327, -70.06185

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: Chile

text: -20.49327, -70.06185

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49164, -70.05872

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49295, -70.05994

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49791, -70.05699

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: Chile

text: -20.49791, -70.05699

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: COS

text: public

text: Marcus Koch

text: ddRAD single reads Oyarbide

text: Chile

text: -20.49598, -70.06129

text: Tillandsia landbeckii

text: Tillandsia landbeckii


text: ELKH BRC

text: public

tag: Namespace:ELKH BRC

text: Multidrug resistant Acinetobacter baumannii line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: ATCC BAA-1605

characteristic: strain


text: ELKH BRC

text: public

text: Wild type Acinetobacter baumannii line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: ATCC 17978 (5377 [NCDC KC 755] )


text: ELKH BRC

text: public

text: Multidrug resistant Escherichia coli line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Escherichia coli

text: Escherichia coli


text: ELKH BRC

text: public

text: Wild type Escherichia coli line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Escherichia coli

text: Escherichia coli

text: ATCC_25922 [DSM 1103, NCIB 12210]


text: ELKH BRC

text: public

text: Wild type Klebsiella pneumoniae line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: ATCC 10031 (PCI 602)


text: ELKH BRC

text: public

text: Multidrug resistant Klebsiella quasipneumoniae line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Klebsiella quasipneumoniae

text: Klebsiella quasipneumoniae

text: ATCC 700603 (K6 [CCUG 45421, LMG 20218, MCV37])


text: ELKH BRC

text: public

text: Multidrug resistant Pseudomonas aeruginosa line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: ELKH BRC

text: public

text: Wild type Pseudomonas aeruginosa line adapted to medium (Mueller-Hinton Broth)

text: Hungary

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: ATCC BAA-3107 (857920)


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: KwaZulu-Natal

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae

characteristic: serovar


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Mbandaka


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Coeln


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Isangi

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Bovismorbificans


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Reading

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Isangi

characteristic: serovar


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: Mpumalanga

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: Eastern Cape

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Bovismorbificans


characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Early Data Science, Oncology Data Science, AstraZeneca

text: ArrayExpress

text: not collected

text: house mouse

characteristic: common name

text: Protocols: tumour tissue was isolated, chopped and enzymatically digested Cell lysis happens within nanodroplets in 10x Chromium chips (Chromium Next GEM Single Cell 5' Kit v2) library performed according to Chromium Next GEM Single Cell 5' Kit v2 protocol

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: tumour

characteristic: organism part

text: Mus musculus

text: LibraryA


characteristic: ENA-CHECKLIST

text: Early Data Science, Oncology Data Science, AstraZeneca

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: tumour

text: Mus musculus

text: LibraryB


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

characteristic: description

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: tumour

text: Mus musculus

text: LibraryC


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: tumour

text: Mus musculus

text: LibraryD

characteristic: title


characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: tumour

text: Mus musculus

text: LibraryE


characteristic: INSDC last update

text: public

text: ArrayExpress

text: not collected

text: house mouse

characteristic: common name

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: tumour

text: Mus musculus

text: LibraryF


characteristic: ENA-CHECKLIST

text: UNIBE-IG

text: public

characteristic: INSDC status

text: cattle

text: Holstein

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Holstein


text: UNIBE-IG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

text: BelgianBluexHolstein

text: Switzerland

text: Bos taurus

text: Bos taurus

text: BelgianBluexHolstein


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIBE-IG

text: public

text: cattle

text: Chianina

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Chianina


text: UNIBE-IG

text: public

characteristic: collection date

text: cattle

text: Romagnola

characteristic: description

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Romagnola


characteristic: ENA-FIRST-PUBLIC

text: UNIBE-IG

characteristic: INSDC center name

text: public

text: cattle

text: Salers

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Salers


text: UNIBE-IG

text: public

text: cattle

text: Brown Swiss

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Bos taurus

text: Bos taurus

text: Brown Swiss

characteristic: title


text: UNIBE-IG

characteristic: INSDC first public

text: public

text: cattle

text: Limousin

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Limousin


text: UNIBE-IG

text: public

text: cattle

text: Swiss Fleckvieh

text: Switzerland

text: Bos taurus

characteristic: organism

text: Bos taurus

text: Swiss Fleckvieh


text: UNIBE-IG

characteristic: INSDC last update

text: public

text: cattle

text: Jersey

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Jersey


text: UNIBE-IG

text: public

text: cattle

characteristic: common name

text: Angus

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Angus


text: UNIBE-IG

text: public

text: cattle

text: Simmental

text: Switzerland

text: Bos taurus

text: Bos taurus

text: Simmental


Cistus trichomes

text: Auth

text: public

text: Cistus trichomes

text: Cistus creticus subsp. creticus trichomes isolated from young leaves (developmental stage 2, 1-2cm)

text: Greece

text: Cistus creticus subsp. creticus

text: Cistus creticus subsp. creticus


text: public

tag: Namespace:WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

text: Bangladesh

text: metagenome

text: metagenome

text: human fecal sample


text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: University Park, PA | Pennsylvania State University

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: dinoflagellate metagenome

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: 3636ef49-c3fb-4361-b14a-47bd81d70c8f-asg-metagenome

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Gerakladium sp. JEP-2021

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gimesia benthica

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Gimesia benthica

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 824e902f-ee3e-4e19-b1aa-28828e686396-asg-bin.19

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Paracoccaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Paracoccaceae bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 22f5cadb-daa1-4564-901e-2c7413fb9b0a-asg-bin.41

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Longimicrobiales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Longimicrobiales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 00424c89-24e2-49e2-ba70-749ac406a262-asg-bin.50

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: d602dd49-bc7b-446f-a542-54efd136e444-asg-bin.6

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Nitratireductor aquibiodomus

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Nitratireductor aquibiodomus

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 2efe10c7-7ece-4870-af30-fe8b94127855-asg-bin.80

characteristic: title

text: pyGerJepo1.Nitratireductor_aquibiodomus_1


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Qipengyuania flava

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Qipengyuania flava

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 96278940-0e28-4a9b-a453-66ecd218c308-asg-bin.85

characteristic: tolid


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Acidimicrobiales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Acidimicrobiales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification fully defined by topology

characteristic: taxonomic identity marker

text: d79ccc8c-53a0-4c3c-8094-638342e0feee-asg-bin.94

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Oceaniradius stylonematis

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Oceaniradius stylonematis

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: f4749284-7ece-4f1a-bfa4-5d499b9e3234-asg-bin.10

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: University Park, PA | Pennsylvania State University

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Tepidicaulis sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Tepidicaulis sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 6d8b9b09-a9f0-4521-ba2e-e82c972f98ca-asg-bin.11

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Sediminihaliea sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Sediminihaliea sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: b37e8fa2-d710-4dac-ae71-24a8c2793751-asg-bin.121

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Gerakladium sp. JEP-2021

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Planctomycetota bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Planctomycetota bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 3dce104d-0dce-45ac-b7f7-eba700f94ea4-asg-bin.123

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Alphaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: d4b36c43-a06b-4e97-9d9f-590e9722d0ed-asg-bin.125

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Methylophaga sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: uncultured Methylophaga sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 7810d8f9-248b-4ab0-a17f-6b0d3ec5b663-asg-bin.128

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Marinobacter sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Marinobacter sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: e0bc9a7b-ed35-4f08-a347-44cbfd69ed4a-asg-bin.129

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Hyphomonadaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Hyphomonadaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 8f2a5e73-e2f4-48c8-ab00-d6c7832cc98a-asg-bin.12

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Reichenbachiella sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Reichenbachiella sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: a3e05d79-69d8-4949-a7ba-618a7e226566-asg-bin.130

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Bacteroidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Bacteroidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: b44f5caa-2430-459b-a40d-06da5e974027-asg-bin.133

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Myxococcota bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Myxococcota bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: df3dd314-b992-411f-bde6-f70e75f61a8f-asg-bin.134

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: University Park, PA | Pennsylvania State University

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Balneola sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Balneola sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 8c600e72-b096-4146-a9b6-a18a40a19b60-asg-bin.13

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Balneola sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Balneola sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 823bd228-9863-4f48-b664-7d2997914b6d-asg-bin.14

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Roseibium aggregatum

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Roseibium aggregatum

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: b7c03458-1cc1-4a8c-a348-30db73cd9d6e-asg-bin.1

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Thalassobaculum sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Thalassobaculum sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: faa8e8ba-76a1-413a-bf4c-fe0cfe5a1ac7-asg-bin.22

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Gerakladium sp. JEP-2021

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Cyclobacteriaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Cyclobacteriaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: e640f11d-ed88-477f-b611-337393e06310-asg-bin.26

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Ketobacteraceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Ketobacteraceae bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 1172b765-9f31-4db6-bea8-5762c0610667-asg-bin.27

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Alphaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: 9a5624f5-a025-4a89-bde3-c545e18644cc-asg-bin.29

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Cyclobacteriaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Cyclobacteriaceae bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 7f17972e-910f-433b-9d46-bf72b5f6a249-asg-bin.2

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Ekhidna sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Ekhidna sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: e707b15b-2d61-49d4-a8d2-cbb35840773c-asg-bin.30

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Hoeflea sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Hoeflea sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: e29c1848-f4c9-4a54-82eb-de99860d198a-asg-bin.32

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: ALJADA | ALVAREZ-ROA

characteristic: collected by

text: Australian Institute of Marine Science

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: University Park, PA | Pennsylvania State University

text: vegetative cell

text: Gerakladium sp. JEP-2021

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: marine coral reef biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Rhodospirillales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Rhodospirillales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 29706eec-3215-49e9-b6be-e243b0adebf5-asg-bin.3

characteristic: title


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: aquatic biome

text: ALJADA | ALVAREZ-ROA

text: Australian Institute of Marine Science

characteristic: collecting institution

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: vegetative cell

characteristic: host life stage

text: Gerakladium sp. JEP-2021

characteristic: host scientific name

characteristic: host taxid

text: JOHN PARKINSON

characteristic: identified by

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: marine coral reef biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Rhodospirillales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Rhodospirillales bacterium

text: Pacbio Sequel II

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 685544e8-54a0-4504-9ca6-f21ab3b9bd35-asg-bin.4

characteristic: tolid