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text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:982-242979

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:982-242980

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:982-242981

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242982

text: National Medical Research Center for Hematology

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242983

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242984

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242985

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242986

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242987

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242988

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242989

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242990

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242991

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242992

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242993

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242994

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242995

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242996

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242997

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242998

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-242999

text: National Medical Research Center for Hematology

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-243000

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-243001

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:983-243002

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243003

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243004

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243005

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243006

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243007

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243008

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243009

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243010

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243011

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243012

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243013

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243014

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243015

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243016

text: National Medical Research Center for Hematology

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243017

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243018

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243019

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243020

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243021

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243022

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:984-243023

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243024

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243025

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243026

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243027

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243028

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243029

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243030

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243031

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243032

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243033

text: National Medical Research Center for Hematology

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243034

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:985-243035

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


PYCC 9704

text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: PYCC 9704

tag: Namespace:Yeast Genomics Lab@Nova, UNL, Portugal

text: not provided

text: Subsoil groundwater contaminated with hydrocarbons in a metal working factory

characteristic: description

text: Spain

text: Wickerhamiella verensis

text: Wickerhamiella verensis

text: Wickerhamiella verensis


characteristic: ENA-CHECKLIST

text: Oncology Data Science  AstraZeneca R&D

text: public

tag: Namespace:Oncology Data Science  AstraZeneca R&D

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: Protocols: CT26 and A20, BALB/c mice were subcutaneously implanted into the right flank with 5x105 and 1x107 cells respectively. Tumors were measured using digital calipers measured 3x a week until the end of study or when tumors reached the ethical limit of 1500- 2000mm3 using calipers. CT26 tumor tissues were isolated and total RNA was extracted using the RNeasy 96 QIAcube HT Kit (Qiagen; C/N 74171) according to manufactuers guidelines with a DNase digest included. RNA concentration was determined by Qubit Flex Fluorometer (Invitrogen), RNA purity was determined using a NanoDrop Eight (Thermo Scientific) and RNA integrity was measured using a 4200 Tapestation (Agilent). All samples had a RINe of >7.0. Libraries were prepared using NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England BioLabs; #E7760L) as per manufactuer’s guidelines with 1000ng of RNA input. Ribosomal RNA was removed using the NEBNext® Poly(A) mRNA Magnetic Isolation Module (New England BioLabs; E7490L) Libraries were subjected to 9 cycles of PCR with unique dual indexes (New England BioLabs; E6440L). Libraries were subsequently quantified by Qubit Flex Fluorometer (Invitrogen), and library sizes were determined by 4200 Tapestation (Agilent) and pooled equimolar.

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: subcutaneous

characteristic: organism part

text: tumor

characteristic: sampling site

text: Mus musculus

characteristic: strain


E-MTAB-13704:LUGEMM14 1-1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13704:LUGEMM14 1-1

tag: Namespace:Oncology Data Science Oncology R&D

unit: day

characteristic: age

text: ArrayExpress

text: not collected

text: house mouse

text: Protocols: Samples were collected from GEMMs lung lesions and assessed by MRI quantification of combined lung tumour lesions per animal before & after treatment RNA was extracted using the RNeasy Mini Kit (Qiagen; #74104). RNA concentration was determined by Qubit Flex Fluorometer (Invitrogen), RNA purity was determined using a NanoDrop Eight (Thermo Scientific) and RNA integrity was measured using a 4200 Tapestation (Agilent) Libraries were prepared using NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England BioLabs; E7760L) or NEBNext® Ultra™ II RNA Library Prep Kit (New England BioLabs; E7770L) as per manufactuer’s guidelines. Ribosomal RNA was removed using the NEBNext® Poly(A) mRNA Magnetic Isolation Module (New England BioLabs; E7490L) .

text: wild type genotype

text: not collected

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 1-1


E-MTAB-13704:LUGEMM14 1-4

text: Oncology Data Science Oncology R&D

text: public

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 1-4

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 1-4

characteristic: title


E-MTAB-13704:LUGEMM14 1-5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 1-5

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus

text: LUGEMM14 1-5


E-MTAB-13704:LUGEMM14 1-7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13704:LUGEMM14 1-7

characteristic: age

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 1-7


E-MTAB-13704:LUGEMM14 1-9

text: Oncology Data Science Oncology R&D

text: public

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 1-9

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 1-9


E-MTAB-13704:LUGEMM14 3-18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 3-18

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 3-18

characteristic: title


E-MTAB-13704:LUGEMM14 3-19

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13704:LUGEMM14 3-19

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus

text: LUGEMM14 3-19


E-MTAB-13704:LUGEMM14 3-22

text: Oncology Data Science Oncology R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 3-22

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 3-22


E-MTAB-13704:LUGEMM14 3-24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 3-24

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 3-24


E-MTAB-13704:LUGEMM14 4-25

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13704:LUGEMM14 4-25

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 4-25

characteristic: title


E-MTAB-13704:LUGEMM14 4-26

text: Oncology Data Science Oncology R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 4-26

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus

text: LUGEMM14 4-26


E-MTAB-13704:LUGEMM14 4-27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 4-27

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 4-27


E-MTAB-13704:LUGEMM14 4-33

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13704:LUGEMM14 4-33

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 4-33


E-MTAB-13704:LUGEMM14 4-34

text: Oncology Data Science Oncology R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 4-34

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 4-34

characteristic: title


E-MTAB-13704:LUGEMM14 5-36

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 5-36

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus

text: LUGEMM14 5-36


E-MTAB-13704:LUGEMM14 5-38

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13704:LUGEMM14 5-38

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 5-38


E-MTAB-13704:LUGEMM14 5-42

text: Oncology Data Science Oncology R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 5-42

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 5-42


E-MTAB-13704:LUGEMM14 5-43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 5-43

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 5-43

characteristic: title


E-MTAB-13704:LUGEMM14 6-46

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13704:LUGEMM14 6-46

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus

text: LUGEMM14 6-46


E-MTAB-13704:LUGEMM14 6-47

text: Oncology Data Science Oncology R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 6-47

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 6-47


E-MTAB-13704:LUGEMM14 6-48

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 6-48

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 6-48


E-MTAB-13704:LUGEMM14 6-49

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13704:LUGEMM14 6-49

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 6-49

characteristic: title


E-MTAB-13704:LUGEMM14 6-51

text: Oncology Data Science Oncology R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 6-51

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus

text: LUGEMM14 6-51


E-MTAB-13704:LUGEMM14 7-58

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 7-58

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 7-58


E-MTAB-13704:LUGEMM14 7-60

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science Oncology R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13704:LUGEMM14 7-60

text: ArrayExpress

text: not collected

text: house mouse

text: wild type genotype

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 7-60


E-MTAB-13704:LUGEMM14 7-62

text: Oncology Data Science Oncology R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13704:LUGEMM14 7-62

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: tumour

text: Mus musculus

text: LUGEMM14 7-62

characteristic: title


E-MTAB-13704:LUGEMM14 7-63

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science Oncology R&D

text: public

text: E-MTAB-13704:LUGEMM14 7-63

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus

text: LUGEMM14 7-63


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-13707:SM219_01_PMN_MDSC_AZD6738_1

text: ArrayExpress

text: myeloid derived cell

text: not collected

text: house mouse

text: Protocols: MC38 were cultured in DMEM (Gibco) with 10% FBS (Gibco) and 4T1 were maintained in RMPI 1640 (Gibco) with 10% FBS at 37°C, 5% CO2. CT26 and A20 were cultured in RPMI-1640, 10% FCS, 1% L-Glutamine at 37°C , 7.5% CO2. A20 media was further supplemented with 0.05 mM 2-mercaptoethanol and 1% Pen Strep. Unless otherwise stated, mice were subcutaneously injected with 5x105 MC38 tumor cells in DPBS into the right flank while BALB/c mice were injected orthotopically with 1x105 4T1 tumor cells in the mammary fat pad using a 27 1⁄2g needle on Day 0 of study. For CT26 and A20, BALB/c mice were subcutaneously implanted into the right flank with 5x105 and 1x107 cells respectively. Tumors were measured using digital calipers measured 3x a week until the end of study or when tumors reached the ethical limit of 1500- 2000mm3 using calipers. RNA was extracted using Quick-RNA Microprep Kit (Zymo Research). Libraries for RNA sequencing were generated using the Takara SMART-Seq v4 PLUS Kit (Takara Bio; R400752) according to the manufacturer’s protocol, with the following specificities. An input of 10ng of RNA per sample calculated from Agilent TapeStation DV200 values was used for cDNA generation. Post cDNA generation cleanup, cDNA for all samples were normalized to the cDNA concentration of the lowest yielding sample. Thus, cDNA input into library preparation was the same for all samples.

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: strain


text: Oncology Data Science  AstraZeneca R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13707:SM219_03_PMN_MDSC_AZD6738_3

characteristic: Submitter Id

text: ArrayExpress

text: myeloid derived cell

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science  AstraZeneca R&D

text: public

text: ArrayExpress

characteristic: broker name

text: myeloid derived cell

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13707:SM512_10_M_MDSC_VEHICLE_2_OFF_DOSE

text: ArrayExpress

text: myeloid derived cell

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus


text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13707:SM512_11_M_MDSC_VEHICLE_3_OFF_DOSE

text: ArrayExpress

text: myeloid derived cell

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science  AstraZeneca R&D

text: public

text: E-MTAB-13707:SM512_12_M_MDSC_AZD6738_25_1_OFF_DOSE

characteristic: Submitter Id

text: ArrayExpress

text: myeloid derived cell

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science  AstraZeneca R&D

text: public

text: E-MTAB-13707:SM512_13_M_MDSC_AZD6738_25_2_OFF_DOSE

text: ArrayExpress

characteristic: broker name

text: myeloid derived cell

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: title


text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13707:SM512_4_PMN_MDSC_VEHICLCE_1_OFF_DOSE

text: ArrayExpress

text: myeloid derived cell

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science  AstraZeneca R&D

text: public

characteristic: SRA accession

text: E-MTAB-13707:SM512_5_PMN_MDSC_VEHICLCE_2_OFF_DOSE

text: ArrayExpress

text: myeloid derived cell

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science  AstraZeneca R&D

text: public

text: E-MTAB-13707:SM512_6_PMN_MDSC_VEHICLCE_3_OFF_DOSE

characteristic: Submitter Id

text: ArrayExpress

text: myeloid derived cell

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus


text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13707:SM512_7_PMN_MDSC_AZD6738_25_1_OFF_DOSE

text: ArrayExpress

characteristic: broker name

text: myeloid derived cell

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13707:SM512_8_PMN_MDSC_AZD6738_25_2_OFF_DOSE

text: ArrayExpress

text: myeloid derived cell

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science  AstraZeneca R&D

text: public

characteristic: SRA accession

text: E-MTAB-13707:SM512_9_M_MDSC_VEHICLE_1_OFF_DOSE

text: ArrayExpress

text: myeloid derived cell

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: strain


text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: PMN cell

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science  AstraZeneca R&D

text: public

text: ArrayExpress

characteristic: broker name

text: MON cell

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: myeloid derived cells

text: not collected

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

characteristic: organism part

text: tumour

characteristic: sampling site

text: Mus musculus


text: Oncology Data Science  AstraZeneca R&D

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13707:TG812_17_PMN_MDSC_AZD6738_1

text: ArrayExpress

text: myeloid derived cells

text: not collected

text: house mouse

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oncology Data Science  AstraZeneca R&D

text: public

text: E-MTAB-13707:TG812_18_PMN_MDSC_AZD6738_2

characteristic: Submitter Id

text: ArrayExpress

text: myeloid derived cells

text: not collected

characteristic: collection date

text: house mouse

text: wild type genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oncology Data Science  AstraZeneca R&D

text: public

text: E-MTAB-13707:TG812_19_PMN_MDSC_AZD6738_3

text: ArrayExpress

characteristic: broker name

text: myeloid derived cells

text: not collected

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: myeloid

text: tumour

text: Mus musculus

characteristic: title


text: YANGZHOU UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:YANGZHOU UNIVERSITY

text: Vibrio?parahaemolyticus strains isolated from different sources in China

text: China

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: Clinical

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: Vibrio?parahaemolyticus

characteristic: serovar

text: Vibrio?parahaemolyticus strains in China


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: YANGZHOU UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: China

characteristic: geographic location (country and/or sea)

text: not provided

text: Shellfish

text: Seafood

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: Vibrio?parahaemolyticus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YANGZHOU UNIVERSITY

text: public

characteristic: collection date

text: China

text: not provided

text: Shrimp

characteristic: isolate

text: Seafood

text: Vibrio parahaemolyticus

characteristic: organism

text: Vibrio parahaemolyticus

text: Vibrio?parahaemolyticus


text: YANGZHOU UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: description

text: China

text: not provided

text: Fish

text: Seafood

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: Vibrio?parahaemolyticus

characteristic: title


text: YANGZHOU UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: China

text: not provided

text: Fish

text: Freshwater food

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: Vibrio?parahaemolyticus


text: YANGZHOU UNIVERSITY

text: public

text: China

text: not provided

characteristic: host health state

text: Shrimp

characteristic: host scientific name

text: Freshwater food

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: Vibrio?parahaemolyticus

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: YANGZHOU UNIVERSITY

text: public

characteristic: SRA accession

text: China

text: not provided

text: Freshwater

text: Freshwater

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: Vibrio?parahaemolyticus


characteristic: ENA first public

text: public

tag: Namespace:Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

characteristic: Submitter Id

text: Commercial soil

characteristic: broad-scale environmental context

text: Chitin, week 2, replica 1

text: Greenhouse soil

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenhouse

characteristic: local environmental context

text: metagenome

text: V3, V4 region from Klindworth et al.

characteristic: pcr primers

text: Chitinomix, Soil metabaracoding data for 16S and ITS regions of lettuce rhizosphere grown in potting substrate and greenhouse soil with or withouth chitin amendment

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: V3, V4

characteristic: target subfragment


characteristic: External Id

text: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Commercial soil

characteristic: collection date

text: Chitin, week 2, replica 3

characteristic: description

text: Greenhouse soil

text: Belgium

text: Greenhouse

text: metagenome

characteristic: organism

text: V3, V4 region from Klindworth et al.

text: metagenome

text: Illumina MiSeq

text: 16S rRNA gene

text: V3, V4

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Commercial soil

characteristic: broad-scale environmental context

text: Chitin, week 2, replica 2

text: Greenhouse soil

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

text: Greenhouse

text: metagenome

text: V3, V4 region from Klindworth et al.

text: metagenome

text: Illumina MiSeq

text: 16S rRNA gene

text: V3, V4


text: public

text: Commercial soil

text: Untreated, week 2, replica 1

text: Peat substrate

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenhouse

characteristic: local environmental context

text: metagenome

text: V3, V4 region from Klindworth et al.

characteristic: pcr primers

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: V3, V4


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Commercial soil

characteristic: collection date

text: Untreated, week 4, replica 1

characteristic: description

text: Peat substrate

text: Belgium

text: Greenhouse

text: metagenome

text: V3, V4 region from Klindworth et al.

text: metagenome

text: Illumina MiSeq

text: 16S rRNA gene

text: V3, V4

characteristic: target subfragment


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Commercial soil

characteristic: broad-scale environmental context

text: Untreated, week 4, replica 2

text: Peat substrate

text: Belgium

text: Greenhouse

text: metagenome

characteristic: organism

text: V3, V4 region from Klindworth et al.

text: metagenome

text: Illumina MiSeq

text: 16S rRNA gene

text: V3, V4

characteristic: title


text: public

text: Commercial soil

text: Chitin, week 2, replica 1

text: Greenhouse soil

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenhouse

characteristic: local environmental context

text: metagenome

text: ITS1-F and ITS2 primers from Bellemain et al.

characteristic: pcr primers

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: Internal Transcribed Spacer


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Commercial soil

characteristic: collection date

text: Chitin, week 2, replica 2

text: Greenhouse soil

text: Belgium

text: Greenhouse

text: metagenome

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Internal Transcribed Spacer

characteristic: target gene


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Commercial soil

characteristic: broad-scale environmental context

text: Chitin, week 2, replica 3

characteristic: description

text: Greenhouse soil

text: Belgium

text: Greenhouse

text: metagenome

text: metagenome

text: Illumina MiSeq

text: Internal Transcribed Spacer

characteristic: target subfragment


text: public

text: Commercial soil

text: Untreated, week 4, replica 1

text: Peat substrate

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenhouse

characteristic: local environmental context

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq

text: Internal Transcribed Spacer

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Tree of Life Programme

text: aquatic biome

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: marine benthic biome

text: sea squirt metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: sea squirt metagenome

characteristic: specimen id

characteristic: specimen voucher

text: 8651eb63-5e7a-412d-9beb-c69443a84265-asg-metagenome

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Trididemnum nubilum

text: hermaphrodite

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification fully defined by topology

text: f663e9ca-50e2-42ea-8c32-31043ab1c1a7-asg-MAGScoT_cleanbin_000009


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collection date

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

text: sea squirt metagenome

text: Bdellovibrionales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Bdellovibrionales bacterium

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: 8d385c15-f5b3-4413-8283-41c79c2f1555-asg-MAGScoT_cleanbin_000013


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Trididemnum nubilum

text: hermaphrodite

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Thermohalobaculum sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: Thermohalobaculum sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

text: 219eb4d2-5a7f-4a9c-bb48-1bd73b0b13f7-asg-MAGScoT_cleanbin_000016


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collection date

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

text: sea squirt metagenome

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 434dea76-fa80-4a28-b4b4-d8b7c789d3a7-asg-MAGScoT_cleanbin_000017


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Trididemnum nubilum

text: hermaphrodite

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Kordiimonas sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: Kordiimonas sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: 9e95b9f0-403b-424d-ade2-f4a04d36e105-asg-MAGScoT_cleanbin_000018


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collection date

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

text: sea squirt metagenome

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: eddd2acc-49b6-43ff-9c25-a54e195bc5fc-asg-MAGScoT_cleanbin_000019


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Trididemnum nubilum

text: hermaphrodite

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Pseudohongiella sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: uncultured Pseudohongiella sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: e05c5ecc-af14-43a7-87ef-81674bc34259-asg-MAGScoT_cleanbin_000001


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collection date

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

text: sea squirt metagenome

text: Paracoccaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Paracoccaceae bacterium

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 350b2efe-0a6b-4517-9abd-7d936c5c7035-asg-MAGScoT_cleanbin_000002


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Trididemnum nubilum

text: hermaphrodite

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Halieaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: Halieaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

text: 85da4996-85f9-4319-98c4-44bae27e31de-asg-MAGScoT_cleanbin_000003


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collection date

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

text: sea squirt metagenome

text: Hyphomicrobiales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Hyphomicrobiales bacterium

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 9748b210-d60d-4ec4-9e47-c99c5e148e46-asg-MAGScoT_cleanbin_000004


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Trididemnum nubilum

text: hermaphrodite

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Rhizobiaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: Rhizobiaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: 0457104f-96d0-4b83-b9e7-b63b96c6be1e-asg-MAGScoT_cleanbin_000005


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collection date

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

text: sea squirt metagenome

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 3628a75d-2d1f-48c2-bb7e-2c568f54228a-asg-MAGScoT_cleanbin_000006


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Trididemnum nubilum

text: hermaphrodite

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Prochloron sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: Prochloron sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: dac035e6-ce62-414d-a23f-31881e3e1573-asg-MAGScoT_cleanbin_000007


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collection date

characteristic: depth

text: adult tunicate tissue

text: Japan

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Trididemnum nubilum

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Trididemnum nubilum

text: marine benthic biome

text: sea squirt metagenome

text: Thermodesulfobacteriota bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Thermodesulfobacteriota bacterium

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: 274520fc-c05b-446e-8c5d-ef4d51f8906c-asg-MAGScoT_cleanbin_000008