characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 31/10/2022

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


status: PUBLIC

text: F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then heat stressed at 21C for 7 days followed by an incubation at 13C for 16 days to allow recovery before harvesting (recovery sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.

tag: attribute

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 17/11/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

tag: Namespace:Genoscope CEA

text: missing: data agreement established pre-2023

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-25 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: Genetic cross of Perharidy and Saint Guenole strains, France

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-25.


text: F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then incubated at 13C for a further 7 days before harvesting (control sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 30/10/2022

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

text: RNA extracted from Saccharina latissima strain F2.27.2-10 for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

text: RNA extracted from Saccharina latissima strain F2.27.2-10.

characteristic: title


text: F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then heat stressed at 21C for 7 days before harvesting (7 day stress sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 31/10/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 17/11/2022

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 30/10/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-42 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-42.


text: F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then heat stressed at 21C for 7 days before harvesting (7 day stress sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then heat stressed at 21C for 7 days before harvesting (7 day stress sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 31/10/2022

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 17/11/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 30/10/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-44 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-44.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 31/10/2022

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 17/11/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


LU-dna_1 LU-dna_2

text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater plus antibiotics. Grown under 16:8h white light at 15C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LU-dna_1 LU-dna_2

text: Gametophyte derived from field-isolated sporophyte. SLPER63f and SLPER63m are sister and brother.

characteristic: additional details

text: Chloe Jollivet

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Chloe Jollivet

characteristic: identification by

text: Morphology, genome sequenced

text: Saccharina latissima

characteristic: organism

text: haploid

characteristic: ploidy

text: LU-dna_1 LU-dna_2

text: DNA extracted from Saccharina latissima strain SLPER63f7 for genome sequencing.

text: coastal

text: English Channel

text: Perharidy, Santec, Britanny, France

text: marine

text: Saccharina latissima

text: female

text: morphology, genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

text: DNA extracted from Saccharina latissima strain SLPER63f7.


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Genome of this strain sequenced as part of the Phaeoexplorer project. Sampled before 2000.

text: Klaus Luning

text: missing: data agreement established pre-2023

text: gametophyte

text: Klaus Luning

text: Morphology, genome sequenced

characteristic: identification method

text: Saccorhiza dermatodea

text: haploid

characteristic: sample alias

text: DNA extracted from Saccorhiza dermatodea strain SderLu1190fm for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

text: No precise data, likely Atlantic Canada, or Greenland,

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccorhiza dermatodea

characteristic: sequencing centre sample code

text: monoicous

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Saccorhiza dermatodea strain SderLu1190fm.

characteristic: title


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater plus antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Original gametophyte isolated from the field. SpolBR94f and SpolBR94m are sister and brother. Sampled in 1994.

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Saccorhiza polyschides

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Saccorhiza polyschides strain SpolBR94f for genome sequencing.

text: coastal

text: English Channel

text: Brittany - no precise data, probably Roscoff area, France

text: marine

text: Saccorhiza polyschides

text: female

text: whole thallus

text: DNA extracted from Saccorhiza polyschides strain SpolBR94f.


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. SpolBR94m and SpolBR94f are brother and sister. Sampled in 1994.

text: Akira F. Peters

text: gametophyte

text: France

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Saccorhiza polyschides

text: haploid

characteristic: sample alias

text: DNA extracted from Saccorhiza polyschides strain SpolBR94m for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Brittany (no precise data, probably Roscoff area), France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccorhiza polyschides

characteristic: sequencing centre sample code

text: male

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Saccorhiza polyschides strain SpolBR94m.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Direct zol

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Saccorhiza polyschides

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Saccorhiza polyschides strain Sac.pol_SP1 for analysis of differential gene expression..

text: coastal

text: English Channel

text: Perharidy beach, Roscoff, France

text: marine

text: Saccorhiza polyschides

text: young sporophyte (about 5 cm)

text: RNA extracted from Saccorhiza polyschides strain Sac.pol_SP1.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: Direct zol

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Akira F. Peters

text: Saccorhiza polyschides

text: haploid

characteristic: sample alias

text: RNA extracted from Saccorhiza polyschides strain Sac.pol_SP2 for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy beach, Roscoff, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccorhiza polyschides

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: young sporophyte (about 5 cm)

characteristic: tissue type

text: RNA extracted from Saccorhiza polyschides strain Sac.pol_SP2.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Direct zol

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: missing: data agreement established pre-2023

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Saccorhiza polyschides

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Saccorhiza polyschides strain Sac.pol_SP3 for analysis of differential gene expression..

text: coastal

text: English Channel

text: Perharidy beach, Roscoff, France

text: marine

text: Saccorhiza polyschides

text: young sporophyte (about 5 cm)

text: RNA extracted from Saccorhiza polyschides strain Sac.pol_SP3.


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Akira F. Peters

text: gametophyte

text: France

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Saccorhiza polyschides

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccorhiza polyschides

text: male

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: nd

characteristic: generation

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Didier Aurelle

characteristic: identification by

text: Sargassum natans

characteristic: organism

text: diploid

characteristic: ploidy

text: DNA extracted from Sargassum natans VIII strain Sag.nat1 for genome sequencing.

text: Sargassum natans

characteristic: sequencing centre sample code

text: nd

text: thallus

text: DNA extracted from Sargassum natans VIII strain Sag.nat1.


text: Petri dish cultures in Provasoli-enriched seawater plus antibiotics. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Publication: Kawai, H., Maeba, Shunsuke, Sasaki, Hideaki, Okuda, Kazuo & Henry, Eric C. 2003 Protist 154, 211-228.

characteristic: additional details

text: Eric Henry

text: nd

text: Italy

text: Eric Henry

text: Morphology, genome sequenced

characteristic: identification method

text: Schizocladia ischiensis

characteristic: sample alias

text: DNA extracted from Schizocladia ischiensis strain KU-0333 for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Mediterranean Sea

characteristic: sampling sea

text: Ischia, Naples area, Italy

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Schizocladia ischiensis

text: nd

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Schizocladia ischiensis strain KU-0333.

characteristic: title


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics. Grown under 16:8h white light at 13C.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Qiagen RNeasy kit

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

text: Eric Henry

characteristic: collection date

text: nd

characteristic: generation

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Eric Henry

characteristic: identification by

text: Morphology, genome sequenced

text: Schizocladia ischiensis

characteristic: organism

text: RNA extracted from Schizocladia ischiensis strain KU-0333 for RNA-seq-based genome annotation.

text: coastal

text: Mediterranean Sea

text: Ischia, Naples area, Italy

text: marine

text: Schizocladia ischiensis

characteristic: sequencing centre sample code

text: nd

text: whole thallus

text: RNA extracted from Schizocladia ischiensis strain KU-0333.


text: Air-bubbled 2 L flask culture in Provasoli-enriched seawater. Grown under 12:12h light at 20C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: Extraction date

text: protocol HiC Pasteur

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Eric Henry

text: nd

text: Italy

text: Eric Henry

text: Morphology, genome sequenced

characteristic: identification method

text: Schizocladia ischiensis

characteristic: sample alias

text: DNA extracted from Schizocladia ischiensis strain KU-0333 for Hi-C analysis.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Mediterranean Sea

characteristic: sampling sea

text: Ischia, Naples area, Italy

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Schizocladia ischiensis

text: nd

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

text: Scytosiphon promiscuus

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Scytosiphon promiscuus strain 990511-Asari-6-male for genome sequencing.

text: coastal

text: Pacific Ocean

text: Asari, Otaru, Hokkaido, Japan

text: marine

text: Scytosiphon promiscuus

characteristic: sequencing centre sample code

text: male

text: whole thallus

text: DNA extracted from Scytosiphon promiscuus strain 990511-Asari-6-male.


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. Independent isolate, not related to 110409-Otamoi-16-male.

characteristic: additional details

text: Masakazu Hoshino

text: gametophyte

text: Japan

text: Kazuhiro Kogame

text: Morphology, genome sequenced

characteristic: identification method

text: Scytosiphon promiscuus

text: haploid

characteristic: sample alias

text: DNA extracted from Scytosiphon promiscuus strain 000310-Muroran-5-female for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Muroran, Hokkaido, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Scytosiphon promiscuus

text: female

characteristic: sex

text: genetic cross, genome sequencing

characteristic: sex determination method

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Scytosiphon promiscuus strain 000310-Muroran-5-female.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Masakazu Hoshino

characteristic: collection date

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

text: Scytosiphon promiscuus

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Scytosiphon promiscuus strain 000310-Muroran-5-female for RNA-seq-based genome annotation.

text: coastal

text: Pacific Ocean

text: Muroran, Hokkaido, Japan

text: marine

text: Scytosiphon promiscuus

characteristic: sequencing centre sample code

text: female

text: genetic cross, genome sequencing

text: whole thallus

text: RNA extracted from Scytosiphon promiscuus strain 000310-Muroran-5-female.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Qiagen RNeasy kit with RLC buffer

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: missing: data agreement established pre-2023

text: gametophyte

text: Japan

text: Kazuhiro Kogame

text: Morphology, genome sequenced

characteristic: identification method

text: Scytosiphon promiscuus

text: haploid

characteristic: sample alias

text: RNA extracted from Scytosiphon promiscuus strain 990511-Asari-6-male for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Asari, Otaru, Hokkaido, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Scytosiphon promiscuus

text: male

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Scytosiphon promiscuus strain 990511-Asari-6-male.

characteristic: title


S.lom-GAfemale-C

text: Wild harvested material allowed to recover in Petri dish culture in Provasoli-enriched seawater after transport.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

text: 27/11/2019 (tube C)

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S.lom-GAfemale-C

characteristic: collection date

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

text: Scytosiphon promiscuus

characteristic: organism

text: haploid

characteristic: ploidy

text: S.lom-GAfemale-C

text: RNA extracted from Scytosiphon promiscuus strain GA Mistumatsu 9f for analysis of differential gene expression..

text: coastal

text: Pacific Ocean

text: Mistumatsu, Japan

text: marine

text: Scytosiphon promiscuus

characteristic: sequencing centre sample code

text: female

text: GA Mistumatsu 9f

text: whole thallus

text: RNA extracted from Scytosiphon promiscuus strain GA Mistumatsu 9f.


S.lom-GAfemale-D

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: 27/11/2019 (tube D)

text: Genoscope CEA

text: public

characteristic: SRA accession

text: S.lom-GAfemale-D

characteristic: Submitter Id

text: gametophyte

text: Japan

text: Kazuhiro Kogame

text: Morphology, genome sequenced

characteristic: identification method

text: Scytosiphon promiscuus

text: haploid

text: S.lom-GAfemale-D

characteristic: sample alias

text: RNA extracted from Scytosiphon promiscuus strain GA Mistumatsu 8f for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Mistumatsu, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Scytosiphon promiscuus

text: female

characteristic: sex

text: GA Mistumatsu 8f

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Scytosiphon promiscuus strain GA Mistumatsu 8f.

characteristic: title


S.lom-GAfemale-E

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: External Id

characteristic: Extraction date

text: 27/11/2019 (tube E)

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S.lom-GAfemale-E

characteristic: collection date

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

text: Scytosiphon promiscuus

characteristic: organism

text: haploid

characteristic: ploidy

text: S.lom-GAfemale-E

text: RNA extracted from Scytosiphon promiscuus strain GA Koinoura 7f for analysis of differential gene expression..

text: coastal

text: Pacific Ocean

text: Koinoura, Japan

text: marine

text: Scytosiphon promiscuus

characteristic: sequencing centre sample code

text: female

text: GA Koinoura 7f

text: whole thallus

text: RNA extracted from Scytosiphon promiscuus strain GA Koinoura 7f.


S.lom-GAmale-F

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: 27/11/2019 (tube F)

text: Genoscope CEA

text: public

characteristic: SRA accession

text: S.lom-GAmale-F

characteristic: Submitter Id

text: gametophyte

text: Japan

text: Kazuhiro Kogame

text: Morphology, genome sequenced

characteristic: identification method

text: Scytosiphon promiscuus

text: haploid

text: S.lom-GAmale-F

characteristic: sample alias

text: RNA extracted from Scytosiphon promiscuus strain GA Koinoura 11m for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Koinoura, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Scytosiphon promiscuus

text: male

characteristic: sex

text: GA Koinoura 11m

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Scytosiphon promiscuus strain GA Koinoura 11m.

characteristic: title


S.lom-GAmale-H

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: External Id

characteristic: Extraction date

text: 27/11/2019 (tube H)

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S.lom-GAmale-H

characteristic: collection date

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

text: Scytosiphon promiscuus

characteristic: organism

text: haploid

characteristic: ploidy

text: S.lom-GAmale-H

text: RNA extracted from Scytosiphon promiscuus strain GA Muroran 8mA for analysis of differential gene expression..

text: coastal

text: Pacific Ocean

text: Muroran, Hokkaido, Japan

text: marine

text: Scytosiphon promiscuus

characteristic: sequencing centre sample code

text: male

text: GA Muroran 8mA

text: whole thallus

text: RNA extracted from Scytosiphon promiscuus strain GA Muroran 8mA.


S.lom-GAmale-I

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: 27/11/2019 (tube I)

text: Genoscope CEA

text: public

characteristic: SRA accession

text: S.lom-GAmale-I

characteristic: Submitter Id

text: gametophyte

text: Japan

text: Kazuhiro Kogame

text: Morphology, genome sequenced

characteristic: identification method

text: Scytosiphon promiscuus

text: haploid

text: S.lom-GAmale-I

characteristic: sample alias

text: RNA extracted from Scytosiphon promiscuus strain GA Muroran 8mB for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Muroran, Hokkaido, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Scytosiphon promiscuus

text: male

characteristic: sex

text: GA Muroran 8mB

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Scytosiphon promiscuus strain GA Muroran 8mB.

characteristic: title


text: 140 mm Petri dish cultures in Provasoli-enriched seawater. Grown under 12:12h light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: External Id

characteristic: Extraction date

text: protocol HiC Pasteur

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

text: Scytosiphon promiscuus

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Scytosiphon promiscuus strain 990511-Asari-6-male for Hi-C analysis.

text: coastal

text: Pacific Ocean

text: Asari, Otaru, Hokkaido, Japan

text: marine

text: Scytosiphon promiscuus

text: male

text: whole thallus

text: DNA extracted from Scytosiphon promiscuus strain 990511-Asari-6-male.


text: 140 mm Petri dish cultures. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: missing: data agreement established pre-2023

text: sporophyte

text: Japan

text: Kazuhiro Kogame

text: Morphology, genome sequenced

characteristic: identification method

text: Scytosiphon promiscuus

text: diploid

characteristic: sample alias

text: RNA extracted from Scytosiphon promiscuus strain SXS107 (SXS103 x SXS105) for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Scytosiphon promiscuus

characteristic: sequencing centre sample code

characteristic: sex

text: SXS107 (SXS103 x SXS105)

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Scytosiphon promiscuus strain SXS107 (SXS103 x SXS105).

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

text: Scytosiphon promiscuus

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Pacific Ocean

text: Japan

text: marine

text: Scytosiphon promiscuus

text: SXS107 (SXS103 x SXS105)

text: whole thallus


text: Air-bubbled 2 L flask culture in Provasoli-enriched seawater at 20C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Gametophyte, probably derived from sporophyte strain Sph rig Cal Mo 3 SP. Sph rig Cal Mo 4-1-68b and Sph rig Cal Mo 4-1-G3b are sister and brother. Sampled before 2000.

characteristic: additional details

text: Birgit Stache-Crain

text: gametophyte

text: USA

text: Birgit Stache-Crain

text: Morphology, genome sequenced

characteristic: identification method

text: Sphacelaria rigidula

text: haploid

characteristic: sample alias

text: DNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-68b for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: California, USA

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphacelaria rigidula

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: Sph rig Cal Mo 4-1-68b

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-68b.

characteristic: title


text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Birgit Stache-Crain

characteristic: collection date

text: gametophyte

characteristic: generation

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Birgit Stache-Crain

characteristic: identification by

text: Morphology, genome sequenced

text: Sphacelaria rigidula

characteristic: organism

text: haploid

characteristic: ploidy

text: coastal

text: Pacific Ocean

text: California, USA

text: marine

text: Sphacelaria rigidula

text: female

text: Sph rig Cal Mo 4-1-68b

text: whole thallus


text: Air-bubbled 2 L flask culture in Provasoli-enriched seawater.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Birgit Stache-Crain

text: gametophyte

text: USA

text: Birgit Stache-Crain

text: Morphology, genome sequenced

characteristic: identification method

text: Sphacelaria rigidula

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: California, USA

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphacelaria rigidula

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: Sph rig Cal Mo 4-1-68b

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: 140 mm Petri dish cultures in Provasoli-enriched natural seawater. Grown under 12:12h white light at 13C. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep Gbioscience extraction of nuclei

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Birgit Stache-Crain

characteristic: collection date

text: gametophyte

characteristic: generation

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Birgit Stache-Crain

characteristic: identification by

text: Morphology, genome sequenced

text: Sphacelaria rigidula

characteristic: organism

text: haploid

characteristic: ploidy

text: coastal

text: Pacific Ocean

text: California, USA

text: marine

text: Sphacelaria rigidula

text: female

text: Sph rig Cal Mo 4-1-68b

text: whole thallus


text: Air-bubbled 2 L flask culture in Provasoli-enriched seawater plus antibiotics added 15 days before harvest.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: DNA_PHAEO215 (23/08/2019)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Birgit Stache-Crain

text: gametophyte

text: USA

text: Birgit Stache-Crain

text: Morphology, genome sequenced

characteristic: identification method

text: Sphacelaria rigidula

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: California, USA

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphacelaria rigidula

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: Sph rig Cal Mo 4-1-68b

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit with RLC buffer

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Birgit Stache-Crain

characteristic: collection date

text: gametophyte

characteristic: generation

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Birgit Stache-Crain

characteristic: identification by

text: Morphology, genome sequenced

text: Sphacelaria rigidula

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-68b for RNA-seq-based genome annotation.

text: coastal

text: Pacific Ocean

text: California, USA

text: marine

text: Sphacelaria rigidula

text: female

text: Sph rig Cal Mo 4-1-68b

text: whole thallus

text: RNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-68b.


text: Petri dish cultures in Provasoli-enriched seawater at 20C.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Qiagen RNeasy kit

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Birgit Stache-Crain

text: gametophyte

text: USA

text: Birgit Stache-Crain

text: Morphology, genome sequenced

characteristic: identification method

text: Sphacelaria rigidula

text: haploid

characteristic: sample alias

text: RNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-68b for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: California, USA

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphacelaria rigidula

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: Sph rig Cal Mo 4-1-68b

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Heterozygous sporophyte, parent of the strains Sph rig Cal Mo 4-1-G3b and Sph rig Cal Mo 4-1-68b, which are brother and sister, respectively. Sampled before 2000.

text: Birgit Stache-Crain

characteristic: collection date

text: sporophyte

characteristic: generation

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Birgit Stache-Crain

characteristic: identification by

text: Morphology, transcriptome sequenced

text: Sphacelaria rigidula

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Sphacelaria rigidula strain Srig cal mo SP for analysis of differential gene expression..

text: coastal

text: Pacific Ocean

text: California, USA

text: marine

text: Sphacelaria rigidula

text: Srig cal mo SP

text: whole thallus

text: RNA extracted from Sphacelaria rigidula strain Srig cal mo SP.


characteristic: Alternative strain name

text: Petri dish cultures in Provasoli-enriched seawater. Grown under 12:12h white light at 20C. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Qiagen RNeasy kit

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: Gametophyte, probably derived from sporophyte strain Sph rig Cal Mo 3 SP. Sph rig Cal Mo 4-1-G3b and Sph rig Cal Mo 4-1-68b are brother and sister. Sampled before 2000.

characteristic: additional details

text: Birgit Stache-Crain

text: missing: data agreement established pre-2023

text: gametophyte

text: USA

text: Birgit Stache-Crain

text: Morphology, genome sequenced

characteristic: identification method

text: Sphacelaria rigidula

text: haploid

characteristic: sample alias

text: RNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-G3b for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: California, USA

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphacelaria rigidula

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: Sph rig Cal Mo 4-1-G3b

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-G3b.

characteristic: title


characteristic: Alternative strain name

text: Cultured in Provasoli-enriched seawater (10% enrichment) at 20C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Birgit Stache-Crain

characteristic: collection date

text: gametophyte

characteristic: generation

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Birgit Stache-Crain

characteristic: identification by

text: Morphology, genome sequenced

text: Sphacelaria rigidula

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-G3b for genome sequencing.

text: coastal

text: Pacific Ocean

text: California, USA

text: marine

text: Sphacelaria rigidula

text: male

text: Sph rig Cal Mo 4-1-G3b

text: whole thallus

text: DNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-G3b.


characteristic: Alternative strain name

text: 140 mm Petri dish cultures in Provasoli-enriched seawater. Grown under 12:12h light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: Extraction date

text: protocol HiC Pasteur

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Birgit Stache-Crain

text: gametophyte

text: USA

text: Birgit Stache-Crain

text: Morphology, genome sequenced

characteristic: identification method

text: Sphacelaria rigidula

text: haploid

characteristic: sample alias

text: DNA extracted from Sphacelaria rigidula strain Sph rig Cal Mo 4-1-G3b for Hi-C analysis.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: California, USA

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphacelaria rigidula

text: male

characteristic: sex

text: Sph rig Cal Mo 4-1-G3b

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics (5 ml of the standard antibiotic mix per 1 L medium throughout the whole cultivation process, with replenishment at every medium change).

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Derived from a heterozygous, field-isolated sporophyte. Publication: Peters, A.F., Kawai, H. & Novaczek, I. 1993 Hydrobiologia 260/261, 31-36.

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Sphaerotrichia firma

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Sphaerotrichia firma strain ET2 F for genome sequencing.

text: coastal

text: Mediterranean Sea

text: Bouzigues, Etang de Thau, France

text: marine

text: Sphaerotrichia firma

characteristic: sequencing centre sample code

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: ET2 F

text: whole thallus

text: DNA extracted from Sphaerotrichia firma strain ET2 F.


text: 140 mm Petri dish cultures in Provasoli-enriched seawater. Grown under 12:12h white light at 13C. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: Qiagen RNeasy kit with RLC buffer

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: Derived from a heterozygous, field-isolated sporophyte collected by Hiroshi Kawai on 12-07-1988 at Oshoro, Hokkaido. Publications: Peters, A.F., Kawai, H. & Novaczek, I. 1993. Intraspecific sterility barrier confirms that introduction of Sphaerotrichia divaricata (Phaeophyceae, Chordariales) into the Mediterranean was from Japan. Proceedings of the 14th International Seaweed Symposium. Hydrobiologia 260/261: 31-36. Note that classification of this Sphaerotrichia entity in S. firma was only made later (Kim, S.-H., Peters, A.F. & Kawai, H. 2003. Taxonomic revision of Sphaerotrichia divaricata (Ectocarpales, Phaeophyceae), with a reappraisal of S. firma from the north-west Pacific. Phycologia 42:183-192.). Initially it was included in Sphaerotrichia divaricata.

characteristic: additional details

text: Hiroshi Kawai

text: gametophyte

text: Japan

text: Hiroshi Kawai

text: Morphology, genome sequenced

characteristic: identification method

text: Sphaerotrichia firma

text: haploid

characteristic: sample alias

text: RNA extracted from Sphaerotrichia firma strain SfirJ13m for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Oshoro, Hokkaido, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphaerotrichia firma

text: male

characteristic: sex

text: genetic cross, genome sequencing

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Sphaerotrichia firma strain SfirJ13m.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit with RLC buffer

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Sphaerotrichia firma

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Sphaerotrichia firma strain ET2 F for analysis of differential gene expression..

text: coastal

text: Mediterranean Sea

text: Bouzigues, Etang de Thau, France

text: marine

text: Sphaerotrichia firma

characteristic: sequencing centre sample code

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: ET2 F

text: whole thallus

text: RNA extracted from Sphaerotrichia firma strain ET2 F.


text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Hiroshi Kawai

text: gametophyte

text: Japan

text: Hiroshi Kawai

text: Morphology, genome sequenced

characteristic: identification method

text: Sphaerotrichia firma

text: haploid

characteristic: sample alias

text: DNA extracted from Sphaerotrichia firma strain SfirJ13m for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Oshoro, Hokkaido, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Sphaerotrichia firma

text: male

characteristic: sex

text: genetic cross, genome sequencing

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Sphaerotrichia firma strain SfirJ13m.

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: protocol HiC Pasteur

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hiroshi Kawai

characteristic: collection date

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Hiroshi Kawai

characteristic: identification by

text: Morphology, genome sequenced

text: Sphaerotrichia firma

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Sphaerotrichia firma strain SfirJ13m for Hi-C analysis.

text: coastal

text: Pacific Ocean

text: Oshoro, Hokkaido, Japan

text: marine

text: Sphaerotrichia firma

text: male

text: genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater. Grown under 12:12h white light at 20C. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: missing: data agreement established pre-2023

text: gametophyte

text: France

text: Undaria pinnatifida

text: haploid

characteristic: sample alias

text: DNA extracted from Undaria pinnatifida strain Un1m for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Saint Malo, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Undaria pinnatifida

characteristic: sequencing centre sample code

text: male

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Undaria pinnatifida strain Un1m.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit with RLC buffer improved protocol

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Undaria pinnatifida

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Undaria pinnatifida strain Un1m for RNA-seq-based genome annotation.

text: coastal

text: English Channel

text: Saint Malo, France

text: marine

text: Undaria pinnatifida

text: male

text: whole thallus

text: RNA extracted from Undaria pinnatifida strain Un1m.


text: No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Qiagen RNeasy kit plus clean-up

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: gametophyte

text: France

text: Undaria pinnatifida

text: haploid

characteristic: sample alias

text: RNA extracted from Undaria pinnatifida strain Un 1f for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Saint Malo, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Undaria pinnatifida

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: Un 1f

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Undaria pinnatifida strain Un 1f.

characteristic: title


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater. Grown under 12H:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Undaria pinnatifida

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Undaria pinnatifida strain Un 1f for genome sequencing.

text: coastal

text: English Channel

text: Saint Malo, France

text: marine

text: Undaria pinnatifida

text: female

text: Un 1f

text: whole thallus

text: DNA extracted from Undaria pinnatifida strain Un 1f.


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

text: Spain

text: Galicia | Pontevedra | Ria Pontevedra

characteristic: geographic location (region and locality)

text: estuarine-freshwater

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Xenostrobus securis

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Xenostrobus securis

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collection date

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Xsecuris 6

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

text: Spain

text: Galicia | Pontevedra | Ria Pontevedra

characteristic: geographic location (region and locality)

text: estuarine-freshwater

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Xenostrobus securis

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Xenostrobus securis

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Xsecuris 5

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collection date

text: Spain

text: Galicia | Pontevedra | Ria Pontevedra

text: estuarine-freshwater

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Xenostrobus securis

text: WHOLE ORGANISM

text: Xenostrobus securis

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Xsecuris 4

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Galicia | Pontevedra | Ria Pontevedra

characteristic: geographic location (region and locality)

text: estuarine-freshwater

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Xenostrobus securis

characteristic: organism

text: WHOLE ORGANISM

text: Xenostrobus securis

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Xsecuris 3

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: Spain

text: Galicia | Pontevedra | Ria Pontevedra

text: estuarine-freshwater

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Xenostrobus securis

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Xenostrobus securis

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Xsecuris 2

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: Spain

text: Galicia | Pontevedra | Ria Pontevedra

text: estuarine-freshwater

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Xenostrobus securis

text: WHOLE ORGANISM

text: Xenostrobus securis

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 1 tube6

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 1 tube5

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: GONAD

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 1 tube4

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: INTESTINE

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 1 tube3

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: MOLLUSC FOOT

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 1 tube2

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: GILL ANIMAL

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 1 tube1

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: **OTHER SOMATIC ANIMAL TISSUE**

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 2 tube6

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 2 tube5

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: GONAD

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 2 tube4

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: INTESTINE

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 2 tube3

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: MOLLUSC FOOT

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 2 tube2

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: GILL ANIMAL

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 2 tube1

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: **OTHER SOMATIC ANIMAL TISSUE**

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 3 tube6

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 3 tube5

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: GONAD

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 3 tube4

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: INTESTINE

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid