characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Peru

text: SA 235

characteristic: infraspecific name

text: WUR

text: Peru

characteristic: material source latitude

text: Capsicum pubescens

text: leaf

characteristic: plant anatomical entity

text: pubescens


status: PUBLIC

characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

text: Genomic DNA was extracted from 100 mg fresh leaf tissue collected from individual plants for each accession. DNA extraction was performed either with the DNeasy® Plant Mini Kit (QIAGEN), Germany) or the Sbeadex maxi plant kit (LGC Genomics), Teddington), UK).

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Romania

characteristic: geographic location (country and/or sea)

text: Galben Superior

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Romania

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

characteristic: organism

text: leaf

text: G2P-SOL - Linking genetic resources, genomes and phenotypes of Solanaceous crops

characteristic: project name

characteristic: sample id

text: annuum

characteristic: species


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Hungary

text: Ganti

characteristic: infraspecific name

text: WUR

text: Hungary

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Austria

text: Gelber Spiralformiger

text: WUR

text: Austria

text: Capsicum annuum

text: leaf

text: annuum


text: Germany

text: not collected

text: Capsicum

text: Italy

characteristic: geographic location (country and/or sea)

text: Gele Reuzen

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Italy

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

characteristic: organism

text: leaf

characteristic: project name

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: China

text: Gin Xiumhang

characteristic: infraspecific name

text: WUR

text: China

text: Capsicum annuum

text: leaf

characteristic: sample id

text: annuum

characteristic: species


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: USA

text: Golden California Wonder

text: WUR

text: USA

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Australia

characteristic: geographic location (country and/or sea)

text: Green King

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Australia

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

text: leaf

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: France

text: Gros Carre d'Amerique Ameliore

characteristic: infraspecific name

text: WUR

text: France

text: Capsicum annuum

characteristic: organism

text: leaf

characteristic: project name

text: annuum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Moldova

text: Grosser Gelber 903

text: WUR

text: Moldova

text: Capsicum annuum

text: leaf

characteristic: sample id

text: annuum

characteristic: species


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Ethiopia

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Denmark

text: Hammenhogs Jatte

characteristic: infraspecific name

text: WUR

text: Denmark

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

text: leaf

text: annuum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Hungary

text: Hatvani

text: WUR

text: Hungary

text: Capsicum annuum

characteristic: organism

text: leaf

characteristic: project name

text: annuum


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Japan

characteristic: geographic location (country and/or sea)

text: Hontaka

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Japan

text: Capsicum annuum

text: leaf

characteristic: sample id

text: annuum

characteristic: species


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Guatemala

text: LOCAL

characteristic: infraspecific name

text: WUR

text: Guatemala

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Guatemala

text: LOCAL

text: WUR

text: Guatemala

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum chinense

text: leaf

text: frutescens


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Hungary

characteristic: geographic location (country and/or sea)

text: Kovacshazi Hajtatasi

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Hungary

text: Capsicum annuum

characteristic: organism

text: leaf

characteristic: project name

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: USA

text: Large Red Cherry

characteristic: infraspecific name

text: WUR

text: USA

text: Capsicum annuum

text: leaf

characteristic: sample id

text: annuum

characteristic: species


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Italy

text: Lungo di Chivasso o Corno di Toro Giallo

text: WUR

text: Italy

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: USA

characteristic: geographic location (country and/or sea)

text: merrimack wonder

text: WUR

characteristic: material provider

characteristic: material source DOI

text: USA

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

text: leaf

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Peru

text: Omnicolor

characteristic: infraspecific name

text: WUR

text: Peru

text: Capsicum baccatum

characteristic: organism

text: leaf

characteristic: project name

text: baccatum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Netherlands

text: P 53

text: WUR

text: Netherlands

text: Capsicum annuum

text: leaf

characteristic: sample id

text: annuum

characteristic: species


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: USA

characteristic: geographic location (country and/or sea)

text: Peter Pepper

text: WUR

characteristic: material provider

characteristic: material source DOI

text: USA

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Hungary

text: Jubelee of Honor

characteristic: infraspecific name

text: WUR

text: Hungary

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

text: leaf

text: annuum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Iran

text: PI 140374

text: WUR

text: Iran

text: Capsicum annuum

characteristic: organism

text: leaf

characteristic: project name

text: annuum


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: China

characteristic: geographic location (country and/or sea)

text: Ta Pien Chiao

text: WUR

characteristic: material provider

characteristic: material source DOI

text: China

text: Capsicum annuum

text: leaf

characteristic: sample id

text: annuum

characteristic: species


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: India

text: PI 164678

characteristic: infraspecific name

text: WUR

text: India

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Turkey

text: PI 166988

text: WUR

text: Turkey

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

text: leaf

text: annuum


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Turkey

characteristic: geographic location (country and/or sea)

text: PI 169106

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Turkey

text: Capsicum annuum

characteristic: organism

text: leaf

characteristic: project name

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Bolivia

text: PI 213917

characteristic: infraspecific name

text: WUR

text: Bolivia

text: Capsicum chinense

text: leaf

characteristic: sample id

text: annuum

characteristic: species


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Argentina

text: PI 260453

text: WUR

text: Argentina

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: Italy

characteristic: geographic location (country and/or sea)

text: Picante Lungo

text: WUR

characteristic: material provider

characteristic: material source DOI

text: Italy

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum annuum

text: leaf

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: USA

text: PIP

characteristic: infraspecific name

text: WUR

text: USA

text: Capsicum annuum

characteristic: organism

text: leaf

characteristic: project name

text: annuum


characteristic: SRA accession

characteristic: Sample ID_G2P-Sol database

characteristic: Sample description

characteristic: biological material ID

text: Germany

characteristic: biological material latitude

text: not collected

text: Capsicum

text: Portugal

text: Quintal d'Alger

text: WUR

text: Portugal

text: Capsicum annuum

text: leaf

characteristic: sample id

text: annuum

characteristic: species


text: Germany

characteristic: biological material longitude

characteristic: biological material preprocessing

text: not collected

text: Capsicum

text: USA

characteristic: geographic location (country and/or sea)

text: Resistent Wonder Giant

text: WUR

characteristic: material provider

characteristic: material source DOI

text: USA

characteristic: material source latitude

text: Capsicum annuum

text: leaf

characteristic: plant anatomical entity

text: annuum


characteristic: biological material altitude

text: Germany

characteristic: biological material geographic location

text: not collected

characteristic: collection date

text: Capsicum

characteristic: genus

text: Peru

text: Miscucho colorado; 1 SCA no.6

characteristic: infraspecific name

text: WUR

text: Peru

characteristic: material source geographic location

characteristic: material source longitude

text: Capsicum chinense

text: leaf

text: chinense


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Tree of Life Programme

characteristic: Submitter Id

text: NICHOLAS TURNER

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

unit: m

characteristic: depth

text: USA

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida | Broward County

characteristic: geographic location (region and locality)

text: Nearshore hardbottom

characteristic: habitat

text: TIMOTHY SWAIN

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Zoanthus pulchellus

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Zoanthus pulchellus

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NICHOLAS TURNER

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

text: not collected

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Florida | Broward County

text: Nearshore hardbottom

text: NICHOLAS TURNER

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Palythoa grandis

text: WHOLE ORGANISM

text: ASG

text: Palythoa grandis

text: NOT COLLECTED

text: N


text: Nova Southeastern University

text: JoeLopez NSU22601

text: Tree of Life Programme

text: public

text: NICHOLAS TURNER

text: NOVA SOUTHEASTERN UNIVERSITY

text: not collected

characteristic: depth

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Florida | Broward County

characteristic: geographic location (region and locality)

text: Nearshore hardbottom

characteristic: habitat

text: NICHOLAS TURNER

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Palythoa grandis

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample symbiont of

text: Palythoa grandis

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: JoeLopez NSU22601

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NICHOLAS TURNER

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

text: not collected

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Florida | Broward County

text: Nearshore hardbottom

text: NICHOLAS TURNER

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Cladocopium sp. C1

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample derived from

text: Cladocopium sp. C1

text: NOT COLLECTED

text: Y

characteristic: tolid


characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: depth

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida|Broward County|Offshore Fort Lauderdale

characteristic: geographic location (region and locality)

text: Limestone ledge

characteristic: habitat

text: JOE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Cinachyrella kuekenthali

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Cinachyrella kuekenthali

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: Y, in ethanol

characteristic: specimen voucher

text: 7d7d9aca-b3eb-44a3-bbe4-20185d7c46e5-ASG-specimen

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: JOE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: Limestone ledge

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Cinachyrella kuekenthali

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample derived from

text: Cinachyrella kuekenthali

text: NOT COLLECTED

text: Y, in ethanol

text: N

characteristic: symbiont

text: 0780836c-ab4c-4329-bbef-83dad9a08ab7-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Geomar Helmholtz Centre

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: depth

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Limestone ledge

characteristic: habitat

text: JOE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Cinachyrella kuekenthali

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

text: Cinachyrella kuekenthali

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: Y, in ethanol

characteristic: specimen voucher

text: N

text: 8e8c7c0a-f41d-46e0-ac77-e990422c2f05-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: JOE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: Limestone ledge

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Cinachyrella kuekenthali

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample derived from

text: Cinachyrella kuekenthali

text: NOT COLLECTED

text: Y, in ethanol

text: N

characteristic: symbiont

text: f5aa26ef-f536-43d7-b180-948ad067206e-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Geomar Helmholtz Centre

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: depth

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Limestone ledge

characteristic: habitat

text: JOE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Cinachyrella kuekenthali

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

text: Cinachyrella kuekenthali

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: Y, in ethanol

characteristic: specimen voucher

text: N

text: f9429b0b-2d88-4789-85bf-4b47aed5e3cc-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: JOE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: Limestone ledge

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Cinachyrella kuekenthali

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample derived from

text: Cinachyrella kuekenthali

text: NOT COLLECTED

text: Y, in ethanol

text: N

characteristic: symbiont

text: 7a903238-89cf-4976-b5cb-3cf640ae0f58-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Geomar Helmholtz Centre

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: depth

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Limestone ledge

characteristic: habitat

text: JOE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Cinachyrella kuekenthali

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

text: Cinachyrella kuekenthali

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: Y, in ethanol

characteristic: specimen voucher

text: N

text: 33b7d042-6435-4e26-9e9e-72e0ed4c1367-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Geomar Helmholtz Centre

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: JOE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: Limestone ledge

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Cinachyrella kuekenthali

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: sample derived from

text: Cinachyrella kuekenthali

text: NOT COLLECTED

text: Y, in ethanol

text: N

characteristic: symbiont

text: fb419f4f-1c09-41c2-ae05-1837fded0c60-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Geomar Helmholtz Centre

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: JOE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: depth

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Limestone ledge

characteristic: habitat

text: JOE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Cinachyrella kuekenthali

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

text: Cinachyrella kuekenthali

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: Y, in ethanol

characteristic: specimen voucher

text: N

text: fede01f5-e247-4f60-bfc8-0c8230c9a0f7-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institut national de recherche en agriculture, alimentation et environnement (INRAE)

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

text: Protocols: Control and treated samples were collected at different time points (6 hours, 1-, 3- and 6-days) following the Aphanomyces euteiches. We collected three replicate samples for each time point, and each replicate was a pool of the nodules and denodulated roots of 3 plants. Medicago truncatula Jemalong A17 seeds were scarified, germinated as described in Lambert et al. (Lambert, I. et al. J Exp Bot 2020 - http://dx.doi.org/10.1093/jxb/eraa221). Individual plantlets were transferred into hydroponic culture tanks containing a vigorously aerated HY basal nutrient solution adjusted to 5.8 with KOH and supplemented with 1 mM KNO3. We cut the primary root tips of plantlets to promote branching of the root system. The culture chambers conditions were a light intensity of 250 μmol s−1 m−2 photosynthetically active radiation, relative humidity of 70%, a light/dark cycle of 16h/8h and an ambient temperature of 22°C/20°C. We separated the root systems of 4-week-old plants into two parts. The 3-week-old plants were transferred to a nutrient solution adjusted to pH7 supplemented with KNO3 0.5 mM containing the Sinorhizobium medicae md4 bacteria (107 cfu/ml). Typically, nodules appeared after 4 to 6 days and were functional after two weeks. After inoculation, nutrients solutions without mineral N supplement were renewed every week and adjusted to pH7. For split-root experiments, the root systems of 5-week-old plants were separated into two parts, each side being installed in a separate compartment filled with the same aerated nutrient solution. A 50 mL suspension containing 30.000 A. euteiches zoospores /mL, produced in Volvic water as previously described (Djébali et al. MPMI, 2009 - http://dx.doi.org/10.1094/MPMI-22-9-1043), was applied only onto the local compartment on each inoculated plants that were 44 days old. At the same time, we added 50 mL of Volvic water to mock-inoculated samples (controls). At first, grinding with mortar and pestle is carried out in liquid nitrogen to homogenise the sample. We took an aliquot of 200mg to extract RNAs using miRNeasy® Mini Kit (Qiagen, Venlo, Netherlands) according to the supplier's recommendations. RNAs concentration were measured using the NANODROP 1000 spectrometer (Thermo-Fisher Scientific, Waltham, Massachusetts, USA), and samples kept at -20°C. RNA integrity quality control was assessed using the BioAnalyser (BioRad Laboratories Inc., Hercules, California, USA). For each RNA extraction, polyadenylated plant mRNA libraries were generated and sequenced. Library preparation and sequencing were performed at the MGX-Montpellier GenomiX Facilities (Montpellier, France). Libraries for sequencing were prepared using the TruSeq Stranded mRNA Sample Preparation Kit (Illumina, San Diego, USA). Library quality was checked using the Standard Sensitivity NGS Kit on the Advanced Analytical Fragment Analyzer (Agilent Technologies, Inc., Santa Clara, California, USA), and concentration optimised, performing a qPCR (Light Cycler 480, Roche, Basel, Switzerland).

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 1 of nodules from 3 plants

characteristic: individual

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institut national de recherche en agriculture, alimentation et environnement (INRAE)

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 3 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root nodule

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 4 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

text: wild type genotype

text: pool 2 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 5 of nodules from 3 plants

characteristic: individual

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 6 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root nodule

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 7 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

text: wild type genotype

text: pool 8 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 9 of nodules from 3 plants

characteristic: individual

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 10 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root nodule

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 11 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

text: wild type genotype

text: pool 12 of nodules from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 1 of roots from 3 plants

characteristic: individual

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 2 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 3 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

text: wild type genotype

text: pool 4 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 5 of roots from 3 plants

characteristic: individual

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 6 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 7 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

text: wild type genotype

text: pool 8 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 9 of roots from 3 plants

characteristic: individual

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 10 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 11 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

text: wild type genotype

text: pool 12 of roots from 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 13 of nodules from 3 plants

characteristic: individual

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 15 of nodules from 3 plants

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root nodule

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 14 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 16 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 18 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 17 of nodules from 3 plants

characteristic: individual

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root nodule

characteristic: organism part

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 19 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

characteristic: common name

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 20 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 21 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

characteristic: genotype

text: pool 22 of nodules from 3 plants

characteristic: individual

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root nodule

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 23 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

characteristic: organism part

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 24 of nodules from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root nodule

text: Medicago truncatula

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

text: wild type genotype

text: pool 13 of roots from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 14 of roots from 3 plants

characteristic: individual

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 15 of roots from 3 plants

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 16 of roots from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 17 of roots from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: pool 18 of roots from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 19 of roots from 3 plants

characteristic: individual

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 20 of roots from 3 plants

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 21 of roots from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 22 of roots from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

characteristic: genotype

text: pool 23 of roots from 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 24 of roots from 3 plants

characteristic: individual

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: barrel medic

characteristic: common name

text: Protocols: Control and treated samples were collected at different time points (6 hours, 1-, 3- and 6-days) following the Aphanomyces euteiches. We collected three replicate samples for each time point, and each replicate was a pool of the roots of 3 plants. Medicago truncatula Jemalong A17 seeds were scarified, germinated as described in Lambert et al. (Lambert, I. et al. J Exp Bot 2020 - http://dx.doi.org/10.1093/jxb/eraa221). Individual plantlets were transferred into hydroponic culture tanks containing a vigorously aerated HY basal nutrient solution adjusted to 5.8 with KOH and supplemented with 1 mM KNO3. We cut the primary root tips of plantlets to promote branching of the root system. The culture chambers conditions were a light intensity of 250 μmol s−1 m−2 photosynthetically active radiation, relative humidity of 70%, a light/dark cycle of 16h/8h and an ambient temperature of 22°C/20°C. A 50 mL suspension containing 30.000 A. euteiches zoospores /mL, produced in Volvic water as previously described (Djébali et al. MPMI, 2009 - http://dx.doi.org/10.1094/MPMI-22-9-1043), was applied only onto the local compartment on each inoculated plants that were 44 days old. At the same time, we added 50 mL of Volvic water to mock-inoculated samples (controls). At first, grinding with mortar and pestle is carried out in liquid nitrogen to homogenise the sample. We took an aliquot of 200mg to extract RNAs using miRNeasy® Mini Kit (Qiagen, Venlo, Netherlands) according to the supplier's recommendations. RNAs concentration were measured using the NANODROP 1000 spectrometer (Thermo-Fisher Scientific, Waltham, Massachusetts, USA), and samples kept at -20°C. RNA integrity quality control was assessed using the BioAnalyser (BioRad Laboratories Inc., Hercules, California, USA). For each RNA extraction, polyadenylated plant mRNA libraries were generated and sequenced. Library preparation and sequencing were performed at the MGX-Montpellier GenomiX Facilities (Montpellier, France). Libraries for sequencing were prepared using the TruSeq Stranded mRNA Sample Preparation Kit (Illumina, San Diego, USA). Library quality was checked using the Standard Sensitivity NGS Kit on the Advanced Analytical Fragment Analyzer (Agilent Technologies, Inc., Santa Clara, California, USA), and concentration optimised, performing a qPCR (Light Cycler 480, Roche, Basel, Switzerland).

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 1 of 3 plants

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 2 of 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

characteristic: genotype

text: pool 3 of 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 4 of 3 plants

characteristic: individual

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 5 of 3 plants

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 6 of 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

characteristic: genotype

text: pool 7 of 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 8 of 3 plants

characteristic: individual

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 9 of 3 plants

text: Aphanomyces euteiches

characteristic: infect

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 10 of 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

characteristic: genotype

text: pool 11 of 3 plants

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 12 of 3 plants

characteristic: individual

text: Aphanomyces euteiches

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 13 of 3 plants

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 14 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

characteristic: genotype

text: pool 15 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 16 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 17 of 3 plants

characteristic: individual

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 19 of 3 plants

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 18 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

characteristic: genotype

text: pool 20 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: barrel medic

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 21 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

characteristic: developmental stage

text: Jemalong A17

characteristic: ecotype

text: wild type genotype

text: pool 22 of 3 plants

characteristic: individual

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: root

text: Medicago truncatula


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 23 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

characteristic: organism part

text: Medicago truncatula


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: barrel medic

text: sporophyte vegetative stage

text: Jemalong A17

text: wild type genotype

text: pool 24 of 3 plants

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:School of Life Sciences, Jilin University

characteristic: collection date

text: human

characteristic: common name

text: Here we present genomic data from 5 individuals dating to ca. 3000-2800 BCE from the Dzungarian Basin and 13 individuals dating to ca. 2100-1700 BCE from the Tarim Basin, representing the earliest yet discovered human remains from north and south Xinjiang, respectively. We find that the Early Bronze Age Dzungarian individuals exhibit a predominantly Afanasievo ancestry with an additional local contribution, while the Early-Middle Bronze Age Tarim individuals only harbor a local ancestry. Our results do not support previous hypotheses for the origin of the Tarim mummies, who were argued to be Proto-Tocharian speaking pastoralists descended from the Afanasievo or to have originated among the BMAC or IAMC cultures. Instead, although Tocharian may have been plausibly introduced to the Dzungarian Basin by Afanasievo migrants during the Early Bronze Age, we find that the earliest Tarim Basin cultures appear to have arisen from a genetically isolated local population that adopted neighboring pastoralist and agriculturalist practices, which allowed them to settle and thrive along the shifting riverine oases of the Taklamakan Desert.

text: terrestrial

characteristic: environment (biome)

text: basin

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: The genomic origins of the Bronze Age Tarim Basin mummies


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: School of Life Sciences, Jilin University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: description

text: terrestrial

text: basin

text: soil

text: China

text: human-associated

text: eukaryote

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina


characteristic: External Id

characteristic: INSDC center name

text: public

text: 11KBM1.merged.fixedHeader.rmdup.sorted.q30.bam

characteristic: collection date

text: human

characteristic: common name

text: terrestrial

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina X Ten

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: AYIM22BN.merged.fixedHeader.rmdup.sorted.q30.bam

text: human

text: terrestrial

text: lake

text: soil

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina X Ten

characteristic: sequencing method


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AYIM22BY.merged.fixedHeader.rmdup.sorted.q30.bam

characteristic: Submitter Id

text: human

characteristic: description

text: terrestrial

text: lake

text: soil

text: China

text: human-associated

text: eukaryote

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina X Ten


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: G218M5-2.merged.fixedHeader.rmdup.sorted.q30.bam

characteristic: collection date

text: human

characteristic: common name

text: terrestrial

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina X Ten

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: G218M5-3N.merged.fixedHeader.rmdup.sorted.q30.bam

text: human

text: terrestrial

text: lake

text: soil

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina X Ten

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GMGM1.merged.fixedHeader.rmdup.sorted.q30.bam

characteristic: Submitter Id

text: human

characteristic: description

text: terrestrial

text: lake

text: soil

text: China

text: human-associated

text: eukaryote

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina X Ten


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SSGM16.merged.fixedHeader.rmdup.sorted.q30.bam

characteristic: collection date

text: human

characteristic: common name

text: terrestrial

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina X Ten

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: XHM100.merged.fixedHeader.rmdup.sorted.q30.bam

text: human

text: terrestrial

text: lake

text: soil

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina X Ten

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: XHM110.merged.fixedHeader.rmdup.sorted.q30.bam

characteristic: Submitter Id

text: human

characteristic: description

text: terrestrial

text: lake

text: soil

text: China

text: human-associated

text: eukaryote

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina X Ten


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: XHM135.merged.fixedHeader.rmdup.sorted.q30.bam

characteristic: collection date

text: human

characteristic: common name

text: terrestrial

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina X Ten

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: XHM75.merged.fixedHeader.rmdup.sorted.q30.bam

text: human

text: terrestrial

text: lake

text: soil

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina X Ten

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRAE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: INRAE

text: Japanese quail

text: DNA

characteristic: description

text: adult

text: high-salt extraction method

text: Leroux S.

characteristic: host scientific name

text: GenPhySE

text: pool

characteristic: mode

text: Coturnix japonica

characteristic: organism

text: DI

characteristic: phenotype

text: Coturnix japonica

text: both

characteristic: sex

text: blood


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

characteristic: INSDC center name

text: public

text: INRAE

text: Japanese quail

characteristic: common name

text: DNA

text: adult

text: high-salt extraction method

text: Leroux S.

text: GenPhySE

text: individual

text: Coturnix japonica

text: Cu

text: Coturnix japonica

text: Female

text: blood

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRAE

text: public

text: INRAE

text: Japanese quail

text: DNA

text: adult

text: high-salt extraction method

text: Leroux S.

text: GenPhySE

text: individual

text: Coturnix japonica

text: WE

text: Coturnix japonica

text: Female

text: blood


text: INRAE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: INRAE

text: Japanese quail

text: DNA

text: adult

text: high-salt extraction method

text: Leroux S.

text: GenPhySE

text: individual

text: Coturnix japonica

text: Ce

text: Coturnix japonica

text: Female

text: blood


text: INRAE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: INRAE

text: Japanese quail

text: DNA

text: adult

text: high-salt extraction method

text: Leroux S.

text: GenPhySE

text: individual

text: Coturnix japonica

text: Ru

text: Coturnix japonica

text: Female

text: blood


text: public

tag: Namespace:Institute for Biostatistics and Informatics in Medicine and Ageing Research (IBIMA)

characteristic: Submitter Id

text: human

text: Host control samples

characteristic: description

text: Detroit 562

characteristic: host cell line

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: in vitro

characteristic: setup

text: Human control samples (replicate 1)


text: Institute for Biostatistics and Informatics in Medicine and Ageing Research (IBIMA)

text: public

text: human

text: Host control samples

text: Detroit 562

text: Homo sapiens

characteristic: host scientific name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: in vitro

text: Human control samples (replicate 2)


characteristic: ENA-LAST-UPDATE

text: public

text: human

text: Host control samples

text: Detroit 562

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: in vitro

text: Human control samples (replicate 3)


characteristic: External Id

text: public

text: human

text: Host infected samples by GAS AP1

text: Detroit 562

text: Homo sapiens

text: 2h (37 *C, 5% CO2)

characteristic: infection incubation

text: Homo sapiens

text: Streptococcus pyogenes (GAS)

characteristic: pathogen scientific name

characteristic: pathogen strain

text: Homo sapiens

text: in vitro

text: GAS AP1 infected samples (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Host infected samples by GAS AP1

text: Detroit 562

text: Homo sapiens

text: 2h (37 *C, 5% CO2)

text: Homo sapiens

text: Streptococcus pyogenes (GAS)

text: Homo sapiens

text: in vitro

text: GAS AP1 infected samples (replicate 2)

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Host infected samples by GAS AP1

text: Detroit 562

text: Homo sapiens

text: 2h (37 *C, 5% CO2)

text: Homo sapiens

text: Streptococcus pyogenes (GAS)

text: Homo sapiens

text: in vitro

text: GAS AP1 infected samples (replicate 3)


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Host infected samples by GAS 591

characteristic: description

text: Detroit 562

characteristic: host cell line

text: Homo sapiens

text: 2h (37 *C, 5% CO2)

text: Homo sapiens

text: Streptococcus pyogenes (GAS)

text: Homo sapiens

text: in vitro

text: GAS 591 infected samples (replicate 1)


characteristic: ENA-LAST-UPDATE

text: public

text: human

text: Host infected samples by GAS 591

text: Detroit 562

text: Homo sapiens

characteristic: host scientific name

text: 2h (37 *C, 5% CO2)

text: Homo sapiens

characteristic: organism

text: Streptococcus pyogenes (GAS)

text: Homo sapiens

text: in vitro

characteristic: setup

text: GAS 591 infected samples (replicate 2)


characteristic: External Id

text: public

text: human

text: Host infected samples by GAS 591

text: Detroit 562

text: Homo sapiens

text: 2h (37 *C, 5% CO2)

characteristic: infection incubation

text: Homo sapiens

text: Streptococcus pyogenes (GAS)

characteristic: pathogen scientific name

characteristic: pathogen strain

text: Homo sapiens

text: in vitro

text: GAS 591 infected samples (replicate 3)


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Host infected samples by IAV

text: Detroit 562

text: Homo sapiens

text: 48h (37 *C, 5% CO2)

text: Homo sapiens

text: Influenza A virus (IAV)

text: H1N1 (A/Bavaria/74/2009)

text: Homo sapiens

text: in vitro

text: Influenza A virus infected samples (replicate 1)

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Host infected samples by IAV

text: Detroit 562

text: Homo sapiens

text: 48h (37 *C, 5% CO2)

text: Homo sapiens

text: Influenza A virus (IAV)

text: H1N1 (A/Bavaria/74/2009)

text: Homo sapiens

text: in vitro

text: Influenza A virus infected samples (replicate 2)


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Host infected samples by IAV

characteristic: description

text: Detroit 562

characteristic: host cell line

text: Homo sapiens

text: 48h (37 *C, 5% CO2)

text: Homo sapiens

text: Influenza A virus (IAV)

text: H1N1 (A/Bavaria/74/2009)

text: Homo sapiens

text: in vitro

text: Influenza A virus infected samples (replicate 3)


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF EXETER

text: public

tag: Namespace:UNIVERSITY OF EXETER

text: WGS data of sequenced clones that show a surface-mutation phenotype and are resistant to phage DMS3vir.

text: Pseudomonas aeruginosa UCBPP-PA14

characteristic: organism

text: Pseudomonas aeruginosa UCBPP-PA14

text: single infection WGS clone S1


characteristic: External Id

text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: single infection WGS clone S2


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: single infection WGS clone S3


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: single infection WGS clone S4


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: single infection WGS clone S5


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: single infection WGS clone S6


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: ten day reinfection WGS clone T1


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: ten day reinfection WGS clone T2


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: ten day reinfection WGS clone T3


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: ten day reinfection WGS clone T4


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: ten day reinfection WGS clone T5


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: ten day reinfection WGS clone T6


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D1


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D2


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D3


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D4


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D5


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D6


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D7


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D8


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D9


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D10


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D11


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: daily reinfection WGS clone D12


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F1


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F2


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F3


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F4


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F5


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F6


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F7


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F8


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F9


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F10


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F11


text: UNIVERSITY OF EXETER

text: public

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: five day reinfection WGS clone F12


ANC

text: UNIVERSITY OF EXETER

text: public

text: ANC

text: WGS data of sequenced clone does not show surface-mutation phenotype and is not resistant to phage DMS3vir.

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: Ancestral lab strain of PA14


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

tag: Namespace:CENTER FOR GENOMIC REGULATION (CRG)

text: Nano3P-seq of Curlcakes

text: synthetic construct

text: synthetic construct

text: Curlcakes


Mouse Brain/Mitochondrial enriched

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: Mouse Brain/Mitochondrial enriched

text: house mouse

text: Nano3P-seq of Mouse Brain/Mitochondrial enriched spiked in with sequins

text: Mus musculus

text: Mus musculus

text: Mouse Brain/Mitochondrial enriched


Zebrafish Ribodep Rep1

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: Zebrafish Ribodep Rep1

text: zebrafish

text: Zebrafish Nano3P-seq of Ribodepleted sample biological replicate 1 including 2,4,6 hours post fertilization RNAs

text: Danio rerio

text: Danio rerio

text: Zebrafish Ribodep Rep1


Zebrafish Ribodep Rep2

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: Zebrafish Ribodep Rep2

text: zebrafish

text: Danio rerio

text: Danio rerio

text: Zebrafish Ribodep Rep2


Zebrafish PolyA 4 hpf

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: Zebrafish PolyA 4 hpf

text: zebrafish

text: Zebrafish Nano3P-seq of PolyA selected sample biological replicate 1 including 4 hours post fertilisation RNA

text: Danio rerio

text: Danio rerio

text: Zebrafish PolyA 4 hpf


Yeast

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: Yeast

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Yeast


text: MURDOCH UNIVERSITY

text: public

tag: Namespace:MURDOCH UNIVERSITY

characteristic: collection date

text: Adult

text: Temperate Broadleaf and Mixed Fores

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: Tick sample

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tiliqua rugosa

characteristic: host scientific name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Amblyomma albolimbatum

text: Bacterial community profiling of Western Australia Bobtail Lizard (Tiliqua Rugosa) ticks

characteristic: project name

text: Amblyomma albolimbatum

text: Illumina MiSeq

characteristic: sequencing method

text: Female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: Adult

text: Temperate Broadleaf and Mixed Fores

text: animal-associated habitat

text: Tick sample

text: Australia

text: Tiliqua rugosa

text: host-associated

text: mimarks-survey

text: Amblyomma albolimbatum

text: Amblyomma albolimbatum

text: Illumina MiSeq

text: Male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

text: public

characteristic: collection date

text: Larva

text: Temperate Broadleaf and Mixed Fores

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: Tick sample

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tiliqua rugosa

text: host-associated

text: mimarks-survey

text: Amblyomma albolimbatum

characteristic: organism

text: Amblyomma albolimbatum

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Nymph

text: Temperate Broadleaf and Mixed Fores

text: animal-associated habitat

text: Tick sample

text: Australia

text: Tiliqua rugosa

characteristic: host scientific name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Amblyomma albolimbatum

characteristic: project name

text: Amblyomma albolimbatum

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Adult

text: Temperate Broadleaf and Mixed Fores

characteristic: environment (biome)

text: animal-associated habitat

text: Tick sample

text: Australia

text: Tiliqua sp.

text: host-associated

text: mimarks-survey

text: Amblyomma albolimbatum

text: Amblyomma albolimbatum

text: Illumina MiSeq

text: Male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Adult

text: Temperate Broadleaf and Mixed Fores

text: animal-associated habitat

characteristic: environment (feature)

text: Tick sample

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tiliqua sp.

text: host-associated

text: mimarks-survey

text: Amblyomma albolimbatum

characteristic: organism

text: Amblyomma albolimbatum

text: Illumina MiSeq

text: Female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Adult

text: Temperate Broadleaf and Mixed Fores

text: animal-associated habitat

text: Tick sample

text: Australia

text: Tiquila rugosa

characteristic: host scientific name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Amblyomma albolimbatum

characteristic: project name

text: Amblyomma albolimbatum

text: Illumina MiSeq

characteristic: sequencing method

text: Female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Adult

text: Temperate Broadleaf and Mixed Fores

characteristic: environment (biome)

text: animal-associated habitat

text: Tick sample

text: Australia

text: Tiquila rugosa

text: host-associated

text: mimarks-survey

text: Amblyomma albolimbatum

text: Amblyomma albolimbatum

text: Illumina MiSeq

text: Male

characteristic: title


Zebrafish 4hpf dRNA1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CENTER FOR GENOMIC REGULATION (CRG)

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Zebrafish 4hpf dRNA1

text: zebrafish

characteristic: common name

text: PolyA selected dRNA sequenced zebrafish 4hpf RNA

text: Danio rerio

characteristic: organism

text: Danio rerio

text: Zebrafish 4hpf dRNA


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: UNIVERSITY OF OXFORD

characteristic: barcoding center

text: COPO

characteristic: broker name

text: Kilias

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Oxford|Zoology Department

characteristic: geographic location (region and locality)

text: Freshwater

characteristic: habitat

text: Thomas

characteristic: identified by

text: CCAP

text: vegetative cell

characteristic: lifestage

text: Nitzschia sp. CCAP1052/23

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: UK | Scotland| Argyll | Bonawe | Kenmore Cottage Pond

characteristic: original collection location

text: DTOL

characteristic: project name

characteristic: proxy voucher

characteristic: proxy voucher url

text: NOT PROVIDED

characteristic: sample collection device or method

text: Nitzschia sp. CCAP1052/23

characteristic: specimen id

characteristic: specimen voucher url

text: b780193b-0732-4761-9187-f06055594ead-DTOL-specimen

characteristic: tolid

characteristic: voucher institution url

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:BOEHRINGER INGELHEIM PHARMA GMBH & CO KG

characteristic: Submitter Id

text: house mouse

characteristic: common name

characteristic: description

text: NC

characteristic: group

text: Acute

characteristic: model

text: Mus musculus

characteristic: organism

text: BALF

text: Mus musculus

text: Female

characteristic: sex

text: Air

characteristic: stimulus

characteristic: strain

text: BALF

characteristic: title

text: Solvent

characteristic: treatment

text: 18-23 g

characteristic: weight