characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 0: no cestode

text: Size class: Medium

text: Salmo salar

text: gastrointestinal tract

text: AACTGTGC;AACTGTGG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F300

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UPPSALA UNIVERSITY

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

text: Norway

unit: DD

text: intestinal epithelium

text: Atlantic salmon

characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

unit: cm

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

unit: g

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: CTCACTGC;CTCACTGG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: fish gut metagenome

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characteristic: pcr primers

text: HoloFish

characteristic: project name

text: fish gut metagenome

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text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut mucosa from F316


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: animal-associated environment

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characteristic: collection date

text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 2: moderate cestode load

text: Size class: Small

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text: gastrointestinal tract

text: GTGCTACT;GTGCTACT

text: 1X Shield buffer Zymo Research

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characteristic: organism

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text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F318

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

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text: 1X Shield buffer Zymo Research

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text: Salmon gut mucosa from F322


characteristic: ENA-CHECKLIST

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text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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characteristic: SRA accession

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text: animal-associated environment

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characteristic: collection date

text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Small

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text: gastrointestinal tract

text: CATCATCT;CATCATCT

text: 1X Shield buffer Zymo Research

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text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F323

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

text: Norway

text: intestinal epithelium

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characteristic: host diet

text: index 2: moderate cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

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characteristic: host subject id

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text: gastrointestinal tract

characteristic: local environmental context

text: TGCTACTC;TGCTACTG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

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text: Salmon gut mucosa from F326


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: animal-associated environment

characteristic: broad-scale environmental context

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text: 16S metabarcoding of salmon gut mucosa

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text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 0: no cestode

text: Size class: Large

text: Salmo salar

text: gastrointestinal tract

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text: 1X Shield buffer Zymo Research

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text: MiSeq

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

text: Norway

text: intestinal epithelium

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characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

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text: Size class: Small

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text: 1X Shield buffer Zymo Research

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text: Salmon gut mucosa from F340


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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characteristic: SRA accession

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text: animal-associated environment

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text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

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text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 2: moderate cestode load

text: Size class: Small

text: Salmo salar

text: gastrointestinal tract

text: CCTTAGAC;CCTTAGAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

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text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F349

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

text: Norway

text: intestinal epithelium

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characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

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text: Size class: Medium

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

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text: gastrointestinal tract

characteristic: local environmental context

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text: 1X Shield buffer Zymo Research

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characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut mucosa from F355


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 0: no cestode

text: Size class: Small

text: Salmo salar

text: gastrointestinal tract

text: CAAGAGAC;CAAGAGAC

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F365

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

text: Norway

text: intestinal epithelium

text: Atlantic salmon

characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Medium

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

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text: gastrointestinal tract

characteristic: local environmental context

text: GCTTGACC;GCTTGACG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

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characteristic: pcr primers

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characteristic: project name

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characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut mucosa from F377


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Small

text: Salmo salar

text: gastrointestinal tract

text: GTAGAGAC;GTAGAGAC

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F383

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

text: Norway

text: intestinal epithelium

text: Atlantic salmon

characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Large

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: CATCATCT;CATCATCT

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

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characteristic: pcr primers

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characteristic: project name

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characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut mucosa from F389


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 1: low cestode load

text: Size class: Small

text: Salmo salar

text: gastrointestinal tract

text: TCGTACAG;TCGTACAG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F399

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: animal-associated environment

text: 16S metabarcoding of salmon gut mucosa

text: gut mucosa

text: Norway

text: intestinal epithelium

text: Atlantic salmon

characteristic: host diet

text: index 1: low cestode load

characteristic: host disease status

characteristic: host length

text: Size class: Small

characteristic: host phenotype

text: Salmo salar

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: gastrointestinal tract

characteristic: local environmental context

text: TCACAGGT;TCACAGGT

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

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text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

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characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Salmon gut mucosa from F410


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: animal-associated environment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon gut mucosa

characteristic: description

text: gut mucosa

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: intestinal epithelium

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: index 2: moderate cestode load

text: Size class: Large

text: Salmo salar

text: gastrointestinal tract

text: GATCGAGC;GATCGAGG

text: 1X Shield buffer Zymo Research

text: fish gut metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: fish gut metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Salmon gut mucosa from F416

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: laboratory environment

text: 16S metabarcoding of negative control containing 1X Shield buffer

text: sterile water

text: Norway

text: laboratory environment

characteristic: local environmental context

text: TGCTACTC;TGCTACTG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Negative blank control Ext1 from gut content extraction batch


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: laboratory environment

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: description

text: sterile water

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: laboratory environment

text: AGAAGTGT;AGAAGTGT

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Negative blank control Ext2 from gut content extraction batch


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: laboratory environment

text: sterile water

text: Norway

text: laboratory environment

characteristic: local environmental context

text: TGCTACTC;TGCTACTG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Negative blank control Ext1 from gut mucosa extraction batch

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: laboratory environment

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: description

text: sterile water

text: Norway

text: laboratory environment

text: AGAAGTGT;AGAAGTGT

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Negative blank control Ext2 from gut mucosa extraction batch


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: ACTCTCTC;ACTCTCTG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed1 pellet sample replicate 1


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

text: animal feed

text: TCAGTCTC;TCAGTCTC

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed1 pellet sample replicate 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: CGCTACTC;CGCTACTG

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Feed1 pellet sample replicate 3


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: GTAGAGAC;GTAGAGAC

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed1 pellet sample replicate 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: GTTGACTC;GTTGACTG

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed1 pellet sample replicate 5

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: CAAGGAAT;CAAGGAAT

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Feed1 pellet sample replicate 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: TAACCGAC;TAACCGAG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed1 pellet sample replicate 7


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: AGAAGGTC;AGAAGGTC

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed1 pellet sample replicate 8

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: AACTGTGC;AACTGTGG

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Feed1 pellet sample replicate 9


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: TCGTACAG;TCGTACAG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed1 pellet sample replicate 10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: CTCACTGC;CTCACTGG

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed2 pellet sample replicate 1

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: GTGCTACT;GTGCTACT

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Feed2 pellet sample replicate 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: GCTTGACC;GCTTGACG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed2 pellet sample replicate 3


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: CATCATCT;CATCATCT

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed2 pellet sample replicate 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: TGCTACTC;TGCTACTG

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Feed2 pellet sample replicate 5


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: AGAAGTGT;AGAAGTGT

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed2 pellet sample replicate 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: AGTGTCAC;AGTGTCAG

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed2 pellet sample replicate 7

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: TCACAGGT;TCACAGGT

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

characteristic: sequencing method

text: 16S ribosomal RNA gene

characteristic: target gene

characteristic: target subfragment

text: Feed2 pellet sample replicate 8


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquaculture farm

text: 16S metabarcoding of salmon feed pellet

characteristic: diet

text: animal feed

characteristic: environmental medium

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: animal feed

text: CCTTAGAC;CCTTAGAG

characteristic: multiplex identifiers

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

characteristic: organism

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

text: HoloFish

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed2 pellet sample replicate 9


text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: aquaculture farm

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S metabarcoding of salmon feed pellet

characteristic: description

text: animal feed

text: Norway

characteristic: geographic location (longitude)

text: animal feed

characteristic: local environmental context

text: GTAAGGTC;GTAAGGTC

text: 1X Shield buffer Zymo Research

text: metagenome

text: CTANGGGNNGCANCAG;GACTACNNGGGTATCTAAT

characteristic: pcr primers

text: HoloFish

characteristic: project name

text: metagenome

text: MiSeq

text: 16S ribosomal RNA gene

text: Feed2 pellet sample replicate 10

characteristic: title


name: SAMIN0004119-Whole genome resequencing of Indian rice germplasm

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Vikas Kumar Singh, Pallavi Sinha, Uma Maheshwar Singh, Anoop Kishor Singh Gurjar, Somali Vijay Habde

text: IBDC

characteristic: broker name

text: Asian cultivated rice

characteristic: common name

text: Contains Indian landraces farmer varieties, high yielding varieties and breeding lines.

text: India

characteristic: geographic location (country and/or sea)

text: Oryza sativa

text: Oryza sativa

text: Leaf

text: leaf


name: SAMIN0004120-Whole genome resequencing of Indian rice germplasm

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Vikas Kumar Singh, Pallavi Sinha, Uma Maheshwar Singh, Anoop Kishor Singh Gurjar, Somali Vijay Habde, IRRI South Asia Regional Center, Varanasi, India

characteristic: Submitter Id

text: IBDC

text: Asian cultivated rice

text: India

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: Leaf


E-MTAB-13546:Sample 1

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 1

tag: Namespace:University of Southern California

text: less than 1

unit: month

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

text: Protocols: RNA collection was performed by removing growth medium and washing 1x with PBS, then adding Trizol directly to cells, cell + trizol was frozen in -80C until extraction was performed. Cells were grown in high glucose DMEM + 10%FBS + 1x pen/strep at 5% CO2 37°C. Drugs were diluted in growth medium, which was applied directly to cells for 1 hrs prior to sample collection. After the final thaw, chloroform was added at a 1:5 chlorform/trizol ratio and aqueous separation of RNA was performed via centrifugation in a heavy gel phase-lock tube (VWR, 10847-802). The aqueous phase was mixed 1:1 with isopropanol then applied to a Qiagen RNeasy Mini Kit (74106) and RNA purification was performed as per manufacturer’s directions. Library construction was performed by Novogene using their standard pipeline.

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 1


E-MTAB-13546:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 10

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 10

characteristic: title


E-MTAB-13546:Sample 11

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 11

characteristic: Submitter Id

text: less than 1

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 11


E-MTAB-13546:Sample 12

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 12

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 12


E-MTAB-13546:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 13

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 13

characteristic: title


E-MTAB-13546:Sample 14

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 14

characteristic: Submitter Id

text: less than 1

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 14


E-MTAB-13546:Sample 15

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 15

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 15


E-MTAB-13546:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 16

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 16

characteristic: title


E-MTAB-13546:Sample 17

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 17

characteristic: Submitter Id

text: less than 1

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 17


E-MTAB-13546:Sample 18

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 18

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 18


E-MTAB-13546:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 19

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 19

characteristic: title


E-MTAB-13546:Sample 2

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 2

characteristic: Submitter Id

text: less than 1

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 2


E-MTAB-13546:Sample 20

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 20

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 20


E-MTAB-13546:Sample 21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 21

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 21

characteristic: title


E-MTAB-13546:Sample 22

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 22

characteristic: Submitter Id

text: less than 1

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 22


E-MTAB-13546:Sample 23

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 23

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 23


E-MTAB-13546:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 24

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 24

characteristic: title


E-MTAB-13546:Sample 25

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 25

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 25


E-MTAB-13546:Sample 26

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 26

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 26


E-MTAB-13546:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 27

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 27

characteristic: title


E-MTAB-13546:Sample 28

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 28

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 28


E-MTAB-13546:Sample 29

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 29

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 29


E-MTAB-13546:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 3

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-13546:Sample 30

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 30

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 30


E-MTAB-13546:Sample 31

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 31

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 31


E-MTAB-13546:Sample 32

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 32

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 32

characteristic: title


E-MTAB-13546:Sample 33

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 33

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 33


E-MTAB-13546:Sample 34

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 34

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 34


E-MTAB-13546:Sample 35

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 35

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 35

characteristic: title


E-MTAB-13546:Sample 36

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 36

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 36


E-MTAB-13546:Sample 37

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 37

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 37


E-MTAB-13546:Sample 38

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 38

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 38

characteristic: title


E-MTAB-13546:Sample 39

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 39

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 39


E-MTAB-13546:Sample 4

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 4

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 4


E-MTAB-13546:Sample 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 40

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 40

characteristic: title


E-MTAB-13546:Sample 41

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 41

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 41


E-MTAB-13546:Sample 42

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 42

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 42


E-MTAB-13546:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 43

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 43

characteristic: title


E-MTAB-13546:Sample 44

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 44

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 44


E-MTAB-13546:Sample 45

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 45

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 45


E-MTAB-13546:Sample 46

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 46

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: not collected

text: human

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 46

characteristic: title


E-MTAB-13546:Sample 47

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 47

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: hepatocyte

text: not collected

text: human

characteristic: common name

text: adult

text: adult hepatocellular carcinoma

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 47


E-MTAB-13546:Sample 48

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 48

text: ArrayExpress

text: hepatocyte

text: not collected

characteristic: collection date

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adult hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: Sample 48


E-MTAB-13546:Sample 49

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 49

text: 1 of adulthood

unit: day

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: For RNA isolation, all RNA collection was performed at day 2 of adulthood. ~1000 animals were harvested from RNAi plates using M9. Animals were pelleted by gravity by allowing adult worms to settle to the bottom of the tube and aspirating off eggs and L1. Animals were washed and gravity settled 3x to remove a majority of progeny, then animals were placed into Trizol solution and worms were freeze/thawed 3x with liquid nitrogen with a 30 sec vortexing step between each freeze cycle. RNA collection was performed by removing growth medium and washing 1x with PBS, then adding Trizol directly to cells, cell + trizol was frozen in -80C until extraction was performed. Standard bleaching protocol was used to synchronize animal populations. Animals were L1 arrested for a maximum of 16 hours to further synchronize populations. Animals were grown on RNAi indicated from L1 until Day 1 of adulthood and material was collected on Day 2. Treatment was performed by adding drug directly into NGM+agar plates and animals were applied to drugs at Day 1 of adulthood. Sample collection was on D2 (24 hours of treatment). After the final thaw, chloroform was added at a 1:5 chlorform/trizol ratio and aqueous separation of RNA was performed via centrifugation in a heavy gel phase-lock tube (VWR, 10847-802). The aqueous phase was mixed 1:1 with isopropanol then applied to a Qiagen RNeasy Mini Kit (74106) and RNA purification was performed as per manufacturer’s directions. Library construction was performed by Novogene using their standard pipeline.

text: adult

text: not available

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Sample 49

characteristic: title


E-MTAB-13546:Sample 5

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 5

characteristic: Submitter Id

text: less than 1

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 5


E-MTAB-13546:Sample 50

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 50

text: 1 of adulthood

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: adult

characteristic: developmental stage

text: not available

characteristic: disease

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

characteristic: replicate

text: Caenorhabditis elegans

text: Sample 50


E-MTAB-13546:Sample 51

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 51

text: 1 of adulthood

text: ArrayExpress

characteristic: broker name

text: not collected

text: adult

text: not available

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Sample 51

characteristic: title


E-MTAB-13546:Sample 52

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 52

characteristic: Submitter Id

text: 1 of adulthood

characteristic: age

text: ArrayExpress

text: not collected

text: adult

text: not available

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Sample 52


E-MTAB-13546:Sample 53

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 53

text: 1 of adulthood

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: adult

characteristic: developmental stage

text: not available

characteristic: disease

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

text: Sample 53


E-MTAB-13546:Sample 54

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13546:Sample 54

text: 1 of adulthood

text: ArrayExpress

text: not collected

text: adult

text: not available

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: replicate

text: Caenorhabditis elegans

text: Sample 54


E-MTAB-13546:Sample 55

text: University of Southern California

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 55

characteristic: Submitter Id

text: 1 of adulthood

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: adult

text: not available

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Sample 55

characteristic: title


E-MTAB-13546:Sample 56

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 56

text: 1 of adulthood

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: adult

characteristic: developmental stage

text: not available

characteristic: disease

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Sample 56


E-MTAB-13546:Sample 57

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

text: public

text: E-MTAB-13546:Sample 57

text: 1 of adulthood

text: ArrayExpress

text: not collected

text: adult

text: not available

text: not collected

text: not applicable

characteristic: isolate

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

text: Sample 57


E-MTAB-13546:Sample 58

text: University of Southern California

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 58

characteristic: Submitter Id

text: 1 of adulthood

characteristic: age

text: ArrayExpress

text: not collected

text: adult

text: not available

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: replicate

text: Caenorhabditis elegans

text: Sample 58


E-MTAB-13546:Sample 59

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 59

text: 1 of adulthood

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

characteristic: description

text: adult

characteristic: developmental stage

text: not available

characteristic: disease

characteristic: genotype

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Sample 59

characteristic: title


E-MTAB-13546:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

text: public

text: E-MTAB-13546:Sample 6

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 6


E-MTAB-13546:Sample 60

text: University of Southern California

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 60

characteristic: Submitter Id

text: 1 of adulthood

characteristic: age

text: ArrayExpress

text: not collected

text: adult

text: not available

text: not collected

text: not applicable

characteristic: isolate

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

text: Sample 60


E-MTAB-13546:Sample 7

text: University of Southern California

text: public

text: E-MTAB-13546:Sample 7

text: less than 1

text: ArrayExpress

characteristic: broker name

text: BJ

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: infant

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: replicate

text: Homo sapiens

text: Sample 7

characteristic: title


E-MTAB-13546:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

text: public

text: E-MTAB-13546:Sample 8

text: less than 1

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

characteristic: common name

text: infant

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: foreskin

text: Homo sapiens

text: Sample 8


E-MTAB-13546:Sample 9

text: University of Southern California

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13546:Sample 9

characteristic: Submitter Id

text: less than 1

characteristic: age

text: ArrayExpress

text: BJ

text: fibroblast

text: not collected

text: human

text: infant

text: normal

text: wild type genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: foreskin

characteristic: organism part

text: Homo sapiens

text: Sample 9


text: SMC

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: human

characteristic: description

characteristic: environmental medium

text: South Korea

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: Homo sapiens

characteristic: project name

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF OULU

text: human

characteristic: common name

text: Finland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: organism

text: RNA-seq of ITGA1, ITGA2, and TEAD1 knockout in prostate cell lines

text: Homo sapiens


name: SAMIN0004121-Whole genome resequencing of Indian rice germplasm

text: Vikas Kumar Singh, Pallavi Sinha, Uma Maheshwar Singh, Anoop Kishor Singh Gurjar, Somali Vijay Habde, IRRI South Asia Regional Center, Varanasi, India

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IBDC

characteristic: broker name

characteristic: collection date

text: Asian cultivated rice

text: India

text: Oryza sativa

text: Oryza sativa

text: Leaf


name: SAMIN0004122-Whole genome resequencing of Indian rice germplasm

text: public

text: IBDC

text: Asian cultivated rice

characteristic: description

text: India

text: Oryza sativa

text: Oryza sativa

text: Leaf


name: SAMIN0004124-Whole genome resequencing of Indian rice germplasm

text: public

text: IBDC

text: Asian cultivated rice

text: India

text: Oryza sativa

text: Oryza sativa

text: Leaf

characteristic: title


name: SAMIN0004125-Whole genome resequencing of Indian rice germplasm

characteristic: ENA-CHECKLIST

text: public

text: IBDC

text: Asian cultivated rice

text: India

text: Oryza sativa

text: Oryza sativa

text: Leaf


name: SAMIN0004126-Whole genome resequencing of Indian rice germplasm

characteristic: ENA-FIRST-PUBLIC

text: public

text: IBDC

text: Asian cultivated rice

text: India

text: Oryza sativa

text: Oryza sativa

text: Leaf


name: SAMIN0004123-Whole genome resequencing of Indian rice germplasm

characteristic: ENA-LAST-UPDATE

text: public

text: IBDC

text: Asian cultivated rice

text: India

text: Oryza sativa

text: Oryza sativa

text: Leaf


characteristic: ENA first public

characteristic: External Id

text: public

tag: Namespace:FACULTY OF CHEMISTRY, BIOTECHNOLOGY AND FOOD SCIENCE (IKBM), NORWEGIAN UNIVERSITY OF LIFE SCIENCES (NMBU), NORWAY

text: uncultured bacterium

text: Norway

text: uncultured bacterium

text: uncultured bacterium


text: FACULTY OF CHEMISTRY, BIOTECHNOLOGY AND FOOD SCIENCE (IKBM), NORWEGIAN UNIVERSITY OF LIFE SCIENCES (NMBU), NORWAY

characteristic: INSDC center name

text: public

text: uncultured bacterium

text: Norway

text: uncultured bacterium

text: uncultured bacterium


text: The Kennel Club Genetics Centre

characteristic: INSDC first public

text: public

tag: Namespace:The Kennel Club Genetics Centre

text: Retriever (Labrador)

characteristic: breed

text: dog

characteristic: common name

text: United Kingdom

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Female

characteristic: sex

text: Retriever (Labrador) WGS


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:CEMM RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: Splenic CD8+ T cells

text: house mouse

text: stimulated murine CD8+ T cells (with 100 µM adenine)

text: Austria

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pooled m/f

characteristic: strain


text: CEMM RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Splenic CD8+ T cells

characteristic: collection date

text: house mouse

characteristic: description

text: Austria

text: Mus musculus

text: Mus musculus

text: pooled m/f


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Splenic CD8+ T cells

text: house mouse

text: stimulated murine CD8+ T cells (with 100 µM hypoxanthine)

text: Austria

text: Mus musculus

text: Mus musculus

text: pooled m/f

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Splenic CD8+ T cells

text: house mouse

text: stimulated murine CD8+ T cells (with 10 nM DC-22)

text: Austria

text: Mus musculus

text: Mus musculus

text: pooled m/f


text: public

text: Splenic CD8+ T cells

text: house mouse

characteristic: common name

text: stimulated murine CD8+ T cells (with 50 nM 6-mercaptopurine)

text: Austria

text: Mus musculus

text: Mus musculus

text: pooled m/f

characteristic: sex


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Splenic CD8+ T cells

text: house mouse

text: stimulated murine CD8+ T cells (Control with dialysed FBS)

text: Austria

text: Mus musculus

text: Mus musculus

text: pooled m/f


text: public

text: Splenic CD8+ T cells

text: house mouse

text: stimulated murine CD8+ T cells (Control with undialysed FBS)

text: Austria

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pooled m/f


text: public

characteristic: SRA accession

text: Splenic CD8+ T cells

text: house mouse

text: Unstimulated murine CD8+ T cells

text: Austria

text: Mus musculus

text: Mus musculus

text: pooled m/f

characteristic: strain


text: public

tag: Namespace:École Polytechnique Fédérale de Lausanne (EPFL)

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mesenchymal stem cell

text: not collected

characteristic: collection date

text: house mouse

text: Protocols: Prior to use, cells were washed with PBS, dissociated with Trypsin-EDTA (0.05% for HEK293T and 0.25% for C3H10T1/2), resuspended with basic culture medium, filtered using 40 µm strainers and counted with Trypan blue live-dead stain using a Countess cell counter. Both HEK293T and C3H10T1/2 cells were maintained in basic culture medium (containing high-glucose DMEM with GlutaMax and pyruvate, 10% FBS and 1x Penicillin-Streptomycin). All cells were placed at 37 °C and 5% CO2 in a humidified incubator. Chromium Single Cell Expression 3’ Reagent Kits Chromium Single Cell Expression 3’ Reagent Kits

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: doxycycline-inducible barcoded ORF overexpression of individual transcription factors

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: École Polytechnique Fédérale de Lausanne (EPFL)

characteristic: INSDC center name

text: public

text: ArrayExpress

text: mesenchymal stem cell

text: not collected

text: house mouse

characteristic: description

text: embryo stage

text: normal

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


text: UNIVERSITY OF OXFORD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF OXFORD

text: University of Oxford

characteristic: collecting institution

text: Modernising Medical Microbiology

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

text: not collected

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: B

characteristic: influenza virus type

text: Influenza B virus

characteristic: organism

text: not applicable

characteristic: other pathogens test result

characteristic: other pathogens tested

text: Influenza B virus

text: fluB

characteristic: serotype (required for a seropositive sample)

text: Influenza genome sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Evolutionary Biology Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Evolutionary Biology Centre

characteristic: Submitter Id

characteristic: collection date

text: adult

characteristic: description

text: Sweden

text: Leptidea juvernica

text: Leptidea juvernica

text: male

characteristic: sex

characteristic: title


text: Evolutionary Biology Centre

text: public

characteristic: INSDC status

text: adult

text: Sweden

characteristic: geographic location (country and/or sea)

text: Leptidea juvernica

characteristic: organism

text: Leptidea juvernica

text: female


text: Evolutionary Biology Centre

text: public

text: larva

text: Sweden

text: Leptidea juvernica

text: Leptidea juvernica

text: female


text: Evolutionary Biology Centre

text: public

text: larva

text: Sweden

text: Leptidea juvernica

text: Leptidea juvernica

text: male


text: Evolutionary Biology Centre

text: public

text: adult

text: Spain

text: Leptidea reali

text: Leptidea reali

text: male


text: Evolutionary Biology Centre

text: public

text: adult

text: Spain

text: Leptidea reali

text: Leptidea reali

text: female


text: Evolutionary Biology Centre

text: public

text: larva

text: Spain

text: Leptidea reali

text: Leptidea reali

text: female


text: Evolutionary Biology Centre

text: public

text: larva

text: Spain

text: Leptidea reali

text: Leptidea reali

text: male


text: Evolutionary Biology Centre

text: public

text: adult

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis

text: female


text: Evolutionary Biology Centre

text: public

text: adult

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis

text: male


text: Evolutionary Biology Centre

text: public

text: larva

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis

text: female


text: Evolutionary Biology Centre

text: public

text: larva

text: Sweden

text: Leptidea sinapis

text: Leptidea sinapis

text: male


text: Ifremer

text: public

text: AGTGTTGCAC CGTGTACCAG

characteristic: adapters

text: SeBiMER

characteristic: broker name

text: blackchin tilapia

characteristic: common name

characteristic: environmental package

text: No

text: Senegal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lac Guiers, Keur Momar Sarr

characteristic: geographic location (region and locality)

text: eukaryote

characteristic: investigation type

text: Lac de Guiers ecosystem, Salinity 0

text: Sarotherodon melanotheron

text: HypeSalsa

characteristic: project name

text: Sarotherodon melanotheron

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: TATGTAGTCA CATTAGTGCG

text: SeBiMER

characteristic: collection date

text: blackchin tilapia

text: No

text: Senegal

text: Lac Guiers, Keur Momar Sarr

text: eukaryote

text: Lac de Guiers ecosystem, Salinity 0

text: Sarotherodon melanotheron

text: HypeSalsa

text: Sarotherodon melanotheron

text: Sequencing by synthesis (Illumina)


text: Ifremer

text: public

characteristic: INSDC status

text: ACTCGGCAAT TTCAGTTGTC

characteristic: adapters

text: SeBiMER

characteristic: broker name

text: blackchin tilapia

characteristic: common name

characteristic: environmental package

text: No

text: Senegal

characteristic: geographic location (country and/or sea)

text: Lac Guiers, Keur Momar Sarr

text: eukaryote

text: Lac de Guiers ecosystem, Salinity 0

text: Sarotherodon melanotheron

characteristic: organism

text: HypeSalsa

text: Sarotherodon melanotheron

text: Sequencing by synthesis (Illumina)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Ifremer

text: public

text: GTCTAATGGC CCTGACCACT

text: SeBiMER

text: blackchin tilapia

text: No

text: Senegal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lac Guiers, Keur Momar Sarr

characteristic: geographic location (region and locality)

text: eukaryote

characteristic: investigation type

text: Lac de Guiers ecosystem, Salinity 0

text: Sarotherodon melanotheron

text: HypeSalsa

characteristic: project name

text: Sarotherodon melanotheron

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CCATCTCGCC AACCATAGAA

text: SeBiMER

characteristic: collection date

text: blackchin tilapia

text: No

text: Senegal

text: Lac Guiers, Keur Momar Sarr

text: eukaryote

text: Lac de Guiers ecosystem, Salinity 0

text: Sarotherodon melanotheron

text: HypeSalsa

text: Sarotherodon melanotheron

text: Sequencing by synthesis (Illumina)