WA1-Rdv5uM + Rib100uM

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characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

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characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 3 times in cell culture in the presence of ribavirin 150uM. Replicate C

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rib150uM-p3C

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate A

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM-p1A

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate B

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM-p1B

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate C

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Rdv5uM+Rib100uM-p1C

characteristic: organism

text: drag and drop uploader tool


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Centro de Biología Molecular Severo Ochoa (CBMSO) (CSIC-UAM), Madrid, Spain

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 2 times in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate A

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM-p2A

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 2 times in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate B

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM-p2B

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 2 times in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate C

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM-p2C

text: drag and drop uploader tool


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 3 times in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate A

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Rdv5uM+Rib100uM-p3A

characteristic: organism

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 3 times in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate B

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: Vero C1008 African green monkey kidney Cell Line, Clone E6

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM-p3B

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 3 times in cell culture in the presence of remdesivir 5uM + ribavirin 100uM. Replicate C

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM-p3C

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: drag and drop uploader tool


text: Fundacion Instituto de Investigacion Fundacion Jimenez Diaz

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 5uM + ribavirin 150uM. Replicate A

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib150uM-p1A

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 5uM + ribavirin 150uM. Replicate B

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Rdv5uM+Rib150uM-p1B

characteristic: organism

text: active surveillance in response to outbreak

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 5uM + ribavirin 150uM. Replicate C

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib150uM-p1C

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 2 times in cell culture in the presence of remdesivir 5uM + ribavirin 150uM. Replicate B

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib150uM-p2B

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 10uM + ribavirin 100uM. Replicate A

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Rdv10uM+Rib100uM-p1A

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 10uM + ribavirin 100uM. Replicate B

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Rdv10uM+Rib100uM-p1B

characteristic: organism

text: drag and drop uploader tool


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Centro de Biología Molecular Severo Ochoa (CBMSO) (CSIC-UAM), Madrid, Spain

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 10uM + ribavirin 100uM. Replicate C

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv10uM+Rib100uM-p1C

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 2 times in cell culture in the presence of remdesivir 10uM + ribavirin 100uM. Replicate A

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv10uM+Rib100uM-p2A

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 2 times in cell culture in the presence of remdesivir 10uM + ribavirin 100uM. Replicate B

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Rdv10uM+Rib100uM-p2B

text: drag and drop uploader tool


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 2 times in cell culture in the presence of remdesivir 10uM + ribavirin 100uM. Replicate C

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Rdv10uM+Rib100uM-p2C

characteristic: organism

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 10uM + ribavirin 150uM. Replicate A

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv10uM+Rib150uM-p1A

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 10uM + ribavirin 150uM. Replicate B

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: Vero C1008 African green monkey kidney Cell Line, Clone E6

text: not applicable

text: Vero E6_WA1-Rdv10uM+Rib150uM-p1B

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus passaged 1 time in cell culture in the presence of remdesivir 10uM + ribavirin 150uM. Replicate C

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Rdv10uM+Rib150uM-p1C

text: Severe acute respiratory syndrome coronavirus 2

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: Fundacion Instituto de Investigacion Fundacion Jimenez Diaz

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the absence of drug

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Nodrug

characteristic: organism

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of ribavirin 100uM

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rib100uM

text: active surveillance in response to outbreak

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of ribavirin 150uM

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rib150uM

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Nodrug2

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of remdesivir 5uM

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Rdv5uM

characteristic: organism

text: drag and drop uploader tool


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of remdesivir 10uM

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv10uM

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Centro de Biología Molecular Severo Ochoa (CBMSO) (CSIC-UAM), Madrid, Spain

characteristic: collection date

text: Celia Perales

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: not applicable

text: Vero E6_WA1-Nodrug3

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of remdesivir 2.5uM + ribavirin 80uM

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

characteristic: host health state

characteristic: host scientific name

text: not applicable

text: Vero E6_WA1-Rdv25uM+Rib80uM

text: drag and drop uploader tool


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of remdesivir 5uM + ribavirin 80uM

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Vero-E6 cells

text: not applicable

text: not applicable

characteristic: host sex

text: Vero E6_WA1-Rdv5uM+Rib80uM

characteristic: organism

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of remdesivir 2.5uM + ribavirin 100uM

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Vero-E6 cells

characteristic: host common name

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv25uM+Rib100uM

characteristic: sample capture status

text: drag and drop uploader tool

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Celia Perales

text: Sequence obtained from USA-WA1/2020 virus in cell culture in the presence of remdesivir 5uM + ribavirin 100uM

text: Spain

text: Madrid area

text: Vero-E6 cells

text: not applicable

text: not applicable

text: Vero E6_WA1-Rdv5uM+Rib100uM

characteristic: host subject id

characteristic: isolate

text: drag and drop uploader tool


CUMV 55184-Ovary

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: CUMV 55184-Ovary

tag: Namespace:Institute of Avian Research "Vogelwarte Helgoland"

characteristic: Submitter Id

text: Ovary tissue

text: USA

text: Empidonax minimus

text: Empidonax minimus

text: E. minimus Ovary


CUMV 55184-Retina

characteristic: ENA-CHECKLIST

text: Institute of Avian Research "Vogelwarte Helgoland"

text: public

text: CUMV 55184-Retina

characteristic: collection date

text: Retina tissue

characteristic: description

text: USA

text: Empidonax minimus

characteristic: organism

text: Empidonax minimus

text: E. minimus Retina


CUMV 55184-Brain

text: public

text: CUMV 55184-Brain

text: Brain tissue

text: USA

characteristic: geographic location (country and/or sea)

text: Empidonax minimus

text: Empidonax minimus

text: E. minimus Brain

characteristic: title


characteristic: External Id

text: public

characteristic: MLST sequence type

tag: Namespace:Finnish Institute for Health and Welfare

text: dommestic C. jejuni (human)

text: Finland

text: Campylobacter jejuni

text: Campylobacter jejuni

text: C. jejuni


text: Finnish Institute for Health and Welfare

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: dommestic C. jejuni (human)

text: Finland

text: Campylobacter jejuni

text: Campylobacter jejuni

text: C. jejuni


text: public

characteristic: INSDC status

text: dommestic C. jejuni (broiler)

text: Finland

text: Campylobacter jejuni

text: Campylobacter jejuni

text: C. jejuni


text: public

text: dommestic C. jejuni (turkey)

text: Finland

text: Campylobacter jejuni

text: Campylobacter jejuni

text: C. jejuni


text: public

text: dommestic C. jejuni (mink)

text: Finland

text: Campylobacter jejuni

text: Campylobacter jejuni

text: C. jejuni


text: public

text: dommestic C. jejuni (raccoon dog)

text: Finland

text: Campylobacter jejuni

text: Campylobacter jejuni

text: C. jejuni


E-MTAB-13411:Sample 1

text: public

text: E-MTAB-13411:Sample 1

tag: Namespace:Centre for Structural Systems Biology (CSSB)

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: Protocols: Samples for RNA-sequencing were prepared in triplicate for each condition and time point, i.e. three separate parasite cultures each were grown in parallel for over two weeks. During the second intra-erythrocytic developmental cycle after reinvasion into erythrocytes from the respective donor, two 10-mL dishes each were harvested for parasites at the ring stage (6 – 9 hpi) and one 10-mL dish each for trophozoites (26 – 29 hpi). Samples were collected by centrifuging the culture for 5 min at 800 g and 37°C and dissolving the erythrocyte pellet in 5 mL TRIzol prewarmed to 37°C, followed by immediate transfer to -80°C for storage. The parasitemia was 0.3% at the start of the experiments with high, medium and low-iron donor blood and 2 – 3% at the time of harvest. Cultures treated with hepcidin had a starting parasitemia of 0.6% and those without hepcidin 1% to reach a parasitemia of 4 – 5% during the second cycle. For each experiment, the parasitemia was kept consistent at the point of harvest as high parasite densities can affect transcription. The P. falciparum strain 3D7 was cultured according to modified standard procedures at 5% hematocrit using human 0+ erythrocytes from University Medical Center Hamburg-Eppendorf (UKE) at 1% O2, 5% CO2 and 94% N2. RPMI 1640 medium was supplemented with 0.5% (w/v) AlbuMAX II, 20 µg/mL gentamicin and 100 µM hypoxanthine (Thermo Fisher Scientific). For experiment 1, erythrocytes from an individual with high iron status (231 µg/L ferritin, 18.2 g/dL Hb, 51.5% hematocrit), another with iron deficiency (3 µg/L ferritin, 11.4 g/dL Hb, 36.3% hematocrit) and a healthy individual (21 µg/L ferritin, 15.0 g/dL Hb, 42.3% hematocrit) were used. For experiment 2, red blood cells from another healthy individual with or without the addition of 0.7 µM hepcidin (Bachem) to the culture medium was used for comparison. Parasites were synchronized to a 3-h age window by isolating late schizonts from a 60% Percoll (GE Healthcare, Life Sciences) gradient and culturing these for 3 h with erythrocytes from the respective donor, followed by controlled elimination of advanced parasite stages using 5% (w/v) D-sorbitol (Carl Roth) for 10 min at 37°C. For RNA extraction, the samples frozen in TRIzol were thawed, mixed thoroughly with 0.1 volume cold chloroform, and incubated at room temperature for 3 min. Following centrifugation at 20,000 g and 4°C for 30 min, the supernatants were transferred to fresh vials and combined with an equal volume of 70% ethanol. RNA was purified using the RNeasy MinElute Kit (Qiagen) by on-column DNase I digest for 30 min and elution with 14 µL water. The GLOBINclear Human Kit (ThermoFisher Scientific) was then employed to deplete human globin mRNA in all samples. The Qubit RNA HS Assay Kit and Qubit 3.0 fluorometer (ThermoFisher Scientific) were used for RNA quantification. Upon arrival at the EMBL Genomics Core Facility (GeneCore Heidelberg, Germany), the RNA quality of each sample was evaluated using the RNA 6000 Nano kit and Bioanalyzer 2100 (Agilent). The median RNA integrity number (RIN) of all samples was 7.30 (IQR: 6.85 – 8.15). Individually barcoded strand-specific libraries for mRNA sequencing were prepared from total RNA samples of high quality (approximately 150 ng per sample) using the NEBNext® RNA Ultra II Directional RNA Library Prep Kit (New England Biolabs) for 12 PCR cycles on the liquid handler Biomek i7 (Beckman Coulter GmbH) at GeneCore.

text: ring stage trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: low iron

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: A

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 1


E-MTAB-13411:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Centre for Structural Systems Biology (CSSB)

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: trophozoite

text: not collected

text: medium iron

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: A

text: Plasmodium falciparum

text: Sample 10


E-MTAB-13411:Sample 11

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 11

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: medium iron

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: B

text: Plasmodium falciparum

text: Sample 11

characteristic: title


E-MTAB-13411:Sample 12

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 12

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: medium iron

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: C

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 12


E-MTAB-13411:Sample 13

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: ring stage trophozoite

text: not collected

text: high iron

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: A

text: Plasmodium falciparum

text: Sample 13


E-MTAB-13411:Sample 14

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 14

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: ring stage trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: high iron

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: B

text: Plasmodium falciparum

text: Sample 14

characteristic: title


E-MTAB-13411:Sample 15

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 15

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: ring stage trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: high iron

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: C

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 15


E-MTAB-13411:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: trophozoite

text: not collected

text: high iron

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: A

text: Plasmodium falciparum

text: Sample 16


E-MTAB-13411:Sample 17

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 17

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: high iron

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: B

text: Plasmodium falciparum

text: Sample 17

characteristic: title


E-MTAB-13411:Sample 18

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 18

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: high iron

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: C

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 18


E-MTAB-13411:Sample 19

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: ring stage trophozoite

text: not collected

text: control

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: A

text: Plasmodium falciparum

text: Sample 19


E-MTAB-13411:Sample 2

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 2

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: ring stage trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: low iron

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: B

text: Plasmodium falciparum

text: Sample 2

characteristic: title


E-MTAB-13411:Sample 20

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 20

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: ring stage trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: control

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: B

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 20


E-MTAB-13411:Sample 21

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: ring stage trophozoite

text: not collected

text: control

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: C

text: Plasmodium falciparum

text: Sample 21


E-MTAB-13411:Sample 22

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 22

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: control

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: A

text: Plasmodium falciparum

text: Sample 22

characteristic: title


E-MTAB-13411:Sample 23

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 23

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: control

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: B

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 23


E-MTAB-13411:Sample 24

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 24

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: trophozoite

text: not collected

text: control

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: C

text: Plasmodium falciparum

text: Sample 24


E-MTAB-13411:Sample 25

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 25

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: ring stage trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: hepcidin

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: A

text: Plasmodium falciparum

text: Sample 25

characteristic: title


E-MTAB-13411:Sample 26

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 26

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: ring stage trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: hepcidin

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: B

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 26


E-MTAB-13411:Sample 27

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 27

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: ring stage trophozoite

text: not collected

text: hepcidin

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: C

text: Plasmodium falciparum

text: Sample 27


E-MTAB-13411:Sample 28

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 28

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: hepcidin

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: A

text: Plasmodium falciparum

text: Sample 28

characteristic: title


E-MTAB-13411:Sample 29

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 29

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: hepcidin

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: B

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 29


E-MTAB-13411:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: ring stage trophozoite

text: not collected

text: low iron

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: C

text: Plasmodium falciparum

text: Sample 3


E-MTAB-13411:Sample 30

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 30

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: hepcidin

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: C

text: Plasmodium falciparum

text: Sample 30

characteristic: title


E-MTAB-13411:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 4

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: low iron

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: A

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 4


E-MTAB-13411:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: trophozoite

text: not collected

text: low iron

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: B

text: Plasmodium falciparum

text: Sample 5


E-MTAB-13411:Sample 6

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 6

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: low iron

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: C

text: Plasmodium falciparum

text: Sample 6

characteristic: title


E-MTAB-13411:Sample 7

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13411:Sample 7

text: ArrayExpress

text: not collected

text: malaria parasite P. falciparum

text: ring stage trophozoite

characteristic: developmental stage

characteristic: experiment

text: not collected

text: medium iron

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

characteristic: organism part

text: A

characteristic: replicate

text: Plasmodium falciparum

characteristic: strain

text: Sample 7


E-MTAB-13411:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-13411:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: malaria parasite P. falciparum

characteristic: description

text: ring stage trophozoite

text: not collected

text: medium iron

text: not applicable

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: whole organism

text: B

text: Plasmodium falciparum

text: Sample 8


E-MTAB-13411:Sample 9

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13411:Sample 9

text: ArrayExpress

characteristic: broker name

text: not collected

text: malaria parasite P. falciparum

characteristic: common name

text: ring stage trophozoite

text: not collected

characteristic: geographic location (country and/or sea)

text: medium iron

text: not applicable

text: Plasmodium falciparum

text: Plasmodium falciparum

text: whole organism

text: C

text: Plasmodium falciparum

text: Sample 9

characteristic: title


WILD-TYPE

characteristic: ENA-CHECKLIST

text: public

text: WILD-TYPE

tag: Namespace:CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE

text: fruit fly

text: ONT long reads sequencing

text: France

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing dics

text: wild-type


characteristic: ENA-FIRST-PUBLIC

text: CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE

text: public

text: fruit fly

text: ONT long reads sequencing

text: France

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing dics


characteristic: ENA-LAST-UPDATE

text: Francis Crick Institute

text: public

tag: Namespace:Francis Crick Institute

text: human

text: Ancient genome from early-mid Roman individual from Cambridgeshire

text: United Kingdom

text: Homo sapiens

text: Homo sapiens

text: right petrous temporal bone

text: Offord Cluny 203645


text: SAPIENZA UNIVERSITY OF ROME

characteristic: INSDC first public

text: public

tag: Namespace:SAPIENZA UNIVERSITY OF ROME

text: Shotgun metagenomic analysis of dental calculus from ancient human

text: United Kingdom

text: Peterborough, England

characteristic: geographic location (region and locality)

characteristic: isolate

text: dental calculus

text: human metagenome

text: human metagenome

text: Human dental calculus


text: SAPIENZA UNIVERSITY OF ROME

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Shotgun metagenomic analysis of dental calculus from ancient lab control

text: United Kingdom

text: Peterborough, England

text: laboratory negative control

text: metagenome

text: metagenome

text: laboratory control


characteristic: External Id

text: IFREMER

text: public

text: vibrio

text: Bacteria isolated on TCBS at 20�C from oyster tissues

characteristic: description

text: No

text: France

text: N 43�26.058'

characteristic: geographic location (latitude)

text: E 003�39.878'

characteristic: geographic location (longitude)

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

characteristic: organism

text: Vibrionaceae bacterium

text: Vibrio OH4


text: IFREMER

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: vibrio

characteristic: common name

text: No

text: France

text: N 43�26.058'

text: E 003�39.878'

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

text: Vibrionaceae bacterium

text: Vibrio OC7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFREMER

text: public

text: vibrio

text: No

text: France

characteristic: geographic location (country and/or sea)

text: N 43�26.058'

text: E 003�39.878'

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

text: Vibrionaceae bacterium

text: Vibrio OG1

characteristic: title


characteristic: ENA-LAST-UPDATE

text: IFREMER

characteristic: INSDC first public

text: public

text: vibrio

text: Bacteria isolated on TCBS at 37�C from oyster tissues

text: No

text: France

text: N 43�26.058'

text: E 003�39.878'

text: Occitanie, Etang de Thau

characteristic: geographic location (region and locality)

text: oyster

text: Vibrionaceae bacterium

text: Vibrionaceae bacterium

text: Vibrio OE7


text: IFREMER

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: vibrio

text: No

text: France

text: N 43�26.058'

text: E 003�39.878'

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

text: Vibrionaceae bacterium

text: Vibrio OE9


characteristic: External Id

text: IFREMER

text: public

text: vibrio

characteristic: description

text: No

text: France

text: N 43�26.058'

characteristic: geographic location (latitude)

text: E 003�39.878'

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

text: Vibrionaceae bacterium

text: Vibrio OE10


text: IFREMER

characteristic: INSDC center name

text: public

text: vibrio

text: No

text: France

text: N 43�26.058'

text: E 003�39.878'

characteristic: geographic location (longitude)

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

characteristic: organism

text: Vibrionaceae bacterium

text: Vibrio OE12


text: IFREMER

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: vibrio

characteristic: common name

text: No

text: France

text: N 43�26.058'

text: E 003�39.878'

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

text: Vibrionaceae bacterium

text: Vibrio OB7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFREMER

text: public

text: vibrio

text: No

text: France

characteristic: geographic location (country and/or sea)

text: N 43�26.058'

text: E 003�39.878'

text: Occitanie, Etang de Thau

text: oyster

text: Vibrionaceae bacterium

text: Vibrionaceae bacterium

text: Vibrio OE8


characteristic: ENA-LAST-UPDATE

text: UPPSALA UNIVERSITY

characteristic: INSDC first public

text: public

tag: Namespace:UPPSALA UNIVERSITY

text: BGI:AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

characteristic: adapters

text: laboratory environment

characteristic: broad-scale environmental context

text: whole genome sequencing of negative control containing buffer

text: sterile water

characteristic: environmental medium

text: Norway

unit: DD

text: laboratory environment

characteristic: local environmental context

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: metagenome

text: HoloFish

characteristic: project name

text: metagenome

text: BGI

characteristic: sequencing method

text: Negative extraction blank control

characteristic: title


characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: laboratory environment

characteristic: collection date

characteristic: description

text: sterile water

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: laboratory environment

text: 1X Shield buffer Zymo Research

text: metagenome

characteristic: organism

text: HoloFish

text: metagenome

text: BGI

text: Negative library blank control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UPPSALA UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: adapters

text: laboratory environment

text: sterile water

text: Norway

characteristic: geographic location (country and/or sea)

text: laboratory environment

text: 1X Shield buffer Zymo Research

text: metagenome

text: HoloFish

text: metagenome

text: BGI

text: Negative PCR blank control


characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: whole genome sequencing of salmon gill tissue

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 1: low cestode load

unit: cm

text: Size class: Medium

unit: g

text: gill tissue material

text: Salmon genome from F001

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Small

text: gill tissue material

text: Salmon genome from F010


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UPPSALA UNIVERSITY

characteristic: INSDC first public

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F101


characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F102


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 2: moderate cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F103

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F104


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F107


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 0: no cestode

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F108


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 1: low cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F011

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 3: severe cestode load

text: Size class: Small

text: gill tissue material

text: Salmon genome from F110


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F111


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Small

text: gill tissue material

text: Salmon genome from F112


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 2: moderate cestode load

text: Size class: Small

text: gill tissue material

text: Salmon genome from F012

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F125


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F126


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F127


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F128

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F013


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F130


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Small

text: gill tissue material

text: Salmon genome from F131


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 0: no cestode

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F134

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Small

text: gill tissue material

text: Salmon genome from F135


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 0: no cestode

text: Size class: Small

text: gill tissue material

text: Salmon genome from F136


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F139


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 1: low cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F014

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Small

text: gill tissue material

text: Salmon genome from F140


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F142


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 0: no cestode

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F143


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 2: moderate cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F144

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F145


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F146


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 0: no cestode

text: Size class: Small

text: gill tissue material

text: Salmon genome from F147


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 2: moderate cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F148

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F015


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F150


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F151


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: Atlantic salmon

text: Atlantic salmon

text: Norway

text: 1X Shield buffer Zymo Research

characteristic: negative control type

text: Salmo salar

text: HoloFish

characteristic: project name

text: Salmo salar

text: BGI

characteristic: sequencing method

text: index 2: moderate cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F152

characteristic: title


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

text: Atlantic salmon

characteristic: description

text: Norway

characteristic: geographic location (latitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 1: low cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F154


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Atlantic salmon

text: Norway

characteristic: geographic location (longitude)

text: 1X Shield buffer Zymo Research

text: Salmo salar

characteristic: organism

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Large

text: gill tissue material

text: Salmon genome from F157


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

characteristic: SRA accession

characteristic: adapters

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon

text: Norway

characteristic: geographic location (country and/or sea)

text: 1X Shield buffer Zymo Research

text: Salmo salar

text: HoloFish

text: Salmo salar

text: BGI

text: index 2: moderate cestode load

text: Size class: Medium

text: gill tissue material

text: Salmon genome from F158