characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: not collected

text: human

characteristic: common name

text: embryo stage

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia

text: ArrayExpress

text: fibroblast

text: not collected

characteristic: collection date

text: human

text: Protocols: In this study influenza A/Puerto Rico/8/1934 was used to infect WI-38 VA-13 cells. Mock-infected cells were included at analysis as controls. Following the incubation period, the cell monolayer was washed twice with PBS and was directly lysed by adding phenol-containing LIRA reagent (Biolabmix, Russia). WI-38 VA-13 cells were cultured in Gibco MEM medium supplemented with GlutaMAX (Thermo Fisher Scientific), 10% fetal bovine serum (FBS) (Thermo Fisher Scientific) and sodium pyruvate at 37°C with 5% CO2. Cells were mock infected or infected with influenza A/Puerto Rico/8/1934 virus (from the collection of Smorodintsev Research Institute of Influenza, Ministry of Health of the Russian Federation) at a dose of 1 TID50/cell and incubated at 37°С for 24 h. Total RNA was extracted from cells using phenol/chloroform extraction with LRU RNA extraction kit (Biolabmix, Russia) according the manufacturer’s protocol and analyzed on a 1.5% agarose gel and using an Agilent 2100 Bioanalyzer (Agilent Technologies). RIN > 7 was set as the threshold RIN. The quality of the Input RNA was assessed by the Agilent Bioanalyzer 2100 System and RNA 6000 Nano Chip (Agilent Technologies). For PolyA mRNA enrichment, high quality RNA with a RIN score > 7 was used. ~1 µg total RNA was used for library construction. PolyA mRNA enrichment and construction of RNA-seq libraries were performed with the NEBNext® Poly(A) mRNA Magnetic Isolation Module and the NEBNext® Ultra™ II Directional RNA Library Prep Kit for Illumina (NEB) correspondingly. Library concentrations were quantified with the Qubit 2.0 Fluorometric Quantitation system using Qubit DNA HS Assay Kit (Thermo Fisher Scientific). The quality control analysis of library was assessed using the Agilent Bioanalyzer 2100 System and DNA High Sensitivity Chip (Agilent Technologies).

characteristic: description

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: CRISPR/Cas9 mediated mutation of IFITM3 gene

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: infect

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: not collected

text: human

characteristic: common name

text: embryo stage

text: normal

text: wild type genotype

text: not collected

text: A/Puerto Rico/8/1934 (H1N1) influenza virus

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: fibroblast

text: not collected

characteristic: collection date

text: human

characteristic: description

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female


Angseri Hot Spring

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNUD,VNSGU

text: public

text: Angseri Hot Spring

characteristic: broad-scale environmental context

characteristic: depth

text: Angseri Hot Spring Water Samples

text: Water

characteristic: environmental medium

text: Indonesia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Angseri Hot Spring is located in Bali, Indonesia

characteristic: local environmental context

text: hot springs metagenome

characteristic: organism

text: Angseri hot spring metagenome

characteristic: project name

text: hot springs metagenome

text: Angseri Hot Spring Metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Research Institute for Farm Animal Biology (FBN)

characteristic: Submitter Id

characteristic: collection date

text: cattle

characteristic: common name

text: calf intestine

text: Germany

text: Bos taurus

text: Bos taurus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Research Institute for Farm Animal Biology (FBN)

text: public

text: cattle

text: calf intestine

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Bos taurus

text: Bos taurus


text: Animal Behaviour

text: public

characteristic: Ring No.

tag: Namespace:Animal Behaviour

text: common buzzard

text: Germany

text: north

characteristic: habitat

characteristic: nest

text: Buteo buteo

characteristic: organism

text: first

text: Buteo buteo

text: M

characteristic: sex

text: Cloacal swab


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Animal Behaviour

characteristic: INSDC center name

text: public

text: common buzzard

text: Germany

text: north

text: Buteo buteo

text: first

text: Buteo buteo

text: F

text: Cloacal swab

characteristic: title


text: Animal Behaviour

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: common buzzard

text: Germany

text: south

text: Buteo buteo

text: first

text: Buteo buteo

text: M

text: Cloacal swab


characteristic: ENA-CHECKLIST

text: Animal Behaviour

text: public

characteristic: Submitter Id

characteristic: collection date

text: common buzzard

characteristic: common name

text: Germany

text: north

text: Buteo buteo

text: second

text: Buteo buteo

text: F

text: Cloacal swab


characteristic: ENA-FIRST-PUBLIC

text: Animal Behaviour

text: public

characteristic: Ring No.

text: common buzzard

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: north

text: Buteo buteo

text: second

text: Buteo buteo

text: M

text: Cloacal swab


text: Animal Behaviour

text: public

text: common buzzard

text: Germany

text: north

characteristic: habitat

characteristic: nest

text: Buteo buteo

characteristic: organism

text: third

text: Buteo buteo

text: F

characteristic: sex

text: Cloacal swab


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Animal Behaviour

characteristic: INSDC center name

text: public

text: common buzzard

text: Germany

text: south

text: Buteo buteo

text: second

text: Buteo buteo

text: M

text: Cloacal swab

characteristic: title


text: Animal Behaviour

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: common buzzard

text: Germany

text: teuto

text: Buteo buteo

text: first

text: Buteo buteo

text: M

text: Cloacal swab


characteristic: ENA-CHECKLIST

text: Animal Behaviour

text: public

characteristic: Submitter Id

characteristic: collection date

text: common buzzard

characteristic: common name

text: Germany

text: teuto

text: Buteo buteo

text: second

text: Buteo buteo

text: M

text: Cloacal swab


characteristic: ENA-FIRST-PUBLIC

text: Animal Behaviour

text: public

characteristic: Ring No.

text: common buzzard

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: south

text: Buteo buteo

text: first

text: Buteo buteo

text: F

text: Cloacal swab


text: Animal Behaviour

text: public

text: common buzzard

text: Germany

text: south

characteristic: habitat

characteristic: nest

text: Buteo buteo

characteristic: organism

text: second

text: Buteo buteo

text: F

characteristic: sex

text: Cloacal swab


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Animal Behaviour

characteristic: INSDC center name

text: public

text: common buzzard

text: Germany

text: teuto

text: Buteo buteo

text: first

text: Buteo buteo

text: F

text: Cloacal swab

characteristic: title


text: Animal Behaviour

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: common buzzard

text: Germany

text: teuto

text: Buteo buteo

text: second

text: Buteo buteo

text: F

text: Cloacal swab


E-MTAB-13589:p53 null ESC 1

text: 3 days in N2B27 media

characteristic: Characteristics growth condition

characteristic: ENA-CHECKLIST

text: ICL-CFB

text: public

text: E-MTAB-13589:p53 null ESC 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic cell line

text: embryonic stem cell

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: Protocols: Cells grown for 3 days in N2B27 media were recovered into growth media and then resuspended in RLT lysis buffer (Qiagen). RNA extraction was performed using the Qiagen RNeasy kit according to the manufacturer’s instructions. RNA samples were quantified using a Qubit fluorometer (Thermo Fisher Scientific) and the quality assessed by TapeStation electrophoresis (Agilent). mRNA was isolated using oligo dT beads. mRNA was then fragmented, converted to cDNA and ligated to Illumina adapters. Following sample indexing, the quality of cDNA libraries was also assessed by TapeStation.

text: embryo

characteristic: developmental stage

text: p53 null

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: embryonic tissue

characteristic: organism part

text: Mus musculus

text: p53 null ESC 1


E-MTAB-13589:p53 null ESC 2

text: 3 days in N2B27 media

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

text: public

text: E-MTAB-13589:p53 null ESC 2

text: ArrayExpress

text: embryonic cell line

text: embryonic stem cell

text: not collected

text: house mouse

characteristic: description

text: embryo

text: p53 null

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic tissue

text: Mus musculus

text: p53 null ESC 2


E-MTAB-13589:p53 null ESC 3

text: 3 days in N2B27 media

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13589:p53 null ESC 3

text: ArrayExpress

text: embryonic cell line

text: embryonic stem cell

text: not collected

text: house mouse

text: embryo

text: p53 null

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: embryonic tissue

text: Mus musculus

text: p53 null ESC 3

characteristic: title


E-MTAB-13589:p53 null ESC 4

text: 3 days in N2B27 media

characteristic: Characteristics growth condition

characteristic: ENA-CHECKLIST

text: ICL-CFB

text: public

text: E-MTAB-13589:p53 null ESC 4

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic cell line

text: embryonic stem cell

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: embryo

text: p53 null

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: embryonic tissue

text: Mus musculus

text: p53 null ESC 4


E-MTAB-13589:Wild-type ESC 1

text: 3 days in N2B27 media

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ICL-CFB

text: public

text: E-MTAB-13589:Wild-type ESC 1

text: ArrayExpress

text: embryonic cell line

text: embryonic stem cell

text: not collected

text: house mouse

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: embryonic tissue

characteristic: organism part

text: Mus musculus

text: Wild-type ESC 1


E-MTAB-13589:Wild-type ESC 2

text: 3 days in N2B27 media

characteristic: External Id

text: ICL-CFB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-13589:Wild-type ESC 2

text: ArrayExpress

text: embryonic cell line

text: embryonic stem cell

text: not collected

text: house mouse

characteristic: description

text: embryo

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryonic tissue

text: Mus musculus

text: Wild-type ESC 2


E-MTAB-13589:Wild-type ESC 3

text: 3 days in N2B27 media

characteristic: Characteristics growth condition

characteristic: ENA-CHECKLIST

text: ICL-CFB

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13589:Wild-type ESC 3

text: ArrayExpress

text: embryonic cell line

text: embryonic stem cell

text: not collected

text: house mouse

text: embryo

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: embryonic tissue

text: Mus musculus

text: Wild-type ESC 3

characteristic: title


E-MTAB-13589:Wild-type ESC4

text: 3 days in N2B27 media

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ICL-CFB

text: public

text: E-MTAB-13589:Wild-type ESC4

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic cell line

text: embryonic stem cell

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: embryonic tissue

text: Mus musculus

text: Wild-type ESC4


embryo cells

characteristic: External Id

characteristic: INSDC center name

text: public

text: embryo cells

tag: Namespace:HUBRECHT INSTITUTE, UTRECHT, THE NETHERLANDS

text: human

text: TE and ICM of embryo cells

text: Netherlands

text: Homo sapiens

text: Homo sapiens

text: embryo


control cells

text: HUBRECHT INSTITUTE, UTRECHT, THE NETHERLANDS

characteristic: INSDC first public

text: public

text: control cells

text: human

text: cultured cells from amniotic fluid or chorionic villi with known karyotypes

characteristic: description

text: Netherlands

text: Homo sapiens

text: Homo sapiens

text: control


text: UCL

text: public

text: ArrayExpress

text: resting memory B cell

text: donor with aviremia

characteristic: clinical information

text: not collected

text: human

text: Protocols: Single IgG+ antigen-specific (HIV-1 Envelope protein reactive) B cells were isolated using a BD FACS-Melody, with the purity threshold set to yield. Cells were sorted one per well into a 96-well plate containing lysis buffer (0.2% Triton X-100 and RNase inhibitor), oligo-DT primers and dNTPs. Nucleic acid extraction cannot be accurately carried out from single cells sorted into individual wells of a 96 well plate. Instead, the Smart-Seq2 protocol was followed to carry out full-length scRNA-seq on single memory B cells, with modification of the pre-amplification step that was optimized to reduce primer-dimer by excluding the IS PCR primers from the PCR mix. Briefly, total mRNA present after collection in lysis buffer in each well was reverse transcribed and then pre-amplified using 18 PCR cycles to generate cDNA that was purified using Ampure XP beads. The purified cDNA was assessed by Agilent Tapestation to confirm a peak at 1-2 kb and was quantified by Qubit for normalisation to 1.5 ng for optimal tagmentation (adjusted from 1 ng to account for the presence of primer-dimer). Libraries for sequencing were then generated by performing an enrichment PCR of 12 cycles using an Illumina Nextera XT DNA Library Preparation kit with 96 indices, then assessed by Agilent Tapestation to confirm a peak at 300-800 bp and quantified by Qubit for normalisation to 5 nM.

text: adult

characteristic: developmental stage

text: HIV infection

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: activated memory B cell

text: donor with aviremia

text: not collected

text: human

text: adult

text: HIV infection

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: title


characteristic: External Id

text: UCL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: tissue like memory B cell

text: donor with aviremia

characteristic: clinical information

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: HIV infection

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


text: UCL

text: public

text: ArrayExpress

text: memory B cell

text: broadly neutralizing antibody donor with viremia

text: not collected

text: human

text: adult

characteristic: developmental stage

text: HIV infection

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Core Unit of Bioinformatics Analyses, University Hospital Bonn

characteristic: Submitter Id

text: ArrayExpress

text: microglia

text: not collected

text: house mouse

text: Protocols: All mice were housed in specific-pathogen-free conditions. C57B6/J and 129S2/SvPPasCrl mice were obtained from Charles River Laboratories. Nlrp3KO1293ES mice have been previously described16, and were maintained in-house on a C57B6/J background. Nlrp3fl/fl (strain ID: 12809) mice were obtained from Taconic. Rosa26ERt2Cre mice have been previously described21, and were obtained from Jackson Laboratories (strain ID: 008463) . For BMDMs and GMPs RNA was extracted using Picopure RNA Isolation Kit (Thermofisher) according to manufacturer’s instructions. For microglia, RNA was extracted using RNeasy Mini Kit (Qiagen). Residual DNA was removed using RNAse-Free DNase Set (Qiagen). RNA was assessed for quality and quantity (TapeStation, Agilent). Microglia were purified from adult brain tissue using the Neural Tissue Dissociation Kit (130-092-628, Miltenyi Biotec), Myelin Removal Beads II (130-096-433, Miltenyi Biotec) and CD11b Microglia Microbeads (130-093-636, Miltenyi Biotec) according to manufacturer’s instructions. For GMPs and BMDMs, RNA sequencing libraries were prepared using the NEBNext Ultra RNA Library Prep Kit for Illumina following manufacturer’s instructions (NEB, Ipswich, MA, USA). Briefly, mRNAs were first enriched with Oligo(dT) beads. Enriched mRNAs were fragmented for 15 minutes at 94 °C. First strand and second strand cDNAs were subsequently synthesized. cDNA fragments were end repaired and adenylated at 3’ends, and universal adapters were ligated to cDNA fragments, followed by index addition and library enrichment by limited-cycle PCR. Sequencing libraries were validated using NGS Kit on the Agilent 5300 Fragment Analyzer (Agilent Technologies, Palo Alto, CA, USA), and quantified by using Qubit 4.0 Fluorometer (Invitrogen, Carlsbad, CA). For microglia, 3'mRNA Seq was performed using the QuantSeq 3'mRNA-Seq Library Prep Kit FWD (Lexogen).

characteristic: genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: title


characteristic: External Id

text: Core Unit of Bioinformatics Analyses, University Hospital Bonn

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: microglia

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


text: public

text: ArrayExpress

text: bone marrow derived macrophage

text: not collected

text: house mouse

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: ArrayExpress

text: granulocyte-monocyte progenitor

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


text: CIPH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Croatia

text: unknown

characteristic: host health state

text: Human

characteristic: host scientific name

text: Nasopharyngeal Swab

text: Bordetella pertussis 137

text: Bordetella pertussis 137


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University of Veterinary Medicine Vienna

text: This sample group is the combination of the 3 individual sample accessions: SAMEA114307458, SAMEA114307459, SAMEA114307450

text: Finland

text: Rangifer tarandus tarandus

text: Rangifer tarandus tarandus

text: Input readpairs for reindeerY1320 from three Eurasian tundra reindeer (FR8+FR9+FR10)

characteristic: title


text: Universita degli studi di Milano

text: public

tag: Namespace:Universita degli studi di Milano

characteristic: collection date

text: MC38 tumor bearing mice treated with anti-PD-L1

characteristic: description

text: Switzerland

characteristic: geographic location (country and/or sea)

text: bacterium

text: bacterium


text: Universita degli studi di Milano

text: public

text: MC38 tumor bearing mice treated with anti-PD-L1 + pure apyrase

text: Switzerland

text: bacterium

characteristic: organism

text: bacterium


characteristic: ENA-CHECKLIST

text: Universita degli studi di Milano

text: public

text: MC38 tumor bearing mice treated with anti-PD-L1 + E.colipApyr

text: Switzerland

text: bacterium

text: bacterium


characteristic: ENA-FIRST-PUBLIC

text: Universita degli studi di Milano

text: public

text: MC38 tumor bearing mice treated with anti-PD-L1 + E.colipBAD28

text: Switzerland

text: bacterium

text: bacterium


LS007 HiFi gDNA

characteristic: ENA-LAST-UPDATE

text: John Innes Centre

text: public

text: LS007 HiFi gDNA

tag: Namespace:John Innes Centre

text: LS007 HMW gDNA

characteristic: genotype

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus

text: LS007 HiFi gDNA


text: UNISA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rhizospheric_soil_of_unfertilised_hazelnutnutnut_plants

text: Italy

text: soil metagenome

text: soil metagenome


text: UNISA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Rhizospheric_soil_of_hazelnutnutnut_plants_fertilised_with_synthetic_fertiliser_nitrogen:phosphorus;potassium_(20/10/10)

text: Italy

text: soil metagenome

text: soil metagenome


text: UNISA

text: public

text: Rhizospheric_soil_of_hazelnutnutn_plants_fertilised_sulphur_(90%)_and_bentonite_(10%)

text: Italy

text: soil metagenome

text: soil metagenome


text: UNISA

text: public

text: Rhizospheric_soil_of_hazelnutnut_plants_fertilised_sulphur_(90%)_bentonite_(5%)_and_olive_pomace_(5%)

text: Italy

text: soil metagenome

text: soil metagenome


text: UNISA

text: public

text: Rhizospheric_soil_of_hazelnutnut_plants_fertilised_with_olive_pomace_

text: Italy

text: soil metagenome

text: soil metagenome


text: UNISA

text: public

text: Rhizospheric_soil_of_hazelnutnutnut_plants_fertilised_with_synthetic_fertiliser_nitrogen:phosphorus;potassium

text: Italy

text: soil metagenome

text: soil metagenome


text: UNISA

text: public

text: Rhizospheric_soil_of_hazelnutnut_plants_fertilised_sulphur_(90%)_and_bentonite_(10%)

text: Italy

text: soil metagenome

text: soil metagenome


ACTRM

text: UNISA

text: public

text: ACTRM

text: Italy

text: soil metagenome

text: soil metagenome

text: ACTRM


ANPKM

text: UNISA

text: public

text: ANPKM

text: Italy

text: soil metagenome

text: soil metagenome

text: ANPKM


ASBM

text: UNISA

text: public

text: ASBM

text: Italy

text: soil metagenome

text: soil metagenome

text: ASBM


ASBOPM

text: UNISA

text: public

text: ASBOPM

text: Italy

text: soil metagenome

text: soil metagenome

text: ASBOPM


AOPM

text: UNISA

text: public

text: AOPM

text: Italy

text: soil metagenome

text: soil metagenome

text: AOPM


text: NUS

text: public

text: anthropogenic terrestrial biome

characteristic: broad-scale environmental context

characteristic: common name

text: fecal material

characteristic: environmental medium

text: Singapore

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: urban biome

characteristic: local environmental context

text: human gut metagenome

text: Moderate consumption of probiotic sour beer fermented with Lacticaseibacillus paracasei (formerly Lactobacillus paracasei) on the inflammatory, immunity, lipid profile, and gut microbiome among healthy men

characteristic: project name

text: before treatment

characteristic: sample description

text: human gut metagenome

text: human gut metagenome


characteristic: External Id

text: NUS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: anthropogenic terrestrial biome

characteristic: collection date

text: fecal material

text: Singapore

characteristic: geographic location (country and/or sea)

text: urban biome

text: human gut metagenome

characteristic: organism

text: after treatment

text: human gut metagenome

text: human gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NUS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: anthropogenic terrestrial biome

text: fecal material

text: Singapore

text: urban biome

text: human gut metagenome

text: before control

text: human gut metagenome

text: human gut metagenome


text: NUS

text: public

characteristic: Submitter Id

text: anthropogenic terrestrial biome

characteristic: broad-scale environmental context

characteristic: common name

text: fecal material

characteristic: environmental medium

text: Singapore

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: urban biome

text: human gut metagenome

text: after control

text: human gut metagenome

text: human gut metagenome


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: African malaria mosquito

text: not provided

text: Anopheles funestus

text: Anopheles funestus


text: John Innes Centre

text: public

characteristic: collection date

text: Recombinant Inbred Line A244; Parents LS007 x LSWT11

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Lathyrus sativus

characteristic: organism

text: Lathyrus sativus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: John Innes Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Recombinant Inbred Line A246; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Recombinant Inbred Line A247; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A248; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A249; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A250; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A251; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A252; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A254; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A255; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A257; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A258; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A259; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A260; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A261; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A264; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A265; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A267; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A268; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A269; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A270; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A271; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A272; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A273; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A276; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A277; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A278; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A279; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A280; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: John Innes Centre

text: public

text: Recombinant Inbred Line A281; Parents LS007 x LSWT11

text: United Kingdom

text: Lathyrus sativus

text: Lathyrus sativus


text: Center of Biological Engineering

text: public

tag: Namespace:Center of Biological Engineering

text: VReal metagenome

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: VReal metagenome


text: Center of Biological Engineering

text: public

text: VReal metatranscriptome 1

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: VReal metatranscriptome 1


text: Center of Biological Engineering

text: public

text: VReal metatranscriptome 3

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: VReal metatranscriptome 3


text: Center of Biological Engineering

text: public

text: Hom metagenome

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Hom metagenome


text: Center of Biological Engineering

text: public

text: Hom metatranscriptome 1

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Hom metatranscriptome 1


text: Center of Biological Engineering

text: public

text: Hom metatranscriptome 2

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Hom metatranscriptome 2


text: Center of Biological Engineering

text: public

text: Hom metatranscriptome 3

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Hom metatranscriptome 3


EST

text: Center of Biological Engineering

text: public

text: EST

text: Estearate metagenome

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Estearate


PAL

text: Center of Biological Engineering

text: public

text: PAL

text: Palmitate metagenome

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Palmitate


OL

text: Center of Biological Engineering

text: public

text: OL

text: Oleate metagenome 1

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


OLDES

text: Center of Biological Engineering

text: public

text: OLDES

text: Oleate metagenome 2

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


characteristic: ENA first public

text: Roslin Institute

text: public

tag: Namespace:Roslin Institute

text: Metagenomic sequencing of longitudinal rumen cattle samples

text: United Kingdom

text: bovine gut metagenome

text: bovine gut metagenome


text: Oxford Nanopore Technologies

text: public

tag: Namespace:Oxford Nanopore Technologies

text: human

characteristic: common name

text: RNA pool of in vitro transcribed GAPDH, 18S rRNA, and beta-actin, and enolase2 from Oxford Nanopore Technologies SQK-RNA002 kit

text: Singapore

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: Oxford Nanopore Technologies

text: public

text: Transcriptome extracted from Candida albicans

text: Singapore

text: Candida albicans

text: Candida albicans


characteristic: Age

characteristic: BMI

characteristic: Enterotype

text: F

characteristic: Gender

text: INSERM U955

characteristic: INSDC center name

text: public

text: CRC

characteristic: Status

tag: Namespace:INSERM U955

text: human

characteristic: broad-scale environmental context

text: human

text: Lynch Syndrome Patients with or without Colorectal Neoplasia

text: gut

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: local environmental context

text: Homo sapiens

text: AAS-Lynch-Microbiota

characteristic: project name

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: F

text: INSERM U955

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

characteristic: collection date

text: human

characteristic: description

text: gut

text: France

characteristic: geographic location (country and/or sea)

text: gut

text: Homo sapiens

characteristic: organism

text: AAS-Lynch-Microbiota

text: Homo sapiens

characteristic: title


characteristic: Age

characteristic: BMI

characteristic: Enterotype

characteristic: External Id

text: M

characteristic: Gender

text: INSERM U955

characteristic: INSDC center name

text: public

text: CRC

characteristic: Status

characteristic: Submitter Id

text: human

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: gut

characteristic: environmental medium

text: France

text: gut

text: Homo sapiens

text: AAS-Lynch-Microbiota

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: M

text: INSERM U955

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: human

text: gut

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: local environmental context

text: Homo sapiens

text: AAS-Lynch-Microbiota

characteristic: project name

text: Homo sapiens


characteristic: BMI

text: NO

characteristic: ColoscopyEvent?

characteristic: External Id

text: INSERM U955

characteristic: INSDC center name

text: public

characteristic: age

text: human

characteristic: collection date

text: human

characteristic: description

text: gut

text: Male

characteristic: gender

text: France

characteristic: geographic location (country and/or sea)

text: gut

text: Homo sapiens

characteristic: organism

text: AAS-Lynch-Microbiote

text: Homo sapiens

characteristic: title


text: YES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INSERM U955

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: human

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: gut

characteristic: environmental medium

text: Male

text: France

text: gut

text: Homo sapiens

text: AAS-Lynch-Microbiote

text: Homo sapiens


characteristic: BMI

text: NO

characteristic: ColoscopyEvent?

characteristic: External Id

text: INSERM U955

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: human

text: human

text: gut

text: Female

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut

characteristic: local environmental context

text: Homo sapiens

text: AAS-Lynch-Microbiote

characteristic: project name

text: Homo sapiens


text: YES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INSERM U955

characteristic: INSDC first public

text: public

text: human

characteristic: collection date

text: human

characteristic: description

text: gut

text: Female

characteristic: gender

text: France

characteristic: geographic location (country and/or sea)

text: gut

text: Homo sapiens

characteristic: organism

text: AAS-Lynch-Microbiote

text: Homo sapiens

characteristic: title


characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

text: 5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: IFREMER, Rue de l'Ile d'Yeu 44000 Nantes FRANCE

characteristic: collecting institution

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

unit: m

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Billiers

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: estuarine water

text: AAGTAA

characteristic: multiplex identifiers

unit: µmol/L

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

text: 515F : 5'-GTGYCAGCMGCCGCGGTAA-3 ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3

characteristic: pcr primers

characteristic: phosphate

text: demisel

unit: psu

characteristic: salinity

unit: ºC

characteristic: sample temperature

text: Atttached living bacterial communities at E1 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V4-V5 hypervariable region of the 16S rRNA gene

characteristic: target subfragment

characteristic: temperature

text: bacterial communities associated with a cyanobacterial bloom


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Billiers

text: metagenome

text: surface water

text: estuarine water

characteristic: local environmental context

text: AGAATC

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Free-living bacterial communities at E1 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Billiers

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: estuarine water

text: AACGTC

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

characteristic: phosphate

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Atttached living bacterial communities at E1 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Billiers

text: metagenome

text: surface water

text: estuarine water

characteristic: local environmental context

text: TGTCGT

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Free-living bacterial communities at E1 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Billiers

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: estuarine water

text: GCTTCG

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

characteristic: phosphate

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Atttached living bacterial communities at E1 station during the post-bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Billiers

text: metagenome

text: surface water

text: estuarine water

characteristic: local environmental context

text: GACTTT

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Free-living bacterial communities at E1 station during the post-bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Billiers

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: estuarine water

text: CACTAA

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

characteristic: phosphate

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Atttached living bacterial communities at E2 station during the bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Billiers

text: metagenome

text: surface water

text: estuarine water

characteristic: local environmental context

text: ACATTA

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Free-living bacterial communities at E2 station during the bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Billiers

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: estuarine water

text: CGGAAC

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

characteristic: phosphate

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Atttached living bacterial communities at E2 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Billiers

text: metagenome

text: surface water

text: estuarine water

characteristic: local environmental context

text: ATTTGT

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Free-living bacterial communities at E2 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Billiers

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: estuarine water

text: TTGACT

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

characteristic: phosphate

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Atttached living bacterial communities at E2 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Billiers

text: metagenome

text: surface water

text: estuarine water

characteristic: local environmental context

text: GGGTCT

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Free-living bacterial communities at E2 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: 5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Billiers

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: estuarine water

text: GCCCAC

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

characteristic: phosphate

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at E2 station during the post-bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: IFREMER, Rue de l'Ile d'Yeu 44000 Nantes FRANCE

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: freshwater lake

characteristic: local environmental context

text: GACGAT

text: algal bloom metagenome

characteristic: organism

text: 515F : 5'-GTGYCAGCMGCCGCGGTAA-3 ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F1 station during the pre-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: freshwater lake

text: ATTCTC

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F1 station during the pre-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V4-V5 hypervariable region of the 16S rRNA gene

characteristic: target subfragment

characteristic: temperature

text: bacterial communities associated with a cyanobacterial bloom


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: freshwater lake

characteristic: local environmental context

text: AAAGTA

text: algal bloom metagenome

characteristic: organism

characteristic: phosphate

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F1 station during the bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: freshwater lake

text: AGGCGC

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F1 station during the bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: freshwater lake

characteristic: local environmental context

text: CCAAGC

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F1 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: freshwater lake

text: CGTTAA

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F1 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: freshwater lake

characteristic: local environmental context

text: TCAGCG

text: algal bloom metagenome

characteristic: organism

characteristic: phosphate

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F1 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: freshwater lake

text: AATCCG

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F1 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: freshwater lake

characteristic: local environmental context

text: GCACTG

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F1 station during the post-bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: freshwater lake

text: GTGTAG

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F1 station during the post-bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: river water

characteristic: local environmental context

text: CGAAGG

text: algal bloom metagenome

characteristic: organism

characteristic: phosphate

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F2 station during the pre-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: 5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: river water

text: TTGAAG

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F2 station during the pre-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: IFREMER, Rue de l'Ile d'Yeu 44000 Nantes FRANCE

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: river water

characteristic: local environmental context

text: TGATGC

text: algal bloom metagenome

characteristic: organism

characteristic: phosphate

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F2 station during the bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: river water

text: TAGATC

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

text: 515F : 5'-GTGYCAGCMGCCGCGGTAA-3 ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F2 station during the bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: river water

characteristic: local environmental context

text: CACCTC

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F2 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: V4-V5 hypervariable region of the 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: river water

text: CTTGAC

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F2 station during the post-bloom period- Replica 1

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

text: bacterial communities associated with a cyanobacterial bloom


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: river water

characteristic: local environmental context

text: ATCTAT

text: algal bloom metagenome

characteristic: organism

characteristic: phosphate

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F2 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: river water

text: GTGAAT

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F2 station during the bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequencing by synthesis (Illumina)

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: cyanobacterial bloom

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Oceane Reignier

characteristic: collector name

text: cyanobacteria bloom metagenome

characteristic: common name

text: water

text: water

text: yes

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCE, Morbihan, Muzillac

text: metagenome

text: surface water

text: river water

characteristic: local environmental context

text: TAAATG

text: algal bloom metagenome

characteristic: organism

text: demisel

characteristic: project name

text: Atttached living bacterial communities at F2 station during the post-bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sequencing by synthesis (Illumina)

characteristic: SRA accession

text: 16S rRNA

text: cyanobacterial bloom

text: SeBiMER

text: Oceane Reignier

text: cyanobacteria bloom metagenome

characteristic: depth

text: water

characteristic: environmental medium

text: water

characteristic: environmental package

text: yes

text: France

text: FRANCE, Morbihan, Muzillac

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: surface water

text: river water

text: TTAAGG

characteristic: multiplex identifiers

characteristic: nitrate

text: algal bloom metagenome

characteristic: pH

characteristic: pcr primers

text: demisel

characteristic: salinity

characteristic: sample temperature

text: Free-living bacterial communities at F2 station during the post-bloom period- Replica 2

text: algal bloom metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology, ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institute of Microbiology, ETH Zurich

characteristic: Submitter Id

characteristic: collection date

text: BD03: WISH in DH5a

characteristic: description

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Escherichia coli DH5[alpha]

characteristic: organism

text: Escherichia coli DH5[alpha]

characteristic: title


text: Institute of Microbiology, ETH Zurich

text: public

characteristic: SRA accession

text: BD03: WISH in At-LSPHERE

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Axenic_Inoc

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_1_BD04: Axenic_Inoc


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Inoc_Mix_Inoc

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_2_BD04: Inoc_Mix_Inoc


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Ioc_Slope_Inoc

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_3_BD04: Ioc_Slope_Inoc


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Slope_146

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_4_BD04: Slope_146


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Slope_149

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_5_BD04: Slope_149


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Slope_157

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_6_BD04: Slope_157


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Slope_160

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_7_BD04: Slope_160


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Slope_171

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_8_BD04: Slope_171


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Slope_174

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_9_BD04: Slope_174


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Slope_153

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_10_BD04: Slope_153


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 1_74

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_11_BD04: 1_74


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 1_77

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_12_BD04: 1_77


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 1_85

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_13_BD04: 1_85


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.1_75

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_14_BD04: 0.1_75


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.1_78

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_15_BD04: 0.1_78


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.1_86

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_16_BD04: 0.1_86


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.01_109

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_17_BD04: 0.01_109


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.01_112

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_18_BD04: 0.01_112


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.01_123

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_19_BD04: 0.01_123


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.001_110

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_20_BD04: 0.001_110


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.001_113

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_21_BD04: 0.001_113


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.001_121

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_22_BD04: 0.001_121


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.0001_111

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_23_BD04: 0.0001_111


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: 0.0001_114

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf131_24_BD04: 0.0001_114


text: Institute of Microbiology, ETH Zurich

text: public

text: BD04: Axenic_Inoc

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257_1_BD04: Axenic_Inoc


BD04_Leaf257 _2

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _2

text: BD04: Inoc_Mix_Inoc

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _2_BD04: Inoc_Mix_Inoc


BD04_Leaf257 _3

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _3

text: BD04: Ioc_Slope_Inoc

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _3_BD04: Ioc_Slope_Inoc


BD04_Leaf257 _4

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _4

text: BD04: Slope_73

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _4_BD04: Slope_73


BD04_Leaf257 _5

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _5

text: BD04: Slope_76

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _5_BD04: Slope_76


BD04_Leaf257 _6

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _6

text: BD04: Slope_87

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _6_BD04: Slope_87


BD04_Leaf257 _7

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _7

text: BD04: Slope_90

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _7_BD04: Slope_90


BD04_Leaf257 _8

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _8

text: BD04: Slope_98

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _8_BD04: Slope_98


BD04_Leaf257 _9

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _9

text: BD04: Slope_101

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _9_BD04: Slope_101


BD04_Leaf257 _10

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _10

text: BD04: Slope_80

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _10_BD04: Slope_80


BD04_Leaf257 _11

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _11

text: BD04: 1_1

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _11_BD04: 1_1


BD04_Leaf257 _12

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _12

text: BD04: 1_4

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _12_BD04: 1_4


BD04_Leaf257 _13

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _13

text: BD04: 1_15

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _13_BD04: 1_15


BD04_Leaf257 _14

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _14

text: BD04: 0.1_2

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _14_BD04: 0.1_2


BD04_Leaf257 _15

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _15

text: BD04: 0.1_5

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _15_BD04: 0.1_5


BD04_Leaf257 _16

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _16

text: BD04: 0.1_13

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _16_BD04: 0.1_13


BD04_Leaf257 _17

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _17

text: BD04: 0.01_3

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _17_BD04: 0.01_3


BD04_Leaf257 _18

text: Institute of Microbiology, ETH Zurich

text: public

text: BD04_Leaf257 _18

text: BD04: 0.01_6

text: Switzerland

text: synthetic metagenome

text: synthetic metagenome

text: BD04_Leaf257 _18_BD04: 0.01_6