text: UCSDMI

text: public

text: Within last week antibiotics

text: no

characteristic: antidepressant

text: no

characteristic: antidiabetics

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

characteristic: description

text: no

characteristic: diagnosis

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: yes

characteristic: fistula

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: yes

text: Pancreatic head resection

characteristic: longitude

text: Decimal degrees

text: no

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: unknown

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: BL

text: Traverso


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: More than 6 months no antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: no

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: no

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: yes

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: 11-20 cigarettes/day

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


text: UCSDMI

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: no

characteristic: antidiabetics

text: no

text: no

text: no

text: yes

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

characteristic: description

text: no

characteristic: diagnosis

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: no

characteristic: fistula

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: yes

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: More than 1 month no antibiotics

text: no

text: yes

text: no

text: no

text: no

text: no

text: not collected

text: Former chronic alcohol consumption

text: no

text: no

text: relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: yes

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: Drainage prolonged

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: yes

characteristic: immunosuppressant

text: no

text: yes

characteristic: insuline

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: yes

text: Left resection

characteristic: longitude

text: Decimal degrees

text: no

text: no

text: no

text: no

text: No

text: yes

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: yes

text: no

text: yes

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: Grade B

text: Left resection


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

text: public

text: Greenhouse

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

characteristic: description

characteristic: elevation

text: soil

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: pot experiment

characteristic: local environmental context

text: soil metagenome

text: Inter- and intraspecific plant-soil feedbacks of grass species.

characteristic: project name

text: soil metagenome

text: Microbial communities


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Greenhouse

text: soil

text: Netherlands

text: not collected

text: not collected

text: pot experiment

text: soil metagenome

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Instituto de Quimica Biologica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Consejo Nacional de Investigaciones Cientificas y Tecnicas, Buenos Aires, Argentina

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples were collected by centrifugation and cells were disrupted in liquid nitrogen using ceramic mortar and pestle. Staphylococcus aureus USA300 and Pseudomonas aeruginosa PAO1 were used throughout this work. For cultures microaerobic cultures were grown in Triptic Soy Broth (TSB) supplemented with 0.5% KNO3, in sealed bottles using a 1:4 medium-to-flask volume ratio without agitation. S. aureus and P. aeruginosa monocultures were inoculated at a DO600 of 0.05 and incubated for 2h at 37°C. After that, cultures were split in two and further incubated for 2h at 37°C (control) or 39°C (heat shock). A similar protocol was employed for co-culture experiments, where S. aureus and P. aeruginosa were co-inoculated at a DO600 of 0.05 each. RNA was isolated using TRI Reagent following standard procedure according to manufacturer’s instruction (MRC). In short, the cell pellets were grounded with ceramic mortar and pestle while frozen in liquid nitrogen. It was Key to grind the pellet and keep grinding after addition TRI-reagent directly to the mortar. The omission of this steps dramatically lowers staphylococcus RNA isolation. After RNA isolation, DNA was degraded by addition of RNAse-free DNAse. The sample was then repurified using RBC (Bioamerica) total RNA extraction Kit. Libraries were prepared by Novogene Corporation Inc. ribosomal RNA was depleted prior library construction.

text: wild type genotype

characteristic: genotype

text: co-culture with Staphylococcus aureus subsp. aureus USA300

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Pseudomonas aeruginosa PAO1

characteristic: organism

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

characteristic: stimulus

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Instituto de Quimica Biologica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Consejo Nacional de Investigaciones Cientificas y Tecnicas, Buenos Aires, Argentina

text: public

text: ArrayExpress

characteristic: description

text: wild type genotype

text: not applicable

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: wild type genotype

text: not applicable

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: heat shock


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: wild type genotype

text: not applicable

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: wild type genotype

text: not applicable

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: heat shock


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: not applicable

text: Staphylococcus aureus subsp. aureus USA300


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: not applicable

text: heat shock


E-MTAB-12584:Sample 14

text: public

text: E-MTAB-12584:Sample 14

tag: Namespace:Institute of Immunobiology, Kantonsspital St. Gallen, St. Gallen, Switzerland

unit: year

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Two pieces of tissue were obtained from patients that went through endomyocardial biopsy as part of the clinical routine practice of diagnostic or follow up procedure. For enzymatic dissociation hearts were minced into small pieces and were placed into a six-well dish filled with RPMI 1640 medium containing 2% FCS, 20 mM HEPES (Lonza), 1 mg/ml collagenase D (Sigma), and 25 μg/ml DNase I (Applichem) and incubated at 37°C under continuous stirring. The remaining tissue pieces were mechanically disrupted. Nuclei were isolated from frozen patient derived EMBs and sorted to enrich intact nuclei using a BDFACSMelody. Sorted single nuclei suspensions were emulsified for library generation using the droplet-based 10x Chromium (10x Genomics) system. cDNA library generation was performed following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v3 Chemistry).

text: adult

characteristic: developmental stage

text: cardiac transplant

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 14


E-MTAB-12584:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Immunobiology, Kantonsspital St. Gallen, St. Gallen, Switzerland

text: public

text: E-MTAB-12584:Sample 15

text: ArrayExpress

text: human

characteristic: description

text: adult

text: cardiac transplant

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: female

text: Sample 15

characteristic: title


E-MTAB-12584:Sample 13

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12584:Sample 13

text: ArrayExpress

text: human

text: adult

text: cardiac transplant

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 13


E-MTAB-12584:Sample 16

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12584:Sample 16

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: cardiac transplant

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 16


E-MTAB-12584:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12584:Sample 17

text: ArrayExpress

text: human

text: adult

text: cardiac transplant

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 17


E-MTAB-12584:Sample 18

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12584:Sample 18

text: ArrayExpress

text: human

characteristic: description

text: adult

text: myocarditis

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: female

text: Sample 18

characteristic: title


E-MTAB-12584:Sample 19

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12584:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: myocarditis

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 19


E-MTAB-12584:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12584:Sample 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: myocarditis

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 1


E-MTAB-12584:Sample 2

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12584:Sample 2

text: ArrayExpress

text: human

text: adult

text: dilated cardiomyopathy

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 2


E-MTAB-12584:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12584:Sample 3

text: ArrayExpress

text: human

characteristic: description

text: adult

text: cardiomyopathy

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 3

characteristic: title


E-MTAB-12584:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12584:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: cardiomyopathy

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 4


E-MTAB-12584:Sample 5

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12584:Sample 5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: cardiomyopathy

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 5


E-MTAB-12584:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12584:Sample 6

text: ArrayExpress

text: human

text: adult

text: cardiomyopathy

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart left ventricle

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 6


E-MTAB-12584:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12584:Sample 20

text: ArrayExpress

text: human

characteristic: description

text: adult

text: cardiomyopathy

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: female

text: Sample 20

characteristic: title


E-MTAB-12584:Sample 21

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12584:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: myocarditis

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: female

text: Sample 21


E-MTAB-12584:Sample 22

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12584:Sample 22

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: cardiomyopathy

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 22


E-MTAB-12584:Sample 23

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12584:Sample 23

text: ArrayExpress

text: human

text: adult

text: cardiomyopathy

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 23


E-MTAB-12584:Sample 7

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12584:Sample 7

text: ArrayExpress

text: human

characteristic: description

text: adult

text: dilated cardiomyopathy

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 7

characteristic: title


E-MTAB-12584:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12584:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: myocarditis

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart left ventricle

text: Homo sapiens

text: male

text: Sample 8


E-MTAB-12584:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12584:Sample 9

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: cardiac transplant

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 9


E-MTAB-12584:Sample 10

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12584:Sample 10

text: ArrayExpress

text: human

text: adult

text: cardiac transplant

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart right ventricle

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 10


E-MTAB-12584:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12584:Sample 11

text: ArrayExpress

text: human

characteristic: description

text: adult

text: dilated cardiomyopathy

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart right ventricle

text: Homo sapiens

text: male

text: Sample 11

characteristic: title


E-MTAB-12584:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12584:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: cardiomyopathy

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: heart left ventricle

text: Homo sapiens

text: male

text: Sample 12


E-MTAB-12589:Sample 17

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 17

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Euthanized animals were perfused with 20 ml of PBS before hearts were harvested. For enzymatic dissociation hearts were minced into small pieces and were placed into a six-well dish filled with RPMI 1640 medium containing 2% FCS, 20 mM HEPES (Lonza), 1 mg/ml collagenase D (Sigma), and 25 μg/ml DNase I (Applichem) and incubated at 37°C under continuous stirring. The remaining tissue pieces were mechanically disrupted. For analysis of total cardiac cells, single cell suspensions of freshly isolated murine hearts were sorted for total live cells using a BDFACSMelody. Fibroblast samples were sorted for live CD45-CD31-PDPN+ cells using a BDFACSMelody. Sorted single cells suspensions were emulsified for library generation using the droplet-based 10x Chromium (10x Genomics) system. cDNA library generation was performed following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v3 Chemistry).

text: adult

characteristic: developmental stage

text: myocarditis

text: MYH6-specific TCR transgene

characteristic: genotype

text: Sample 17

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female

text: BALB/c

characteristic: strain

text: Sample 17


E-MTAB-12589:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 1

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: normal

characteristic: disease

text: wild type genotype

text: Sample 1

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: BALB/c

text: Sample 1


E-MTAB-12589:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12589:Sample 20

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Sample 20

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

text: Sample 20

characteristic: title


E-MTAB-12589:Sample 21

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 21

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

characteristic: genotype

text: Sample 21

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female

text: BALB/c

characteristic: strain

text: Sample 21


E-MTAB-12589:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 9

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: myocarditis

characteristic: disease

text: MYH6-specific TCR transgene

text: Sample 9

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: BALB/c

text: Sample 9


E-MTAB-12589:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12589:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: myocarditis

text: MYH6-specific TCR transgene

text: Sample 10

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

text: Sample 10

characteristic: title


E-MTAB-12589:Sample 19

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 19

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: myocarditis

text: MYH6-specific TCR transgene

characteristic: genotype

text: Sample 19

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

characteristic: strain

text: Sample 19


E-MTAB-12589:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 2

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: normal

characteristic: disease

text: wild type genotype

text: Sample 2

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: BALB/c

text: Sample 2


E-MTAB-12589:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12589:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Sample 16

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: female

text: BALB/c

text: Sample 16

characteristic: title


E-MTAB-12589:Sample 5

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: myocarditis

text: MYH6-specific TCR transgene

characteristic: genotype

text: Sample 5

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

characteristic: strain

text: Sample 5


E-MTAB-12589:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 15

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: normal

characteristic: disease

text: wild type genotype

text: Sample 15

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: BALB/c

text: Sample 15


E-MTAB-12589:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12589:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: myocarditis

text: MYH6-specific TCR transgene

text: Sample 6

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

text: Sample 6

characteristic: title


E-MTAB-12589:Sample 3

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

characteristic: genotype

text: Sample 3

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female

text: BALB/c

characteristic: strain

text: Sample 3


E-MTAB-12589:Sample 22

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 22

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: myocarditis

characteristic: disease

text: MYH6-specific TCR transgene

text: Sample 22

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: BALB/c

text: Sample 22


E-MTAB-12589:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12589:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Sample 4

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: female

text: BALB/c

text: Sample 4

characteristic: title


E-MTAB-12589:Sample 11

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 11

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Euthanized animals were perfused with 20 ml of PBS before hearts were harvested. Mice were treated i.p. twice per week with 200 µg of 14-D10-2 anti-Gremlin monoclonal antibodies or IgG2b isotype control. For enzymatic dissociation hearts were minced into small pieces and were placed into a six-well dish filled with RPMI 1640 medium containing 2% FCS, 20 mM HEPES (Lonza), 1 mg/ml collagenase D (Sigma), and 25 μg/ml DNase I (Applichem) and incubated at 37°C under continuous stirring. The remaining tissue pieces were mechanically disrupted. For analysis of total cardiac cells, single cell suspensions of freshly isolated murine hearts were sorted for total live cells using a BDFACSMelody. Fibroblast samples were sorted for live CD45-CD31-PDPN+ cells using a BDFACSMelody. Sorted single cells suspensions were emulsified for library generation using the droplet-based 10x Chromium (10x Genomics) system. cDNA library generation was performed following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v3 Chemistry).

text: adult

characteristic: developmental stage

text: myocarditis

text: MYH6-specific TCR transgene

characteristic: genotype

text: Sample 11

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

characteristic: strain

text: Sample 11


E-MTAB-12589:Sample 23

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 23

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: myocarditis

characteristic: disease

text: MYH6-specific TCR transgene

text: Sample 23

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: BALB/c

text: Sample 23


E-MTAB-12589:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12589:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: myocarditis

text: MYH6-specific TCR transgene

text: Sample 7

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: female

text: BALB/c

text: Sample 7

characteristic: title


E-MTAB-12589:Sample 12

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: myocarditis

text: MYH6-specific TCR transgene

characteristic: genotype

text: Sample 12

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

characteristic: strain

text: Sample 12


E-MTAB-12589:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 8

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: myocarditis

characteristic: disease

text: MYH6-specific TCR transgene

text: Sample 8

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: BALB/c

text: Sample 8


E-MTAB-12589:Sample 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12589:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: myocarditis

text: MYH6-specific TCR transgene

text: Sample 13

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: BALB/c

text: Sample 13

characteristic: title


E-MTAB-12589:Sample 18

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-12589:Sample 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: myocarditis

text: MYH6-specific TCR transgene

characteristic: genotype

text: Sample 18

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female

text: BALB/c

characteristic: strain

text: Sample 18


E-MTAB-12589:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-12589:Sample 14

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: myocarditis

characteristic: disease

text: MYH6-specific TCR transgene

text: Sample 14

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: BALB/c

text: Sample 14


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Endocrinology, Nutrition, Diabetes and Obesity Instituto de Investigacion del Principado de Asturias

characteristic: Submitter Id

text: ArrayExpress

characteristic: clinical information

text: human

text: Protocols: Overnight fating peripheral blood samples from all subjects were collected in EDTA-containing Vacutainer tubes (BD Biosciences). Blood samples were immediately centrifuged at 2000 x rpm for 15 minutes at 4˚C. The top layer containing the plasma was divided into aliquots and stored at -80˚C until further analysis. Total RNA was isolated from 200 µl of plasma using the miRNeasy Serum/Plasma kit (Qiagen, Germany) in accordance with the manufacturer’s recommendations. 2µg of total RNA per sample were used as input material for small-RNA cDNA libraries generation using NEBNext Multiplex Small RNA Library Prep Set for Illumina® (New England Biolabs, United States).

text: adult

text: normal

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Endocrinology, Nutrition, Diabetes and Obesity Instituto de Investigacion del Principado de Asturias

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male


characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: normal

characteristic: disease

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood plasma

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: no associated comorbidity

characteristic: clinical information

text: human

text: adult

text: type 1 diabetes mellitus

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: no associated comorbidity

text: human

text: adult

text: type 1 diabetes mellitus

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: female

characteristic: title


text: DTU-GE

characteristic: INSDC first public

text: public

text: DTU-GE

text: Listeria monocytogenes sample 001

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 002

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 003

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Listeria monocytogenes sample 004

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

characteristic: INSDC status

text: DTU-GE

text: Listeria monocytogenes sample 005

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

characteristic: SRA accession

text: DTU-GE

text: Listeria monocytogenes sample 006

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

text: Listeria monocytogenes sample 007

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 008

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 009

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 010

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 011

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 012

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 013

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 014

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 015

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 016

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 017

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 018

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 019

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 020

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 021

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 022

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 023

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 024

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 025

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 026

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 027

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 028

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 029

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 030

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 031

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 032

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 033

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 034

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 035

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 036

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 037

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 038

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 039

text: Poland

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 040

text: Poland

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 041

text: Poland

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 042

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 043

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 044

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 045

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 046

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 047

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 048

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 049

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 050

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 051

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 052

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 053

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 054

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 055

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 056

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 057

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 058

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 059

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 060

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 061

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 062

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 063

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 064

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 065

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 066

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 067

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 068

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 069

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 070

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 071

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 072

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 073

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 074

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 075

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 076

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 077

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 078

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 079

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 080

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 081

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 082

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 083

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 084

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 085

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 086

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 087

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 088

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 089

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 090

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 091

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 092

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 093

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 094

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 095

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 096

text: Denmark

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 097

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 098

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 099

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 100

text: Denmark

text: Food processing environment

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 161

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 162

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 163

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 164

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 165

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 166

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 167

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 168

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Listeria monocytogenes sample 169

text: Denmark

text: Laboratory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

tag: Namespace:Instituto Nacional de Tecnologia Agropecuaria

text: Argentina:Mendoza:La Consulta,33.73S 69.12W,15-Oct-2014,S. Panonto

text: Thrips trehernei

text: Thrips trehernei


text: Instituto Nacional de Tecnologia Agropecuaria

text: public

text: Argentina:Mendoza:El Carrizal,32.33S 68.78W,07-Sep-2010,C. de Borbon

text: Thrips tabaci

text: Thrips tabaci


text: public

text: western flower thrips

characteristic: common name

text: Argentina:Mendoza: Valle del Sol,33.75S 68.81W,21-Nov-2010,C. de Borbon

text: Frankliniella occidentalis

text: Frankliniella occidentalis


characteristic: ENA-CHECKLIST

text: public

text: Argentina:Corrientes: Bella Vista,28.51S 59.03W,29-Aug-2012,C. de Borbon

text: Frankliniella insularis

text: Frankliniella insularis


characteristic: ENA-FIRST-PUBLIC

text: public

text: Argentina:Neuquen:Parque Nacional Lanin,40.13S 71.35W,01-Nov-2011,C. de Borbon

text: Frankliniella australis

text: Frankliniella australis


text: Vaiomer

characteristic: INSDC center name

text: public

text: house mouse

text: colostrum

text: Mus musculus

text: Mus musculus

text: Feces

characteristic: tissue

text: colostrum


text: Vaiomer

text: public

text: house mouse

text: mature

text: Mus musculus

text: Mus musculus

text: Feces

text: mature


text: Vaiomer

text: public

text: house mouse

text: Colostrum

text: Mus musculus

text: Mus musculus

text: Feces

text: Colostrum


text: Vaiomer

text: public

text: house mouse

text: Mature

text: Mus musculus

text: Mus musculus

text: Feces

text: Mature


text: public

tag: Namespace:iBB-Institute for Bioengineering and Biosciences, Instituto Superior Tecnico, Universidade de Lisboa, 1049-001 Lisbon, Portugal

text: ArrayExpress

characteristic: broker name

text: Protocols: B. cenocepacia growth in NGMII medium was collected with M9 buffer and then preserved in Trizol reagent Total RNA extraction was performed with the reagent TRIzol™ following the manufacturer's instructions. The bacterial RNA enrichment was achieved using the Cappable-seq for prokaryotic transcription start site (TSS) determination (New England Biolabs®Inc., NEB). This method consists of capping the 5' triphosphorylated RNA with 3'- desthiobiotin-TEG-guanosine 5' triphosphate (DTBGTP) (NEB) using the vaccinia capping enzyme (VCE) (NEB) for reversible binding of biotinylated RNA species to streptavidin. The Cappable-seq enriched RNAs were first poly(A)-tailed using poly(A) polymerase. Then, the 5'PPP structures were converted into 5' monophosphate ends using CapClip Acid Pyrophosphatase (Cellscript). Afterwards, an RNA adapter was ligated to the 5'-monophosphate of the RNA. First-strand cDNA synthesis was performed using an oligo(dT)-adapter primer and the M-MLV reverse transcriptase. The resulting cDNAs were PCR-amplified to about 10-20 ng/μl using a high-fidelity DNA polymerase.The cDNAs were purified using the Agencourt AMPure XP kit (Beckman Coulter Genomics). The cDNA pool was size fractionated in the size range of 200 - 550 bp using a preparative agarose gel. The 3’ and 5’ adapters and the primers used for PCR amplification were designed for TruSeq sequencing according to the instructions of Illumina.

text: wild type genotype

characteristic: genotype

characteristic: infect

text: not applicable

characteristic: isolate

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

characteristic: organism part

text: Burkholderia cenocepacia


text: iBB-Institute for Bioengineering and Biosciences, Instituto Superior Tecnico, Universidade de Lisboa, 1049-001 Lisbon, Portugal

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: description

text: wild type genotype

text: not applicable

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Protocols: C. elegans infected with B. cenocepacia were collected with M9 buffer and then preserved in Trizol reagent Total RNA extraction was performed with the reagent TRIzol™ following the manufacturer's instructions. The bacterial RNA enrichment was achieved using the Cappable-seq for prokaryotic transcription start site (TSS) determination (New England Biolabs®Inc., NEB). This method consists of capping the 5' triphosphorylated RNA with 3'- desthiobiotin-TEG-guanosine 5' triphosphate (DTBGTP) (NEB) using the vaccinia capping enzyme (VCE) (NEB) for reversible binding of biotinylated RNA species to streptavidin. The Cappable-seq enriched RNAs were first poly(A)-tailed using poly(A) polymerase. Then, the 5'PPP structures were converted into 5' monophosphate ends using CapClip Acid Pyrophosphatase (Cellscript). Afterwards, an RNA adapter was ligated to the 5'-monophosphate of the RNA. First-strand cDNA synthesis was performed using an oligo(dT)-adapter primer and the M-MLV reverse transcriptase. The resulting cDNAs were PCR-amplified to about 10-20 ng/μl using a high-fidelity DNA polymerase.The cDNAs were purified using the Agencourt AMPure XP kit (Beckman Coulter Genomics). The cDNA pool was size fractionated in the size range of 200 - 550 bp using a preparative agarose gel. The 3’ and 5’ adapters and the primers used for PCR amplification were designed for TruSeq sequencing according to the instructions of Illumina.

text: wild type genotype

text: Caenorhabditis elegans

text: not applicable

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia


characteristic: ENA-CHECKLIST

text: EMBL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: C57BL/6 Foxp3GFP-tdT replicate1

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

text: house mouse

text: C57BL/6 Foxp3GFP-Fth∆/∆-tdT Knock-out replicate1

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: house mouse

text: C57BL/6 Foxp3GFP-tdT replicate2

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: house mouse

text: C57BL/6 Foxp3GFP-Fth∆/∆-tdT Knock-out replicate2

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: house mouse

text: C57BL/6 Foxp3GFP-tdT replicate3

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: house mouse

text: C57BL/6 Foxp3GFP-Fth∆/∆-tdT Knock-out replicate3

text: Mus musculus

text: Mus musculus


E-MTAB-12600:ATM-KO clone 1 ct

text: public

text: E-MTAB-12600:ATM-KO clone 1 ct

tag: Namespace:The Azrieli Center for Stem Cells and Genetic Research, Department of Genetics, The Alexander Silberman Institute of Life Sciences

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

text: Protocols: Cells were washed with PBS, trypsinized, and kept in -80 until RNA extraction. ATM-KO colonies formed out of single cells were plated on mouse feeder cells in 6-well plates. Cells were treated with 10uM LATS1/2 inhibitor (TRULI, Lats-IN-1) for 24h or left untreated RNA was extracted using NucleoSpin RNA Plus kit mRNA fraction of total RNA was enriched by pulldown of poly(A)-RNA. RNA sequencing libraries were generated using TruSeq RNA Library Prep Kit (Illumina) according to the manufacturer's protocol.

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: ATM -/-

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: female

characteristic: sex

text: ATM-KO clone 1 ct


E-MTAB-12600:ATM-KO clone 1 LATSi

text: The Azrieli Center for Stem Cells and Genetic Research, Department of Genetics, The Alexander Silberman Institute of Life Sciences

characteristic: INSDC first public

text: public

text: E-MTAB-12600:ATM-KO clone 1 LATSi

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: description

text: embryo stage

text: normal

text: ATM -/-

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: Homo sapiens

text: female

text: ATM-KO clone 1 LATSi


E-MTAB-12600:ATM-KO clone 2 ct

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12600:ATM-KO clone 2 ct

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: ATM -/-

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: female

text: ATM-KO clone 2 ct

characteristic: title


E-MTAB-12600:ATM-KO clone 2 LATSi

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-12600:ATM-KO clone 2 LATSi

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: common name

text: embryo stage

text: normal

text: ATM -/-

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens

text: female

text: ATM-KO clone 2 LATSi


text: INRAE

characteristic: INSDC center name

text: public

text: Rodent facility

characteristic: broad-scale environmental context

characteristic: collection date

text: Norway rat

text: Fed rat W5-25

text: Feces

characteristic: environmental medium

text: Diet

characteristic: experimental factor

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: F344 rat

characteristic: host common name

characteristic: host diet

text: Adult

characteristic: host life stage

text: Digestive tract

characteristic: local environmental context

text: Rattus norvegicus

characteristic: pcr primers

characteristic: project name

text: Rattus norvegicus

text: Feces

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: Cooked meat without Nitrites


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Rodent facility

text: Norway rat

characteristic: common name

text: Fed rat W5-26

characteristic: description

text: Feces

text: Diet

text: France

text: F344 rat

text: Adult

text: Digestive tract

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: Feces

text: 16S rRNA

text: Cooked meat without Nitrites

characteristic: title


text: INRAE

characteristic: INSDC center name

text: public

text: Rodent facility

characteristic: broad-scale environmental context

characteristic: collection date

text: Norway rat

text: Fed rat W5-27

text: Feces

characteristic: environmental medium

text: Diet

characteristic: experimental factor

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: F344 rat

characteristic: host common name

characteristic: host diet

text: Adult

characteristic: host life stage

text: Digestive tract

characteristic: local environmental context

text: Rattus norvegicus

characteristic: pcr primers

text: Rattus norvegicus

text: Feces

text: 16S rRNA

text: Cooked meat without Nitrites


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Rodent facility

text: Norway rat

characteristic: common name

text: Fed rat W5-28

text: Feces

text: Diet

text: France

text: F344 rat

text: Adult

text: Digestive tract

text: Rattus norvegicus

characteristic: project name

text: Rattus norvegicus

text: Feces

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: Cooked meat without Nitrites


text: INRAE

characteristic: INSDC center name

text: public

text: Rodent facility

characteristic: broad-scale environmental context

characteristic: collection date

text: Norway rat

text: Fed rat W5-29

characteristic: description

text: Feces

characteristic: environmental medium

text: Diet

characteristic: experimental factor

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: F344 rat

characteristic: host common name

characteristic: host diet

text: Adult

text: Digestive tract

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: Feces

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text: Cooked meat with Vegetable Stocks