text: NTNU University Museum

text: public

text: Reindeer sample R36

text: Rangifer tarandus platyrhyncus

text: Rangifer tarandus platyrhyncus


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Leiden University, Leiden Academic Centre for Drug Research (LACDR), department of Drug Development and Safety

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HepaRG

text: hepatocyte

text: human

characteristic: common name

text: Protocols: Following exposure, cell cultures were washed once with DPBS without calcium and magnesium chloride (Sigma-Aldrich, #D8537). Thereafter, cells were lysed with 50 µL lysis buffer (1:1 DPBS and 2x TempO‐Seq lysis buffer, BioSpyder, mixed ex tempore) for 15 minutes at room temperature and stored at ‐80°C, sealed with an aluminium silver seal (Greiner Bio-One, #676090). PHH (10-donor, LIVERPOOL Cryoplateable Hepatocytes; BioIVT, #X008001-P) were thawed in 25 mL Sekisui XenoTech OptiThaw Hepatocyte Kit (Tebu-bio, #K8000) and centrifuged at 100x g for 10 minutes. Pellet was resuspended in INVITROGRO CP medium (BioIVT, #Z99029) supplemented with TORPEDO antibiotics mix (BioIVT, #Z990007) and seeded at a density of 70,000 cells per well in BioCoat Collagen-I-coated 96-wells plates (Corning, #354407). After 6 hours, PHH were washed with Dulbecco’s phosphate-buffered saline (DPBS) to remove dead cells. PHH were overlaid with 100 µl 0.25 mg/mL cooled Matrigel™ (BD Biosciences, #354230) in INVITROGRO HI medium (BioIVT, #Z99009) supplemented with TORPEDO antibiotics mix (BioIVT, #Z990007) to create a collagen-Matrigel™ sandwich. Cryopreserved differentiated HepaRG® cells (Biopredic International, #HPR116-TA08) were thawed and seeded (day one) according to the manufacturer’s protocol. In short, 72,000 viable cells per well were seeded in collagen-coated (Corning #354236, 0.1 mg/ml in 0.02N acetic acid) 96-well plates (Falcon® #353072) in 100 µL basal hepatic cell medium (Biopredic International, #32551) supplemented with HepaRG® Thawing/Plating/General Purpose Medium (Biopredic International, #ADD670). On the second day of culture, the medium was changed to 100 µL basal hepatic cell medium with HepaRG® Maintenance/Metabolism Medium (Biopredic International, #ADD620) and subsequently renewed on days four and seven. PHH were exposed to the compounds in 100 µL INVITROGRO HI medium (BioIVT, #Z99009) supplemented with TORPEDO antibiotics mix (BioIVT, #Z990007) 24 hours after plating. On day eight in culture, HepaRG® cells were exposed to the compounds in 100 µL basal hepatic cell medium with serum-free HepaRG® Induction Medium (Biopredic International, #ADD650). Cell lysates were analysed at BioClavis (Glasgow, UK) using TempO-Seq targeted RNA sequencing technology with the human whole-transcriptome probeset version 2.0 according to their standard protocol. In TempO-Seq, each Detector Oligo consists of a sequence complementary to an mRNA target plus a universal (i.e. same for every targeted gene) primer binding site. They anneal in immediate juxtaposition to each other on the targeted RNA template such that they can be ligated together. Ligated detector oligos are PCR-amplified using a primer set (single-plex PCR reaction, with a single primer pair for each sample) that introduces both the adaptors required for sequencing and a sample-specific barcode. The barcode sequences flank the target sequence and are inserted appropriately into the standard Illumina adaptors to permit standard dual-index sequencing of the barcodes and deconvolution of sample-specific reads from the sequencing data using the standard Illumina software. All the PCR-amplified and barcoded samples are pooled into a single library for sequencing. Sequencing reads are demultiplexed using the standard sequencing instrument software for each sample using the barcodes to give a FASTQ file for each. Cell lysates were analysed at BioClavis (Glasgow, UK) using TempO-Seq targeted RNA sequencing technology with the human whole-transcriptome probeset version 2.0 according to their standard protocol. In TempO-Seq, each Detector Oligo consists of a sequence complementary to an mRNA target plus a universal (i.e. same for every targeted gene) primer binding site. They anneal in immediate juxtaposition to each other on the targeted RNA template such that they can be ligated together. Ligated detector oligos are PCR-amplified using a primer set (single-plex PCR reaction, with a single primer pair for each sample) that introduces both the adaptors required for sequencing and a sample-specific barcode. The barcode sequences flank the target sequence and are inserted appropriately into the standard Illumina adaptors to permit standard dual-index sequencing of the barcodes and deconvolution of sample-specific reads from the sequencing data using the standard Illumina software. All the PCR-amplified and barcoded samples are pooled into a single library for sequencing. Sequencing reads are demultiplexed using the standard sequencing instrument software for each sample using the barcodes to give a FASTQ file for each.

characteristic: description

text: adult

characteristic: developmental stage

text: hepatocellular carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

characteristic: replicate

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leiden University, Leiden Academic Centre for Drug Research (LACDR), department of Drug Development and Safety

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HepaRG

text: hepatocyte

text: human

text: adult

text: hepatocellular carcinoma

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: hepatocyte

text: human

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

characteristic: description

characteristic: developmental stage

characteristic: disease

text: not applicable

text: synthetic construct

text: synthetic construct

text: synthetic construct


text: INRAE

text: public

text: rainbow trout

characteristic: common name

text: Sperm cryopreserved with DMSO

text: Oncorhynchus mykiss

characteristic: organism

text: Oncorhynchus mykiss


text: INRAE

text: public

text: rainbow trout

text: Sperm fresh

text: Oncorhynchus mykiss

text: Oncorhynchus mykiss

characteristic: title


characteristic: ENA-CHECKLIST

text: INRAE

text: public

text: rainbow trout

text: Sperm cryopreserved with glycerol

text: Oncorhynchus mykiss

text: Oncorhynchus mykiss


characteristic: ENA-FIRST-PUBLIC

text: INRAE

text: public

text: rainbow trout

text: Sperm cryopreserved with methanol

text: Oncorhynchus mykiss

text: Oncorhynchus mykiss


Wickerhamomyces anomalus WaF17.12

characteristic: ENA-LAST-UPDATE

text: A

text: public

text: Wickerhamomyces anomalus WaF17.12

text: Analysis of 16S Miseq in yeast isolated from Anopheles stephensi mosquito

text: fungus metagenome

text: Endobacteria in the mosquito symbiont yeast Wickerhamomyces anomalus (PRJEB60150 )

characteristic: project name

text: fungus metagenome

text: Illumina 16S Miseq W. anomalus 16S metagenome


Wickerhamomyces anomalus WaM9.11

characteristic: External Id

text: A

characteristic: INSDC center name

text: public

text: Wickerhamomyces anomalus WaM9.11

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaL1.34

text: A

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Wickerhamomyces anomalus WaL1.34

text: Analysis of 16S Miseq in yeast isolated from Anopheles gambiae mosquito

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaF2.7

text: A

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Wickerhamomyces anomalus WaF2.7

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaF2.9

text: A

text: public

text: Wickerhamomyces anomalus WaF2.9

characteristic: Submitter Id

text: Analysis of 16S Miseq in yeast isolated from Aedes albopictus mosquito

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaM2.6

text: A

text: public

text: Wickerhamomyces anomalus WaM2.6

characteristic: description

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaF2.1

text: A

text: public

text: Wickerhamomyces anomalus WaF2.1

text: Analysis of 16S Miseq in yeast isolated from Aedes aegypti mosquito

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaM2.12

text: A

text: public

text: Wickerhamomyces anomalus WaM2.12

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus CAB1693 cl.1

text: A

text: public

text: Wickerhamomyces anomalus CAB1693 cl.1

text: Analysis of 16S Miseq in yeast isolated from Culex pipiens mosquito

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus CAB1693 cl.2

text: A

text: public

text: Wickerhamomyces anomalus CAB1693 cl.2

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaATCC

text: A

text: public

text: Wickerhamomyces anomalus WaATCC

text: Analysis of 16S Miseq in yeast isolated from Environment

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaUM3

text: A

text: public

text: Wickerhamomyces anomalus WaUM3

text: Analysis of 16S Miseq in yeast isolated from environment sample

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaBCU24

text: A

text: public

text: Wickerhamomyces anomalus WaBCU24

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus WaAS1

text: A

text: public

text: Wickerhamomyces anomalus WaAS1

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus Cp-cl.1

text: A

text: public

text: Wickerhamomyces anomalus Cp-cl.1

text: Analysis of 16S Miseq in yeast isolated from clinical sample

text: fungus metagenome

text: fungus metagenome


Wickerhamomyces anomalus Cp-cl.2

text: A

text: public

text: Wickerhamomyces anomalus Cp-cl.2

text: fungus metagenome

text: fungus metagenome


Candida parapsilosis

text: A

text: public

text: Candida parapsilosis

text: fungus metagenome

text: fungus metagenome


Meyerozyma guilliermondii

text: A

text: public

text: Meyerozyma guilliermondii

text: fungus metagenome

text: fungus metagenome


Rhodotorula mucilaginosa

text: A

text: public

text: Rhodotorula mucilaginosa

text: Analysis of 16S Miseq in yeast isolated from mosquito larval water

text: fungus metagenome

text: fungus metagenome


text: public

tag: Namespace:1. Institut Pasteur, Universite Paris Cite, Plate-forme Technologique Biomics, F-75015 Paris, France 2. Institut Pasteur, Universite Paris Cite, Bioinformatics and Biostatistics Hub, F-75015 Paris, France

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast cell

text: house mouse

text: Protocols: Embryonic fibroblasts cell lines were infected with ZIKV virus (MOI=5). Total cellular RNA was extracted at 16, 24 and 32 hours post-infection. Mock-infected cells were analyzed 24 hours after mock-infection and used as controls. Three biological replicates (cell lines derived from different embryos) were analyzed for each mouse strain. Cells were lysed in 350 μL RLT buffer (Qiagen) supplemented with 1% β-mercaptoethanol. Total RNA extraction was performed with the RNeasy Mini Kit (Qiagen) according to the manufacturer‟s instructions. On-column digestion with DNase I (Qiagen) was performed to avoid genomic DNA contamination. MEF RNA integrity and quantification were assessed using the RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system (Agilent Technologies, CA, USA). One microgram of high-quality RNA samples (RIN > 9.2) representing biological triplicates were submitted to Novogene for RNA-sequencing (Novogene Beijing, China). Poly-A selected RNA was used for paired-end library preparation and transcriptome sequencing. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA)

text: embryo

characteristic: developmental stage

text: normal

text: wild type genotype

characteristic: genotype

characteristic: infect

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: 1. Institut Pasteur, Universite Paris Cite, Plate-forme Technologique Biomics, F-75015 Paris, France 2. Institut Pasteur, Universite Paris Cite, Bioinformatics and Biostatistics Hub, F-75015 Paris, France

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: common name

text: embryo

text: normal

characteristic: disease

text: wild type genotype

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo

text: normal

text: wild type genotype

text: Zika virus

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Dept Biology and Biotecnologies

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Dept Biology and Biotecnologies

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: K562 were collected 48 hrs after CS2 treatment Direct-zol RNA kit (Zyno research) Truseq mRNA library (Illumina)

characteristic: description

text: adult

text: chronic myelogenous leukemia

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF INNSBRUCK

text: public

tag: Namespace:UNIVERSITY OF INNSBRUCK

text: Digestate, Day 65, Temperature: 37 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 65, Temperature: 43 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 65, Temperature: 47 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 65, Temperature: 53 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 70, Temperature: 37 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 70, Temperature: 43 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 70, Temperature: 47 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 70, Temperature: 53 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 72, Temperature: 37 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 72, Temperature: 43 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 72, Temperature: 47 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: UNIVERSITY OF INNSBRUCK

text: public

text: Digestate, Day 72, Temperature: 53 �C

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: YAMAT-seq of Blepharisma stoltei tRNAs

text: Blepharisma stoltei

text: Blepharisma stoltei

characteristic: strain

text: Blepharisma stoltei ATCC30299 YAMAT-seq


text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: YAMAT-seq of Loxodes magnus tRNAs

text: Loxodes magnus

text: Loxodes magnus

text: Loxodes magnus LM5 YAMAT-seq


text: public

text: Blepharisma stoltei mitochondrial genome

text: Blepharisma stoltei

text: Blepharisma stoltei

text: Blepharisma stoltei ATCC30299 mitochondrial genome


text: public

text: Blepharisma stoltei HT-IV MAC genome

text: Blepharisma stoltei

text: Blepharisma stoltei

text: HT-IV

text: Blepharisma stoltei HT-IV MAC genome


text: public

text: Blepharisma japonicum MAC genome

text: Blepharisma japonicum

text: Blepharisma japonicum

text: Blepharisma japonicum R1072 MAC genome


text: public

text: Blepharisma undulans MAC genome

text: Blepharisma undulans

text: Blepharisma undulans

text: Blepharisma undulans K78 MAC genome


E-MTAB-12794:Sample 1

text: IMPERIAL COLLEGE LONDON

text: public

text: E-MTAB-12794:Sample 1

tag: Namespace:IMPERIAL COLLEGE LONDON

text: ArrayExpress

text: Protocols: Bacterial cultures were grown in 3 mM NH4Cl Gutnick media to N- and N-24 and two biological replicates were collected at these two time-points for MG1655 WT and MG1655 hfq knockout. Cultures were mixed with 1:19 phenol:ethanol solution at a ratio of 9:1 culture:solution and then pelleted. Total RNA was isolated from the cell pellets using the RNAsnap protocol developed by Stead et al.(2012). The ribodepleted RNA samples were first fragmented using ultrasound (4 pulses of 30 s each at 4Â°C). Then, an oligonucleotide adapter was ligated to the 3' end of the RNA molecules. First-strand cDNA synthesis was performed using M-MLV reverse transcriptase and the 3' adapter as primer. The first strand cDNA was purified and the 5' Illumina TruSeq sequencing adapter was ligated to the 3' end of the antisense cDNA. The resulting cDNA was PCR-amplified to about 10-20 ng/ul using a high fidelity DNA polymerase. The cDNA was purified using the Agencourt AMPure XP kit (Beckman Coulter Genomics).

text: nitrogen starvation

characteristic: environmental stress

text: hfq mutant

characteristic: genotype

text: not applicable

characteristic: isolate

text: Escherichia coli str. K-12 substr. MG1655

text: whole organism

text: Sample 1


E-MTAB-12794:Sample 2

characteristic: ENA-LAST-UPDATE

text: IMPERIAL COLLEGE LONDON

text: public

text: E-MTAB-12794:Sample 2

text: ArrayExpress

text: nitrogen starvation

text: hfq mutant

text: not applicable

characteristic: organism

text: whole organism

text: Sample 2

characteristic: title


E-MTAB-12794:Sample 3

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12794:Sample 3

text: ArrayExpress

text: nitrogen starvation

text: hfq mutant

text: not applicable

text: whole organism

text: Sample 3


E-MTAB-12794:Sample 4

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12794:Sample 4

text: ArrayExpress

text: nitrogen starvation

text: hfq mutant

text: not applicable

text: whole organism

text: Sample 4


E-MTAB-12794:Sample 5

text: IMPERIAL COLLEGE LONDON

text: public

text: E-MTAB-12794:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: nitrogen starvation

text: wild type genotype

text: not applicable

text: whole organism

text: Sample 5


E-MTAB-12794:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

text: public

text: E-MTAB-12794:Sample 6

text: ArrayExpress

text: nitrogen starvation

text: wild type genotype

text: not applicable

text: whole organism

characteristic: organism part

text: Sample 6


E-MTAB-12794:Sample 7

text: IMPERIAL COLLEGE LONDON

text: public

text: E-MTAB-12794:Sample 7

text: ArrayExpress

text: nitrogen starvation

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: not applicable

text: whole organism

text: Sample 7


E-MTAB-12794:Sample 8

characteristic: ENA-LAST-UPDATE

text: IMPERIAL COLLEGE LONDON

text: public

text: E-MTAB-12794:Sample 8

text: ArrayExpress

text: nitrogen starvation

text: wild type genotype

text: not applicable

characteristic: isolate

text: whole organism

text: Sample 8


text: National Institute of Biology

text: public

tag: Namespace:National Institute of Biology

text: aquatic biome

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

text: seawater sample

text: coastal sea water

characteristic: environmental medium

text: Slovenia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: marine biome

characteristic: local environmental context

text: uncultured marine microorganism

characteristic: organism

text: Coastal Sea Research (No. P1-0237 ), founded by Slovenian Research Agency (ARRS)

characteristic: project name

text: uncultured marine microorganism

text: Illumina MiSeq

characteristic: sequencing method

text: V4-V5 on 16S rRNA

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Hungarian University of Sport Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Hungarian University of Sport Science

characteristic: Submitter Id

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 1


characteristic: ENA-LAST-UPDATE

text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 2


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 3


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 4


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 5


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 6


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 7


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 8


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 9


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 10


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 11


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 12


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 14


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 15


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 16


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 17


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 18


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 19


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Voluntary Training Group 20


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 1


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 2


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 3


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 4


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 5


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 6


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 7


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 8


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 9


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 10


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 11


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 12


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 13


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 14


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 15


text: Hungarian University of Sport Science

text: public

text: gut metagenome

text: gut metagenome

text: Untrained Control Group 16


text: public

tag: Namespace:Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: A balloon catheter was placed in the vena jugularis interna under local anesthesia and the correct position was controlled using sonography and x-ray. The catheter was moved forward and placed in the liver vein. A liver biopsy (19-G Tru-cut) was taken with a needle punctures. The whole procedure was done under sterile conditions by experienced specialists. In all subjects, histological assessment was performed on a second liver tissue sample. The liver biopsy sample was stored at -80 ◦C and transported with the use of dry ice to ensure optimal stability of the tissue samples. Healthy controls consumed a standardized liquid meal between 6PM and 10PM the night before the study day, consisting of two Nutridrink Standard (Nutricia, 200 ml) containing 300 kcal (16% protein, 49% carbohydrates and 35% fat) each. All participants met fasting at 8AM (fasting since 10PM). Participants randomised to receiving a standardized meal (postprandial) drank a standardized fluid meal, Nutridrink (Nutridrink Standard, 200 mL, 300 kcal, Nutricia) over 5 minutes 60 minutes prior to the liver biopsy. Participants randomised to fasting stayed fasting. Raw sequencing data were processed using bcl2fastq software version 2.20.0 (Illumina). Total DNA/RNA was purified by an AllPrep DNA/RNA Minikit (cat 80204 - QIAgen) according to manufacturer’s instructions and qualified using a 2100 Bioanalyzer instrument (Agilent Genomics). The extracted DNA/RNA were DNase treated with RNeasy Minikit (cat 74106 - QIAgen) and Rnase Free DNase set (cat 79254 - QIAgen) according to manufacturer’s protocol. All the above-mentioned processes was performed on a QiaCube machine. Library preparation was done using TruSeq Stranded Total RNA Library Prep Gold (cat 20020599 - Illumina) and IDT for Illumina-TruSeq RNA UD Indexes (cat 20022371 - Illumina) according to the manufacturer’s instructions. Some samples were prepared with NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (cat NEB-E7760S - New England Biolabs), NEBNext rRNA Depletion Kit 24 with beads (cat NEB-E7765 - New England Biolabs), and NEBNext Multiplex Oligos for Illumina (cat E7600S - New England Biolabs).

characteristic: description

text: cirrhosis of liver

characteristic: disease

text: theganf

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen

text: public

text: ArrayExpress

text: human

text: cirrhosis of liver

text: itwinyf

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: cirrhosis of liver

text: tewihem

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: cirrhosis of liver

text: wndcegm

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


text: public

text: ArrayExpress

text: human

characteristic: description

text: cirrhosis of liver

characteristic: disease

text: wenuof

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: cirrhosis of liver

text: latelnf

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: cirrhosis of liver

text: lfofobf

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: cirrhosis of liver

text: izemiam

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: cirrhosis of liver

characteristic: disease

text: dmananm

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: cirrhosis of liver

text: anichem

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: excluded

text: antofrm

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: excluded

text: thttecm

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: non-alcoholic fatty liver disease

characteristic: disease

text: mayoicf

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: non-alcoholic fatty liver disease

text: proussm

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: non-alcoholic fatty liver disease

text: sbysddf

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: non-alcoholic fatty liver disease

text: ckatiam

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: sex


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: non-alcoholic fatty liver disease

characteristic: disease

text: rthragf

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: non-alcoholic fatty liver disease

text: timacef

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: non-alcoholic fatty liver disease

text: cestwam

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: non-alcoholic fatty liver disease

text: torlymm

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: non-alcoholic fatty liver disease

characteristic: disease

text: enevesf

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: normal

text: ongwsef

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: normal

text: llacolm

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: normal

text: recthwm

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: treeseom

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: normal

text: breninf

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: normal

text: stanthm

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: normal

text: verintm

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: cailonf

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: normal

text: irrynsf

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: normal

text: itblanf

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: Wageningen University & Research

text: public

characteristic: SRA accession

tag: Namespace:Wageningen University & Research

characteristic: Submitter Id

characteristic: collection date

text: male plant from accession CGN25259

characteristic: genotype

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Spinacia turkestanica

text: spinacia

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: male

characteristic: plant sex

characteristic: plant structure

characteristic: ploidy

text: Spinacia turkestanica

text: s.turkestanica CGN25259 seedling

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Wageningen University & Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: male plant from accession CGN25471

characteristic: description

text: Netherlands

text: Spinacia tetrandra

characteristic: organism

text: spinacia

text: soil

text: male

text: Spinacia tetrandra

text: s.tetrandra CGN25471 seedling


characteristic: ENA-LAST-UPDATE

text: KAUST, CDA, Simon Krattinger's group

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-31-03-2023-14:30:37:552-3841

tag: Namespace:KAUST, CDA, Simon Krattinger's group

characteristic: Submitter Id

text: Triticum monococcum

characteristic: sample alias

text: Triticum monococcum


text: KAUST, CDA, Simon Krattinger's group

text: public

text: ena-SAMPLE-TAB-31-03-2023-14:30:37:552-3842

text: Triticum monococcum

text: Triticum monococcum


text: KAUST, CDA, Simon Krattinger's group

text: public

text: ena-SAMPLE-TAB-31-03-2023-14:30:37:552-3843

text: Triticum monococcum

text: Triticum monococcum

text: TA299-M1-CenH3_DNA_input_control_replicate1


text: KAUST, CDA, Simon Krattinger's group

text: public

text: ena-SAMPLE-TAB-31-03-2023-14:30:37:552-3844

text: Triticum monococcum

text: Triticum monococcum

text: TA299-M2-CenH3_DNA_input_control_replicate2


text: Julien Thouin

text: public

tag: Namespace:Julien Thouin

text: Arabidopsis Gnotopot SynCom reconstitution experiment

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S amplicon sequencing

text: Jify soil

characteristic: environmental medium

text: Yes

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arabidopsis Col-0

characteristic: local environmental context

text: plant metagenome

characteristic: pcr primers

text: plant metagenome

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: VISAVET Health Surveillance Centre UCM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:VISAVET Health Surveillance Centre UCM

text: M. haemolytica M280

text: Spain

text: Healthy

characteristic: host health state

text: Ovis aries

characteristic: host scientific name

characteristic: isolate

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: VISAVET Health Surveillance Centre UCM

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: M. haemolytica M242

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Healthy

text: Ovis aries

text: Ovine

text: Mannheimia haemolytica

characteristic: organism

text: Mannheimia haemolytica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: VISAVET Health Surveillance Centre UCM

text: public

text: M. haemolytica M411

text: Spain

text: Healthy

text: Ovis aries

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica


text: VISAVET Health Surveillance Centre UCM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: M. haemolytica M273

text: Spain

text: Healthy

text: Ovis aries

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica


text: VISAVET Health Surveillance Centre UCM

text: public

characteristic: INSDC status

text: M. haemolytica M239

text: Spain

text: Healthy

characteristic: host health state

text: Ovis aries

characteristic: host scientific name

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica


text: VISAVET Health Surveillance Centre UCM

text: public

text: M. haemolytica M214

text: Spain

text: Healthy

text: Ovis aries

characteristic: isolate

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: VISAVET Health Surveillance Centre UCM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: M. haemolytica M229

text: Spain

text: Healthy

text: Ovis aries

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica


text: VISAVET Health Surveillance Centre UCM

text: public

characteristic: collection date

text: M. haemolytica M270

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Healthy

text: Ovis aries

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VISAVET Health Surveillance Centre UCM

text: public

text: M. haemolytica M469

text: Spain

text: Healthy

text: Ovis aries

text: Ovine

text: Mannheimia haemolytica

characteristic: organism

text: Mannheimia haemolytica


characteristic: External Id

text: VISAVET Health Surveillance Centre UCM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: M. haemolytica M487

text: Spain

text: Healthy

text: Ovis aries

text: Ovine

text: Mannheimia haemolytica

text: Mannheimia haemolytica


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institut d'Investigacio Illes Balears (IdISBa)

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Cells were collected using 0.25% Trypsin-EDTA 1x (Gibco) Cells were cultured using RPMI 1640 media complemented with 10% FBS and penicillin/streptomycin at 5% CO2 37ºC. Cells were transiently transfected with either empty pSpCas9 or pSpCas9 containing a sgRNA sequence against insulator element 8. Transfection was performed using Lipofectamine3000 following manufacturer’s guidelines. Cells were then sorted using FACSAria Fusion using GFP+ as a reporter. The established models were then subcultured to perform high throughput experiments. DNA was extracted following the manufacturer's protocol from Dovetail Genomics, now Cantata Bio. Library prep was done using the NEBNext Ultra II DNA Library Prep kit for Illumina.

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: CRISPR/Cas9 mediated IE8 doublestrand break

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: Institut d'Investigacio Illes Balears (IdISBa)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: triple-negative breast cancer

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: triple-negative breast cancer

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: Homo sapiens


characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Wageningen University and Research

text: temperate biome

characteristic: broad-scale environmental context

characteristic: collection date

text: pig

text: Jejunum RNAseq of Pig15, day 3 after weaning, sample group CON

text: tissue

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: jejunum

characteristic: local environmental context

text: Sus scrofa

characteristic: project name

text: Sus scrofa


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of Traslational Research. Azienda USL-IRCCS di Reggio Emilia

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: natural killer cell

text: human

characteristic: common name

text: Protocols: After 24h drug treatment, cells were centrifuged at 350 g for 5 minutes. Cell pellet was resuspended in RLT buffer (Qiagen). NK-92 cells were cultured according to manufacturer's instruction (ATCC) in MEM-alpha medium additioned with FBS 12.5%, Horse serum 12.5%, Pen/Strep 1%, Glutamine 1%, Sodium Bicarbonate 1.5 g/L, 2-mercaptoethanol 0.1 mM, folic acid 0.02 mM, myo-inositol 0.02 mM, IL2 10 ng/ml. Cells were treated for 24h with 1uM OTX-015 (Birabresib, MedChem Express) previously dissolved in DMSO and further diluted in complete medium. DMSO alone was used as treatment control (vehicle). Total RNA was extracted by RNeasy Mini Kit (Qiagen) followed by on-column DNAse treatment. Libraries were obtained starting from 500 ng of total RNA following the TruSeq Stranded Total RNA preparation protocol (Illumina).

text: adult

characteristic: developmental stage

text: non-Hodgkins lymphoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

characteristic: title


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Laboratory of Traslational Research. Azienda USL-IRCCS di Reggio Emilia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: natural killer cell

text: human

characteristic: description

text: adult

text: non-Hodgkins lymphoma

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: IVIA, EEZ-CSIC and EELM-CSIC

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IVIA, EEZ-CSIC and EELM-CSIC

characteristic: Submitter Id

characteristic: collection date

text: Root of salt sensitive Citrus reshni × Citrus trifoliata hybrid (90) under control conditions

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenhouse, control conditions

characteristic: isolation and growth condition

text: Citrus reticulata x Citrus trifoliata

text: Citrandarin

characteristic: organism common name

text: 20-month-old nucellar seedling

characteristic: plant developmental stage

text: Vermiculite

characteristic: plant growth medium

characteristic: plant structure

text: Pots of 4 L

characteristic: rooting conditions

text: Citrus reticulata x Citrus trifoliata

text: Citrus reshni × Citrus trifoliata

characteristic: subspecific genetic lineage rank

text: Root of salt sensitive 90 under control conditions

text: 200 ml three times a week

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IVIA, EEZ-CSIC and EELM-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Root of salt sensitive Citrus reshni × Citrus trifoliata hybrid (90) under 15 mM NaCl

characteristic: description

text: Spain

text: Greenhouse, 15 mM NaCl

text: Citrus reticulata x Citrus trifoliata

characteristic: organism

text: Citrandarin

text: 20-month-old nucellar seedling

text: Vermiculite

text: Pots of 4 L

text: Citrus reticulata x Citrus trifoliata

text: Citrus reshni × Citrus trifoliata

text: Root of salt sensitive 90 under salinity treatment (15 mM NaCl)

characteristic: title

text: 200 ml three times a week


characteristic: ENA-LAST-UPDATE

text: IVIA, EEZ-CSIC and EELM-CSIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Root of salt tolerant Citrus reshni × Citrus trifoliata hybrid (107) under control conditions

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenhouse, control conditions

characteristic: isolation and growth condition

text: Citrus reticulata x Citrus trifoliata

text: Citrandarin

text: 20-month-old nucellar seedling

text: Vermiculite

text: Pots of 4 L

text: Citrus reticulata x Citrus trifoliata

text: Citrus reshni × Citrus trifoliata

text: Root of salt tolerant 107 under control conditions

text: 200 ml three times a week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IVIA, EEZ-CSIC and EELM-CSIC

text: public

text: Root of salt tolerant Citrus reshni × Citrus trifoliata hybrid (107) under 15 mM NaCl

text: Spain

text: Greenhouse, 15 mM NaCl

text: Citrus reticulata x Citrus trifoliata

text: Citrandarin

characteristic: organism common name

text: 20-month-old nucellar seedling

characteristic: plant developmental stage

text: Vermiculite

characteristic: plant growth medium

characteristic: plant structure

text: Pots of 4 L

characteristic: rooting conditions

text: Citrus reticulata x Citrus trifoliata

text: Citrus reshni × Citrus trifoliata

characteristic: subspecific genetic lineage rank

text: Root of salt tolerant 107 under salinity treatment (15 mM NaCl)

text: 200 ml three times a week

characteristic: watering regimen


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Julien Thouin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Validation Primers MoBacTag

characteristic: broad-scale environmental context

text: 16S amplicon sequencing

characteristic: description

text: eDNA

characteristic: environmental medium

text: Yes

text: Germany

text: Arabidopsis Col-0

characteristic: local environmental context

text: plant metagenome

characteristic: organism

characteristic: pcr primers

text: plant metagenome

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Julien Thouin

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Validation Primers MoBacTag

characteristic: collection date

text: plantITS amplicon sequencing

text: eDNA

text: Yes

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arabidopsis Col-0

text: plant metagenome

text: plant metagenome

text: plantITS

text: ITS


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Julien Thouin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Validation Primers MoBacTag

characteristic: broad-scale environmental context

text: fungal ITS amplicon sequencing

text: eDNA

text: Yes

text: Germany

text: Arabidopsis Col-0

text: plant metagenome

text: plant metagenome

text: ITS

text: ITS


text: Julien Thouin

text: public

text: Validation Primers MoBacTag

text: MoBacTag amplicon sequencing

characteristic: description

text: eDNA

characteristic: environmental medium

text: Yes

text: Germany

text: Arabidopsis Col-0

characteristic: local environmental context

text: plant metagenome

characteristic: organism

characteristic: pcr primers

text: plant metagenome

text: MoBacTag

characteristic: target gene

text: MoBacTag

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Julien Thouin

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: plantITS amplicon sequencing

text: Jify soil

text: Yes

text: Germany

characteristic: geographic location (country and/or sea)

text: Arabidopsis Col-0 Roots

text: plant metagenome

text: plant metagenome

text: plantITS

text: ITS

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Cornell University

text: maize

characteristic: common name

characteristic: cultivar

text: Maize seeds from lot WISN17/42781 (de Leon)

text: USA

text: Zea mays subsp. mays

text: stem

characteristic: organism part

text: Zea mays subsp. mays


text: Cornell University

text: public

characteristic: INSDC status

text: maize

text: MoG

text: Maize seeds from lot WISN17/42822 (de Leon)

characteristic: description

text: USA

text: Zea mays subsp. mays

characteristic: organism

text: stem

text: Zea mays subsp. mays

text: MoG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cornell University

text: public

text: maize

text: Maize seeds from lot WISN15/22565 (de Leon)

text: USA

text: Zea mays subsp. mays

text: stem

text: Zea mays subsp. mays


text: Cornell University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: maize

text: Maize seeds from lot WISN17/42251 (de Leon)

text: USA

text: Zea mays subsp. mays

text: leaf

text: Zea mays subsp. mays


text: Cornell University

text: public

characteristic: collection date

text: maize

text: Maize seeds from lot WISN17/42637 (de Leon)

text: USA

characteristic: geographic location (country and/or sea)

text: Zea mays subsp. mays

text: leaf

text: Zea mays subsp. mays


characteristic: ENA-LAST-UPDATE

text: Cornell University

text: public

text: maize

text: Maize seeds from lot WISN17/43273 (de Leon)

text: USA

text: Zea mays subsp. mays

text: stem

text: Zea mays subsp. mays

characteristic: title


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: public

text: maize

text: Maize seedlings from Seth Murray (CS20-INC-090)

text: not applicable

text: USA

text: Zea mays subsp. mays

text: leaf

text: Zea mays subsp. mays


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: maize

text: Maize seedlings from Seth Murray (CS20-INC-093)

text: not applicable

text: USA

text: Zea mays subsp. mays

text: leaf

text: Zea mays subsp. mays


text: Cornell University

text: public

text: maize

characteristic: common name

characteristic: cultivar

text: Maize seeds from Liz Lee (2019)

text: not applicable

text: USA

text: Zea mays subsp. mays

text: leaf

text: Zea mays subsp. mays


text: Cornell University

text: public

characteristic: INSDC status

text: maize

text: Maize seeds from lot: WISN16/43020 (de Leon)

text: USA

text: Zea mays subsp. mays

text: stem

characteristic: organism part

text: Zea mays subsp. mays


text: Julien Thouin

text: public

text: Arabidopsis Gnotopot SynCom reconstitution experiment

characteristic: broad-scale environmental context

text: 16S amplicon sequencing

characteristic: description

text: Jify soil

characteristic: environmental medium

text: Yes

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arabidopsis Col-0 Roots

characteristic: local environmental context

text: plant metagenome

characteristic: organism

characteristic: pcr primers

text: plant metagenome

characteristic: target gene

characteristic: target subfragment


Honzas H. Inflata

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERISTY

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Honzas H. Inflata

tag: Namespace:UPPSALA UNIVERISTY

characteristic: Submitter Id

text: Wetland area, shallow water

characteristic: collection date

characteristic: depth

text: Sample from sediments in wetland in revnice, Czech Republic

characteristic: elevation

text: sediments

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: Wetland area in Revnice

text: Hexamita inflata

text: H inflata genome

characteristic: project name

text: Hexamita inflata

text: Czech H inflata 1

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Department of Biotechnology and Life Sciences (DBSV), University of Insubria

text: European seabass

characteristic: common name

text: feed

characteristic: description

text: Dicentrarchus labrax

characteristic: organism

text: Dicentrarchus labrax

text: Effect of functional feeds on sea bass gut microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Biotechnology and Life Sciences (DBSV), University of Insubria

text: public

text: European seabass

text: feed

text: Dicentrarchus labrax

text: Dicentrarchus labrax


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: European seabass

text: gut mucosa

text: Dicentrarchus labrax

text: Dicentrarchus labrax


text: public

tag: Namespace:German  Cancer  Research  Center  (DKFZ),  Division  of  Somatic  Evolution  and  Early Detection

characteristic: Submitter Id

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: To generate single cell suspensions, freshly isolated whole tissues of ovary, oviduct and tissue pieces from uterus were treated by enzymatic digestion. All tissues were initially incubated separately in 2 ml Eppendorf tubes containing 0,25% trypsin in PBS and digested for 30 min at 37°C with gentle rocking. A second digestion buffer containing 25 mg/ml Collagenase I, 25 mg/ml Collagenase II, 50mg/ml Collagenase IV, and 25 mg/ml Dispase II in PBS was added, and tissues further dissociated for 2.5 hours at 37 °C with gentle rocking. Enzymatic digestion was quenched by addition of 10% FCS in PBS on ice. The cell suspensions were passaged through a 40µm cell strainer (Greiner Bio One) to remove cell debris and buffer residue. Cell suspensions were gently centrifuged at 350g for 7 min at 4°C. Cells were resuspended in PBS containing 0,04% FCS, 2 mM EDTA and propidium iodide (PI) was added to final concentration of 1 µg/ml prior to FACS sorting. 10x 3'-scRNA-seq ver. 3.1 (10X Genomics® User guide Rev.C and D) 10x 3'-scRNA-seq ver. 3.1 (10X Genomics® User guide Rev.C and D)

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: ovary

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

text: German  Cancer  Research  Center  (DKFZ),  Division  of  Somatic  Evolution  and  Early Detection

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: oviduct

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: uterus

text: Mus musculus

text: female


text: public

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: ovary

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:INSTITUTE OF MICROBIOLOGY, ETH ZURICH

text: estuarine biome [ENVO:01000020]

characteristic: broad-scale environmental context

characteristic: collection date

text: Algal mat metagenome

characteristic: common name

text: Metagenome from fresh algal mat at site CP

characteristic: description

text: algal material [ENVO:01001189]

characteristic: environmental medium

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: brackish lake [ENVO:00000540]

characteristic: local environmental context

text: algae metagenome

characteristic: organism

text: algae metagenome

text: Chandrapur fresh algal mat

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: estuarine biome [ENVO:01000020]

text: Algal mat metagenome

text: Metagenome from degrading algal mat at site CP

text: algal material [ENVO:01001189]

text: India

text: brackish lake [ENVO:00000540]

text: algae metagenome

text: algae metagenome

text: Chandrapur degrading algal mat


characteristic: ENA-CHECKLIST

text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: estuarine biome [ENVO:01000020]

characteristic: broad-scale environmental context

text: Sediment metagenome

text: Metagenome from sediment at site CP

text: lake sediment [ENVO:00000546]

text: India

text: brackish lake [ENVO:00000540]

text: sediment metagenome

text: sediment metagenome

text: Chandrapur sediment


text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

text: public

text: estuarine biome [ENVO:01000020]

characteristic: collection date

text: Algal mat metagenome

characteristic: common name

text: Metagenome from fresh algal mat at site OP

characteristic: description

text: algal material [ENVO:01001189]

characteristic: environmental medium

text: India

characteristic: geographic location (country and/or sea)

text: brackish lake [ENVO:00000540]

text: algae metagenome

text: algae metagenome

text: Odialpur fresh algal mat


text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

text: public

text: estuarine biome [ENVO:01000020]

text: Algal mat metagenome

text: Metagenome from degrading algal mat at site OP

text: algal material [ENVO:01001189]

text: India

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: brackish lake [ENVO:00000540]

characteristic: local environmental context

text: algae metagenome

characteristic: organism

text: algae metagenome

text: Odialpur degrading algal mat

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: estuarine biome [ENVO:01000020]

text: Sediment metagenome

text: Metagenome from sediment at site OP

text: lake sediment [ENVO:00000546]

text: India

text: brackish lake [ENVO:00000540]

text: sediment metagenome

text: sediment metagenome

text: Odialpur sediment


characteristic: ENA-CHECKLIST

text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: estuarine biome [ENVO:01000020]

text: Algal mat metagenome

text: Metagenome from fresh algal mat at site MkP

text: algal material [ENVO:01001189]

text: India

text: brackish lake [ENVO:00000540]

text: algae metagenome

text: algae metagenome

text: Malatikuda purple fresh algal mat


text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

text: public

text: estuarine biome [ENVO:01000020]

characteristic: broad-scale environmental context

characteristic: collection date

text: Algal mat metagenome

characteristic: common name

text: Metagenome from degrading algal mat at site MkP

characteristic: description

text: algal material [ENVO:01001189]

characteristic: environmental medium

text: India

text: brackish lake [ENVO:00000540]

text: algae metagenome

text: algae metagenome

text: Malatikuda purple degrading algal mat


text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

text: public

text: estuarine biome [ENVO:01000020]

text: Algal mat metagenome

text: Metagenome from fresh algal mat at site MkB

text: algal material [ENVO:01001189]

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: brackish lake [ENVO:00000540]

characteristic: local environmental context

text: algae metagenome

characteristic: organism

text: algae metagenome

text: Malatikuda black fresh algal mat


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: INSDC center name

text: public

text: estuarine biome [ENVO:01000020]

text: Algal mat metagenome

text: Metagenome from degrading algal mat at site MkB

text: algal material [ENVO:01001189]

text: India

text: brackish lake [ENVO:00000540]

text: algae metagenome

text: algae metagenome

text: Malatikuda black degrading algal mat

characteristic: title


characteristic: ENA-CHECKLIST

text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: estuarine biome [ENVO:01000020]

text: Sediment metagenome

text: Metagenome from sediment at site MK

text: lake sediment [ENVO:00000546]

text: India

text: brackish lake [ENVO:00000540]

text: sediment metagenome

text: sediment metagenome

text: Malatikuda sediment


text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

text: public

characteristic: Submitter Id

text: estuarine biome [ENVO:01000020]

characteristic: broad-scale environmental context

characteristic: collection date

text: Algal mat metagenome

characteristic: common name

text: Metagenome from degrading algal mat at site HI

characteristic: description

text: algal material [ENVO:01001189]

text: India

text: brackish lake [ENVO:00000540]

text: algae metagenome

text: algae metagenome

text: Honeymoon island degrading algal mat


text: FISABIO- Public Health Research

text: public

tag: Namespace:FISABIO- Public Health Research

text: fermentation metagenome

text: fermentation_fresh almond bagasse

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: metagenome

characteristic: investigation type

text: fermentation metagenome

characteristic: project name

text: fermentation metagenome

text: Illumina

characteristic: sequencing method

text: Amplicon (V3-V4) of 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO- Public Health Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: fermentation metagenome

text: fermentation_feces control

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-associated

text: metagenome

text: fermentation metagenome

characteristic: organism

text: fermentation metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene

characteristic: title


text: FISABIO- Public Health Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: fermentation metagenome

characteristic: common name

text: fermentation_almond bagasse_freeze-dried

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

text: human-associated

text: metagenome

text: fermentation metagenome

text: fermentation metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: FISABIO- Public Health Research

text: public

text: fermentation metagenome

text: fermentation_almond bagasse_60C.air-dried

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: metagenome

characteristic: investigation type

text: fermentation metagenome

characteristic: project name

text: fermentation metagenome

text: Illumina

characteristic: sequencing method

text: Amplicon (V3-V4) of 16S rRNA gene


characteristic: External Id

text: FISABIO- Public Health Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: fermentation metagenome

text: fermentation_almond bagasse_70C.air-dried

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-associated

text: metagenome

text: fermentation metagenome

characteristic: organism

text: fermentation metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: BN_WGS_EcdcId_1A0835A7-FD85-5EBE-8D23-AF2401EBA08B

tag: Namespace:European Centre for Disease Prevention and Control

characteristic: collection date

characteristic: common name

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: not provided

text: Escherichia coli

text: Escherichia coli

text: European study of Escherichia coli carrying blaNDM-5 based on national whole genome sequencing data from 13 European Union / European Economic Area countries, 2012-2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European Centre for Disease Prevention and Control

text: public

text: BN_WGS_EcdcId_4232A2E8-2E64-5D09-9EAF-CFBB8E0207B3

text: France

text: not provided

text: Homo sapiens

text: not provided

text: Escherichia coli

text: Escherichia coli


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: DNA metagenome from subject 100001

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA metagenome from sample 100001


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut metagenome

characteristic: common name

text: DNA metagenome from subject 100003

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA metagenome from sample 100003

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: DNA metagenome from subject 100007

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA metagenome from sample 100007


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

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