characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Pravin Ganesanandamoorth, Federica Cariti, Alexander J. Devaux, Franziska Böni, Johannes Rusch, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: ZH

text: metagenome

characteristic: investigation type

text: Zürich (ZH)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020211216/2021


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:SIB - ETH ZURICH CBG

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

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characteristic: sewage type

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text: hCoV-19/Switzerland/ZH-ETHZ-1020211217/2021

characteristic: title


characteristic: ENA-CHECKLIST

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text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

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text: public

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text: ZH

text: metagenome

characteristic: investigation type

text: Zürich (ZH)

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characteristic: population size of the catchment area

text: wastewater metagenome

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text: hCoV-19/Switzerland/ZH-ETHZ-1020211218/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

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text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020211219/2021


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

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characteristic: name of the sampling site

text: wastewater metagenome

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text: hCoV-19/Switzerland/ZH-ETHZ-1020211220/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

characteristic: INSDC last update

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characteristic: INSDC status

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text: metagenome

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characteristic: surveillance target

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characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

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characteristic: SRA accession

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text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

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text: hCoV-19/Switzerland/ZH-ETHZ-1020211222/2021


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020211223/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

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characteristic: INSDC status

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text: ZH

text: metagenome

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characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/ZH-ETHZ-1020211224/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

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text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-1020211225/2021

characteristic: title


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Zürich (ZH)

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characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020211226/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020211227/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/ZH-ETHZ-1020211228/2021


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-1020211229/2021

characteristic: title


characteristic: ENA-CHECKLIST

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text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: ZH

text: metagenome

characteristic: investigation type

text: Zürich (ZH)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020211230/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020211231/2021


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Federica Cariti, Alexander J. Devaux, Franziska Böni, Johannes Rusch, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/ZH-ETHZ-1020220101/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-1020220102/2022

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: metagenome

characteristic: investigation type

text: Zürich (ZH)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020220103/2022


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020220104/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/ZH-ETHZ-1020220105/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-1020220106/2022

characteristic: title


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Zürich (ZH)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020220107/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB - ETH ZURICH CBG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020220108/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB - ETH ZURICH CBG

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/ZH-ETHZ-1020220109/2022


text: SIB - ETH ZURICH CBG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-1020220110/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Tree of Life Programme

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

characteristic: collected by

text: UNIVERSITY OF VIENNA

characteristic: collecting institution

unit: m

characteristic: depth

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

text: Cymodocea nodosa meadow next to a sailing club and public beach (high anthropogenic impact), muddy highly sulphidic sediment

characteristic: habitat

text: adult

characteristic: host life stage

text: Loripes orbiculatus

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: BENEDICT YUEN

characteristic: identified by

text: UNIVERSITY OF VIENNA

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

characteristic: original collection location

text: ASG

characteristic: project name

characteristic: sample derived from

text: mollusc metagenome

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: e349aec3-1f1e-4d62-868f-7011a35249b6-asg-metagenome

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

characteristic: collected by

text: UNIVERSITY OF VIENNA

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

text: adult

text: Loripes orbiculatus

text: not collected

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

characteristic: investigation type

text: Bivalve: Loripes orbiculatus

text: marine benthic biome

text: mollusc metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Sedimenticolaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

text: ASG

text: Sedimenticolaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT COLLECTED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: taxonomic classification defined by topology and ANI

text: 9f9d7339-0042-4cb7-a141-f72079882acd-asg-MAGScoT_cleanbin_000001


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: adult bivalve tissue

text: Austria

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: habitat

text: adult

characteristic: host life stage

text: Loripes orbiculatus

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: BENEDICT YUEN

characteristic: identified by

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

text: Bivalve: Loripes orbiculatus

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

text: Candidatus Thiodiazotropha sp.

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

characteristic: original collection location

text: ASG

characteristic: project name

characteristic: sample derived from

text: Candidatus Thiodiazotropha sp.

text: Pacbio Sequel II

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: ANI

text: 6c9c6ebe-ea17-4da4-b1e2-0be8f8d0f68c-asg-MAGScoT_cleanbin_000002


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

text: BENEDICT YUEN

characteristic: collected by

text: UNIVERSITY OF VIENNA

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

text: adult

text: Loripes orbiculatus

text: not collected

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

characteristic: investigation type

text: Bivalve: Loripes orbiculatus

text: marine benthic biome

text: mollusc metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Endozoicomonadaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

text: ASG

text: Endozoicomonadaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT COLLECTED

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 16bdaa04-9b06-4a59-819a-f28dee817e19-asg-MAGScoT_cleanbin_000003


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: adult bivalve tissue

text: Austria

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: habitat

text: adult

characteristic: host life stage

text: Loripes orbiculatus

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: BENEDICT YUEN

characteristic: identified by

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

text: Bivalve: Loripes orbiculatus

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

text: Rhodococcus qingshengii

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

characteristic: original collection location

text: ASG

characteristic: project name

characteristic: sample derived from

text: Rhodococcus qingshengii

text: Pacbio Sequel II

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: 2b7da9c3-c8f1-4de0-93cd-dae453023313-asg-MAGScoT_cleanbin_000004


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIPF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

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text: public

characteristic: INSDC status

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Strasbourg

text: public

characteristic: SRA accession

text: E-MTAB-13677:TENASCIN_3_MP5-2_BM1_10_R1_T1

tag: Namespace:University of Strasbourg

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: Protocols: Mice were sacrificed and mammary gland tumors collected and frozen. Eight-week-old female mice (FVB/NCrl, Charles River) were engrafted with 5 × 106 NT193 pool cells (diluted in 50 μl filter-sterilized PBS) in the surgically exposed left fourth mammary gland. After a period of 2 weeks (when the tumors were around 200 mm3), the mice received treatment with MP5 at a dosage of 1 mg/kg (in 50 μl PBS) or PBS control through peritumoral injections every second day for a total of 10 injections over 3 weeks. Total RNA was prepared from frozen tissues using TriReagent (Life Technologies) with a tissue homogenizer according to the manufacturer’s instructions. Sequencing libraries were prepared using the Smarter Stranded Total RNA-Seq kit v3 Pico Input Mammalian following the manufacturer’s instructions (Takara Bio, San Jose, CA, USA).

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: mammary gland

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: FVB/NCrl

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Strasbourg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13677:TENASCIN_3_MP5-3_BM1_10_R1_T1

text: ArrayExpress

text: not collected

text: house mouse

text: adult

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mammary gland

text: Mus musculus

text: female

text: FVB/NCrl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Strasbourg

text: public

characteristic: SRA accession

text: E-MTAB-13677:TENASCIN_3_MP5-4_BM1_10_R1_T1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: mammary gland

text: Mus musculus

text: female

text: FVB/NCrl


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Strasbourg

text: public

text: E-MTAB-13677:TENASCIN_3_MP5-5_BM1_10_R1_T1

text: ArrayExpress

text: not collected

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: mammary gland

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: FVB/NCrl

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Strasbourg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13677:TENASCIN_3_MP5-6_BM1_10_R1_T1

text: ArrayExpress

text: not collected

text: house mouse

text: adult

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mammary gland

text: Mus musculus

text: female

text: FVB/NCrl


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Strasbourg

text: public

characteristic: SRA accession

text: E-MTAB-13677:TENASCIN_3_PBS-1_BM1_10_R1_T1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: mammary gland

text: Mus musculus

text: female

text: FVB/NCrl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Strasbourg

text: public

text: E-MTAB-13677:TENASCIN_3_PBS-2_BM1_10_R1_T1

text: ArrayExpress

text: not collected

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: mammary gland

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: FVB/NCrl

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Strasbourg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13677:TENASCIN_3_PBS-3_BM1_10_R1_T1

text: ArrayExpress

text: not collected

text: house mouse

text: adult

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mammary gland

text: Mus musculus

text: female

text: FVB/NCrl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Strasbourg

text: public

characteristic: SRA accession

text: E-MTAB-13677:TENASCIN_3_PBS-4_BM1_10_N1_T1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: mammary gland

text: Mus musculus

text: female

text: FVB/NCrl


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Strasbourg

text: public

text: E-MTAB-13677:TENASCIN_3_PBS-5_BM1_10_R1_T1

text: ArrayExpress

text: not collected

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: mammary gland

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: FVB/NCrl

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oxford University Clinical Reseach Unit

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Oxford University Clinical Reseach Unit

text: not provided

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

text: Klebsiella pneumoniae

characteristic: isolate

text: blood

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Food Safety, Animal Health and Environment "BIOR"

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: MiSeq raw DNA reads

characteristic: description

text: Latvia

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: public

text: MiSeq raw DNA reads

text: Latvia

text: Enterococcus faecalis

text: Enterococcus faecalis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: MiSeq raw DNA reads

text: Latvia

text: Enterococcus durans

text: Enterococcus durans


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: MiSeq raw DNA reads

text: Latvia

text: Enterococcus hirae

text: Enterococcus hirae


E-MTAB-13686:CTL3.9 Nanopore Readset

text: University of Cambridge

text: public

characteristic: INSDC status

text: E-MTAB-13686:CTL3.9 Nanopore Readset

tag: Namespace:University of Cambridge

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: thale cress

characteristic: common name

characteristic: cultivar

text: Protocols: 3-week-old A. thaliana plants were grown on 1⁄2 MS media containing 1% sucrose. These were placed in the dark for 48 hours before harvesting by flash freezing in liquid nitrogen. Plants were grown in controlled environment chambers at 20°C under long day conditions (16/8 hours light/dark photoperiods) with 60% humidity and 150 µmol m-2 sec-1 light intensity. Samples were ground in liquid nitrogen, a nuclei extraction was preformed with a hexylene-glycol buffer. nuclei were lysed DNA using a CTAB buffer and cleaned up with a phenol/chloroform/isoamyl alcohol (PCI, 25:24:1) extraction. HMW DNA was precipitated using 3M Sodium Acetate and ethanol. Approximately 5 μg of DNA was size selected (>30 kb) using the BluePippin System (Sage Science) and the 0.75% agarose gel cassette. Size-selected DNA was prepared for sequencing using the ONT SQK-LSK109 ligation kit

text: seedling development stage

characteristic: developmental stage

text: CTL3.9 transgenes

characteristic: genetic modification

text: Col-0 CTL3.9

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana

text: CTL3.9 Nanopore Readset


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: External Id

text: University of Barcelona

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Barcelona

characteristic: Submitter Id

text: anaerobic sludge

characteristic: broad-scale environmental context

text: C_11A lab scale

text: Sludge

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: anaerobic lab scale bioreactor

characteristic: local environmental context

text: activated sludge metagenome

characteristic: project name

text: activated sludge metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Barcelona

characteristic: INSDC center name

text: public

text: anaerobic sludge

characteristic: collection date

text: C_11B lab scale

characteristic: description

text: Sludge

text: Spain

text: anaerobic lab scale bioreactor

text: activated sludge metagenome

text: activated sludge metagenome


characteristic: External Id

text: University of Barcelona

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: anaerobic sludge

text: T_11A lab scale

text: Sludge

text: Spain

text: anaerobic lab scale bioreactor

text: activated sludge metagenome

characteristic: organism

text: activated sludge metagenome


text: University of Barcelona

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: anaerobic sludge

characteristic: broad-scale environmental context

text: T_18A lab scale

text: Sludge

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

text: anaerobic lab scale bioreactor

text: activated sludge metagenome

text: activated sludge metagenome


text: University of Barcelona

text: public

text: anaerobic sludge

text: T_18B lab scale

text: Sludge

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: anaerobic lab scale bioreactor

characteristic: local environmental context

text: activated sludge metagenome

characteristic: project name

text: activated sludge metagenome

characteristic: title