characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 3 tube3

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: MOLLUSC FOOT

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 3 tube2

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Tree of Life Programme

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: GILL ANIMAL

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 3 tube1

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 4 tube6

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 4 tube5

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: GONAD

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 4 tube4

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: INTESTINE

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 4 tube3

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: MOLLUSC FOOT

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 4 tube2

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: GILL ANIMAL

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 4 tube1

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 5 tube6

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 5 tube5

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: GONAD

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 5 tube4

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: INTESTINE

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 5 tube3

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Donax trunculus

text: MOLLUSC FOOT

characteristic: organism part

characteristic: project name

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Dtrunculus 5 tube2

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: truncated wedgeshell

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Galicia | A Coruna | Corrubedo Beach

text: marine benthic

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

text: GILL ANIMAL

text: Donax trunculus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: GAL

text: SAG Dtrunculus 5 tube1

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SEILA DIAZ

text: Universidade de Aveiro

characteristic: collecting institution

characteristic: collection date

text: truncated wedgeshell

text: Spain

characteristic: geographic location (latitude)

text: Galicia | A Coruna | Corrubedo Beach

characteristic: geographic location (region and locality)

text: marine benthic

characteristic: habitat

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

text: Donax trunculus

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: sample derived from

text: Donax trunculus

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Sanger Institute

text: SAG Xsecuris 1

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEILA DIAZ

text: Universidade de Aveiro

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Galicia | Pontevedra | Ria Pontevedra

text: estuarine-freshwater

text: SEILA DIAZ

text: Universidade de Aveiro

text: adult

characteristic: lifestage

text: Xenostrobus securis

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Xenostrobus securis

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH INSTITUT

text: public

characteristic: SRA accession

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: Submitter Id

characteristic: collection date

text: isolate obtained from a human listeriosis case in Germany

characteristic: description

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:037-238928

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: metaSPAdes v.3.14.0, k-mers set 21,33,55,77,99,127, default parameters otherwise

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: binning software

text: In vitro culture derivated from samples from the gut of chinchilla (Chinchilla lanigera)

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to Bacteroides fragilis

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: The genomes here correspond to 24 metagenome-assembled genomes of the 30 bacteria identified that grow together with Monocercomonoides exilis in TYSGM-9 medium.

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Bacteroides fragilis

characteristic: organism

characteristic: sample derived from

text: Bacteroides fragilis

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: BACA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238929

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to Bacteroides thetaiotaomicron

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Bacteroides thetaiotaomicron

characteristic: project name

text: Bacteroides thetaiotaomicron

text: 16S gene

text: BACB

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238930

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to a Bacteroides sp.

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Bacteroides sp.

characteristic: organism

characteristic: sample derived from

text: Bacteroides sp.

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: BACC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238931

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to Bacteroides rodentium

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Bacteroides rodentium

characteristic: project name

text: Bacteroides rodentium

text: 16S gene

text: BACD

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238932

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to a Bilophila sp.

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Bilophila sp.

characteristic: organism

characteristic: sample derived from

text: Bilophila sp.

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: MEBIL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238933

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to Citrobacter freundii

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Citrobacter freundii

characteristic: project name

text: Citrobacter freundii

text: 16S gene

text: CITR

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238934

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to a Desulfovibrio sp.

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Desulfovibrio sp.

characteristic: organism

characteristic: sample derived from

text: Desulfovibrio sp.

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: DELT


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238935

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Desulfovibrio sp.

characteristic: project name

text: Desulfovibrio sp.

text: 16S gene

text: DESF

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:038-238936

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to Eggerthella lenta

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Eggerthella lenta

characteristic: organism

characteristic: sample derived from

text: Eggerthella lenta

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: MEEGG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238937

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to Enterocloster clostridioformis

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Enterocloster clostridioformis

characteristic: project name

text: Enterocloster clostridioformis

text: 16S gene

text: ENTA

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238938

text: metaSPAdes v.3.14.0, k-mers set 21,33,55,77,99,127, default parameters otherwise

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

text: In vitro culture derivated from samples from the gut of chinchilla (Chinchilla lanigera)

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to Enterocloster aldensis

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Enterocloster aldenensis

characteristic: organism

characteristic: sample derived from

text: Enterocloster aldenensis

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: ENTB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238939

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to a Eubacterium sp.

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: The genomes here correspond to 24 metagenome-assembled genomes of the 30 bacteria identified that grow together with Monocercomonoides exilis in TYSGM-9 medium.

text: TYSGM-9 medium

text: rodent metagenome

text: Eubacterium sp.

characteristic: project name

text: Eubacterium sp.

text: 16S gene

text: EUB

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238940

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to Fusobacterium varium

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Fusobacterium varium

characteristic: organism

characteristic: sample derived from

text: Fusobacterium varium

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: MEFUS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238941

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to Kerstersia gyiorum

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Kerstersia gyiorum

characteristic: project name

text: Kerstersia gyiorum

text: 16S gene

text: KER

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238942

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to a Morganella sp.

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Morganella sp. (in: enterobacteria)

characteristic: organism

characteristic: sample derived from

text: Morganella sp. (in: enterobacteria)

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: MORG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238943

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to a Parabacteroides sp.

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Parabacteroides sp.

characteristic: project name

text: Parabacteroides sp.

text: 16S gene

text: PARBA

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:040-238944

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to Parabacteroides distasonis

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Parabacteroides distasonis

characteristic: organism

characteristic: sample derived from

text: Parabacteroides distasonis

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: PARBB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:040-238945

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to Paraeggerthella hongkongensis

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Paraeggerthella hongkongensis

characteristic: project name

text: Paraeggerthella hongkongensis

text: 16S gene

text: PEGG

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:040-238946

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to Peptostreptococcus russellii

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Peptostreptococcus russellii

characteristic: organism

characteristic: sample derived from

text: Peptostreptococcus russellii

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: PEPC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:040-238947

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.14.0, k-mers set 21,33,55,77,99,127, default parameters otherwise

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

text: In vitro culture derivated from samples from the gut of chinchilla (Chinchilla lanigera)

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to a Petrimonas sp.

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Petrimonas sp.

characteristic: project name

text: Petrimonas sp.

text: 16S gene

text: PETM

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:040-238948

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to a Phascolarctobacterium sp.

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: The genomes here correspond to 24 metagenome-assembled genomes of the 30 bacteria identified that grow together with Monocercomonoides exilis in TYSGM-9 medium.

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Phascolarctobacterium sp.

characteristic: organism

characteristic: sample derived from

text: Phascolarctobacterium sp.

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: PHAS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:040-238949

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to a Providencia sp.

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Providencia sp.

characteristic: project name

text: Providencia sp.

text: 16S gene

text: MEPRV

characteristic: title


characteristic: ENA-CHECKLIST

text: BIOCEV

text: public

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:040-238950

text: coverage and kmer

text: MaxBin v2.2.7

characteristic: binning software

characteristic: broad-scale environmental context

characteristic: completeness score

text: MaxBin v2.2.7 marker set 107

characteristic: completeness software

characteristic: contamination score

text: MAG corresponding to a Saezia sp.

text: Incubated at 37ºC

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: TYSGM-9 medium

characteristic: local environmental context

text: rodent metagenome

characteristic: metagenomic source

text: Saezia sanguinis

characteristic: organism

characteristic: sample derived from

text: Saezia sanguinis

characteristic: sequencing method

text: 16S gene

characteristic: taxonomic identity marker

text: MESAZ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOCEV

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-01-2024-09:53:06:041-238951

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: MaxBin v2.2.7

characteristic: collection date

text: MaxBin v2.2.7 marker set 107

text: MAG corresponding to a Tissierella sp.

characteristic: description

text: Incubated at 37ºC

text: Czech Republic

text: metagenome-assembled genome

text: TYSGM-9 medium

text: rodent metagenome

text: Tissierella sp.

characteristic: project name

text: Tissierella sp.

text: 16S gene

text: TIS

characteristic: title


characteristic: ENA-CHECKLIST

text: ILRI

text: public

text: whole genome sequencing

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: field

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Dovyalis caffra

characteristic: organism

text: Kei apple

characteristic: organism common name

text: reproductive

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Leaf

characteristic: plant structure

text: seed

characteristic: propagation

text: healthy

characteristic: sample health state

text: Dovyalis caffra

text: ICRAF 04990

characteristic: source material identifiers


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: transcriptome sequencing

characteristic: description

text: Kenya

text: field

text: Dovyalis caffra

text: Kei apple

text: reproductive

text: soil

text: bark

text: seed

text: healthy

text: Dovyalis caffra

text: ICRAF 04990


characteristic: ENA-CHECKLIST

text: CDA

text: public

text: not applicable

characteristic: air temperature regimen

text: missing: not collected

characteristic: culture rooting medium

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Pearl millet

characteristic: growth facility

text: selfed

characteristic: isolation and growth condition

characteristic: light regimen

text: not applicable

characteristic: mineral nutrient regimen

characteristic: number of replicons

text: Cenchrus americanus

characteristic: organism

text: not applicable

characteristic: organism common name

text: healthy

characteristic: plant developmental stage

text: missing: not collected

text: seedling, vegetative and reproductive

text: not applicable

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: young leaf and seedling and inflorescence and root

text: missing: not collected

characteristic: rooting conditions

text: missing: not collected

characteristic: rooting medium carbon

text: missing: not collected

characteristic: rooting medium macronutrients

text: missing: not collected

characteristic: rooting medium micronutrients

text: missing: not collected

characteristic: rooting medium organic supplements

text: not applicable

characteristic: rooting medium pH

text: missing: not collected

characteristic: rooting medium regulators

text: missing: not collected

characteristic: rooting medium solidifier

text: growth chamber

characteristic: sample disease status

text: not applicable

characteristic: sample volume or weight for DNA extraction

text: Cenchrus americanus

text: soil

characteristic: soil pH

text: missing: not collected

characteristic: soil_taxonomic/FAO classification

text: tbd

text: not applicable

characteristic: subspecific genetic lineage name

text: not applicable

characteristic: subspecific genetic lineage rank

characteristic: title

text: not applicable

characteristic: watering regimen


AwKisoseq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AwKisoseq

characteristic: Submitter Id

text: not applicable

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

text: AwKisoseq

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

text: AwKisoseq

characteristic: geographic location (longitude)

text: Pearl millet

characteristic: growth facility

text: selfed

characteristic: isolation and growth condition

characteristic: light regimen

text: not applicable

characteristic: mineral nutrient regimen

characteristic: number of replicons

text: Cenchrus americanus

characteristic: organism

text: not applicable

characteristic: organism common name

text: healthy

characteristic: plant developmental stage

text: missing: not collected

characteristic: plant growth medium

text: seedling, vegetative and reproductive

characteristic: plant structure

text: not applicable

characteristic: plant treatment

text: diploid

characteristic: ploidy

characteristic: propagation

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: not applicable

text: missing: not collected

text: missing: not collected

text: growth chamber

text: not applicable

characteristic: sample health state

text: Cenchrus americanus

text: soil

text: missing: not collected

text: tbd

characteristic: source material identifiers

text: not applicable

text: not applicable

text: AwKisoseq

text: not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: normal phosphate

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

text: Pearl millet

text: selfed

text: not applicable

text: Cenchrus americanus

text: not applicable

text: healthy

text: missing: not collected

text: vegetative

text: not applicable

text: diploid

text: whole root

text: missing: not collected

characteristic: rooting conditions

text: missing: not collected

characteristic: rooting medium carbon

text: missing: not collected

characteristic: rooting medium macronutrients

text: missing: not collected

characteristic: rooting medium micronutrients

text: missing: not collected

characteristic: rooting medium organic supplements

text: not applicable

characteristic: rooting medium pH

text: missing: not collected

characteristic: rooting medium regulators

text: missing: not collected

characteristic: rooting medium solidifier

text: growth chamber

characteristic: sample disease status

text: not applicable

characteristic: sample volume or weight for DNA extraction

text: Cenchrus americanus

text: Hydroponics

characteristic: soil pH

text: missing: not collected

characteristic: soil_taxonomic/FAO classification

text: tbd

text: not applicable

characteristic: subspecific genetic lineage name

text: not applicable

characteristic: subspecific genetic lineage rank

characteristic: title

text: not applicable

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: low phosphate

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Pearl millet

characteristic: growth facility

text: selfed

characteristic: isolation and growth condition

characteristic: light regimen

text: not applicable

characteristic: mineral nutrient regimen

characteristic: number of replicons

text: Cenchrus americanus

characteristic: organism

text: not applicable

characteristic: organism common name

text: healthy

characteristic: plant developmental stage

text: missing: not collected

characteristic: plant growth medium

text: vegetative

characteristic: plant structure

text: not applicable

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: whole root

characteristic: propagation

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: not applicable

text: missing: not collected

text: missing: not collected

text: growth chamber

text: not applicable

characteristic: sample health state

text: Cenchrus americanus

text: Hydroponics

text: missing: not collected

text: tbd

characteristic: source material identifiers

text: not applicable

text: not applicable

text: not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: low phosphate

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

text: Pearl millet

text: selfed

text: not applicable

text: Cenchrus americanus

text: not applicable

text: healthy

text: missing: not collected

text: vegetative

text: not applicable

text: diploid

text: whole root

text: missing: not collected

characteristic: rooting conditions

text: missing: not collected

characteristic: rooting medium carbon

text: missing: not collected

characteristic: rooting medium macronutrients

text: missing: not collected

characteristic: rooting medium micronutrients

text: missing: not collected

characteristic: rooting medium organic supplements

text: not applicable

characteristic: rooting medium pH

text: missing: not collected

characteristic: rooting medium regulators

text: missing: not collected

characteristic: rooting medium solidifier

text: growth chamber

characteristic: sample disease status

text: not applicable

characteristic: sample volume or weight for DNA extraction

text: Cenchrus americanus

text: Hydroponics

characteristic: soil pH

text: missing: not collected

characteristic: soil_taxonomic/FAO classification

text: tbd

text: not applicable

characteristic: subspecific genetic lineage name

text: not applicable

characteristic: subspecific genetic lineage rank

characteristic: title

text: addition of acetone

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: low phosphate

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Pearl millet

characteristic: growth facility

text: selfed

characteristic: isolation and growth condition

characteristic: light regimen

text: not applicable

characteristic: mineral nutrient regimen

characteristic: number of replicons

text: Cenchrus americanus

characteristic: organism

text: not applicable

characteristic: organism common name

text: healthy

characteristic: plant developmental stage

text: missing: not collected

characteristic: plant growth medium

text: vegetative

characteristic: plant structure

text: not applicable

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: whole root

characteristic: propagation

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: not applicable

text: missing: not collected

text: missing: not collected

text: growth chamber

text: not applicable

characteristic: sample health state

text: Cenchrus americanus

text: Hydroponics

text: missing: not collected

text: tbd

characteristic: source material identifiers

text: not applicable

text: not applicable

text: addition of plant hormone MP3 in acetone


AwKRNAseq+P

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AwKRNAseq+P

characteristic: Submitter Id

text: normal phosphate

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

text: AwKRNAseq+P

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

text: AwKRNAseq+P

text: Pearl millet

text: selfed

text: not applicable

text: Cenchrus americanus

text: not applicable

text: healthy

text: missing: not collected

text: vegetative

text: not applicable

text: diploid

text: whole root

text: missing: not collected

characteristic: rooting conditions

text: missing: not collected

characteristic: rooting medium carbon

text: missing: not collected

characteristic: rooting medium macronutrients

text: missing: not collected

characteristic: rooting medium micronutrients

text: missing: not collected

characteristic: rooting medium organic supplements

text: not applicable

characteristic: rooting medium pH

text: missing: not collected

characteristic: rooting medium regulators

text: missing: not collected

characteristic: rooting medium solidifier

text: growth chamber

characteristic: sample disease status

text: not applicable

characteristic: sample volume or weight for DNA extraction

text: Cenchrus americanus

text: Hydroponics

characteristic: soil pH

text: missing: not collected

characteristic: soil_taxonomic/FAO classification

text: tbd

text: not applicable

characteristic: subspecific genetic lineage name

text: not applicable

characteristic: subspecific genetic lineage rank

text: AwKRNAseq+P

characteristic: title

text: not applicable

characteristic: watering regimen


AwKRNAseqLowP

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AwKRNAseqLowP

characteristic: Submitter Id

text: low phosphate

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

text: AwKRNAseqLowP

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

text: AwKRNAseqLowP

characteristic: geographic location (longitude)

text: Pearl millet

characteristic: growth facility

text: selfed

characteristic: isolation and growth condition

characteristic: light regimen

text: not applicable

characteristic: mineral nutrient regimen

characteristic: number of replicons

text: Cenchrus americanus

characteristic: organism

text: not applicable

characteristic: organism common name

text: healthy

characteristic: plant developmental stage

text: missing: not collected

characteristic: plant growth medium

text: vegetative

characteristic: plant structure

text: not applicable

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: whole root

characteristic: propagation

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: missing: not collected

text: not applicable

text: missing: not collected

text: missing: not collected

text: growth chamber

text: not applicable

characteristic: sample health state

text: Cenchrus americanus

text: Hydroponics

text: missing: not collected

text: tbd

characteristic: source material identifiers

text: not applicable

text: not applicable

text: AwKRNAseqLowP

text: not applicable


AwKRNAseqMock

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AwKRNAseqMock

characteristic: Submitter Id

text: low phosphate

characteristic: air temperature regimen

characteristic: collection date

text: missing: not collected

characteristic: culture rooting medium

text: AwKRNAseqMock

characteristic: description

characteristic: estimated size

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: 22� 18'

characteristic: geographic location (latitude)

text: AwKRNAseqMock

text: Pearl millet

text: selfed

text: not applicable

text: Cenchrus americanus

text: not applicable

text: healthy

text: missing: not collected

text: vegetative

text: not applicable

text: diploid

text: whole root

text: missing: not collected

characteristic: rooting conditions

text: missing: not collected

characteristic: rooting medium carbon

text: missing: not collected

characteristic: rooting medium macronutrients

text: missing: not collected

characteristic: rooting medium micronutrients

text: missing: not collected

characteristic: rooting medium organic supplements

text: not applicable

characteristic: rooting medium pH

text: missing: not collected

characteristic: rooting medium regulators

text: missing: not collected

characteristic: rooting medium solidifier

text: growth chamber

characteristic: sample disease status

text: not applicable

characteristic: sample volume or weight for DNA extraction

text: Cenchrus americanus

text: Hydroponics

characteristic: soil pH

text: missing: not collected

characteristic: soil_taxonomic/FAO classification

text: tbd

text: not applicable

characteristic: subspecific genetic lineage name

text: not applicable

characteristic: subspecific genetic lineage rank

text: AwKRNAseqMock

characteristic: title

text: addition of acetone

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: leaf bud

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: field

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Dovyalis caffra

characteristic: organism

text: Kei apple

characteristic: organism common name

text: reproductive

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf bud

characteristic: plant structure

text: seed

characteristic: propagation

text: healthy

characteristic: sample health state

text: Dovyalis caffra

text: ICRAF 04990

characteristic: source material identifiers

text: DCLB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: mature leaf

text: Kenya

text: field

text: Dovyalis caffra

text: Kei apple

text: reproductive

text: soil

text: mature leaf

text: seed

text: healthy

text: Dovyalis caffra

text: ICRAF 04990

text: DCML

characteristic: title


text: ILRI

text: public

characteristic: collection date

text: old bark

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: field

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Dovyalis caffra

characteristic: organism

text: Kei apple

characteristic: organism common name

text: reproductive

characteristic: plant developmental stage

text: soil

text: old bark

text: seed

text: healthy

text: Dovyalis caffra

text: ICRAF 04990

text: DCOB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILRI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: semimature leaf

text: Kenya

text: field

text: Dovyalis caffra

text: Kei apple

text: reproductive

text: soil

characteristic: plant growth medium

text: semimature leaf

characteristic: plant structure

text: seed

characteristic: propagation

text: healthy

characteristic: sample health state

text: Dovyalis caffra

text: ICRAF 04990

characteristic: source material identifiers

text: DCSL


text: ILRI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: stem

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: field

characteristic: growth facility

text: Dovyalis caffra

text: Kei apple

text: reproductive

text: soil

text: stem

text: seed

text: healthy

text: Dovyalis caffra

text: ICRAF 04990

text: DCST

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILRI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: young leaf

text: Kenya

text: field

characteristic: isolation and growth condition

characteristic: number of replicons

text: Dovyalis caffra

characteristic: organism

text: Kei apple

characteristic: organism common name

text: reproductive

characteristic: plant developmental stage

text: soil

text: young leaf

text: seed

text: healthy

text: Dovyalis caffra

text: ICRAF 04990

text: DCYL


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Instituto Nacional de Tecnologia Agropecuaria

characteristic: Submitter Id

characteristic: collection date

text: Argentina: Mendoza: La Consulta, 33.73S 69.12W, 15-Oct-2014, S. Panonto

characteristic: description

text: Argentina

text: Thrips origani

text: Thrips origani


characteristic: ENA-CHECKLIST

text: Instituto Nacional de Tecnologia Agropecuaria

text: public

text: Argentina

characteristic: geographic location (country and/or sea)

text: Thrips origani

text: Thrips origani

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Argentina: Jujuy: Yavi chico, 22.10S 65.45W, 10-Jan-2014, MI. Zamar

text: Argentina

text: Frankliniella tuberosi

text: Frankliniella tuberosi


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Argentina: Mendoza: Las Catitas, 33.30S 68.03W, 08-Dec-2014, C. de Borbon

text: Argentina

text: Frankliniella juancarlosi

text: Frankliniella juancarlosi


text: public

text: Argentina: Jujuy: Dique Cienaga, 24.31S 68.27W, 10-May-2015, MI. Zamar

text: Argentina

text: Frankliniella setipes

characteristic: organism

text: Frankliniella setipes


text: public

text: Argentina: Mendoza: Mayor Drummond, 33.03S 68.88W, 07-May-2013, C. de Borbon

text: Argentina

text: Frankliniella gracilis

text: Frankliniella gracilis


text: public

text: Argentina: Mendoza: Mayor Drummond, 33.03S 68.88W, 28-Nov-2014, C. de Borbon

text: Argentina

text: Frankliniella graminis

text: Frankliniella graminis


text: SC

text: public

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli

tag: Namespace:Clinical Bioinformatics Area

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND38751, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND38752, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND38753, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND38754, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND38756, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND38758, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND38759, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND38760, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND38761, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND38762, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND38763, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND38764, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: active surveillance in response to outbreak

text: AND38765, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND38766, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND38767, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND38768, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND38769, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND38770, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND38771, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND38772, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

unit: m

characteristic: depth

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Diplosoma virens

text: hermaphrodite

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: sea squirt metagenome

characteristic: specimen id

characteristic: specimen voucher

text: 75392c81-bd90-40dc-9d07-8317bb32448f-asg-metagenome

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult tunicate tissue

characteristic: environmental medium

text: Japan

characteristic: geographic location (country and/or sea)

text: Okinawa|Motobu|Back Reef at Bise

text: Rubbles of dead coral branches

text: adult

text: Diplosoma virens

characteristic: host scientific name

text: hermaphrodite

characteristic: host sex

text: EUICHI HIROSE

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

characteristic: investigation type

text: Tunicate: Diplosoma virens

text: marine benthic biome

text: sea squirt metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: obligate symbiosis at least for host

text: bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

text: 0e985078-bf17-4a0c-bffa-1ff7fdb07ec2-asg-bin.43


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: EUICHI HIROSE

characteristic: collected by

text: UNIVERSITY OF THE RYUKYUS

characteristic: collecting institution

text: adult tunicate tissue

text: Japan

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Okinawa|Motobu|Back Reef at Bise

characteristic: geographic location (region and locality)

text: Rubbles of dead coral branches

characteristic: habitat

text: adult

characteristic: host life stage

text: Diplosoma virens

text: hermaphrodite

characteristic: host taxid

text: EUICHI HIROSE

characteristic: identified by

text: UNIVERSITY OF THE RYUKYUS

text: metagenome-assembled genome

text: Tunicate: Diplosoma virens

text: marine benthic biome

characteristic: local environmental context

text: sea squirt metagenome

text: Prochloron didemni

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: obligate symbiosis at least for host

characteristic: relationship

characteristic: sample derived from

text: Prochloron didemni

text: Pacbio Sequel II

characteristic: specimen id

characteristic: specimen voucher

text: PROKKA (version 1.14.5)

text: b9583d77-8e9b-45ed-83df-05a67a548aae-asg-bin.57


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: APHA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: E. coli from poultry

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title


text: CGR

text: public

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_165-Negative_Extraction_1

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_161-Negative_PCR_Control_2

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_163-Mixed_Community_Positive_Control_2

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_170-Mixed_Community_Positive_Control_4_spiked_with_B3_Head

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_162-Mixed_Community_Positive_Control_1

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_166-Negative_Extraction_2

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_160-Negative_PCR_Control_1

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: CGR

text: public

text: PRJEB71806-Sample_164-Mixed_Community_Positive_Control_3

text: not provided

text: not provided

text: marine metagenome

text: marine metagenome


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: missing: lab stock

text: gDNA from young leaves

text: wild type

characteristic: genotype

text: Germany

text: missing: lab stock

characteristic: geographic location (latitude)

text: missing: lab stock

characteristic: geographic location (longitude)

text: greenhouse

characteristic: isolation and growth condition

text: Cardamine chenopodiifolia

text: 2-week-old seedlings

characteristic: plant developmental stage

text: greenhouse soil

characteristic: plant growth medium

text: young leaves

characteristic: plant structure

text: octoploid

characteristic: ploidy

text: wild type

characteristic: sample phenotype

text: Cardamine chenopodiifolia


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: missing: lab stock

text: gDNA from young leaves

text: wild type

text: Germany

text: missing: lab stock

text: missing: lab stock

text: greenhouse

text: Cardamine chenopodiifolia

text: 2-week-old seedlings

text: greenhouse soil

text: young leaves

text: octoploid

text: wild type

text: Cardamine chenopodiifolia


text: INSTITUTE OF MICROBIOLOGY, ETH ZURICH

text: public

characteristic: SRA accession

tag: Namespace:INSTITUTE OF MICROBIOLOGY, ETH ZURICH

characteristic: Submitter Id

text: terrestrial environmental zone [ENVO:01001199]

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Streptomyces chodovensis sp. nov. isolated from bare soil developing on Miocene lacustrine sediment, Czech Republic

characteristic: description

characteristic: elevation

text: clay sediment [ENVO:01000120]

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: Sokolov coal mining area

characteristic: geographic location (region and locality)

text: area of barren land [ENVO:01000752], bare soil [ENVO:01001616]

characteristic: local environmental context

text: Streptomyces sp. AC2023

characteristic: organism

characteristic: project name

text: Streptomyces sp. AC2023

text: BCCO 10_0861

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Cerro


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: NMRCH

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:976-242857

text: National Medical Research Center for Hematology

text: human

characteristic: common name

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: blood


text: NMRCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:976-242858

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242859

characteristic: Submitter Id

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242860

characteristic: collection date

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242861

text: human

text: Russia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242862

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242863

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242864

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242865

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242866

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242867

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: female

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242868

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242869

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242870

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242871

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242872

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242873

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242874

text: National Medical Research Center for Hematology

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242875

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242876

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:977-242877

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood


text: NMRCH

text: public

text: ena-SAMPLE-TAB-11-01-2024-18:05:25:978-242878

text: human

text: Russia

text: Homo sapiens

text: Homo sapiens

text: male

text: blood