characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: Kazuhiro Kogame

characteristic: collection date

text: gametophyte

text: Japan

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Hapterophycus canaliculatus

text: haploid

text: RNA extracted from Hapterophycus canaliculatus strain Oshoro strain 6 for analysis of differential gene expression..

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Oshoro, Otaru, Hokkaido, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Hapterophycus canaliculatus

text: female

text: Oshoro strain 6

text: whole thallus

text: RNA extracted from Hapterophycus canaliculatus strain Oshoro strain 6.


status: PUBLIC

text: Wild harvested material allowed to recover for 4 days in 140 mm Petri dish culture in Provasoli-enriched (1/2 strength) seawater after transport, under white mid-light, 13C, 12h/12h

tag: attribute

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Genoscope CEA

characteristic: INSDC last update

text: public

tag: Namespace:Genoscope CEA

text: Kazuhiro Kogame

text: gametophyte

characteristic: generation

text: Japan

characteristic: geographic location (country and/or sea)

text: missing: data agreement established pre-2023

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kazuhiro Kogame

text: Morphology, genome sequenced

text: Hapterophycus canaliculatus

characteristic: organism

text: haploid

characteristic: ploidy

characteristic: sample alias

text: RNA extracted from Hapterophycus canaliculatus strain Oshoro strain 9 for analysis of differential gene expression..

characteristic: sample description

text: coastal

text: Pacific Ocean

text: Oshoro, Otaru, Hokkaido, Japan

text: marine

text: Hapterophycus canaliculatus

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: Oshoro strain 9

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Hapterophycus canaliculatus strain Oshoro strain 9.

characteristic: title


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: CTAB/Turbo Dnase

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: gametophyte

text: Japan

text: Kazuhiro Kogame

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Hapterophycus canaliculatus

text: haploid

text: RNA extracted from Hapterophycus canaliculatus strain Oshoro St. 2 f1 for RNA-seq-based genome annotation.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Oshoro, Otaru, Hokkaido, Japan

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Hapterophycus canaliculatus

text: female

text: Oshoro St. 2 f1

text: whole thallus

text: RNA extracted from Hapterophycus canaliculatus strain Oshoro St. 2 f1.


text: 140 mm Petri dish cultures in diluted (5%) Provasoli-enriched seawater. Grown under 14h:10h white light at 14C. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

text: Several harvests August 2015-November 2016

text: Genoscope CEA

characteristic: INSDC last update

text: public

text: Ploidy unknown. Sampled in October 1986.

characteristic: additional details

text: Eric C. Henry

text: nd

characteristic: generation

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: E. C. Henry

text: Morphology, genome sequenced

text: Heribaudiella fluviatilis

characteristic: organism

characteristic: sample alias

text: DNA extracted from Heribaudiella fluviatilis strain SAG 13.90 for genome sequencing.

characteristic: sample description

text: freshwater

text: inland

text: Spring of the river Aach, Baden-Wurtemberg, Germany

text: fresh

text: Heribaudiella fluviatilis

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 13.90

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Heribaudiella fluviatilis strain SAG 13.90.

characteristic: title


text: Petri dish cultures.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: Extraction date

text: Qiagen RNeasy kit

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: Eric C. Henry

characteristic: collection date

text: nd

text: Germany

text: E. C. Henry

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Heribaudiella fluviatilis

text: RNA extracted from Heribaudiella fluviatilis strain SAG 13.90 for RNA-seq-based genome annotation.

text: freshwater

characteristic: sampling ecosystem

text: inland

characteristic: sampling sea

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Heribaudiella fluviatilis

text: nd

text: SAG 13.90

text: whole thallus

text: RNA extracted from Heribaudiella fluviatilis strain SAG 13.90.


text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: generation

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Heterosigma akashiwo

characteristic: organism

characteristic: sample alias

text: DNA extracted from Heterosigma akashiwo strain CCMP452 for genome sequencing.

characteristic: sample description

text: Heterosigma akashiwo

characteristic: sequencing centre sample code

text: nd

characteristic: sex

characteristic: strain

text: cells

characteristic: tissue type

text: DNA extracted from Heterosigma akashiwo strain CCMP452.

characteristic: title


text: Grown in O3 medium

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-FIRST-PUBLIC

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: missing: data agreement established pre-2023

characteristic: collection date

text: Heterosigma akashiwo

text: Heterosigma akashiwo

text: nd

text: cells


text: DNA

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: generation

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Philippe Potin

characteristic: identification by

text: Himanthalia elongata

characteristic: organism

text: diploid

characteristic: ploidy

text: DNA extracted from Himanthalia elongata strain Himel1 for genome sequencing.

text: Himanthalia elongata

text: nd

text: meristem

text: DNA extracted from Himanthalia elongata strain Himel1.


HimA

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

text: HimA (RNA)

characteristic: DNA or RNA sample code

characteristic: ENA-FIRST-PUBLIC

text: CTAB

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: SRA accession

text: HimA

text: Philippe Potin

text: Himanthalia elongata

text: diploid

text: HimA

characteristic: sample alias

text: RNA extracted from Himanthalia elongata strain Himel1 for RNA-seq-based genome annotation.

characteristic: sample description

text: Himanthalia elongata

characteristic: sequencing centre sample code

text: nd

characteristic: sex

characteristic: strain

text: meristem

characteristic: tissue type

text: RNA extracted from Himanthalia elongata strain Himel1.

characteristic: title


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater plus antibiotics. Grown under 16:8h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Contains a phaeovirus. Brother of the female strain LdigPH10-18f. Publication: McKeown, D.A., Stevens, K., Peters, A.F., Bond, P., Harper, G.M., Brownlee, C., Murray T. Brown & Schroeder, D.C. 2017 ISME Journal 11, 2869-2873.

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Laminaria digitata

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Laminaria digitata strain LdigPH10-18mv for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy, Santec, Britanny, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Laminaria digitata

text: male

text: morphology, genome sequencing

characteristic: sex determination method

text: whole thallus

text: DNA extracted from Laminaria digitata strain LdigPH10-18mv.


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater. Grown under continuous red light.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Akira F. Peters

text: gametophyte

text: France

text: Akira F. Peters

text: Morphology, genome sequenced

text: Laminaria digitata

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Perharidy, Santec, Britanny, France

text: marine

text: Laminaria digitata

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: morphology, genome sequencing

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Petri dish cultures in Provasoli-enriched seawater. Grown under continuous red light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: OmniPrep

text: Genoscope CEA

text: public

characteristic: Submitter Id

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Laminaria digitata

characteristic: organism

text: haploid

characteristic: ploidy

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy, Santec, Britanny, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Laminaria digitata

text: male

text: morphology, genome sequencing

characteristic: sex determination method

text: whole thallus, non-fertile


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit with RLC buffer

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: SRA accession

text: Akira F. Peters

text: gametophyte

text: France

text: Akira F. Peters

text: Morphology, genome sequenced

text: Laminaria digitata

text: haploid

characteristic: sample alias

text: RNA extracted from Laminaria digitata strain LdigPH10-18mv for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

text: English Channel

text: Perharidy, Santec, Britanny, France

text: marine

text: Laminaria digitata

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: morphology, genome sequencing

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Laminaria digitata strain LdigPH10-18mv.

characteristic: title


characteristic: Alternative strain name

text: Three Petri dish cultures in Provasoli-enriched seawater plus antibiotics. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genoscope CEA

text: public

characteristic: Submitter Id

text: Original gametophyte isolated from the field. Publication: Peters, A.F. & Ellertsdottir, E. 1996 Nova Hedwigia 62, 341-349. Sampled in 1994.

characteristic: additional details

text: Elin Ellertsdottir (student of Akira Peters)

characteristic: collection date

text: sporophyte

characteristic: generation

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Elin Ellertsdottir/Akira Peters

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Laminarionema elsbetiae

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Laminarionema elsbetiae strain ELsaHSoW15 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: North Sea

characteristic: sampling sea

text: Helgoland, Germany

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Laminarionema elsbetiae

characteristic: sex determination method

text: whole thallus

text: DNA extracted from Laminarionema elsbetiae strain ELsaHSoW15.


characteristic: Alternative strain name

text: Air-bubbled 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics. Grown under 16:8h white light and at 13C.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit with RLC buffer

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6.40 ( same profile as previous extraction, multiple bands but it should be the normal profile)

characteristic: RNA RIN value

characteristic: SRA accession

text: missing: data agreement established pre-2023

text: sporophyte

text: Germany

text: Elin Ellertsdottir/Akira Peters

text: Morphology, genome sequenced

text: Laminarionema elsbetiae

text: haploid

characteristic: sample alias

text: RNA extracted from Laminarionema elsbetiae strain ELsaHSoW15 for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

text: North Sea

text: Helgoland, Germany

text: marine

text: Laminarionema elsbetiae

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Laminarionema elsbetiae strain ELsaHSoW15.

characteristic: title


DNA_Mpyr-m P11B4_23-08-2019

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: DNA_Mpyr? P11B4 (23/08/2019)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

text: Genoscope CEA

text: public

text: DNA_Mpyr-m P11B4_23-08-2019

characteristic: Submitter Id

text: Male gametophyte derived from field-isolated sporophyte P11. DNA is available from the parental sporophyte. Sampled in December 2010.

characteristic: additional details

text: Carolina Camus

characteristic: collection date

text: giant kelp

characteristic: common name

text: gametophyte

characteristic: generation

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: C. Camus

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Macrocystis pyrifera

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA_Mpyr-m P11B4_23-08-2019

text: DNA extracted from Macrocystis pyrifera strain P11B4 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Pargua, Puerto Montt, Chile

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Macrocystis pyrifera

text: male

text: morphology, genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

text: DNA extracted from Macrocystis pyrifera strain P11B4.


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater. Grown under continuous red light.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Female gametophyte derived from field-isolated sporophyte P11. DNA is available from the parental sporophyte. Sampled in December 2010.

text: Carolina Camus

text: giant kelp

text: gametophyte

text: Chile

text: C. Camus

text: Morphology, genome sequenced

text: Macrocystis pyrifera

text: haploid

characteristic: sample alias

text: DNA extracted from Macrocystis pyrifera strain P11A1 for genome sequencing.

characteristic: sample description

text: coastal

text: Pacific Ocean

text: Pargua, Puerto Montt, Chile

text: marine

text: Macrocystis pyrifera

characteristic: sequencing centre sample code

text: female

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Macrocystis pyrifera strain P11A1.

characteristic: title


text: Petri dish cultures in Provasoli-enriched seawater. Grown under continuous red light at 13C. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

text: Genoscope CEA

text: public

characteristic: additional details

text: Carolina Camus

characteristic: collection date

text: giant kelp

characteristic: common name

text: gametophyte

characteristic: generation

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: C. Camus

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Macrocystis pyrifera

characteristic: organism

text: haploid

characteristic: ploidy

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Pargua, Puerto Montt, Chile

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Macrocystis pyrifera

text: female

characteristic: sex determination method

text: whole thallus, non-fertile


text: 140 mm Petri dish cultures in Provasoli-enriched (0.01%) seawater plus antibiotics. Grown under 10:14h white light:dark (10-30 mol m-2s-1 photon fluence rate) at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: NucleoSpin Plant II ethanol precipitation. Eluted in NE Buffer 5mM TrisHCl pH 8.5

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Carolina Camus

text: giant kelp

text: gametophyte

text: Chile

text: C. Camus

text: Morphology, genome sequenced

text: Macrocystis pyrifera

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: Pacific Ocean

text: Pargua, Puerto Montt, Chile

text: marine

text: Macrocystis pyrifera

characteristic: sequencing centre sample code

text: female

characteristic: sex

characteristic: strain

text: whole thallus, non-fertile

characteristic: tissue type

characteristic: title


text: 140 mm Petri dish cultures in Provasoli-enriched seawater. Grown under 12:12h white light at 13C. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Qiagen RNeasy kit with RLC buffer

text: Genoscope CEA

text: public

characteristic: RNA RIN value

text: Derived from a heterozygous, field-isolated sporophyte. Myr cla04 female and Myr cla05 male may be sister and brother. Publication: Peters, A.F. 1988 British Phycological Journal 23, 299-306.

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Myriotrichia claviformis

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Myriotrichia clavaeformis strain Myr cla04 female for analysis of differential gene expression..

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

text: Finavarra, Co. Clare, Ireland

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Myriotrichia claviformis

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: Myr cla04 female

text: whole thallus

text: RNA extracted from Myriotrichia clavaeformis strain Myr cla04 female.


text: Petri dish cultures. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Heterozygous sporophyte derived from a cross between Myr cla04 female and Myr cla05 male, which may be sister and brother. Publication: Peters, A.F. 1988 British Phycological Journal 23, 299-306.

text: Akira F. Peters

text: sporophyte

text: Ireland

text: Akira F. Peters

text: Morphology, transcriptome sequenced

text: Myriotrichia claviformis

text: diploid

characteristic: sample alias

text: RNA extracted from Myriotrichia clavaeformis strain Myr cla SP 12 for analysis of differential gene expression..

characteristic: sample description

text: coastal

text: Arctic Ocean

text: Finavarra, Co. Clare, Ireland

text: marine

text: Myriotrichia claviformis

characteristic: sequencing centre sample code

characteristic: sex

text: Myr cla SP 12

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Myriotrichia clavaeformis strain Myr cla SP 12.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Qiagen RNeasy kit with RLC buffer

text: Genoscope CEA

text: public

characteristic: RNA RIN value

text: Derived from a heterozygous, field-isolated sporophyte. Myr cla05 male and Myr cla04 female may be brother and sister. Publication: Peters, A.F. 1988 British Phycological Journal 23: 299-306.

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Myriotrichia claviformis

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Myriotrichia clavaeformis strain Myr cla05 male for analysis of differential gene expression..

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

text: Finavarra, Co. Clare, Ireland

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Myriotrichia claviformis

text: male

text: genetic cross, genome sequencing

characteristic: sex determination method

text: Myr cla05 male

text: whole thallus

text: RNA extracted from Myriotrichia clavaeformis strain Myr cla05 male.


text: 140 mm round Petri dish cultures in natural sea water implemented with 0.01% Provasoli enrichment plus antibiotic under 10h:14h light:dark (white fluorescent light of 10-30 mol m-2s-1 photon fluence rate) at 13C. Before harvesting, individuals from each Petri dish were transplanted into freshly prepared culture medium in a new Petri dish and cryotubes for maintenance and further harvesting. Harvesting was carried out as follows: the medium from the Petri dish was discarded. All partheno-sporophytes were collected using a plastic squeegee, rapidly dried on clean absorbent paper, put in a 96 well plate containing a metal ball and frozen in liquid nitrogen. Samples were kept at -80C before DNA extraction. For extraction, tissues were lyophilized and crushed, using the metal ball, in a crusher. Genomic DNA was extracted using the MN Nucleospin Plant DNA kit.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: NucleoSpin Plant II, NucleoSpin Plant2 MN

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Akira F. Peters

text: gametophyte

text: Ireland

text: Akira F. Peters

text: Morphology, genome sequenced

text: Myriotrichia claviformis

text: haploid

characteristic: sample alias

text: DNA extracted from Myriotrichia clavaeformis strain Myr cla05 male for genome sequencing.

characteristic: sample description

text: coastal

text: Atlantic Ocean

text: Finavarra, Co. Clare, Ireland

text: marine

text: Myriotrichia claviformis

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: genetic cross, genome sequencing

text: Myr cla05 male

characteristic: strain

text: whole thallus, mixed stages

characteristic: tissue type

text: DNA extracted from Myriotrichia clavaeformis strain Myr cla05 male.

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Genoscope CEA

text: public

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

characteristic: generation

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

characteristic: identification method

text: Myriotrichia claviformis

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Myriotrichia clavaeformis strain Myr cla04 female for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

text: Finavarra, Co. Clare, Ireland

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Myriotrichia claviformis

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: Myr cla04 female

text: whole thallus, mixed stages

text: DNA extracted from Myriotrichia clavaeformis strain Myr cla04 female.


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: 11-2015 and 11-2016

characteristic: Extraction date

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: missing: data agreement established pre-2023

text: Philippe Potin

text: Pelvetia canaliculata

text: diploid

characteristic: sample alias

text: DNA extracted from Pelvetia canaliculata strain Pelv.cana1 for genome sequencing.

characteristic: sample description

text: Pelvetia canaliculata

characteristic: sequencing centre sample code

text: monoecious

characteristic: sex

characteristic: strain

text: meristem

characteristic: tissue type

text: DNA extracted from Pelvetia canaliculata strain Pelv.cana1.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CTAB

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: collection date

characteristic: generation

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Philippe Potin

characteristic: identification by

text: Pelvetia canaliculata

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Pelvetia canaliculata strain Pelv.cana1 for RNA-seq-based genome annotation.

text: Pelvetia canaliculata

text: monoecious

text: meristem

text: RNA extracted from Pelvetia canaliculata strain Pelv.cana1.


text: 2L flask culture in MIEB12 freshwater medium at 20C 12:12 day/night, white light (thermostatic growth cabinet)

characteristic: Culture conditions

text: DNA

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Publication: Lang, I., Hodac, L., Friedl, T. and Feussner, I. 2011 BMC Plant Biology 11, 124. Sampled in 1965.

characteristic: additional details

text: R. M. Brown

text: nd

text: R. M. Brown

text: Morphology, genome sequenced

characteristic: identification method

text: Phaeothamnion confervicola

characteristic: sample alias

text: DNA extracted from Phaeothamnion wetherbeei strain SAG 119.79 for genome sequencing.

characteristic: sample description

text: inland

characteristic: sampling sea

text: Europe?

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Phaeothamnion confervicola

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 119.79

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Phaeothamnion wetherbeei strain SAG 119.79.

characteristic: title


text: 2 L flask culture in Provasoli-enriched seawater at room temperature.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: R. M. Brown

characteristic: collection date

text: nd

characteristic: generation

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: R. M. Brown

characteristic: identification by

text: Morphology, genome sequenced

text: Phaeothamnion confervicola

characteristic: organism

text: inland

text: Europe?

text: fresh

text: Phaeothamnion confervicola

text: nd

text: SAG 119.79

text: whole thallus


text: 140 mm Petri dish with agar+MIEB12 covered by liquid MIEB12 medium , 16C medium-light 12h/12h

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

text: OmniPrep Gbioscience

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: R. M. Brown

text: nd

text: R. M. Brown

text: Morphology, genome sequenced

characteristic: identification method

text: Phaeothamnion confervicola

characteristic: sample alias

characteristic: sample description

text: inland

characteristic: sampling sea

text: Europe?

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Phaeothamnion confervicola

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 119.79

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: 2 L flask culture in Provasoli-enriched seawater under natural light.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: R. M. Brown

characteristic: collection date

text: nd

characteristic: generation

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: R. M. Brown

characteristic: identification by

text: Morphology, genome sequenced

text: Phaeothamnion confervicola

characteristic: organism

text: inland

text: Europe?

text: fresh

text: Phaeothamnion confervicola

text: nd

text: SAG 119.79

text: whole thallus


Pw sol2

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: Pw sol2

characteristic: DNA or RNA sample code

text: extraction direct zol

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pw sol2

characteristic: Submitter Id

characteristic: additional details

text: R. M. Brown

text: nd

text: R. M. Brown

text: Morphology, genome sequenced

characteristic: identification method

text: Phaeothamnion confervicola

text: Pw sol2

characteristic: sample alias

text: RNA extracted from Phaeothamnion wetherbeei strain SAG 119.79 for RNA-seq-based genome annotation.

characteristic: sample description

text: inland

characteristic: sampling sea

text: Europe?

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Phaeothamnion confervicola

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 119.79

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Phaeothamnion wetherbeei strain SAG 119.79.

characteristic: title


RNA phaeo

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: RNA phaeo

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey Nagel RNAplus

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: RNA phaeo

text: R. M. Brown

characteristic: collection date

text: nd

characteristic: generation

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: R. M. Brown

characteristic: identification by

text: Morphology, genome sequenced

text: Phaeothamnion confervicola

characteristic: organism

text: RNA phaeo

text: inland

text: Europe?

text: fresh

text: Phaeothamnion confervicola

text: nd

text: SAG 119.79

text: whole thallus


text: Petri dish cultures. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

text: August 2016

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Genome of this strain sequenced as part of the Phaeoexplorer project. Sampled in April 1991.

characteristic: additional details

text: E. Kusel-Fetzmann

text: nd

text: Austria

text: E. Kusel-Fetzmann

text: Morphology, genome sequenced

characteristic: identification method

text: Pleurocladia lacustris

text: haploid

characteristic: ploidy

characteristic: sample alias

text: DNA extracted from Pleurocladia lacustris strain SAG 25.93 for genome sequencing.

characteristic: sample description

text: freshwater

characteristic: sampling ecosystem

text: Inland

characteristic: sampling sea

text: River Fischa-Dagnitz, Austria

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Pleurocladia lacustris

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 25.93

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Pleurocladia lacustris strain SAG 25.93.

characteristic: title


text: Petri dish cultures. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: 07-2020 to 08-2020

characteristic: Extraction date

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E. Kusel-Fetzmann

characteristic: collection date

text: nd

characteristic: generation

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: E. Kusel-Fetzmann

characteristic: identification by

text: Morphology, genome sequenced

text: Pleurocladia lacustris

characteristic: organism

text: haploid

text: freshwater

text: Inland

text: River Fischa-Dagnitz, Austria

text: fresh

text: Pleurocladia lacustris

text: nd

text: SAG 25.93

text: whole thallus


text: Petri dish cultures. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

text: Qiagen RNeasy kit

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: E. Kusel-Fetzmann

text: nd

text: Austria

text: E. Kusel-Fetzmann

text: Morphology, genome sequenced

characteristic: identification method

text: Pleurocladia lacustris

text: haploid

characteristic: ploidy

characteristic: sample alias

text: RNA extracted from Pleurocladia lacustris strain SAG 25.93 for RNA-seq-based genome annotation.

characteristic: sample description

text: freshwater

characteristic: sampling ecosystem

text: Inland

characteristic: sampling sea

text: River Fischa-Dagnitz, Austria

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Pleurocladia lacustris

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 25.93

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Pleurocladia lacustris strain SAG 25.93.

characteristic: title


text: Petri dish cultures. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

text: E. Kusel-Fetzmann

characteristic: collection date

text: nd

characteristic: generation

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: E. Kusel-Fetzmann

characteristic: identification by

text: Morphology, genome sequenced

text: Pleurocladia lacustris

characteristic: organism

text: haploid

text: RNA extracted from Pleurocladia lacustris strain SAG 25.93 for analysis of differential gene expression..

text: freshwater

text: Inland

text: River Fischa-Dagnitz, Austria

text: fresh

text: Pleurocladia lacustris

text: nd

text: SAG 25.93

text: whole thallus


text: Petri dish cultures in diluted (5%) natural seawater.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: June 2016

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hiroshi Kawai (Kobe University) confirms that SAG 2381 is Porterinema, he observed pyrenoids and characteristic plurilocular zoidangia.

characteristic: additional details

text: E. Kusel-Fetzmann

text: nd

text: Germany

text: E. Kusel-Fetzmann

text: Morphology, genome sequenced

characteristic: identification method

text: Porterinema fluviatile

characteristic: sample alias

text: DNA extracted from Porterinema fluviatile strain SAG 2381 for genome sequencing.

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Inland

characteristic: sampling sea

text: Radelsee-canal to Breitling, Rostock-Warnemunde, Germany

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Porterinema fluviatile

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 2381

characteristic: strain

text: whole thallus

characteristic: tissue type

text: DNA extracted from Porterinema fluviatile strain SAG 2381.

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E. Kusel-Fetzmann

characteristic: collection date

text: nd

characteristic: generation

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: E. Kusel-Fetzmann

characteristic: identification by

text: Morphology, genome sequenced

text: Porterinema fluviatile

characteristic: organism

text: freshwater

text: Inland

text: fresh

text: Porterinema fluviatile

text: nd

text: SAG 2381

text: whole thallus


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Qiagen RNeasy kit

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: E. Kusel-Fetzmann

text: nd

text: Germany

text: E. Kusel-Fetzmann

text: Morphology, genome sequenced

characteristic: identification method

text: Porterinema fluviatile

characteristic: sample alias

text: RNA extracted from Porterinema fluviatile strain SAG 2381 for RNA-seq-based genome annotation.

characteristic: sample description

text: freshwater

characteristic: sampling ecosystem

text: Inland

characteristic: sampling sea

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Porterinema fluviatile

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 2381

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Porterinema fluviatile strain SAG 2381.

characteristic: title


text: Petri dish cultures in natural seawater.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E. Kusel-Fetzmann

characteristic: collection date

text: nd

characteristic: generation

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: E. Kusel-Fetzmann

characteristic: identification by

text: Morphology, genome sequenced

text: Porterinema fluviatile

characteristic: organism

text: RNA extracted from Porterinema fluviatile strain SAG 2381 for analysis of differential gene expression..

text: freshwater

text: Inland

text: fresh

text: Porterinema fluviatile

text: nd

text: SAG 2381

text: whole thallus


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Qiagen RNeasy kit

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: E. Kusel-Fetzmann

text: nd

text: Germany

text: E. Kusel-Fetzmann

text: Morphology, genome sequenced

characteristic: identification method

text: Porterinema fluviatile

characteristic: sample alias

characteristic: sample description

text: freshwater

characteristic: sampling ecosystem

text: Inland

characteristic: sampling sea

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Porterinema fluviatile

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 2381

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Three Petri dish cultures in Provasoli-enriched seawater plus antibiotics added at the end of the culture process. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Derived from a spore isolated from a unilocular sporangium on an epiphytic individual growing on Ascophyllum nodosum.

text: Christophe Destombe

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Christophe Destombe

characteristic: identification by

text: Morphology, genome sequenced

text: Pylaiella littoralis

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Pylaiella littoralis strain U1.48 for genome sequencing.

text: coastal

text: English Channel

text: Pont de la Corde, Brittany, France

text: marine

text: Pylaiella littoralis

text: nd

text: whole thallus

text: DNA extracted from Pylaiella littoralis strain U1.48.


text: Air-bubbled 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics. Grown under 16:8h white light and at 13C. Bacterial contamination.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Christophe Destombe

text: gametophyte

text: France

text: Christophe Destombe

text: Morphology, genome sequenced

characteristic: identification method

text: Pylaiella littoralis

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Pont de la Corde, Brittany, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Pylaiella littoralis

characteristic: sequencing centre sample code

text: nd

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Air-bubbled 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients. Grown under 16:8h white light and at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Christophe Destombe

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Christophe Destombe

characteristic: identification by

text: Morphology, genome sequenced

text: Pylaiella littoralis

characteristic: organism

text: haploid

characteristic: ploidy

text: coastal

text: English Channel

text: Pont de la Corde, Brittany, France

text: marine

text: Pylaiella littoralis

text: nd

text: whole thallus


text: Petri dish cultures with antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Christophe Destombe

text: gametophyte

text: France

text: Christophe Destombe

text: Morphology, genome sequenced

characteristic: identification method

text: Pylaiella littoralis

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Pont de la Corde, Brittany, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Pylaiella littoralis

characteristic: sequencing centre sample code

text: nd

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Air-bubbled 2 L flask culture in Provasoli-enriched seawater. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: RNA_F24-1 (29/08/2019)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

text: Pool of 5 extractions. MN RNAplus and Qiagen RNeasy plus Qiagen RNeasy clean-up

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

text: Fragment of an epiphyte on Ascophyllum nodosum isolated on the Ile de Sein, Brittany, France on the 02/05/2014.

text: Christophe Destombe

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Christophe Destombe

characteristic: identification by

text: Morphology, transcriptome sequenced

text: Pylaiella littoralis

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Pylaiella littoralis strain F24 for analysis of differential gene expression..

text: coastal

text: English Channel

text: Ile de Sein, Brittany, France

text: marine

text: Pylaiella littoralis

text: whole thallus

text: RNA extracted from Pylaiella littoralis strain F24.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Qiagen RNeasy kit RLC buffer plus PVP 2.5%

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Christophe Destombe

text: sporophyte

text: France

text: Christophe Destombe

text: Morphology, transcriptome sequenced

characteristic: identification method

text: Pylaiella littoralis

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Ile de Sein, Brittany, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Pylaiella littoralis

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit RLC buffer plus PVP 5%

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

text: Christophe Destombe

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Christophe Destombe

characteristic: identification by

text: Morphology, genome sequenced

text: Pylaiella littoralis

characteristic: organism

text: haploid

characteristic: ploidy

text: RNA extracted from Pylaiella littoralis strain U1.48 for analysis of differential gene expression..

text: coastal

text: English Channel

text: Pont de la Corde, Brittany, France

text: marine

text: Pylaiella littoralis

text: nd

text: whole thallus

text: RNA extracted from Pylaiella littoralis strain U1.48.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Christophe Destombe

text: gametophyte

text: France

text: Christophe Destombe

text: Morphology, genome sequenced

characteristic: identification method

text: Pylaiella littoralis

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Pont de la Corde, Brittany, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Pylaiella littoralis

characteristic: sequencing centre sample code

text: nd

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater. Grown under 16:8h white light at 15C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: Extraction date

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gametophyte derived from field-isolated sporophyte. SLPER63m5 and SLPER63f are brother and sister. Brother of the strain (SLPER63m3) whose genome was sequenced as part of the Phaeoexplorer project. . Light 24:0

text: Chloe Jollivet

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Chloe Jollivet

characteristic: identification by

text: Morphology, genome sequenced

text: Saccharina latissima

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Saccharina latissima strain SLPER63m3 for genome sequencing.

text: coastal

text: English Channel

text: Perharidy, Santec, Britanny, France

text: marine

text: Saccharina latissima

text: male

text: morphology, genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

text: DNA extracted from Saccharina latissima strain SLPER63m3.


text: Air-bubbled 1 L flask cultures in Provasoli-enriched seawater. Grown under red light at 15C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Chloe Jollivet

text: gametophyte

text: France

text: Chloe Jollivet

text: Morphology, genome sequenced

characteristic: identification method

text: Saccharina latissima

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy, Santec, Britanny, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

text: male

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater plus antibiotics. Grown under 16:8h white light at 15C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gametophyte derived from field-isolated sporophyte. SLPER63f and SLPER63m are sister and brother.

text: Chloe Jollivet

characteristic: collection date

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Chloe Jollivet

characteristic: identification by

text: Morphology, genome sequenced

text: Saccharina latissima

characteristic: organism

text: haploid

characteristic: ploidy

text: DNA extracted from Saccharina latissima strain SLPER63f7 for genome sequencing.

text: coastal

text: English Channel

text: Perharidy, Santec, Britanny, France

text: marine

text: Saccharina latissima

text: female

characteristic: sex determination method

text: whole thallus

text: DNA extracted from Saccharina latissima strain SLPER63f7.


text: Air-bubbled 2 L flask cultures in Provasoli-enriched seawater. Grown under continous red light.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

text: 1.55 1.56 1.48

characteristic: DNA or RNA quality (ratio 260/280)

text: DNA_PHAEO212-1/DNA_PHAEO212-2/DNA_PHAEO212-3

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: SRA accession

text: DNA_PHAEO212-1 DNA_PHAEO212-2 DNA_PHAEO212-3

characteristic: Submitter Id

characteristic: additional details

text: Chloe Jollivet

text: gametophyte

text: France

text: Chloe Jollivet

text: Morphology, genome sequenced

characteristic: identification method

text: Saccharina latissima

text: haploid

text: 2.06 2.16 1.90

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy, Santec, Britanny, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

text: male

characteristic: sex

characteristic: strain

text: whole thallus

characteristic: tissue type

characteristic: title


text: F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then incubated at 13C for a further 7 days before harvesting (control sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 30/10/2022

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

text: missing: data agreement established pre-2023

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-95 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: Genetic cross of Perharidy and Saint Guenole strains, France

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-95.


text: F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then heat stressed at 21C for 7 days before harvesting (7 day stress sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 31/10/2022

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


text: F2 sporophytes derived from a bulk gametophyte cross between two strains of Saccharina latissima collected at Perharidy (near Roscoff, north Finistere, Brittany, France, January 2016, strain SLPER139) and Saint Guenole (south Finistere, Brittany, France, October 2015, strain SLSTG055) were cultivated on an open water rope system in Morlaix Bay in 2017.The F1 hybrid was strain F1.27.2. Under laboratory conditions, three small tissue disks cut from the blade of an F2 sporophyte individual were acclimatised for 4 days at 13C and then heat stressed at 21C for 7 days followed by an incubation at 13C for 16 days to allow recovery before harvesting (recovery sample). Fv/Fm measurements were carried out after heat stress and after the recovery period.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 17/11/2022

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 30/10/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-96 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-96.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 31/10/2022

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 17/11/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 30/10/2022

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

text: RNA extracted from Saccharina latissima strain F2.27.2-122 for analysis of differential gene expression..

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

text: RNA extracted from Saccharina latissima strain F2.27.2-122.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 31/10/2022

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 17/11/2022

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 30/10/2022

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-7 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-7.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 31/10/2022

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 17/11/2022

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 30/10/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-18 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-18.


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: 19/10/2017 + 31/10/2022

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 17/11/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Macherey-Nagel RNAplus plus 1 wash RW2

text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: sporophyte

text: France

text: Zofia Nehr

text: Morphology

characteristic: identification method

text: Saccharina latissima

text: diploid

characteristic: sample alias

characteristic: sample description

text: coastal

characteristic: sampling ecosystem

text: Atlantic Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Saccharina latissima

characteristic: sequencing centre sample code

characteristic: sex

characteristic: strain

text: blade disks

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Macherey-Nagel RNAplus plus 1 wash RW2

characteristic: Extraction method

text: 19/10/2017 + 30/10/2022

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: RNA RIN value

characteristic: collection date

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zofia Nehr

characteristic: identification by

text: Morphology

text: Saccharina latissima

characteristic: organism

text: diploid

characteristic: ploidy

text: RNA extracted from Saccharina latissima strain F2.27.2-25 for analysis of differential gene expression..

text: coastal

text: Atlantic Ocean

text: marine

text: Saccharina latissima

characteristic: sex determination method

text: blade disks

text: RNA extracted from Saccharina latissima strain F2.27.2-25.