characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SPA

text: not reported

text: Blood 3/12/20 - NSF, WBC 8.7k, normal differential. Iron wnl 108, ALP 246. Blood 4/2/2020 - NSF, WBC 7.1k, mild lymphopenia. Iron wnl 163, ALP 274.

characteristic: bloodwork

characteristic: collection date

text: No

text: USA

characteristic: country

text: coltridum 10per HPF, large chains of rods, diverse bac pop ++++, ~3 WBC per HPF

text: dolphin FMT sample SD105589

text: TRUE

text: SPA

text: No

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

text: Capelin Herring Eulachon Silver Mullet

text: Capelin Herring Eulachon Eulachon Silver Mullet

text: USA:CA:La Jolla

text: USA

text: Tursiops truncatus

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: SPA

text: pounds

text: Donor

text: Doing well with no current medical issues.

text: cetacean metagenome

characteristic: organism

text: One

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 3

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: male

text: Donor

characteristic: title

text: dolphin test

text: Donor

text: Donor


status: PUBLIC

tag: attribute

text: UCSDMI

text: public

text: TYH

text: not reported

text: Blood 6/25 WNL

text: Yes

text: USA

text: Colstridium ~1-5 per HPF, diverse bacteria, large paired rods , yellow pigment debris?

characteristic: cytology

characteristic: date

text: dolphin FMT sample SD105590

characteristic: description

text: TRUE

text: TYH

text: No

characteristic: duplicate

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

text: Capelin Herring Threadfin Squid

characteristic: fish

text: Capelin Herring Threadfin Squid

text: USA:CA:La Jolla

text: USA

characteristic: geographic location (country and/or sea)

text: Tursiops truncatus

characteristic: host scientific name

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: TYH

text: pounds

text: Donor

characteristic: latitude

characteristic: location

characteristic: longitude

text: Note- moved from 122 to NAB on 6/22/20. Full body ultrasound performed 4/22 and was NSF. Animal on Regumate currently. Previous meds: maropitant (1/4-2/14), Clavamox (4/24-5/7), omeprazole (1/28-2/4), ondansetron (1/24-2/14), tramadol (1/28-2/5)

characteristic: meds

text: cetacean metagenome

characteristic: pair

text: One

characteristic: phase

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 1

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: male

characteristic: sex

text: Donor

characteristic: status

text: dolphin test

text: Donor

text: Donor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MUU

text: not reported

text: Blood 6/22- WNL

characteristic: bloodwork

characteristic: collection date

text: No

text: USA

characteristic: country

text: Cocci++, rods + good mix lower population then pervious samples

text: dolphin FMT sample SD105608

text: TRUE

text: MUU

text: No

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

text: Capelin Herring Eulachon Threadfin Squid

text: Eulachon, Capelin, Herring, Threadfin Herring, Squid

text: USA:CA:La Jolla

text: USA

text: Tursiops truncatus

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: MUU

text: pounds

text: Donor

text: None currently. Previous meds: NPG eye drops (9/1/2019-5/12/2020), tobramycin eye drops (12/6/19-3/17/20), omeprazole (2/10/2020-2/25/20), sucralfate (2/11-3/16/20)

text: cetacean metagenome

characteristic: organism

text: One

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 2

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: female

text: Donor

text: dolphin test

characteristic: title

text: Donor

text: Donor


text: UCSDMI

text: public

text: TYH

text: not reported

text: Blood 6/25 WNL

text: Yes

text: USA

text: Sparse bacteria cocci, fat droplets+, rare WBC

characteristic: cytology

characteristic: date

text: dolphin FMT sample SD105721

characteristic: description

text: TRUE

text: TYH

text: No

characteristic: duplicate

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

text: Capelin Herring Threadfin Squid

characteristic: fish

text: Capelin Herring Threadfin Squid

text: USA:CA:La Jolla

text: USA

characteristic: geographic location (country and/or sea)

text: Tursiops truncatus

characteristic: host scientific name

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: TYH

text: pounds

text: Donor

characteristic: latitude

characteristic: location

characteristic: longitude

characteristic: meds

text: cetacean metagenome

characteristic: pair

text: One

characteristic: phase

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 2

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: male

characteristic: sex

text: Donor

text: dolphin test

text: Donor

text: Donor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MUU

text: not reported

text: Blood 6/22- WNL

characteristic: bloodwork

characteristic: collection date

text: No

text: USA

characteristic: country

text: dolphin FMT sample SD105728

text: TRUE

text: MUU

text: No

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

text: USA:CA:La Jolla

text: USA

text: Tursiops truncatus

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: MUU

text: pounds

text: Donor

text: cetacean metagenome

characteristic: organism

text: One

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 3

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: female

text: Donor

characteristic: status

text: dolphin test

text: Donor

text: Donor


text: UCSDMI

text: public

text: AUS

text: not reported

text: Blood 1/2/2020- WBC 5.9k, normal differential, PCV 40%, stable ALP (390) and iron (184)

text: Yes

text: USA

text: Mucous strains, epi ++, low but dierse bacteria pop

characteristic: cytology

characteristic: date

text: dolphin FMT sample SD105730

characteristic: description

text: TRUE

text: AUS

text: No

characteristic: duplicate

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

characteristic: fish

text: Capelin Herring Eulachon Eulachon Threadfin Squid

text: USA:CA:La Jolla

text: USA

characteristic: geographic location (country and/or sea)

text: Tursiops truncatus

characteristic: host scientific name

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: AUS

text: pounds

text: Donor

characteristic: latitude

characteristic: location

characteristic: longitude

text: none currently. Previous meds: ciprofloxacin eye drops (6/26-7/15/20), NPG eye drops (6/8-7/15/20), tacrolimus eye drops (7/1-8/26/20), ketolorac eye drops (6/8 - 6/26/20), tramadol (5/15-7/15/20)

characteristic: meds

text: cetacean metagenome

characteristic: pair

text: One

characteristic: phase

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 3

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: male

text: Donor

characteristic: title

text: dolphin test

text: Donor

text: Donor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COH

text: not reported

text: Blood 4/22/2020 - mild mature neutrophilia (WBC 12.2, 9k neutrophils and 2% bands); normocytic, normochromic anemia PCV 32%.

characteristic: bloodwork

characteristic: collection date

text: No

text: USA

characteristic: country

text: Good diverse Bac population ++, rare fish spine and rare epi

text: dolphin FMT sample SD105731

text: TRUE

text: COH

text: No

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

text: USA:CA:La Jolla

text: USA

text: Tursiops truncatus

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: COH

text: pounds

text: Recipient

text: 302N/ NAB

text: altrenogest (1/31/2020 - present). Previous meds: maropitant (1/4-2/14), Clavamox (4/24-5/7), omeprazole (1/28-2/4), ondansetron (1/24-2/14), tramadol (1/28-2/5).

text: cetacean metagenome

characteristic: organism

text: One

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 3

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: female

characteristic: sex

text: Recipient

text: dolphin test

text: Recipient

text: Recipient


text: UCSDMI

text: public

text: TYH

text: not reported

text: Blood 6/25 WNL

text: Yes

text: USA

text: Small cocci, fish spines, WNL

characteristic: cytology

characteristic: date

text: dolphin FMT sample SD105889

characteristic: description

text: TRUE

text: TYH

text: No

characteristic: duplicate

characteristic: elevation

text: Host-associated

text: Host-associated (saline)

text: Animal (saline)

text: Animal distal gut (saline)

text: urban biome

text: research facility

text: fecal material

text: host-associated

text: Clinical Test

text: Capelin Herring Threadfin Squid

characteristic: fish

text: Capelin Herring Threadfin Squid

text: USA:CA:La Jolla

text: USA

characteristic: geographic location (country and/or sea)

text: Tursiops truncatus

characteristic: host scientific name

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: bottle-nosed dolphin

text: adult

text: TYH

text: pounds

text: Donor

characteristic: latitude

characteristic: location

characteristic: longitude

characteristic: meds

text: cetacean metagenome

characteristic: pair

text: One

characteristic: phase

text: UCSD

text: FALSE

text: dolphin fecal material

text: Baseline 3

text: Baseline

text: dolphin fecal material

text: cetacean metagenome

text: male

text: Donor

characteristic: status

text: dolphin test

text: Donor

text: Donor


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Portugal

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: CENTER NAME

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: not provided

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN11859/2022

text: other


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: public

text: SIB

text: GHOL, CH-1260 Nyon, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN18055/2023

characteristic: isolate

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17195/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN12972/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN13086/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN13087/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14225/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN13092/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN13103/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: HIB, CH-1530 Payerne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN11861/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17194/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14230/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14226/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN12973/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14229/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN12968/2022

text: active surveillance not initiated by an outbreak


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN13088/2022

characteristic: isolate

characteristic: organism

text: other

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14232/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14233/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN12966/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14228/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN11860/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN13102/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14231/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Hôpital Cantonal de Fribourg - HFR, CH-1752 Villars-sur-Glâne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN13090/2022

text: other


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN13091/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN17788/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN12967/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN17190/2023

characteristic: isolate

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14234/2022


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN14227/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN14235/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:International Livestock Research Institute

characteristic: Submitter Id

text: Directorate of Veterinary Services, PO Box 00100-34188, Kabete, Nairobi, Kenya

text: Jacqueline Kasiiti Lichoti

text: African swine fever virus of p72 genotype IX from a 2013 outbreak in Kiambu county, Kenya

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Central Kenya, Kiambu county

text: domestic

characteristic: host behaviour

text: domestic pig

text: domestic:free-range farm

characteristic: host habitat

text: diseased

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: missing: not collected

text: kidney tissue

characteristic: isolation source host-associated

text: post-mortem outbreak sample from the field

characteristic: isolation source non-host-associated

text: porcine macrophages, 1 passage

text: African swine fever virus

text: active surveillance in response to outbreak

text: African swine fever virus

text: p72 genotype IX

characteristic: serotype (required for a seropositive sample)

text: ASFV isolate (genotype IX) from Kenya, 2013

text: ken13/kiambu.2, p36/13

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: International Livestock Research Institute, PO Box 30709-00100, Nairobi, Kenya

characteristic: collecting institution

characteristic: collection date

text: Cynthia Kavulani Onzere

characteristic: collector name

text: African swine fever virus of p72 genotype IX from a 2013 longitudinal sampling in Busia district, Uganda

text: Uganda

text: Busia district, Alupe

characteristic: geographic location (region and locality)

text: domestic

text: domestic pig

characteristic: host common name

text: domestic:free-range farm

text: healthy

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: missing: not collected

characteristic: host subject id

characteristic: isolate

text: spleen tissue

text: post-mortem longitudinal sample

text: porcine macrophages, 1 passage

text: African swine fever virus

characteristic: organism

characteristic: sample capture status

text: African swine fever virus

text: p72 genotype IX

text: ASFV isolate (genotype IX) from Uganda, 2013

characteristic: title

text: ug13/alupe.1, Uganda 231


characteristic: ENA-CHECKLIST

characteristic: External Id

text: International Livestock Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cynthia Kavulani Onzere

text: African swine fever virus of p72 genotype IX from a 2013 active surveillance effort in Busia county, Kenya (slaughter slab sample)

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Western Kenya, Busia county, Amukura Central subcounty, Odukin

text: domestic

characteristic: host behaviour

text: domestic pig

text: other

characteristic: host habitat

text: not provided

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: missing: not collected

text: lung tissue

characteristic: isolation source host-associated

text: slaughter slab sample

characteristic: isolation source non-host-associated

text: porcine macrophages, 1 passage

text: African swine fever virus

text: African swine fever virus

text: p72 genotype IX

characteristic: serotype (required for a seropositive sample)

text: ken13/busia.8, Odukin 1

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collecting institution

characteristic: collection date

text: Cynthia Kavulani Onzere

characteristic: collector name

text: African swine fever virus of p72 genotype IX from a 2013 outbreak in Busia county, Kenya (wildtype virus)

text: Kenya

text: Western Kenya, Busia county, Busia-Teso boundary

characteristic: geographic location (region and locality)

text: domestic

text: domestic pig

characteristic: host common name

text: domestic:free-range farm

text: healthy

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: missing: not collected

characteristic: host subject id

characteristic: isolate

text: spleen tissue

text: porcine macrophages, 1 passage

text: African swine fever virus

characteristic: organism

characteristic: sample capture status

text: African swine fever virus

text: p72 genotype IX

characteristic: title

text: ken13/busia.3, Busia-Teso 1033 wildtype


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cynthia Kavulani Onzere

text: African swine fever virus of p72 genotype IX from a 2013 outbreak in Busia county, Kenya (WSL-adapted virus)

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: domestic

characteristic: host behaviour

text: domestic pig

text: domestic:free-range farm

characteristic: host habitat

text: healthy

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: missing: not collected

text: spleen tissue

characteristic: isolation source host-associated

characteristic: isolation source non-host-associated

text: wild boar lung cells (WSL), 5 passages

text: African swine fever virus

text: African swine fever virus

text: p72 genotype IX

characteristic: serotype (required for a seropositive sample)

text: WSL-adapted ASFV isolate (genotype IX) from Kenya, 2013

text: ken13/busia.3, Busia-Teso 1033 WSL

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collecting institution

characteristic: collection date

text: Cynthia Kavulani Onzere

characteristic: collector name

text: African swine fever virus of p72 genotype IX from a 2013 outbreak in Siaya county, Kenya

text: Kenya

text: Western Kenya, Siaya county, Nyadorera

characteristic: geographic location (region and locality)

text: domestic

text: domestic pig

characteristic: host common name

text: domestic:free-range farm

text: diseased

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: missing: not collected

characteristic: host subject id

characteristic: isolate

text: spleen tissue

text: porcine macrophages, 1 passage

text: African swine fever virus

characteristic: organism

characteristic: sample capture status

text: African swine fever virus

text: p72 genotype IX

characteristic: title

text: Nyadorera 1


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cynthia Kavulani Onzere

text: African swine fever virus of p72 genotype IX from a 2012 cross-sectional sampling in Siaya county, Kenya

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Western Kenya, Busia county, Matayos

text: domestic

characteristic: host behaviour

text: domestic pig

text: domestic:free-range farm

characteristic: host habitat

text: healthy

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: missing: not collected

text: spleen tissue

characteristic: isolation source host-associated

text: cross-sectional sample from field survey

characteristic: isolation source non-host-associated

text: porcine macrophages, 1 passage

text: African swine fever virus

text: active surveillance not initiated by an outbreak

text: African swine fever virus

text: p72 genotype IX

characteristic: serotype (required for a seropositive sample)

text: ASFV isolate (genotype IX) from Kenya, 2012

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Directorate of Veterinary Services, PO Box 00100-34188, Kabete, Nairobi, Kenya

characteristic: collecting institution

characteristic: collection date

text: Jacqueline Kasiiti Lichoti

characteristic: collector name

text: African swine fever virus of p72 genotype IX from a 2013 outbreak in Nakuru county, Kenya

text: Kenya

text: Rift Valley, Nakuru county, Rongai

characteristic: geographic location (region and locality)

text: domestic

text: domestic pig

characteristic: host common name

text: domestic:free-range farm

text: diseased

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: missing: not collected

characteristic: host subject id

characteristic: isolate

text: kidney tissue

text: post-mortem outbreak sample from the field

text: porcine macrophages, 1 passage

text: African swine fever virus

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: African swine fever virus

text: p72 genotype IX

characteristic: title

text: ken13/nakuru.1, Rongai 1


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jacqueline Kasiiti Lichoti

text: African swine fever virus of p72 genotype IX from a 2013 suspected outbreak in Nairobi county, Kenya

characteristic: description

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Nairobi county, Karen

text: domestic

characteristic: host behaviour

text: domestic pig

text: domestic:free-range farm

characteristic: host habitat

text: diseased

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: missing: not collected

text: spleen tissue

characteristic: isolation source host-associated

text: post-mortem suspected outbreak sample from the field

characteristic: isolation source non-host-associated

text: porcine macrophages, 1 passage

text: African swine fever virus

text: African swine fever virus

text: p72 genotype IX

characteristic: serotype (required for a seropositive sample)

text: ASFV isolate (genotype IX) from Kenya, 2013

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University of Edinburgh

text: Lisa Hoopes

characteristic: collection date

text: lesser devil ray

characteristic: common name

text: Mobula hypostoma heart sample

text: USA

text: Mobula hypostoma

characteristic: organism

text: HEART

text: Mobula hypostoma

text: Mobula hypostoma heart sample

characteristic: title


characteristic: External Id

text: University of Edinburgh

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma gonad sample

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Mobula hypostoma

text: GONAD

text: Mobula hypostoma

text: Mobula hypostoma gonad sample


text: University of Edinburgh

text: public

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma spleen sample

text: USA

text: Mobula hypostoma

text: SPLEEN

text: Mobula hypostoma

text: Mobula hypostoma spleen sample


text: University of Edinburgh

text: public

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma kidney sample

text: USA

text: Mobula hypostoma

text: KIDNEY

text: Mobula hypostoma

text: Mobula hypostoma kidney sample


text: University of Edinburgh

text: public

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma liver sample

text: USA

text: Mobula hypostoma

text: LIVER

text: Mobula hypostoma

text: Mobula hypostoma liver sample


text: University of Edinburgh

text: public

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma muscle sample

text: USA

text: Mobula hypostoma

text: MUSCLE

text: Mobula hypostoma

text: Mobula hypostoma muscle sample


text: University of Edinburgh

text: public

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma brain sample

text: USA

text: Mobula hypostoma

text: BRAIN

text: Mobula hypostoma

text: Mobula hypostoma brain sample


text: University of Edinburgh

text: public

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma intestine sample

text: USA

text: Mobula hypostoma

text: INTESTINE

text: Mobula hypostoma

text: Mobula hypostoma intestine sample


text: University of Edinburgh

text: public

text: Lisa Hoopes

text: lesser devil ray

text: Mobula hypostoma gill sample

text: USA

text: Mobula hypostoma

text: Mobula hypostoma

text: Mobula hypostoma gill sample


text: University of Edimburgh

text: public

tag: Namespace:University of Edimburgh

text: CNAG-CRG

characteristic: broker name

text: Kim Bassos-Hull

text: Mote Marine Laboratory

characteristic: collecting institution

text: lesser devil ray

text: Atlantic Ocean

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Navarre

characteristic: geographic location (region and locality)

text: Coastal

characteristic: habitat

text: juvenile

characteristic: lifestage

text: Mobula hypostoma

text: BLOOD

characteristic: organism part

characteristic: original collection date

text: Mobula hypostoma

text: MALE

characteristic: sex

text: Mobula hypostoma blood sample

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Dublin

unit: years

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00104269/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/KE-NVRL-GIRL00104474/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00103893/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/D-NVRL-GIRL00103894/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Donegal

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/DL-NVRL-GIRL00104198/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/G-NVRL-GIRL00104263/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00104796/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Mayo

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/MO-NVRL-GIRL00104547/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Mayo

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/MO-NVRL-GIRL00104548/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Mayo

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/MO-NVRL-GIRL00104549/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Mayo

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/MO-NVRL-GIRL00104551/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/D-NVRL-GIRL00105178/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00105180/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/D-NVRL-GIRL00104994/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Limerick

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/LK-NVRL-GIRL00104929/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

text: hCoV-19/Ireland/KE-NVRL-GIRL00105573/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Clare

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-GIRL00105264/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/WX-NVRL-GIRL00105328/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00105600/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/D-NVRL-GIRL00105660/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00105744/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/D-NVRL-GIRL00105745/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00105746/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/D-NVRL-GIRL00105968/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00105617/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/D-NVRL-GIRL00105626/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Meath

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-GIRL00104706/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/MH-NVRL-GIRL00104707/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Meath

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-GIRL00104708/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

text: hCoV-19/Ireland/MH-NVRL-GIRL00104709/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00102442/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/D-NVRL-GIRL00102556/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00102589/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/KE-NVRL-GIRL00102673/2023


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-GIRL00103403/2023

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: hCoV-19/Ireland/G-NVRL-GIRL00103504/2023


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Regional Virus Laboratory, Belfast Health and Social Care Trust; and: Genomics Core Technology Unit, Queens University Belfast.

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regional Virus Laboratory, Belfast Health and Social Care Trust; and: Genomics Core Technology Unit, Queens University Belfast.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: receipt date

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: Johannes Kepler University Linz

text: public

tag: Namespace:Johannes Kepler University Linz

text: human

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S sequences (V3-V4) from vaginal swab

characteristic: description

text: cotton swab

characteristic: environmental medium

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: vagina

characteristic: local environmental context

text: vaginal metagenome

text: TransMicrobiome

characteristic: project name

text: vaginal metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hannover Medical School

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Hannover Medical School

text: mouse

text: Germany

text: metagenome

characteristic: organism

text: metagenome


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: GAL.ALB.01c_RegioDiv.17940.11.08.111.E04

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: Submitter Id

text: Anne Schacherer

text: Germany

text: Kananohe 4

characteristic: geographic location (region and locality)

text: collected in the field

characteristic: isolation and growth condition

text: Galium album

text: adult

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Galium album

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

text: public

text: GAL.ALB.01c_RegioDiv.17962.11.08.111.F04

text: Anne Schacherer

characteristic: collection date

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Eltze

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GAL.ALB.01c_RegioDiv.17980.11.08.111.D04

text: Anne Schacherer

text: Germany

text: Kananohe 1

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: GAL.ALB.01c_RegioDiv.17993.11.08.111.G04

characteristic: Submitter Id

text: Anne Schacherer

text: Germany

text: Kananohe 2

characteristic: geographic location (region and locality)

text: collected in the field

characteristic: isolation and growth condition

text: Galium album

characteristic: organism

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-FIRST-PUBLIC

text: public

text: GAL.ALB.01c_RegioDiv.18043.11.08.111.B05

text: Anne Schacherer

characteristic: collection date

text: Germany

text: Langenhagen 3

text: collected in the field

text: Galium album

text: adult

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Galium album

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: GAL.ALB.01c_RegioDiv.18053.11.08.111.A05

text: Anne Schacherer

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kugelfangtrift

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GAL.ALB.01d_RegioDiv.18113.11.08.111.G05

text: Anne Schacherer

text: Germany

text: H�sseringer Heide

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-FIRST-PUBLIC

text: public

text: GAL.ALB.01c_RegioDiv.19199.11.08.111.G11

characteristic: Submitter Id

text: Jan-Hinnerk Schwarz

characteristic: collection date

text: Germany

text: Dalldorf - GF 3

characteristic: geographic location (region and locality)

text: collected in the field

characteristic: isolation and growth condition

text: Galium verum

characteristic: organism

text: adult

text: soil

text: leaf

text: Galium verum


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: GAL.ALB.01d_RegioDiv.19277.11.08.111.G12

text: Jan-Hinnerk Schwarz

text: Germany

text: collected in the field

text: Galium album

text: adult

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Galium album

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: GAL.ALB.01d_RegioDiv.19701.11.08.111.F09

text: Jan-Hinnerk Schwarz

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: T�P Bergen - Schie�bahn 12

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GAL.ALB.02c_RegioDiv.16908.11.08.111.G08

characteristic: Submitter Id

text: Barbara Bouillon

text: Germany

text: Rheindeich Niederkassel-L�lsdorf

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: GAL.ALB.02c_RegioDiv.17130.11.08.111.E06

text: Ren� Mause

characteristic: collection date

text: Germany

text: K�ln-Langel

characteristic: geographic location (region and locality)

text: collected in the field

characteristic: isolation and growth condition

text: Galium album

characteristic: organism

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: GAL.ALB.02c_RegioDiv.17144.11.08.111.F06

text: Ren� Mause

text: Germany

text: Bonn-Schwarzrheindorf

text: collected in the field

text: Galium album

text: adult

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Galium album

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: GAL.ALB.02c_RegioDiv.17150.11.08.111.A06

text: Ren� Mause

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Stockheim

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GAL.ALB.02c_RegioDiv.17251.11.08.111.H06

characteristic: Submitter Id

text: Ren� Mause

text: Germany

text: NSG Drover Heide

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: GAL.VER.03b_RegioDiv.19190.11.08.111.A11

text: Jan-Hinnerk Schwarz

characteristic: collection date

text: Germany

text: Poel - Koppelbarg - HWI 12

characteristic: geographic location (region and locality)

text: collected in the field

characteristic: isolation and growth condition

text: Galium verum

characteristic: organism

text: adult

text: soil

text: leaf

text: Galium verum


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: GAL.ALB.03c_RegioDiv.19699.11.08.111.H09

text: Karsten Kindermann

text: Germany

text: Wildfang

text: collected in the field

text: Galium album

text: adult

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Galium album

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

text: public

text: GAL.MOL.03b_RegioDiv.19739.11.08.111.E09

text: Malin Klumpp

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Wangelkow - sandiger Feldweg - 12

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GAL.ALB.04c_RegioDiv.17096.11.08.111.A09

characteristic: Submitter Id

text: Guido Warthemann

text: Germany

text: Jessen-Weinberg

text: collected in the field

text: Galium album

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: GAL.ALB.04d_RegioDiv.17555.11.08.111.F07

text: Markus Zaplata und Team

characteristic: collection date

text: Germany

text: Cottbus-Branitz

characteristic: geographic location (region and locality)

text: collected in the field

characteristic: isolation and growth condition

text: Galium album

characteristic: organism

text: adult

text: soil

text: leaf

text: Galium album


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: GAL.ALB.04d_RegioDiv.17582.11.08.111.E07

text: Markus Zaplata und Team

text: Germany

text: Schlaubewiese

text: collected in the field

text: Galium album

text: adult

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Galium album

characteristic: title