characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Biotechnology, Institute of Biochemistry, Biotechnology and Bioinformatics, The Islamia University of Bahawalpur.

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Protocols: Samples were collected from rhizosphere of wheat plant Seher-2006. The plant was in booting stage when the rhizospheric bacteria were isolated. Rhizospheric bacteria were isolated from 1 g soil tightly adhering to the root by serial dilution plating on Luria–Bertani (LB) agar plates. Endophytic bacteria was isolated by serial dilution plating of sterilized crushed root samples on LB agar plates. The plates were incubated at 28 ± 2°C till the appearance of bacterial colonies. Individual colonies were picked and streaked on LB plates for further purification. RNA was extracted using kit method - GeneJET Plant RNA Purification Kit, Catalog number: K0801 1) Isolate the Total RNA from Sample of interest (Cell or Tissue). 2) Eliminate DNA contamination using DNase. 3) For mRNA with poly-A tail, mRNA purification kit was used; for non-coding RNAs, such as lincRNA was used. 4) Randomly fragment purified RNA for short read sequencing. 5) Reverse transcribe fragmented RNA into cDNA. 6) Ligate adapters onto both ends of the cDNA fragments. 7) After amplifying fragments using PCR, select fragments with insert sizes between 200-400 bp. For paired-end sequencing, both ends of the cDNA is sequenced by the read length.

characteristic: description

text: Chak 13 BC, Bahawalpur, Pakistan

characteristic: geographic location

text: not collected

characteristic: geographic location (country and/or sea)

text: 28 degree Celsius

characteristic: growth condition

text: not applicable

characteristic: isolate

text: mixed sample

text: mixed sample

text: bacteria from rhizosphere of Seher-2006 wheat plant

characteristic: sampling site

text: mixed sample

text: HBCD-sjtu

characteristic: strain


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Institute of Biotechnology, Life Science Centre, Vilnius University

text: K-562 cell line

characteristic: collection date

text: human

characteristic: common name

text: K-562 cells prepared by inDrops-1

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: RT enzyme: SuperScriptIII; RT: 50C; Digestion: HinFI and ExoI; SPRI: 1.2X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 01


characteristic: ENA-CHECKLIST

text: Institute of Biotechnology, Life Science Centre, Vilnius University

text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-1.1

text: USA

text: RT enzyme: SuperScriptIII; RT: 50C; Digestion: ExoI; SPRI: 1.2X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 02


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-1.2

text: USA

text: RT enzyme: SuperScriptIII; RT: 50C; Digestion: None; SPRI: 1.2X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 03


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-2 (IVT) without ExoI

text: USA

text: RT enzyme: Maxima H-; RT: 50C; Digestion: None; SPRI: 1.2X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-2 (IVT) without ExoI

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 04


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-2 (IVT)

text: USA

text: RT enzyme: Maxima H-; RT: 50C; Digestion: ExoI; SPRI: 1.2X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-2 (IVT)

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 05


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-1.1 with RT at 42C

text: USA

text: RT enzyme: SuperScriptIII; RT: 42C; Digestion: ExoI; SPRI: 0.8X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-1.1 with RT at 42C

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 06


text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-1.1 with RT at 50C

text: USA

text: RT enzyme: SuperScriptIII; RT: 50C; Digestion: ExoI; SPRI: 0.8X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-1.1 with RT at 50C

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 07

characteristic: title


text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-2 (IVT) with RT at 42C

text: USA

text: RT enzyme: Maxima H-; RT: 42C; Digestion: ExoI; SPRI: 0.8X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-2 (IVT) with RT at 42C

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 08


text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-2 (IVT) with RT at 50C

text: not provided

text: RT enzyme: Maxima H-; RT: 50C; Digestion: ExoI; SPRI: 0.8X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-2 (IVT) with RT at 50C

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 09


text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-1.1 with SSIV RT at 42C

text: not provided

text: RT enzyme: SuperScriptIV; RT: 42C; Digestion: ExoI; SPRI: 0.8X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-1.1 with SSIV RT at 42C

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 10


text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-1.1 with SSIV RT at 50C

text: not provided

text: RT enzyme: SuperScriptIV; RT: 50C; Digestion: ExoI; SPRI: 0.8X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-1.1 with SSIV RT at 50C

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 11


text: Institute of Biotechnology, Life Science Centre, Vilnius University

text: public

text: K-562 cell line

text: human

text: K-562 cells prepared by inDrops-2 (TS)

text: not provided

text: RT enzyme: Maxima H-; RT: 50C; Digestion: None; SPRI: 0.8X; Type: TS; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-2 (TS)

text: Homo sapiens

text: originated from bone marrow

text: K-562 scRNA-seq library 12


text: public

text: PBMC cells

text: human

text: PBMCs prepared by inDrops-1

text: not provided

text: RT enzyme: SuperScriptIII; RT: 50C; Digestion: HinFI and ExoI; SPRI: 0.8X; Type: IVT; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: Homo sapiens

text: peripheral blood

text: PBMC scRNA-seq library 01


text: public

text: PBMC cells

text: human

text: PBMCs prepared by inDrops-2 (IVT)

text: not provided

text: Homo sapiens

text: inDrops-2 (IVT)

text: Homo sapiens

text: peripheral blood

text: PBMC scRNA-seq library 02


text: public

text: PBMC cells

text: human

text: PBMCs prepared by inDrops-2 (TS)

text: not provided

text: RT enzyme: Maxima H-; RT: 42C; Digestion: None; SPRI: 0.8X; Type: TS; Beads: v2; Preservation: Fresh

text: Homo sapiens

text: inDrops-2 (TS)

text: Homo sapiens

text: peripheral blood

text: PBMC scRNA-seq library 03


text: public

text: PBMC cells

text: human

text: PBMCs (methanol-fixed) prepared by inDrops-2 (TS)

text: not provided

text: RT enzyme: Maxima H-; RT: 42C; Digestion: None; SPRI: 0.8X; Type: TS; Beads: v2; Preservation: MeOH-fixed

text: Homo sapiens

text: inDrops-2 (TS)

text: Homo sapiens

text: peripheral blood

text: PBMC scRNA-seq library 04


text: public

text: PBMC cells

text: human

text: PBMCs prepared by 10X Genomics (v3)

text: not provided

text: RT enzyme: 10x (v3); RT: 10x (v3); Digestion: 10x (v3); SPRI: 10x (v3); Type: TS; Beads: v3; Preservation: Fresh

text: Homo sapiens

text: 10x (v3)

text: Homo sapiens

text: peripheral blood

text: PBMC scRNA-seq library 05


text: public

text: PBMC cells

text: human

text: PBMCs (methanol-fixed) prepared by 10X Genomics (v3)

text: not provided

text: RT enzyme: 10x (v3); RT: 10x (v3); Digestion: 10x (v3); SPRI: 10x (v3); Type: TS; Beads: v3; Preservation: MeOH-fixed

text: Homo sapiens

text: 10x (v3)

text: Homo sapiens

text: peripheral blood

text: PBMC scRNA-seq library 06


text: public

text: primary LUAD cells

text: human

text: LUAD cells prepared by inDrops-1

text: USA

text: Homo sapiens

text: Homo sapiens

text: lung adenocarcinoma (LUAD)

text: LUAD scRNA-seq library 01


text: public

text: primary LUAD cells

text: human

text: LUAD cells prepared by inDrops-2 (IVT)

text: USA

text: Homo sapiens

text: inDrops-2 (IVT)

text: Homo sapiens

text: lung adenocarcinoma (LUAD)

text: LUAD scRNA-seq library 02


text: public

text: primary LUAD cells

text: human

text: LUAD cells prepared by inDrops-2 (TS)

text: USA

text: RT enzyme: Maxima H-; RT: 42C; Digestion: None; SPRI: 0.8X; Type: TS; Beads: v1; Preservation: Fresh

text: Homo sapiens

text: inDrops-2 (TS)

text: Homo sapiens

text: lung adenocarcinoma (LUAD)

text: LUAD scRNA-seq library 03


text: public

text: primary CD34 cells

text: human

text: CD34 cells prepared by inDrops-2 (TS) cell aliquote 1

text: not provided

text: Homo sapiens

text: inDrops-2 (TS)

text: Homo sapiens

text: bone marrow

text: CD34 scRNA-seq library 01


text: public

text: primary CD34 cells

text: human

text: CD34 cells prepared by inDrops-2 (TS) cell aliquote 2

text: not provided

text: Homo sapiens

text: inDrops-2 (TS)

text: Homo sapiens

text: bone marrow

text: CD34 scRNA-seq library 02


text: public

text: primary CD34 cells

text: human

text: CD34 cells (methanol-fixed) prepared by inDrops-2 (TS)

text: not provided

text: Homo sapiens

text: inDrops-2 (TS)

text: Homo sapiens

text: bone marrow

text: CD34 scRNA-seq library 03


text: public

text: primary CD34 cells

text: human

text: CD34 cells prepared by 10X Genomics (v3)

text: not provided

text: Homo sapiens

text: 10x (v3)

text: Homo sapiens

text: bone marrow

text: CD34 scRNA-seq library 04


text: public

text: primary CD34 cells

text: human

text: CD34 cells (methanol-fixed) prepared by 10X Genomics (v3)

text: not provided

text: Homo sapiens

text: 10x (v3)

text: Homo sapiens

text: bone marrow

text: CD34 scRNA-seq library 05


text: public

text: KP murine cell line

text: eastern European house mouse

text: KP murine cells prepared by inDrops-2 (TS)

text: USA

text: Mus musculus musculus

text: inDrops-2 (TS)

text: Mus musculus musculus

text: originated from lung adenocarcinoma

text: KP scRNA-seq library 01


text: public

tag: Namespace:Fundacion Instituto de Investigacion Fundacion Jimenez Diaz

text: Fundación Instituto de Investigación Sanitaria Fundación Jiménez Díaz, Madrid, Spain

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: sequences obtained from SARS-CoV-2 in patient Pt459

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host common name

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fundacion Instituto de Investigacion Fundacion Jimenez Diaz

characteristic: INSDC center name

text: public

characteristic: collection date

text: Celia Perales

text: sequences obtained from SARS-CoV-2 in patient Pt460

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Homo sapiens

text: diseased

text: homo sapiens

text: female

characteristic: organism

text: drag and drop uploader tool


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Celia Perales

characteristic: collector name

text: sequences obtained from SARS-CoV-2 in patient Pt461

text: Spain

text: Madrid area

characteristic: geographic location (region and locality)

text: Homo sapiens

text: diseased

text: homo sapiens

text: female

text: drag and drop uploader tool

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Celia Perales

text: sequences obtained from SARS-CoV-2 in patient Pt462

text: Spain

text: Madrid area

text: Homo sapiens

characteristic: host common name

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status

text: drag and drop uploader tool


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Celia Perales

text: sequences obtained from SARS-CoV-2 in patient Pt463

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Madrid area

text: Homo sapiens

text: diseased

text: homo sapiens

text: male

characteristic: organism

text: drag and drop uploader tool


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UMJGU

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human-associated

characteristic: broad-scale environmental context

text: human

characteristic: common name

text: Fecal sample

text: feces

characteristic: environmental medium

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: gut

characteristic: local environmental context

text: Homo sapiens

text: PredictIBDTher

characteristic: project name

text: Homo sapiens

text: 16S amplicon sequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UPPSALA UNIVERSITY

characteristic: collection date

text: human

text: Hoedic

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Teviec

text: France

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: UPPSALA UNIVERSITY

text: public

text: human

text: Champigny

text: France

text: Homo sapiens

text: Homo sapiens


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: Extraction date

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

characteristic: Extraction method

text: Genoscope CEA

text: public

tag: Namespace:Genoscope CEA

text: missing: data agreement established pre-2023

characteristic: generation

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Philippe Potin

characteristic: identification by

text: Ascophyllum nodosum

text: diploid

characteristic: ploidy

characteristic: sample alias

text: DNA extracted from Ascophyllum nodosum strain Asc.nod1 for genome sequencing.

characteristic: sample description

text: Ascophyllum nodosum

characteristic: sequencing centre sample code

text: male

characteristic: sex

characteristic: strain

text: sperm

characteristic: tissue type

text: DNA extracted from Ascophyllum nodosum strain Asc.nod1.


text: DNA

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: geographic location (country and/or sea)

text: Philippe Potin

text: Ascophyllum nodosum

text: diploid

text: DNA extracted from Ascophyllum nodosum strain Asc.nod3 for genome sequencing.

text: Ascophyllum nodosum

text: male

text: sperm

text: DNA extracted from Ascophyllum nodosum strain Asc.nod3.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA sample code

text: RNAplus - 3 extractions pooled and cleaned-up with Qiagen RNeasy

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: RNA RIN value

characteristic: generation

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Philippe Potin

characteristic: identification by

text: Ascophyllum nodosum

characteristic: organism

text: diploid

characteristic: ploidy

characteristic: sample alias

text: RNA extracted from Ascophyllum nodosum strain Asc.nod4 for RNA-seq-based genome annotation.

characteristic: sample description

text: Ascophyllum nodosum

characteristic: sequencing centre sample code

text: male

characteristic: sex

characteristic: strain

text: receptacle and meristem

text: RNA extracted from Ascophyllum nodosum strain Asc.nod4.


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater plus antibiotics. Grown under 12:12h white light (10-30 mol m-2s-1 photon fluence rate) at 13C.

text: DNA

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Monoicous, derived from a field-isolated sporophyte. Publication: Peters, A.F. 1992 Journal of Phycology 28, 678-683. Sampled in January or February 1989.

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

text: Chile

characteristic: geographic location (country and/or sea)

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Chordaria linearis

text: haploid

text: DNA extracted from Chordaria linearis strain ClinC8C for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Cameron, Tierra del Fuego, Chile

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Chordaria linearis

text: monoicous

text: Morphology

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: DNA extracted from Chordaria linearis strain ClinC8C.

characteristic: title


text: 140 mm round Petri dish cultures in natural sea water implemented with 0.01% Provasoli enrichment plus antibiotic under 10h:14h light:dark (white fluorescent light of 10-30 mol m-2s-1 photon fluence rate)a t 13C. Before harvesting, individuals from each Petri dish were transplanted into freshly prepared culture medium in a new Petri dish and cryotubes for maintenance and further harvesting. Harvesting was carried out as follows: the medium from the Petri dish was discarded. All partheno-sporophytes were collected using a plastic squeegee, rapidly dried on clean absorbent paper, put in a 96 well plate containing a metal ball and frozen in liquid nitrogen. Samples were kept at -80C before DNA extraction. For extraction, tissues were lyophilized and crushed, using the metal ball, in a crusher. Genomic DNA was extracted using the MN Nucleospin Plant DNA kit.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep, elution in TE buffer

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

text: public

text: Akira F. Peters

text: gametophyte

characteristic: generation

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Chordaria linearis

characteristic: organism

text: haploid

characteristic: ploidy

characteristic: sample alias

characteristic: sample description

text: coastal

text: Pacific Ocean

text: Cameron, Tierra del Fuego, Chile

text: marine

text: Chordaria linearis

characteristic: sequencing centre sample code

text: monoicous

characteristic: sex

text: Morphology

characteristic: strain

text: whole thallus


text: Cultures in Provasoli-enriched seawater with half strength Provasoli micronutrients. Grown under 12:12h white light (10-30 mol m-2s-1 photon fluence rate) at 13C. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

text: Chile

characteristic: geographic location (country and/or sea)

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Chordaria linearis

text: haploid

text: RNA extracted from Chordaria linearis strain ClinC8C for RNA-seq-based genome annotation.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Cameron, Tierra del Fuego, Chile

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Chordaria linearis

text: monoicous

text: Morphology

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: RNA extracted from Chordaria linearis strain ClinC8C.

characteristic: title


text: 140 mm Petri dish cultures in Provasoli-enriched natural seawater. Grown under short days at 10C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

text: public

text: Akira F. Peters

text: gametophyte

characteristic: generation

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Chordaria linearis

characteristic: organism

text: haploid

characteristic: ploidy

characteristic: sample alias

characteristic: sample description

text: coastal

text: Pacific Ocean

text: Cameron, Tierra del Fuego, Chile

text: marine

text: Chordaria linearis

text: monoicous

characteristic: sex

text: Morphology

characteristic: strain

text: whole thallus


text: Three Petri dish cultures in Provasoli-enriched seawater plus antibiotics. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

text: Genoscope CEA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: This strain was originally thought to be Discosporangium mesarthrocarpum strain KU-2346 (Disco Hydra 04-07, Disco KU-1325) isolated by Dieter Mueller from a fishery net on Hydra island, Greece on he 28/10/2004 but Liliana Munoz showed that a portion of rbcL from the strain was 99% identical with that of Choristocarpus tenellus (KU-1152) and Delphine Scornet showed that the COX1 sequence of this strain is identical to that of KU-1152. The strain is therefore Choristocarpus and not Discosporangium as previously thought and probably identical to KU-1152.

characteristic: additional details

text: Dieter Muller

characteristic: collection date

text: nd

text: France

characteristic: geographic location (country and/or sea)

text: Akira Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Choristocarpus tenellus

text: DNA extracted from Choristocarpus tenellus strain KU-1152 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: French coast of Mediterranean Sea

characteristic: sampling sea

text: Villefrance-sur-mer, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Choristocarpus tenellus

characteristic: sequencing centre sample code

text: nd

text: whole thallus

characteristic: tissue type

text: DNA extracted from Choristocarpus tenellus strain KU-1152.

characteristic: title


text: No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

text: public

text: Dieter Muller

text: nd

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Choristocarpus tenellus

characteristic: organism

characteristic: sample alias

characteristic: sample description

text: coastal

text: French coast of Mediterranean Sea

text: Villefrance-sur-mer, France

text: marine

text: Choristocarpus tenellus

text: nd

characteristic: sex

characteristic: strain

text: whole thallus


text: 140 mm Petri dish culture in Provasoli-enriched seawater for 1.5 months.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: DNA_PHAEO201-1 (14/08/2019)

characteristic: DNA or RNA sample code

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Dieter Muller

characteristic: collection date

text: nd

text: France

characteristic: geographic location (country and/or sea)

text: Akira Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Choristocarpus tenellus

text: coastal

characteristic: sampling ecosystem

text: French coast of Mediterranean Sea

characteristic: sampling sea

text: Villefrance-sur-mer, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Choristocarpus tenellus

characteristic: sequencing centre sample code

text: nd

text: whole thallus

characteristic: tissue type

characteristic: title


text: Air-bubbled 10 L carboy culture in Provasoli-enriched seawater with double strength Provasoli micronutrients. Grown under 16:8h white light at 13C. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit with RLC buffer improved protocol

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

text: public

characteristic: RNA RIN value

text: Dieter Muller

text: nd

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Choristocarpus tenellus

characteristic: organism

characteristic: sample alias

text: RNA extracted from Choristocarpus tenellus strain KU-1152 for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

text: French coast of Mediterranean Sea

text: Villefrance-sur-mer, France

text: marine

text: Choristocarpus tenellus

text: nd

characteristic: sex

characteristic: strain

text: whole thallus

text: RNA extracted from Choristocarpus tenellus strain KU-1152.


text: Grown in Erlenmeyer flasks in K-enriched seawater medium at 21C under cool white LED lights with a daily 10:14 h light:dark cycle

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

text: WEHI

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CTAB

text: Genoscope CEA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Publication: Wetherbee, R., Jackson, C. J., Repetti, S. I., Clementson, L. A., Costa, J. F., van de Meene, A., Crawford, S. & Verbruggen, H. 2019. The golden paradox - a new heterokont lineage with chloroplasts surrounded by two membranes. Journal of Phycology 55:257-78.

characteristic: additional details

text: Richard Wetherbee

text: missing: data agreement established pre-2023

characteristic: collection date

text: ANACC

characteristic: geographic location (country and/or sea)

text: Richard Wetherbee

text: type strain of the species, it defines the taxon

characteristic: identification method

text: Chrysoparadoxa australica

text: DNA extracted from Chrysoparadoxa australica strain CS-1217 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Bittangabee Bay, New South Wales, Australia

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Chrysoparadoxa australica

text: nd

text: cells

characteristic: tissue type

text: DNA extracted from Chrysoparadoxa australica strain CS-1217.

characteristic: title


characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

text: Novogene

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Pure-link Plant RNA Reagent (Thermo Fisher Scientific)

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

text: public

text: Richard Wetherbee

text: ANACC

characteristic: generation

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Richard Wetherbee

characteristic: identification by

text: Chrysoparadoxa australica

characteristic: organism

characteristic: sample alias

text: RNA extracted from Chrysoparadoxa australica strain CS-1217 for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

text: Pacific Ocean

text: marine

text: Chrysoparadoxa australica

text: nd

characteristic: sex

characteristic: strain

text: cells

text: RNA extracted from Chrysoparadoxa australica strain CS-1217.


text: Petri dish and 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics. Grown under long day white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-FIRST-PUBLIC

characteristic: Extraction date

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Publication: Yang, E.C, Peters, A.F., Kawai, H., Stern, R., Hanyuda, T., Barbara, I., Prud homme van Reine W.F. & Kupper, F.C. 2014 J. Phycol. 50, 149-161. doi: 10.1111/jpy.12148. Sampled in 1999.

characteristic: additional details

text: Frithjof Kupper>Akira F. Peters

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Frithjof Kupper>Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Desmarestia dudresnayi

text: haploid

characteristic: ploidy

text: DNA extracted from Desmarestia dudresnayi strain DdudBR16 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Baie de Morlaix, Brittany, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Desmarestia dudresnayi

characteristic: sequencing centre sample code

text: monoicous

text: whole thallus

characteristic: tissue type

text: DNA extracted from Desmarestia dudresnayi strain DdudBR16.

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Frithjof Kupper>Akira F. Peters

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Frithjof Kupper>Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Desmarestia dudresnayi

characteristic: organism

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Baie de Morlaix, Brittany, France

text: marine

text: Desmarestia dudresnayi

text: monoicous

characteristic: sex

characteristic: strain

text: whole thallus


text: Three Petri dish cultures in Provasoli-enriched seawater plus antibiotics. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. DmunM and DmunF are brother and sister. Publication: Peters & Muller 1986.

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

text: Canada

characteristic: geographic location (country and/or sea)

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Desmarestia herbacea

text: haploid

characteristic: ploidy

text: DNA extracted from Desmarestia herbacea strain Dmunm for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Bamfield, Vancouver I., British Columbia, Canada

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Desmarestia herbacea

characteristic: sequencing centre sample code

text: male

text: Dmunm

text: whole thallus

characteristic: tissue type

text: DNA extracted from Desmarestia herbacea strain Dmunm.

characteristic: title


text: Antibiotics added.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Akira F. Peters

text: gametophyte

characteristic: generation

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Desmarestia herbacea

characteristic: organism

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: Pacific Ocean

text: marine

text: Desmarestia herbacea

text: male

characteristic: sex

text: Dmunm

characteristic: strain

text: whole thallus


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. DmunF and DmunM are sister and brother. Publication: Peters & Muller 1986.

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

text: Canada

characteristic: geographic location (country and/or sea)

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Desmarestia herbacea

text: haploid

characteristic: ploidy

text: DNA extracted from Desmarestia herbacea strain Dmunf for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Desmarestia herbacea

characteristic: sequencing centre sample code

text: female

text: Dmunf

text: whole thallus

characteristic: tissue type

text: DNA extracted from Desmarestia herbacea strain Dmunf.

characteristic: title


text: Antibiotics added during the final 24h of culture.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: 16/01/2020 and 3/O6/2020

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Akira F. Peters

text: gametophyte

characteristic: generation

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Desmarestia herbacea

characteristic: organism

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: Pacific Ocean

text: marine

text: Desmarestia herbacea

text: female

characteristic: sex

text: Dmunf

characteristic: strain

text: whole thallus


text: 140 mm Petri dish cultures in Provasoli-enriched (0.01%) seawater plus antibiotics. Grown under 10:14h white light:dark (10-30 mol m-2s-1 photon fluence rate) at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: Extraction date

text: NucleoSpin Plant II ethanol precipitation

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

text: Canada

characteristic: geographic location (country and/or sea)

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Desmarestia herbacea

text: haploid

characteristic: ploidy

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Desmarestia herbacea

characteristic: sequencing centre sample code

text: male

text: Dmunm

text: whole thallus, mixed stages

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Akira F. Peters

text: gametophyte

characteristic: generation

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Desmarestia herbacea

characteristic: organism

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: Pacific Ocean

text: marine

text: Desmarestia herbacea

text: female

characteristic: sex

text: Dmunf

characteristic: strain

text: whole thallus, mixed stages


text: Air-bubbled 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients. Grown under 16:8h white light and at 13C. (5 ml of the standard antibiotic mix per 1 L medium throughout the whole cultivation process, with replenishment at every medium change)

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

text: OmniPrep

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Akira F. Peters

characteristic: collection date

text: gametophyte

text: Canada

characteristic: geographic location (country and/or sea)

text: Akira F. Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Desmarestia herbacea

text: haploid

characteristic: ploidy

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Desmarestia herbacea

text: male

text: Dmunm

text: whole thallus, mixed stages

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: protocol HiC Pasteur

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Akira F. Peters

text: gametophyte

characteristic: generation

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Desmarestia herbacea

characteristic: organism

text: haploid

characteristic: sample alias

text: DNA extracted from Desmarestia herbacea strain Dmunm for Hi-C analysis.

characteristic: sample description

text: coastal

text: Pacific Ocean

text: marine

text: Desmarestia herbacea

text: male

characteristic: sex

text: Dmunm

characteristic: strain

text: whole thallus, mixed stages


text: Air-bubbled 2 L flask culture in Provasoli-enriched seawater. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

text: OmniPrep

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. Sampled in 2007.

characteristic: additional details

text: Olivier De Clerc

text: missing: data agreement established pre-2023

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Olivier De Clerc

text: Morphology, genome sequenced

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: DNA extracted from Dictyota dichotoma strain ODC1387m for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Wimereux Marine Station, Wimereux, France

characteristic: sampling site

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

characteristic: sequencing centre sample code

text: male

text: morphology, genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: DNA extracted from Dictyota dichotoma strain ODC1387m.

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep - pool of 7 extractions

characteristic: Extraction method

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Olivier De Clerc

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Olivier De Clerc

characteristic: identification by

text: Morphology, genome sequenced

text: Dictyota dichotoma

characteristic: organism

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: marine

text: Dictyota dichotoma

text: male

characteristic: sex

characteristic: strain

text: whole thallus


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: gametophyte

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: DNA extracted from Dictyota dichotoma strain Dic.dic1 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: male

text: whole thallus

characteristic: tissue type

text: DNA extracted from Dictyota dichotoma strain Dic.dic1.

characteristic: title


text: 17-20 C in crystallising dishes (250 mL) at 60 umol photons m-2 s-1 (Lumilux, Cool White, Osram, Germany). Cultures were grown at 12:12 (L:D) in autoclaved natural seawater enriched with modified Provasoli (mPES) (West and McBride 1999). Mature, fertile individuals. Harvested 10-12 days after media refreshment. No antibiotics.

text: RNA

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: additional details

text: Olivier De Clerc

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Olivier De Clerc

characteristic: identification by

text: Morphology, genome sequenced

text: Dictyota dichotoma

characteristic: organism

text: haploid

characteristic: sample alias

text: RNA extracted from Dictyota dichotoma strain ODC1387m for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

text: English Channel

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

text: male

characteristic: sex

characteristic: sex determination method

characteristic: strain

text: whole thallus, fertile

text: RNA extracted from Dictyota dichotoma strain ODC1387m.


text: 18-20 C in crystallising dishes (250 mL) at 60 umol photons m-2 s-1 (Lumilux, Cool White, Osram, Germany). Cultures were grown at 12:12 (L:D) in autoclaved natural seawater enriched with modified Provasoli (mPES) (West and McBride 1999). Mature, fertile individuals. Harvested 10-12 days after media refreshment. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Olivier De Clerc

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Olivier De Clerc

text: Morphology, genome sequenced

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: male

text: whole thallus, fertile

characteristic: tissue type

characteristic: title


Fem rep1 KB07f VI  - f11

text: 19-20 C in crystallising dishes (250 mL) at 60 umol photons m-2 s-1 (Lumilux, Cool White, Osram, Germany). Cultures were grown at 12:12 (L:D) in autoclaved natural seawater enriched with modified Provasoli (mPES) (West and McBride 1999). Mature, fertile individuals. Harvested 10-12 days after media refreshment. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CTAB

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Fem rep1 KB07f VI - f11

text: Kenny Bogaert

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: haploid

text: Fem rep1 KB07f VI - f11

characteristic: sample alias

text: RNA extracted from Dictyota dichotoma strain KB07f VI for analysis of differential gene expression..

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: KB07f VI

characteristic: strain

text: whole thallus, fertile

text: RNA extracted from Dictyota dichotoma strain KB07f VI.


Fem rep2 KB07f VI - f20

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Fem rep2 KB07f VI - f20

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: Fem rep2 KB07f VI - f20

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: female

text: KB07f VI

text: whole thallus, fertile

characteristic: tissue type

characteristic: title


Fem rep3 KB07f VI  - f15

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CTAB

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Fem rep3 KB07f VI - f15

text: Kenny Bogaert

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: haploid

text: Fem rep3 KB07f VI - f15

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: KB07f VI

characteristic: strain

text: whole thallus, fertile


Fem reserv1 KB07f VI  - f15

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Fem reserv1 KB07f VI - f15

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: Fem reserv1 KB07f VI - f15

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: female

text: KB07f VI

text: whole thallus, fertile

characteristic: tissue type

characteristic: title


Fem reserv2 KB07f VI  - f9

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CTAB

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Fem reserv2 KB07f VI - f9

text: Kenny Bogaert

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: haploid

text: Fem reserv2 KB07f VI - f9

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: KB07f VI

characteristic: strain

text: whole thallus, fertile


Male rep1 KB07m VI  - m19

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Male rep1 KB07m VI - m19

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: Male rep1 KB07m VI - m19

text: RNA extracted from Dictyota dichotoma strain KB07m VI for analysis of differential gene expression..

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: male

text: KB07m VI

text: whole thallus, fertile

characteristic: tissue type

text: RNA extracted from Dictyota dichotoma strain KB07m VI.

characteristic: title


Male rep2 KB07m VI  - m21

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CTAB

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Male rep2 KB07m VI - m21

text: Kenny Bogaert

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: haploid

text: Male rep2 KB07m VI - m21

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: KB07m VI

characteristic: strain

text: whole thallus, fertile


Male rep3 KB07m VI  - m24

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Male rep3 KB07m VI - m24

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: Male rep3 KB07m VI - m24

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: male

text: KB07m VI

text: whole thallus, fertile

characteristic: tissue type

characteristic: title


Male reserv1 KB07m VI  - m14

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CTAB

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Male reserv1 KB07m VI - m14

text: Kenny Bogaert

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: haploid

text: Male reserv1 KB07m VI - m14

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: KB07m VI

characteristic: strain

text: whole thallus, fertile


Male reserv2 KB07m VI  - m11

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Male reserv2 KB07m VI - m11

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: Male reserv2 KB07m VI - m11

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: male

text: KB07m VI

text: whole thallus, fertile

characteristic: tissue type

characteristic: title


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Tissue was lyophilized and crushed using a mini-pestle for the extraction. Genomic DNA was extracted using the MN Nucleospin Plant DNA kit.

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Kenny Bogaert

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: haploid

characteristic: sample alias

text: DNA extracted from Dictyota dichotoma strain KB07f IV for genome sequencing.

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

text: female

characteristic: sex

text: KB07f IV

characteristic: strain

text: whole thallus

text: DNA extracted from Dictyota dichotoma strain KB07f IV.


characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: External Id

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Kenny Bogaert

text: missing: data agreement established pre-2023

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: female

text: KB07f IV

text: whole thallus

characteristic: tissue type

characteristic: title


text: Provasoli-enriched seawater

text: DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Omniprep

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Kenny Bogaert

text: gametophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: haploid

characteristic: sample alias

text: DNA extracted from Dictyota dichotoma strain KB07m VI for genome sequencing.

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

text: female

characteristic: sex

text: KB07m VI

characteristic: strain

text: whole thallus

text: DNA extracted from Dictyota dichotoma strain KB07m VI.


text: Air-bubbled 2 L flask culture in Provasoli-enriched seawater. Grown under 12:12h light at 20C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: External Id

characteristic: Extraction date

text: protocol HiC Pasteur

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. Sampled in 2007.

characteristic: additional details

text: Olivier De Clerc

characteristic: collection date

text: gametophyte

text: France

characteristic: geographic location (country and/or sea)

text: Olivier De Clerc

text: Morphology, genome sequenced

characteristic: identification method

text: Dictyota dichotoma

text: haploid

characteristic: ploidy

text: DNA extracted from Dictyota dichotoma strain ODC1387m for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Wimereux Marine Station, Wimereux, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: male

text: morphology, genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: DNA extracted from Dictyota dichotoma strain ODC1387m.

characteristic: title


Spor rep1 KB07sp VI - s11

text: 19-20 C in crystallising dishes (250 mL) at 60 umol photons m-2 s-1 (Lumilux, Cool White, Osram, Germany). Cultures were grown at 12:12 (L:D) in autoclaved natural seawater enriched with modified Provasoli (mPES) (West and McBride 1999). Mature, fertile individuals. Harvested 10-12 days after media refreshment. No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CTAB

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spor rep1 KB07sp VI - s11

text: Kenny Bogaert

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: diploid

text: Spor rep1 KB07sp VI - s11

characteristic: sample alias

text: RNA extracted from Dictyota dichotoma strain KB07sp VI for analysis of differential gene expression..

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

characteristic: sex

text: KB07sp VI

characteristic: strain

text: whole thallus, fertile

text: RNA extracted from Dictyota dichotoma strain KB07sp VI.


Spor rep2 KB07sp VI - s16

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spor rep2 KB07sp VI - s16

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: sporophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: diploid

characteristic: ploidy

text: Spor rep2 KB07sp VI - s16

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: KB07sp VI

text: whole thallus, fertile

characteristic: tissue type

characteristic: title


Spor rep3 KB07sp VI - s18

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CTAB

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spor rep3 KB07sp VI - s18

text: Kenny Bogaert

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: diploid

text: Spor rep3 KB07sp VI - s18

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

characteristic: sex

text: KB07sp VI

characteristic: strain

text: whole thallus, fertile


Spor reserv1 KB07sp VI - s8

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: CTAB

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spor reserv1 KB07sp VI - s8

characteristic: Submitter Id

text: Kenny Bogaert

characteristic: collection date

text: sporophyte

text: France

characteristic: geographic location (country and/or sea)

text: Kenny Bogaert

text: Morphology

characteristic: identification method

text: Dictyota dichotoma

text: diploid

characteristic: ploidy

text: Spor reserv1 KB07sp VI - s8

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Roscoff, France

text: marine

characteristic: sampling water type

text: Dictyota dichotoma

text: KB07sp VI

text: whole thallus, fertile

characteristic: tissue type

characteristic: title


Spor reserv2 KB07sp VI - s17

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CTAB

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spor reserv2 KB07sp VI - s17

text: Kenny Bogaert

text: sporophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kenny Bogaert

characteristic: identification by

text: Morphology

text: Dictyota dichotoma

characteristic: organism

text: diploid

text: Spor reserv2 KB07sp VI - s17

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Roscoff, France

characteristic: sampling site

text: marine

text: Dictyota dichotoma

characteristic: sequencing centre sample code

characteristic: sex

text: KB07sp VI

characteristic: strain

text: whole thallus, fertile


text: Petri dish cultures in Provasoli-enriched seawater. Grown under 12:12h white light at 13C. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: OmniPrep

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Collected by Frithjof C. Kupper during a dive on 13 June 2017 at Malta and isolated by Akira F. Peters.

characteristic: additional details

text: Frithjof C. Kupper

characteristic: collection date

text: nd

text: Malta

characteristic: geographic location (country and/or sea)

text: Akira Peters

text: Morphology, genome sequenced

characteristic: identification method

text: Discosporangium mesarthrocarpum

text: DNA extracted from Discosporangium mesarthrocarpum strain MT17-79 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Mediterranean Sea

characteristic: sampling sea

text: Fra Ben Qawra point, Malta

text: marine

characteristic: sampling water type

text: Discosporangium mesarthrocarpum

text: nd

text: whole thallus

characteristic: tissue type

text: DNA extracted from Discosporangium mesarthrocarpum strain MT17-79.

characteristic: title


text: No antibiotics.

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Macherey Nagel RNA+

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Frithjof C. Kupper

text: nd

characteristic: generation

text: Malta

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Discosporangium mesarthrocarpum

characteristic: organism

characteristic: sample alias

text: RNA extracted from Discosporangium mesarthrocarpum strain MT17-79 for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

text: Mediterranean Sea

text: Fra Ben Qawra point, Malta

characteristic: sampling site

text: marine

text: Discosporangium mesarthrocarpum

characteristic: sequencing centre sample code

text: nd

characteristic: sex

characteristic: strain

text: whole thallus

text: RNA extracted from Discosporangium mesarthrocarpum strain MT17-79.


characteristic: Alternative strain name

text: Air-bubbled 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics. Grown under 16:8h white light and at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. Independent isolate, not related to Ec861f. Publication: Couceiro et al. 2015 Evolution 69, 1808-1822. doi: 10.1111/evo.12702.

characteristic: additional details

text: Mickael Le Gac

characteristic: collection date

text: partheno-sporophyte

text: France

characteristic: geographic location (country and/or sea)

text: Mickael Le Gac

text: Morphology, genome sequenced

characteristic: identification method

text: Ectocarpus crouaniorum

text: haploid

characteristic: ploidy

text: DNA extracted from Ectocarpus crouaniorum strain Ec862m for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy, Brittany, France

text: marine

characteristic: sampling water type

text: Ectocarpus crouaniorum

text: male

text: genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: DNA extracted from Ectocarpus crouaniorum strain Ec862m.

characteristic: title


characteristic: Alternative strain name

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Mickael Le Gac

text: partheno-sporophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mickael Le Gac

characteristic: identification by

text: Morphology, genome sequenced

text: Ectocarpus crouaniorum

characteristic: organism

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: English Channel

text: Perharidy, Brittany, France

characteristic: sampling site

text: marine

text: Ectocarpus crouaniorum

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: genetic cross, genome sequencing

characteristic: strain

text: whole thallus


characteristic: Alternative strain name

text: Three Petri dish cultures in Provasoli-enriched seawater plus antibiotics. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. Independent isolate, not related to Ec862m. Publication: Couceiro et al. 2015 Evolution 69, 1808-1822. doi: 10.1111/evo.12702.

characteristic: additional details

text: Mickael Le Gac

characteristic: collection date

text: partheno-sporophyte

text: France

characteristic: geographic location (country and/or sea)

text: Mickael Le Gac

text: Morphology, genome sequenced

characteristic: identification method

text: Ectocarpus crouaniorum

text: haploid

characteristic: ploidy

text: DNA extracted from Ectocarpus crouaniorum strain Ec861f for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy, Brittany, France

text: marine

characteristic: sampling water type

text: Ectocarpus crouaniorum

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: DNA extracted from Ectocarpus crouaniorum strain Ec861f.

characteristic: title


characteristic: Alternative strain name

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Qiagen RNeasy kit with RLC buffer improved protocol

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: RNA RIN value

text: Mickael Le Gac

text: partheno-sporophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mickael Le Gac

characteristic: identification by

text: Morphology, genome sequenced

text: Ectocarpus crouaniorum

characteristic: organism

text: haploid

characteristic: sample alias

text: RNA extracted from Ectocarpus crouaniorum strain Ec862m for RNA-seq-based genome annotation.

characteristic: sample description

text: coastal

text: English Channel

text: Perharidy, Brittany, France

characteristic: sampling site

text: marine

text: Ectocarpus crouaniorum

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: genetic cross, genome sequencing

characteristic: strain

text: whole thallus

text: RNA extracted from Ectocarpus crouaniorum strain Ec862m.


characteristic: Alternative strain name

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Extraction date

text: Qiagen RNeasy kit RLC buffer improved protocol

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Mickael Le Gac

characteristic: collection date

text: partheno-sporophyte

text: France

characteristic: geographic location (country and/or sea)

text: Mickael Le Gac

text: Morphology, genome sequenced

characteristic: identification method

text: Ectocarpus crouaniorum

text: haploid

characteristic: ploidy

text: RNA extracted from Ectocarpus crouaniorum strain Ec861f for RNA-seq-based genome annotation.

text: coastal

characteristic: sampling ecosystem

text: English Channel

characteristic: sampling sea

text: Perharidy, Brittany, France

text: marine

characteristic: sampling water type

text: Ectocarpus crouaniorum

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: RNA extracted from Ectocarpus crouaniorum strain Ec861f.

characteristic: title


text: Ec sil Vic88 12-15f

characteristic: Alternative strain name

text: Three Petri dish cultures in Provasoli-enriched seawater plus antibiotics added at the end of the culture process. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ec05f and Ec06m are probably sister and brother, derived from a heterozygous field sporophyte. Sampled in 1988.

text: Dieter Muller

text: missing: data agreement established pre-2023

text: partheno-sporophyte

characteristic: generation

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dieter Muller

characteristic: identification by

text: Morphology, genome sequenced

text: Ectocarpus fasciculatus

characteristic: organism

text: haploid

characteristic: sample alias

text: DNA extracted from Ectocarpus fasciculatus strain EfasUO1 for genome sequencing.

characteristic: sample description

text: coastal

text: Indian Ocean

text: Flinders, Victoria, Australia

characteristic: sampling site

text: marine

text: Ectocarpus fasciculatus

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: genetic cross, genome sequencing

characteristic: strain

text: whole thallus

text: DNA extracted from Ectocarpus fasciculatus strain EfasUO1.


text: Ec sil Vic88 12-15f

characteristic: Alternative strain name

text: Air-bubbled 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients plus antibiotics. Grown under 16:8h white light and at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

text: Macherey-Nagel Nucleospin Plant II midi DNA extraction kit

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: additional details

text: Dieter Muller

characteristic: collection date

text: partheno-sporophyte

text: Australia

characteristic: geographic location (country and/or sea)

text: Dieter Muller

text: Morphology, genome sequenced

characteristic: identification method

text: Ectocarpus fasciculatus

text: haploid

characteristic: ploidy

text: coastal

characteristic: sampling ecosystem

text: Indian Ocean

characteristic: sampling sea

text: Flinders, Victoria, Australia

text: marine

characteristic: sampling water type

text: Ectocarpus fasciculatus

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

characteristic: title


text: Ec sil Vic88 12-15f

characteristic: Alternative strain name

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Dieter Muller

text: partheno-sporophyte

characteristic: generation

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dieter Muller

characteristic: identification by

text: Morphology, genome sequenced

text: Ectocarpus fasciculatus

characteristic: organism

text: haploid

characteristic: sample alias

characteristic: sample description

text: coastal

text: Indian Ocean

text: Flinders, Victoria, Australia

characteristic: sampling site

text: marine

text: Ectocarpus fasciculatus

characteristic: sequencing centre sample code

text: female

characteristic: sex

text: genetic cross, genome sequencing

characteristic: strain

text: whole thallus


text: Ec sil NZ88 4a3f

characteristic: Alternative strain name

text: Three Petri dish cultures in Provasoli-enriched seawater plus antibiotics. Grown under 12:12h white light at 13C.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Extraction date

characteristic: Extraction method

text: Genoscope CEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Original gametophyte isolated from the field. Independent isolate, not related to Ec03m. Publication: Muller 1991 J. Plant Physiol 137, 737-743. Sampled in 1988.

characteristic: additional details

text: Dieter Muller

characteristic: collection date

text: partheno-sporophyte

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Dieter Muller

text: Morphology, genome sequenced

characteristic: identification method

text: Ectocarpus fasciculatus

text: diploid

characteristic: ploidy

text: DNA extracted from Ectocarpus fasciculatus strain EfasUO2 for genome sequencing.

text: coastal

characteristic: sampling ecosystem

text: Pacific Ocean

characteristic: sampling sea

text: Kaikoura, New Zealand

text: marine

characteristic: sampling water type

text: Ectocarpus fasciculatus

text: female

text: genetic cross, genome sequencing

characteristic: sex determination method

text: whole thallus

characteristic: tissue type

text: DNA extracted from Ectocarpus fasciculatus strain EfasUO2.

characteristic: title


text: Ec191 A9 m

characteristic: Alternative strain name

text: Air-bubbled 10 L carboy cultures in Provasoli-enriched seawater with double strength Provasoli micronutrients. Grown under 16:8h white light and at 13C. No antibiotics.

characteristic: Culture conditions

text: DNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

characteristic: DNA or RNA sample code

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OmniPrep

characteristic: Harvest date

text: Genoscope CEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ec847m and Ec846f are brother and sister, inbred for 2 generations. Original designations were B4f and A9m indicating that strains Ec847m and Ec846f come from two different unilocs on the hterozygous sporophyte Ec191. Ec191 was the product of a cross between Ec188f x Ec189m, which were derived from the same field sporophyte collected at Le Caro, Britanny in 2005. Not known whether Ec188 and Ec189 were derived from the same or different unilocs. Sampled in 2015.

text: Susana Coelho

text: partheno-sporophyte

characteristic: generation

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Akira F. Peters

characteristic: identification by

text: Morphology, genome sequenced

text: Ectocarpus fasciculatus

characteristic: organism

text: haploid

characteristic: sample alias

text: DNA extracted from Ectocarpus fasciculatus strain Ec847m for genome sequencing.

characteristic: sample description

text: coastal

text: Atlantic Ocean

text: Le Caro, Rade de Brest, France

characteristic: sampling site

text: marine

text: Ectocarpus fasciculatus

characteristic: sequencing centre sample code

text: male

characteristic: sex

text: genetic cross, genome sequencing

characteristic: strain

text: whole thallus

text: DNA extracted from Ectocarpus fasciculatus strain Ec847m.