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text: crustacean metagenome

characteristic: organism

text: WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris chacei midgut tube symbionts, stage A from TAG, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: midgut tube

text: 16S partial rRNA (V3-V4) of Rimicaris chacei midgut tube symbionts, specimen Cr108

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: stage A

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: TCTTAA

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: cephalothorax

text: 16S partial rRNA (V3-V4) of Rimicaris chacei cephalothoracic cavity symbionts, specimen Cr107


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: stage A

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: CAGTGA

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: gills

text: 16S partial rRNA (V3-V4) of Rimicaris chacei gills symbionts, specimen Cr107

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: stage A

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: GAGCAA

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: foregut

text: 16S partial rRNA (V3-V4) of Rimicaris chacei foregut symbionts, specimen Cr107


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: stage A

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: TACTCA

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: midgut tube

text: 16S partial rRNA (V3-V4) of Rimicaris chacei midgut tube symbionts, specimen Cr107

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: stage A

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: CGTTTC

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris chacei cephalothoracic cavity symbionts, stage A from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: cephalothorax

text: 16S partial rRNA (V3-V4) of Rimicaris chacei cephalothoracic cavity symbionts, specimen bebe13A


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: stage A

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: CCCGGC

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris chacei gills symbionts, stage A from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: gills

text: 16S partial rRNA (V3-V4) of Rimicaris chacei gills symbionts, specimen bebe13A

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: stage A

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: ACTTTT

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris chacei foregut symbionts, stage A from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: foregut

text: 16S partial rRNA (V3-V4) of Rimicaris chacei foregut symbionts, specimen bebe13


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: stage A

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: CGTCGC

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris chacei midgut tube symbionts, stage A from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: midgut tube

text: 16S partial rRNA (V3-V4) of Rimicaris chacei midgut tube symbionts, specimen bebe13A

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

text: 5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: adult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: TACCTG

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gonad symbionts, adult from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: gonad

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gonad symbionts, specimen MG6


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: adult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: GGACGG

text: crustacean metagenome

characteristic: organism

text: WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, adult from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: gills

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, specimen MG6

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: adult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: CTTGCA

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata hepatopancreas symbionts, adult from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: hepatopancreas

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata hepatopancreas symbionts, specimen MG6


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: stage A

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: CCCGTT

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cephalothorax

text: 16S partial rRNA (V3-V4) of Rimicaris chacei cephalothoracic cavity symbionts, specimen bebe15A

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: stage A

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: CTCGGT

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris chacei gills symbionts, stage A from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: gills

text: 16S partial rRNA (V3-V4) of Rimicaris chacei gills symbionts, specimen bebe15A


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: stage A

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: GGCCAA

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: foregut

text: 16S partial rRNA (V3-V4) of Rimicaris chacei foregut symbionts, specimen bebe15

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: stage A

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: CGTTGG

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: midgut tube

text: 16S partial rRNA (V3-V4) of Rimicaris chacei midgut tube symbionts, specimen bebe15A


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: subadult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: AGTAAG

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata cephalothoracic cavity symbionts, subadult from TAG, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cephalothorax

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata cephalothoracic cavity symbionts, specimen Cr179

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: subadult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: TACGGC

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, subadult from TAG, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: gills

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, specimen Cr179


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: 5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: subadult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: CGCACA

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata foregut symbionts, subadult from TAG, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: foregut

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata foregut symbionts, specimen Cr179

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: subadult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: CAGTTC

characteristic: multiplex identifiers

text: crustacean metagenome

text: WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata midgut tube symbionts, subadult from TAG, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: midgut tube

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata midgut tube symbionts, specimen Cr179


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: subadult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: AAATGT

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata cephalothoracic cavity symbionts, subadult from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cephalothorax

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata cephalothoracic cavity symbionts, specimen R261

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: subadult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: CAACGA

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, subadult from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: gills

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, specimen R261


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: subadult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: GGAGGT

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata foregut symbionts, subadult from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: foregut

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata foregut symbionts, specimen R261

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: subadult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: AATGGT

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata midgut tube symbionts, subadult from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: midgut tube

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata midgut tube symbionts, specimen R261


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: subadult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: GTGACG

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cephalothorax

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata cephalothoracic cavity symbionts, specimen R271

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: subadult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: AAGGTG

characteristic: multiplex identifiers

text: crustacean metagenome

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, subadult from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: gills

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, specimen R271


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: 5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: subadult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: GCATGG

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata foregut symbionts, subadult from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: foregut

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata foregut symbionts, specimen R271

characteristic: title


characteristic: ENA first public

text: Ifremer

text: public

characteristic: Submitter Id

text: 16S rRNA

characteristic: adapters

text: hydrothermal vent

characteristic: broad-scale environmental context

text: SeBiMER

characteristic: broker name

text: ifremer

characteristic: collecting institution

characteristic: collection date

text: crustacean metagenome

characteristic: common name

characteristic: depth

text: subadult

text: organ

text: host-associated

characteristic: environmental package

text: yes

text: Atlantic Ocean

text: Mid-Atlantic Ridge

characteristic: geographic location (region and locality)

characteristic: investigation type

characteristic: isolate

text: hydrothermal vent

text: arthropoda

text: GTAACA

characteristic: multiplex identifiers

text: crustacean metagenome

text: WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3

characteristic: project name

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata midgut tube symbionts, subadult from Snake Pit, amplified by Nested PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

text: midgut tube

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata midgut tube symbionts, specimen R271


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Ifremer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA

text: hydrothermal vent

text: SeBiMER

text: ifremer

text: crustacean metagenome

text: subadult

text: organ

characteristic: environmental medium

text: host-associated

text: yes

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mid-Atlantic Ridge

text: hydrothermal vent

text: arthropoda

characteristic: local environmental context

text: GGTCCG

text: crustacean metagenome

characteristic: organism

characteristic: pcr primers

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata cephalothoracic cavity symbionts, subadult from Snake Pit, amplified by Direct PCR.

text: crustacean metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cephalothorax

text: 16S partial rRNA (V3-V4) of Rimicaris exoculata cephalothoracic cavity symbionts, specimen R272

characteristic: title


characteristic: ENA first public

text: public

tag: Namespace:Leibniz Institute for Natural Product Research and Infection Biology

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: healthy

characteristic: description

text: Germany

text: Homo sapiens

text: Homo sapiens

text: D


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Leibniz Institute for Natural Product Research and Infection Biology

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: healthy

text: Germany

text: Homo sapiens

text: Homo sapiens

text: D


text: public

characteristic: SRA accession

text: human

text: transplantation

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: A


text: public

text: human

text: transplantation

text: Germany

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: B


text: public

text: human

text: transplantation

text: Germany

text: Homo sapiens

text: Homo sapiens

text: C


text: public

text: human

text: transplantation

text: Germany

text: Homo sapiens

text: Homo sapiens

text: D


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: ANA LUÍSA MARTINS

text: Instituto de Ciências Biomédicas Abel Salazar

characteristic: collecting institution

text: cat roundworm

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Porto

characteristic: geographic location (region and locality)

text: Cat intestine

characteristic: habitat

text: ANA LUÍSA MARTINS

text: adult

characteristic: lifestage

text: Toxocara cati

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Toxocara cati

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ANA LUÍSA MARTINS

characteristic: collection date

text: dog roundworm

characteristic: common name

text: Portugal

text: Porto

text: Cat intestine

text: ANA LUÍSA MARTINS

text: adult

text: Toxocara canis

text: WHOLE ORGANISM

text: ToL

text: Toxocara canis

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ANA LUÍSA MARTINS

characteristic: collecting institution

text: dog roundworm

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Porto

text: Dog intestine

text: ANA LUÍSA MARTINS

text: adult

text: Toxocara canis

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Toxocara canis

text: NOT COLLECTED

text: NOT PROVIDED

text: N


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: ANA LUÍSA MARTINS

text: dog heartworm nematode

text: Portugal

characteristic: geographic location (longitude)

text: Caminha

characteristic: geographic location (region and locality)

text: Dog heart

characteristic: habitat

text: ANA LUÍSA MARTINS

text: adult

characteristic: lifestage

text: Dirofilaria immitis

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Dirofilaria immitis

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ANA LUÍSA MARTINS

characteristic: collection date

text: thelaziosis nematode

text: Portugal

text: Porto

text: Dog eye

text: ANA LUÍSA MARTINS

text: adult

text: Thelazia callipaeda

text: WHOLE ORGANISM

text: ToL

text: Thelazia callipaeda

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ANA LUÍSA MARTINS

characteristic: collecting institution

text: herring worm

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Porto

text: Fish intestine

text: ANA LUÍSA MARTINS

text: adult

text: Anisakis simplex

text: WHOLE ORGANISM

text: ToL

text: Anisakis simplex

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: title


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: ANA LUÍSA MARTINS

text: pig roundworm

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marco de Canaveses

characteristic: geographic location (region and locality)

text: Suine small intestine

characteristic: habitat

text: ANA LUÍSA MARTINS

text: adult

characteristic: lifestage

text: Ascaris suum

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Ascaris suum

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ANA LUÍSA MARTINS

characteristic: collection date

text: cat roundworm

text: Portugal

text: Porto

text: Cat intestine

text: ANA LUÍSA MARTINS

text: adult

text: Toxocara cati

text: WHOLE ORGANISM

characteristic: project name

characteristic: sample same as

text: Toxocara cati

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ANA LUÍSA MARTINS

characteristic: collecting institution

text: dog roundworm

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Porto

text: Cat intestine

text: ANA LUÍSA MARTINS

text: adult

text: Toxocara canis

text: WHOLE ORGANISM

text: Toxocara canis

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

text: Tree of Life Programme

text: public

text: ANA LUÍSA MARTINS

text: dog roundworm

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Porto

characteristic: geographic location (region and locality)

text: Dog intestine

characteristic: habitat

text: ANA LUÍSA MARTINS

text: adult

characteristic: lifestage

text: Toxocara canis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: Toxocara canis

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ANA LUÍSA MARTINS

characteristic: collection date

text: dog heartworm nematode

text: Portugal

text: Caminha

text: Dog heart

text: ANA LUÍSA MARTINS

text: adult

text: Dirofilaria immitis

text: WHOLE ORGANISM

characteristic: project name

characteristic: sample same as

text: Dirofilaria immitis

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ANA LUÍSA MARTINS

characteristic: collecting institution

text: thelaziosis nematode

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Porto

text: Dog eye

text: ANA LUÍSA MARTINS

text: adult

text: Thelazia callipaeda

text: WHOLE ORGANISM

text: Thelazia callipaeda

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

text: Tree of Life Programme

text: public

text: ANA LUÍSA MARTINS

text: herring worm

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Porto

characteristic: geographic location (region and locality)

text: Fish intestine

characteristic: habitat

text: ANA LUÍSA MARTINS

text: adult

characteristic: lifestage

text: Anisakis simplex

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: Anisakis simplex

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ANA LUÍSA MARTINS

characteristic: collection date

text: pig roundworm

text: Portugal

text: Marco de Canaveses

text: Suine small intestine

text: ANA LUÍSA MARTINS

text: adult

text: Ascaris suum

text: WHOLE ORGANISM

characteristic: project name

characteristic: sample same as

text: Ascaris suum

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


text: IMEDEA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Metagenome from Rio Maior solar saltern

characteristic: description

text: Portugal

characteristic: geographic location (country and/or sea)

text: brine metagenome

text: brine metagenome

text: Rio Maior


text: yes

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

characteristic: Sample

text: clinical

characteristic: Source

text: Portugal

text: Homo sapiens

characteristic: host scientific name

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

text: public

text: Foetus

text: Animal

text: Livestock

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes


text: no

text: public

text: Spleen

text: Animal

text: Livestock

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: title


characteristic: ENA first public

text: no

text: public

text: Faeces

text: Animal

text: Livestock

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

text: no

text: public

text: Lung

text: Animal

text: Livestock

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

characteristic: INSDC center name

text: public

text: Liver

text: Animal

text: Livestock

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

text: public

text: Uterus

text: Animal

text: Livestock

characteristic: Submitter Id

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

text: public

text: Cage

text: Environment

text: Environment

characteristic: collection date

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

text: public

text: Floor

text: Environment

text: Environment

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

text: public

text: Walls

text: Environment

text: Environment

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

text: public

text: Feeders

text: Environment

text: Environment

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: no

text: public

text: Water

text: Environment

text: Environment

text: INSA-DDI and ICBAS

text: Portugal

text: Listeria monocytogenes

text: Listeria monocytogenes


text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: not provided

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: public

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: REUH-NMRL

text: public

text: HIV

characteristic: description

text: Latvia

text: human feces metagenome

text: human feces metagenome


text: REUH-NMRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HIV/HCV

text: Latvia

text: human feces metagenome

text: human feces metagenome


text: REUH-NMRL

text: public

text: HCV

text: Latvia

characteristic: geographic location (country and/or sea)

text: human feces metagenome

characteristic: organism

text: human feces metagenome


Zmicro

text: REUH-NMRL

text: public

text: Zmicro

characteristic: Submitter Id

text: PosCtrlMicrobial

text: Latvia

text: human feces metagenome

text: human feces metagenome

text: Zmicro

characteristic: title


ZDNA

text: REUH-NMRL

text: public

text: ZDNA

text: PosCtrlDNA

text: Latvia

text: human feces metagenome

text: human feces metagenome

text: ZDNA


text: REUH-NMRL

text: public

text: NegCtrl

text: Latvia

text: human feces metagenome

text: human feces metagenome


text: Spodoptera frugiperda

characteristic: Organism

text: not provided

text: 2018 Kenya-collected Fall Armyworm sample

text: Kenya

text: Spodoptera frugiperda

characteristic: scientific name

Name: State Key Laboratory of Conservation and Utilization of Biological Resources of Yunnan

Address: Kunming, China

Pengfei Fu

FirstName: Pengfei

LastName: Fu


text: Spodoptera frugiperda

text: not provided

text: 2019 Ethiopia-collected Fall Armyworm sample

text: Ethiopia

text: Spodoptera frugiperda


text: Spodoptera frugiperda

text: not provided

text: 2019 South Africa-collected Fall Armyworm sample

text: South Africa

text: Spodoptera frugiperda


text: Spodoptera frugiperda

text: not provided

text: 2020 Myanmar-collected Fall Armyworm sample

text: Myanmar

text: Spodoptera frugiperda


text: Spodoptera frugiperda

text: not provided

text: 2020 Laos-collected Fall Armyworm sample

text: Laos

text: Spodoptera frugiperda


text: Spodoptera frugiperda

text: not provided

text: 2020 Vietnam-collected Fall Armyworm sample

text: Viet Nam

text: Spodoptera frugiperda


text: Spodoptera frugiperda

text: not provided

text: 2019 China-collected Fall Armyworm sample

text: China

text: Spodoptera frugiperda


text: SC

text: public

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

characteristic: description

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: 2L flask culture in MIEB12 freshwater medium at 20C 12:12 day/night, white light (thermostatic growth cabinet)

characteristic: Culture conditions

text: RNA

characteristic: DNA or RNA extracted

characteristic: DNA or RNA quality (ratio 260/280)

text: RNA_Phaeoth (12/06/2019)

characteristic: DNA or RNA sample code

characteristic: Extraction date

text: RNAplus

characteristic: Extraction method

characteristic: Harvest date

text: Genoscope CEA

text: public

characteristic: RNA RIN value

text: Publication: Lang, I., Hodac, L., Friedl, T. and Feussner, I. 2011 BMC Plant Biology 11, 124. Sampled in 1965.

characteristic: additional details

text: R. M. Brown

text: missing: data agreement established pre-2023

characteristic: collection date

text: nd

characteristic: generation

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Morphology, genome sequenced

characteristic: identification method

text: R. M. Brown

text: Phaeothamnion confervicola

characteristic: sample alias

text: RNA extracted from Phaeothamnion wetherbeei strain SAG 119.79 for RNA-seq-based genome annotation.

characteristic: sample description

text: inland

characteristic: sampling sea

text: Europe?

characteristic: sampling site

text: fresh

characteristic: sampling water type

text: Phaeothamnion confervicola

characteristic: sequencing centre sample code

text: nd

characteristic: sex

text: SAG 119.79

characteristic: strain

text: whole thallus

characteristic: tissue type

text: RNA extracted from Phaeothamnion wetherbeei strain SAG 119.79.


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: Western Cape

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: title


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

text: Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Agona


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Heidelberg


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Saintpaul


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Virchow


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Northern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Northern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Agona


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: External Id

text: Cancer Science Institute of Singapore

characteristic: INSDC last update

text: public

tag: Namespace:Cancer Science Institute of Singapore

text: human

characteristic: common name

text: untreated

text: Homo sapiens

text: Homo sapiens

text: Control replicate 1


characteristic: ENA first public

text: Cancer Science Institute of Singapore

text: public

text: human

text: EPZ-6438 2uM 72h

text: Homo sapiens

text: Homo sapiens

text: EPZ replicate 1


characteristic: ENA-CHECKLIST

text: Cancer Science Institute of Singapore

text: public

text: human

text: GSK126 2uM 72h

text: Homo sapiens

text: Homo sapiens

text: GSK replicate 1


text: Cancer Science Institute of Singapore

characteristic: INSDC center name

text: public

text: human

text: untreated

text: Homo sapiens

text: Homo sapiens

text: Control replicate 2


text: Cancer Science Institute of Singapore

text: public

characteristic: INSDC status

text: human

text: EPZ-6438 2uM 72h

text: Homo sapiens

text: Homo sapiens

text: EPZ replicate 2


text: Cancer Science Institute of Singapore

text: public

characteristic: SRA accession

text: human

text: GSK126 2uM 72h

text: Homo sapiens

text: Homo sapiens

text: GSK replicate 2


text: Cancer Science Institute of Singapore

text: public

characteristic: Submitter Id

text: human

text: untreated

text: Homo sapiens

text: Homo sapiens

text: Control replicate 3


text: Cancer Science Institute of Singapore

text: public

text: human

text: EPZ-6438 2uM 72h

text: Homo sapiens

text: Homo sapiens

text: EPZ replicate 3


text: Cancer Science Institute of Singapore

text: public

text: human

text: GSK126 2uM 72h

text: Homo sapiens

text: Homo sapiens

text: GSK replicate 3


text: male

characteristic: ArrayExpress-SEX

text: Homo Sapiens

characteristic: ArrayExpress-SPECIES

text: Male

characteristic: GENDER

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: STATION BIOLOGIQUE DE ROSCOFF

text: public

tag: Namespace:STATION BIOLOGIQUE DE ROSCOFF

text: Bicose2 scientific board

text: not applicable

characteristic: depth

text: hydrothermal vent gastropod

characteristic: description

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: North Mid Atlantic Ridge : TAG

characteristic: geographic location (region and locality)

characteristic: isolate

text: 26.1370853 -44.8259322

text: Peltospira smaragdina

text: Peltospira smaragdina


characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

text: public

text: Bicose2 scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Atlantic Ocean

text: North Mid Atlantic Ridge : Snake_Pit

text: 23.368503 -44.9518463

text: Peltospira smaragdina

characteristic: organism

text: Peltospira smaragdina

characteristic: title


characteristic: ENA first public

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC last update

text: public

text: Bicose2 scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Atlantic Ocean

text: North Mid Atlantic Ridge : Snake_Pit

text: 23.3685149 -44.951836

text: Peltospira smaragdina

text: Peltospira smaragdina


characteristic: ENA-CHECKLIST

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

text: Transect scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Atlantic Ocean

text: North Mid Atlantic Ridge : Broken spur

text: 29.16715 -43.1738

text: Peltospira smaragdina

text: Peltospira smaragdina


text: STATION BIOLOGIQUE DE ROSCOFF

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Transect scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Atlantic Ocean

text: North Mid Atlantic Ridge : Rainbow

text: 36.23 -33.902

text: Peltospira smaragdina

text: Peltospira smaragdina


text: STATION BIOLOGIQUE DE ROSCOFF

text: public

characteristic: Submitter Id

text: VENTuRE survey scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Atlantic Ocean

text: North Mid Atlantic Ridge : Moytirra

text: 45.4833 -27.85

text: Peltospira smaragdina

text: Peltospira smaragdina


text: STATION BIOLOGIQUE DE ROSCOFF

text: public

text: Momarsat2016 scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Portugal

text: North Mid Atlantic Ridge : Lucky Strike

text: 37.2895979 -32.2773804

text: Peltospira smaragdina

text: Peltospira smaragdina


text: STATION BIOLOGIQUE DE ROSCOFF

text: public

text: Bicose2 scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Atlantic Ocean

text: North Mid Atlantic Ridge : TAG

text: 26.137185 -44.825765

text: Peltospira smaragdina

text: Peltospira smaragdina


text: STATION BIOLOGIQUE DE ROSCOFF

text: public

text: Momarsat2019 scientific board

text: not applicable

text: hydrothermal vent gastropod

text: Portugal

text: North Mid Atlantic Ridge : Lucky Strike

text: 37.290504 -32.2821113

text: Peltospira smaragdina

text: Peltospira smaragdina


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

characteristic: common name

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library A 3 day after puromycin selection 1st replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library A after 5 rounds of Gemcitabine selection 1st replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library A 3 day after puromycin selection 2nd replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library A after 5 rounds of Gemcitabine selection 2nd replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library A 3 day after puromycin selection 3rd replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library A after 5 rounds of Gemcitabine selection 3rd replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library B 3 day after puromycin selection 1st replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library B after 5 rounds of Gemcitabine selection 1st replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library B 3 day after puromycin selection 2nd replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library B after 5 rounds of Gemcitabine selection 2nd replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library B 3 day after puromycin selection 3rd replicate

text: Mus musculus

text: Mus musculus


text: Universitaetsklinikum Erlangen

text: public

text: house mouse

text: 2-D Cell line TB32047 derived from KPC mouse model transduced with Cas9 and GeCKO half library B after 5 rounds of Gemcitabine selection 3rd replicate

text: Mus musculus

text: Mus musculus


text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: public

tag: Namespace:NATIONAL UNIVERSITY OF IRELAND, GALWAY

characteristic: collection date

text: wastewater sludge

characteristic: environment (biome)

text: sedimentation tank sludge

characteristic: environment (feature)

text: wastewater sludge

characteristic: environment (material)

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: FED-AMR

characteristic: project name

text: metagenome

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA first public

characteristic: External Id

text: Luxembourg Institute of Health

characteristic: INSDC last update

text: public

tag: Namespace:Luxembourg Institute of Health

text: house mouse

text: Colon tissue

characteristic: description

text: vivarium (ENVO:00010622)

text: Luxembourg

characteristic: geographic location (country and/or sea)

text: 10 weeks

unit: weeks

characteristic: host age

text: mouse

characteristic: host common name

text: Fiber-rich diet

characteristic: host diet

text: adult

characteristic: host life stage

text: male/female

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

unit: g

characteristic: host total mass

text: host-associated

characteristic: host-associated environmental package

text: Mus musculus

characteristic: organism

text: TMURIS

text: Mus musculus

text: Increased gut microbial mucin foraging promotes clearance of a parasitic worm

characteristic: title


27 cc

characteristic: ENA-CHECKLIST

text: Luxembourg Institute of Health

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 27 cc

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Cecal content

text: vivarium (ENVO:00010622)

characteristic: environment (biome)

text: Luxembourg

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 10 weeks

text: mouse

text: FR

text: adult

text: male/female

text: host-associated

text: Mus musculus

text: Citrobacter 13/14SM FR/FF

characteristic: project name

text: Mus musculus


33 col

characteristic: ENA first public

characteristic: External Id

text: Luxembourg Institute of Health

characteristic: INSDC last update

text: public

text: 33 col

text: house mouse

text: Colon tissue

characteristic: description

text: vivarium (ENVO:00010622)

text: Luxembourg

characteristic: geographic location (country and/or sea)

text: 10 weeks

characteristic: host age

text: mouse

characteristic: host common name

text: FR

characteristic: host diet

text: adult

characteristic: host life stage

text: male/female

characteristic: host sex

text: host-associated

text: Mus musculus

text: Citrobacter 13/14SM FR/FF

text: Mus musculus