characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599371 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Sulfitobacter sp.

text: uncultured Sulfitobacter sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599371_concoct_57

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594407 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

unit: DD

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Cobetia sp.

characteristic: organism

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

characteristic: project name

characteristic: sample derived from

text: uncultured Cobetia sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR594407_binner12_Refined_32


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594412 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR594412_concoct_65

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599351 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Sulfitobacter sp.

characteristic: organism

characteristic: project name

text: uncultured Sulfitobacter sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599351_binner13_Refined_24


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599354 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Roseivirga seohaensis

characteristic: sample derived from

text: Roseivirga seohaensis

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599354_binner13_Refined_8


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599341 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Pelagibacterium sp.

text: uncultured Pelagibacterium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599341_concoct_105

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599373 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Sphingomonadales bacterium

characteristic: organism

characteristic: project name

text: uncultured Sphingomonadales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599373_binner12_Refined_22


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599372 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Roseobacteraceae bacterium

characteristic: sample derived from

text: uncultured Roseobacteraceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599372_concoct_36


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599374 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599374_binner123_Refined_11

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Caulobacteraceae bacterium

characteristic: organism

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

characteristic: project name

text: uncultured Caulobacteraceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599372_binner123_Refined_14


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Psychrobacter sp.

characteristic: sample derived from

text: uncultured Psychrobacter sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599373_concoct_37


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599368 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Rhodobiaceae bacterium

text: uncultured Rhodobiaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599368_binner13_Refined_4

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599371 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Saccharibacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599371_binner12_Refined_30


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599366 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Roseobacteraceae bacterium

characteristic: sample derived from

text: uncultured Roseobacteraceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599366_binner123_Refined_36


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599369 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Idiomarina abyssalis

text: Idiomarina abyssalis

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599369_binner123_Refined_15

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Alcanivorax sp.

characteristic: organism

characteristic: project name

text: uncultured Alcanivorax sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599369_binner12_Refined_1


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599365 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Polaribacter sp.

characteristic: sample derived from

text: uncultured Polaribacter sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599365_concoct_63


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Rhodothermales bacterium

text: uncultured Rhodothermales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599365_binner13_Refined_37

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599356 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Marinobacter nauticus

characteristic: organism

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

characteristic: project name

text: Marinobacter nauticus

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599356_concoct_82


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599351 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Pseudomonadaceae bacterium

characteristic: sample derived from

text: uncultured Pseudomonadaceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599351_metabat2_26


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599347 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Aurantimonas coralicida

text: Aurantimonas coralicida

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599347_binner23_Refined_18

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594355 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Rhodospirillaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594355_binner12_Refined_100


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599341 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Haliea sp.

characteristic: sample derived from

text: uncultured Haliea sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599341_concoct_72


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599383 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Rhodobiaceae bacterium

text: uncultured Rhodobiaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599383_binner23_Refined_14

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599376 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodospirillaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599376_concoct_64


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599372 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Sneathiella sp.

characteristic: sample derived from

text: uncultured Sneathiella sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599372_concoct_65


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599361 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Micavibrio sp.

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

text: uncultured Micavibrio sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599361_binner12_Refined_56

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594409 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Porticoccus sp.

characteristic: organism

characteristic: project name

text: uncultured Porticoccus sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594409_binner13_Refined_13


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594398 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Methylophaga sp.

characteristic: sample derived from

text: uncultured Methylophaga sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR594398_binner123_Refined_13


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594405 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Pseudoalteromonas sp.

text: uncultured Pseudoalteromonas sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR594405_binner12_Refined_39

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594407 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Actibacterium sp.

characteristic: organism

characteristic: project name

text: uncultured Actibacterium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594407_binner13_Refined_37


characteristic: ENA-CHECKLIST

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Marinobacter sp.

characteristic: sample derived from

text: uncultured Marinobacter sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599372_binner12_Refined_26


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599369 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Croceibacter atlanticus

text: Croceibacter atlanticus

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599369_concoct_88

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599371 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Hyphomicrobiales bacterium

characteristic: organism

characteristic: project name

text: uncultured Hyphomicrobiales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599371_concoct_44


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599365 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Roseovarius nubinhibens

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

characteristic: sample derived from

text: Roseovarius nubinhibens

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599365_concoct_124


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599364 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flavobacteriaceae bacterium

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599364_concoct_42

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594353 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Mesoflavibacter sp.

characteristic: organism

characteristic: project name

text: uncultured Mesoflavibacter sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594353_concoct_141


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599368 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Panacagrimonas sp.

characteristic: sample derived from

text: uncultured Panacagrimonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599368_concoct_27


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599374 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Phycisphaerales bacterium

text: uncultured Phycisphaerales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599374_concoct_56

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Saccharibacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599369_concoct_0


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594384 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Arenimonas sp.

characteristic: sample derived from

text: uncultured Arenimonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR594384_binner12_Refined_6


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594355 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Alcanivorax sp.

text: uncultured Alcanivorax sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR594355_binner12_Refined_64

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2752157 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Salinibacterium sp.

characteristic: organism

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

characteristic: project name

text: uncultured Salinibacterium sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2752157_concoct_76


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594396 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Actibacterium sp.

characteristic: sample derived from

text: uncultured Actibacterium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR594396_binner123_Refined_13


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594377 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Shewanella sp.

text: uncultured Shewanella sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR594377_concoct_53

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: Rhodococcus fascians

characteristic: organism

characteristic: project name

text: Rhodococcus fascians

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2752157_binner13_Refined_3


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594389 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Balneola sp.

characteristic: sample derived from

text: uncultured Balneola sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR594389_binner123_Refined_24


characteristic: ENA-CHECKLIST

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594409 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR594409_binner12_Refined_19

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Aequorivita sp.

characteristic: organism

characteristic: project name

text: uncultured Aequorivita sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594389_concoct_80


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594392 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Maritimibacter sp.

characteristic: sample derived from

text: uncultured Maritimibacter sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR594392_binner12_Refined_39


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599366 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Bizionia echini

text: Bizionia echini

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599366_concoct_2

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594365 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flavobacteriaceae bacterium

characteristic: organism

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

characteristic: project name

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594365_metabat2_14


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2752157 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Allopontixanthobacter confluentis

characteristic: sample derived from

text: Allopontixanthobacter confluentis

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR2752157_concoct_36


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594377 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Gammaproteobacteria bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR594377_binner23_Refined_12

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594376 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594376_concoct_13


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2752158 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Roseovarius sp.

characteristic: sample derived from

text: uncultured Roseovarius sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR2752158_binner123_Refined_43


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Salegentibacter sp.

text: uncultured Salegentibacter sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2752157_concoct_67

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Hyphomonas sp.

characteristic: organism

characteristic: project name

text: uncultured Hyphomonas sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2752157_binner23_Refined_67


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594362 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Thalassospira sp.

characteristic: sample derived from

text: uncultured Thalassospira sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR594362_binner123_Refined_12


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Pseudomonas sp.

text: Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.

text: uncultured Pseudomonas sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2752158_binner12_Refined_44

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594353 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Methylophaga sp.

characteristic: organism

characteristic: project name

text: uncultured Methylophaga sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR594353_binner123_Refined_11


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599372 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Stutzerimonas sp.

characteristic: sample derived from

text: uncultured Stutzerimonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599372_binner13_Refined_17


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599376 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodospirillaceae bacterium

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599376_binner123_Refined_11

characteristic: title


characteristic: ENA-CHECKLIST

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599375 of study ERP003708.

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Roseobacter sp.

characteristic: organism

characteristic: project name

text: uncultured Roseobacter sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599375_metabat2_24


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599341 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Paraglaciecola sp.

characteristic: sample derived from

text: uncultured Paraglaciecola sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: ERR599341_binner123_Refined_9


characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: tara

characteristic: environmental medium

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Aequorivita sp.

text: uncultured Aequorivita sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR599376_binner23_Refined_15

characteristic: title


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

text: EBI-EMG

text: not provided

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599344 of study ERP003708.

characteristic: description

text: tara

text: not provided

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Citromicrobium sp.

characteristic: organism

characteristic: project name

text: uncultured Citromicrobium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR599344_binner13_Refined_5


characteristic: ENA-CHECKLIST

text: Cancer Research UK Cambridge Institute, University of Cambridge

text: public

text: ArrayExpress

characteristic: broker name

text: hTERT RPE-1

text: retinal cell

text: not collected

text: human

characteristic: common name

text: Protocols: RPE1 WT or CSB-/- cells were seeded in 6 well plate at 160000 cells/well in 10% FBS containing media in technical triplicate. The following day, to synchronize cells in G1, media was removed, cells were washed once with PBS, and 1% FBS-containing media was added. 24h later, cells were treated with 1.75mM formaldehyde to induce DPCs. After 1h, formaldehyde-containing media was removed and cells were washed twice with PBS. Cells were either harvested immediately or allowed to recover for 6h. Cells were harvested by scraping in 150µl 2% SDS, 20 mM Tris/HCl pH 7.5, transferred to 1.5ml tubes, snap frozen in liquid nitrogen and stored at -80°C.  CUT&Tag was performed as previously described84 in high salt conditions in biological triplicate. A reference, pre-treatment sample was collected 48h post-transduction. Every other day, cells were counted and replated at 500X library coverage in fresh medium with or without formaldehyde or 5-aza-dC at doses calculated to cause 50% growth inhibition (155µM and 55nM, respectively). Representative cell pellets were harvested for genomic DNA extractions, library preparation and NGS at day 2 (initialome), at day 10 (essentialome) and at day 24 (endpoint drug treatment).  For KCl/SDS precipitation, samples were thawed at 55°C for 5 min (1200 rpm shaking) and sonicated using Covaris® Focused ultrasonicator E220evo in 130µl tubes (microTUBE AFA Fiber Pre-Slit Snap-Cap 6x16mm; 1x cycle, 120 sec). Next, samples were transferred to 1.5ml tubes and 270µl 2 %SDS, 20 mM Tris/HCl pH 7.5 was added to a final total volume of 400µl. DNA extraction was performed on 10% of the total lysate using the GeneJET Genomic DNA Purification Kit (Thermo Scientific, 10410450) and considered as Input. For KCl/SDS precipitation of the remaining lysate, 400µl of 200mM KCl, 20mM Tris/HCl pH 7.5 was added to each sample, followed by incubation on ice for 5min and full speed centrifugation at 4°C (5 min). Supernatants (soluble DNA) were transferred to a new tube for DNA quantification. Pellets (containing protein and protein+crosslinked DNA) were washed three times according to the following steps: addition of 400µl 200 mM KCl, 20 mM Tris–HCl (pH 7.5), incubation at 55°C for 5 min (1200 rpm shaking), incubation on ice (5 min), full speed centrifugation 4°C (5min). Next, pellets were resuspended in 400 µl 200 mM KCl, 20 mM Tris–HCl (pH 7.5) containing Proteinase K (0.2mg/ml) and incubated at 55°C for 45 min (800 rpm shaking) for protein digestion. 10µl UltraPure BSA (Thermo Scientific, AM2616, 50 mg/ml) was added followed by cooling on ice for 5 min, followed by centrifugation maximum speed at 4oC for 5 min. Next, supernatants containing crosslinked DNA were collected. Soluble and crosslinked DNA samples were treated with 0.2mg/ml DNAse-free RNAse A (Sigma-Aldrich) for 30min at 37°C. DNA concentrations were determined using Qubit™ dsDNA HS Assay Kit (Thermo Scientific) according to the manufacturer’s instructions. Relative DPC amounts between samples were calculated using the ratio between crosslinked DNA and total DNA (crosslinked plus soluble DNA) as a surrogate for DPC persistence. Genomic DNA (gDNA) was extracted using the QIAamp DNA Blood Maxi Kit (Qiagen) as per the manufacturer’s instructions.  200 μg RNA (in a total volume of 116 μl) was fragmented by adding 4 μl of 5 M NaOH and left on ice for 30 min. Fragmentation was stopped by addition of 80 μl of 1 M Tris pH 7 and cleaned up twice using the Micro Bio-Spin P-30 Gel Columns (BioRad, 7326223) according to the manufacturer’s instructions. Biotinylation of 4SU-residues was performed in a total volume of 250 μl, containing 10 mM Tris-HCl pH 7.4, 1 mM EDTA and 5 mg of MTSEA biotin-XX linker (Biotium, BT90066) for 30 min at room temperature in the dark. RNA was then purified by phenol–chloroform extraction, denatured by 10 min incubation at 65 °C and added to 150 μl μMACS Streptavidin MicroBeads (Milentyl, 130-074-101). RNA was incubated with beads for 15 min at room temperature and beads were applied to a μColumn in the magnetic field of a μMACS magnetic separator. The beads were washed twice with 55°C pull-down wash buffer (100 mM Tris-HCl, pH 7.4, 10 mM EDTA, 1 M NaCl and 0.1% Tween-20). Biotinylated RNA was eluted twice by addition of 100 mM DTT and cleaned up using the RNeasy MinElute kit (Qiagen, 74204) using 1,050 μl ethanol (≥99%) per 200 μl reaction after addition of 700 μl of RLT buffer to precipitate RNA of less than 200 nucleotides. At least 30 ng of the purified 4SU-labelled RNA was then used as input for the TruSeq Stranded Total RNA kit (Illumina, 20020596) for library preparation. The libraries were amplified according to the manufacturer’s instructions. The library was amplified with 10 PCR cycles and quality-control checked on the TapeStation (Agilent) using the High Sensitivity DNA kit before pooling and paired-end sequencing on the NextSeq 550 (Illumina) system. Per condition, 200,000 untreated, formaldehyde-treated or released cells were resuspended in Wash buffer (20mM HEPES pH 7.5, 600 mM NaCl, 0.5 mM Spermidine, 1x Protease inhibitor cocktail) and prepared with Concanavalin A (ConA)-coated magnetic beads (Bangs Laboratories, BP531) beads. Primary antibodies (Table 3) were incubated 1:50 overnight. Cells were washed with Dig-wash buffer (0.05% digitonin, 20 mM HEPES pH 7.5, 600 mM NaCl, 0.5 mM spermidine in nuclease-free water with a Roche Complete Protease Inhibitor EDTA-free tablet) and secondary antibody (Table 3) was added 1:50 and incubated for 2 hr at 25oC. Cells were washed three times with 300 mM NaCl Dig-wash buffer, and pA-Tn5 tagmentation was performed 1:250 in Dig-300 buffer (0.01% digitonin, 20 mM HEPES pH 7.5, 300 mM NaCl, 0.5 mM spermidine in nuclease-free water with a Roche Complete Protease Inhibitor EDTA-free tablet). Library preparation was then performed by subjecting a total of 561ug of gDNA from the reference sample and 5.84ug (across 29 and 6 PCR plates of 100ul reactions, respectively) from experimental samples to 28 PCR cycles with NEBNext Ultra II Q5 Master Mix (New England Biolabs), using custom indexed primers (Table 2) for the simultaneous amplification of the lentiviral backbone and addition of Illumina adapter sequences. PCR products were then purified by running in 1% agarose gels followed by gel extraction using the Qiaquick Gel Extraction Kit (Qiagen) as per the manufacturer’s instructions.  50ng of DNA was concentrated via ethanol precipitation with 300mM sodium acetate, 1µL glycogen and 2.5x ethanol and resuspending in 20µL of nuclease-free water. DNA was run on 1% agarose gels cast in 1.5mm Mini-PROTEAN casettes (Bio-Rad), stained with SYBR-Gold and the DNA fragment smear of 400-1000bp was dissected from the gel. Gel slices were immersed in 500µL gel-extraction buffer (10mM Tris pH 8.0, 1mM EDTA, 0.02% SDS) and rotated at 4C overnight. The gel slices and buffer were loaded into Spin-X columns (Costar, CLS8160) and span at max speed for 10 minutes at 4C. The eluted DNA containing buffer was ethanol precipitated as before and resuspended in 50µL nuclease free water. DNA was then subjected to library preparation via the NEBNext Ultra-II DNA library prep kit (NEB, E7645L) using a 1 in 10 adapter dilution and 7 PCR cycles.

text: CSB-/-

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: eye

characteristic: organism part

text: Homo sapiens


characteristic: ENA first public

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: aquatic

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR7163067 of study ERP132647.

text: aquaculture

characteristic: environmental medium

text: South Korea

text: metagenome-assembled genome

characteristic: investigation type

text: aquaculture metagenome

text: marine

text: aquaculture metagenome

text: uncultured Cafeteriaceae

text: whole metagenomic sequencing for marine aquaculture microbiomes collected from Jindo, Tongyeong, and Wando, Korea

characteristic: sample derived from

text: uncultured Cafeteriaceae

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR7163067_metabat2_27

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: default

text: aquatic

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: description

text: aquaculture

text: South Korea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquaculture metagenome

text: marine

characteristic: local environmental context

text: aquaculture metagenome

characteristic: metagenomic source

text: Hypocreales sp.

characteristic: organism

characteristic: project name

text: Hypocreales sp.

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: ERR7163067_concoct_90


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: USA

characteristic: country

text: Matanuska-Sustina Borough

characteristic: county

text: Aerial parts epiphyte microbiome collected from R. rosea in Alaska

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: anthropogenic terrestrial biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:PA:Miller

text: USA

text: Actaea racemosa

characteristic: host scientific name

text: plant

text: not collected

text: cm

text: Actaea

characteristic: hostgenus

text: A. racemosa

characteristic: hostspecies

characteristic: label

characteristic: latitude

characteristic: longitude

text: plant metagenome

text: UIC-COP

text: FALSE

text: Root

characteristic: plantpart

text: root endophyte

text: root endophyte

text: Endophyte

characteristic: sampletype

text: plant metagenome

text: Rothrock State Forest

characteristic: site

text: Pennsylvania

characteristic: state

text: Fungal Microbiome of Medicinal Plants

text: Miller township

characteristic: town


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: collection date

text: USA

text: Matanuska-Sustina Borough

text: Aerial parts epiphyte microbiome collected from R. integrifolia in Alaska

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:PA:Miller

text: USA

characteristic: geographic location (country and/or sea)

text: Actaea racemosa

text: plant

text: not collected

text: cm

text: Actaea

text: A. racemosa

text: plant metagenome

characteristic: organism

text: UIC-COP

text: FALSE

text: Root

text: root endophyte

text: root endophyte

text: Endophyte

text: plant metagenome

text: Rothrock State Forest

text: Pennsylvania

characteristic: title

text: Fungal Microbiome of Medicinal Plants

text: Miller township


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: USA

characteristic: country

text: Matanuska-Sustina Borough

characteristic: county

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:PA:Miller

text: USA

text: Sanguinaria canadensis

characteristic: host scientific name

text: plant

text: not collected

text: cm

text: Sanguinaria

characteristic: hostgenus

text: S. canadensis

characteristic: hostspecies

text: plant metagenome

text: UIC-COP

text: FALSE

text: Root

text: root endophyte

text: root endophyte

text: Endophyte

text: plant metagenome

text: Rothrock State Forest

text: Pennsylvania

text: Fungal Microbiome of Medicinal Plants

text: Miller township


text: UCSDMI

text: public

text: USA

text: Matanuska-Sustina Borough

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:PA:Miller

text: USA

text: Dioscorea villosa

text: plant

text: not collected

text: cm

text: Dioscorea

text: D. villosa

characteristic: label

characteristic: latitude

characteristic: longitude

text: plant metagenome

text: UIC-COP

text: FALSE

text: Root

characteristic: plantpart

text: root endophyte

text: root endophyte

text: Endophyte

characteristic: sampletype

text: plant metagenome

text: Rothrock State Forest

characteristic: site

text: Pennsylvania

characteristic: state

text: Fungal Microbiome of Medicinal Plants

text: Miller township

characteristic: town


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: collection date

text: USA

text: Matanuska-Sustina Borough

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Anchor Point

text: USA

characteristic: geographic location (country and/or sea)

text: Rhodiola rosea

text: plant

text: not collected

text: cm

text: Rhodiola

text: R. rosea

text: plant metagenome

characteristic: organism

text: UIC-COP

text: FALSE

text: Root

text: root endophyte

text: root endophyte

text: Endophyte

text: plant metagenome

text: Stosh's farm

text: Alaska

text: Fungal Microbiome of Medicinal Plants

characteristic: title

text: Anchor Point


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: USA

characteristic: country

text: Nome Census Area

characteristic: county

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: shrubland biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Nome River Valley

text: USA

text: Rhodiola integrifolia

characteristic: host scientific name

text: plant

text: not collected

text: cm

text: Rhodiola

characteristic: hostgenus

text: R. integrifolia

characteristic: hostspecies

text: plant metagenome

text: UIC-COP

text: FALSE

text: Root

text: root endophyte

text: root endophyte

text: Endophyte

text: plant metagenome

text: Beam Road Mile 19

text: Alaska

text: Fungal Microbiome of Medicinal Plants

text: Nome River Valley


text: UCSDMI

text: public

text: USA

text: Nome Census Area

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: anthropogenic terrestrial biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Nome River Valley

text: USA

text: Rhodiola integrifolia

text: plant

text: not collected

text: cm

text: Rhodiola

text: R. integrifolia

characteristic: label

characteristic: latitude

characteristic: longitude

text: plant metagenome

text: UIC-COP

text: FALSE

text: Root

characteristic: plantpart

text: root endophyte

text: root endophyte

text: Endophyte

characteristic: sampletype

text: plant metagenome

text: Beam Road Mile 26

characteristic: site

text: Alaska

characteristic: state

text: Fungal Microbiome of Medicinal Plants

text: Nome River Valley

characteristic: town


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: collection date

text: USA

text: Nome Census Area

text: Stem endophyte microbiome collected from R. rosea in Alaska

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant corpus (non-saline)

text: anthropogenic terrestrial biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Palmer

text: USA

characteristic: geographic location (country and/or sea)

text: Rhodiola rosea

text: plant

text: not collected

text: cm

text: Rhodiola

text: R. rosea

text: plant metagenome

characteristic: organism

text: UIC-COP

text: FALSE

text: Aerial parts

text: plant epiphyll

text: aerial parts epiphyte

text: Epiphyll

text: plant metagenome

text: Cooperative Extension Service UAF

text: Alaska

text: Fungal Microbiome of Medicinal Plants

characteristic: title

text: Palmer


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: USA

characteristic: country

text: Kenai Peninsula Borough

characteristic: county

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: anthropogenic terrestrial biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Nome River Valley

text: USA

text: Rhodiola rosea

characteristic: host scientific name

text: plant

text: not collected

text: cm

text: Rhodiola

characteristic: hostgenus

text: R. rosea

characteristic: hostspecies

text: plant metagenome

text: UIC-COP

text: FALSE

text: Root

text: root endophyte

text: root endophyte

text: Endophyte

text: plant metagenome

text: Beam Road Mile 19

text: Alaska

text: Fungal Microbiome of Medicinal Plants

text: Nome River Valley


text: UCSDMI

text: public

text: USA

text: Kenai Peninsula Borough

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: anthropogenic terrestrial biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Anchor Point

text: USA

text: Rhodiola rosea

text: plant

text: not collected

text: cm

text: Rhodiola

text: R. rosea

characteristic: label

characteristic: latitude

characteristic: longitude

text: plant metagenome

text: UIC-COP

text: FALSE

text: Root

characteristic: plantpart

text: root endophyte

text: root endophyte

text: Endophyte

characteristic: sampletype

text: plant metagenome

text: Anchor Point Nursery

characteristic: site

text: Alaska

characteristic: state

text: Fungal Microbiome of Medicinal Plants

text: Anchor Point

characteristic: town


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: collection date

text: USA

text: Kenai Peninsula Borough

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: anthropogenic terrestrial biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Palmer

text: USA

characteristic: geographic location (country and/or sea)

text: Rhodiola rosea

text: soil

text: not collected

text: cm

text: Rhodiola

text: R. rosea

text: soil metagenome

characteristic: organism

text: UIC-COP

text: FALSE

text: Soil

text: soil

text: soil

text: Soil Control

text: soil metagenome

text: Cooperative Extension Service UAF

text: Alaska

characteristic: title

text: Fungal Microbiome of Medicinal Plants

text: Palmer


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: USA

characteristic: country

text: Kenai Peninsula Borough

characteristic: county

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant surface (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Palmer

text: USA

text: Rhodiola rosea

characteristic: host scientific name

text: soil

text: not collected

text: cm

text: Rhodiola

characteristic: hostgenus

text: R. rosea

characteristic: hostspecies

text: soil metagenome

text: UIC-COP

text: FALSE

text: Soil

text: soil

text: soil

text: Soil Control

text: soil metagenome

text: Cooperative Extension Service UAF

text: Alaska

text: Fungal Microbiome of Medicinal Plants

text: Palmer


text: UCSDMI

text: public

text: USA

text: Matanuska-Sustina Borough

text: Leaf endophyte microbiome collected from R. rosea in Alaska

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant corpus (non-saline)

text: anthropogenic terrestrial biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Talkeetna Mountains

text: USA

text: Rhodiola integrifolia

text: plant

text: not collected

text: cm

text: Rhodiola

text: R. integrifolia

characteristic: label

characteristic: latitude

characteristic: longitude

text: plant metagenome

text: UIC-COP

text: FALSE

text: Aerial parts

characteristic: plantpart

text: plant epiphyll

text: aerial parts epiphyte

text: Epiphyll

characteristic: sampletype

text: plant metagenome

text: Hatcher Pass Public Use Area

characteristic: site

text: Alaska

characteristic: state

text: Fungal Microbiome of Medicinal Plants

text: Talkeetna mountains

characteristic: town


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: collection date

text: USA

text: Matanuska-Sustina Borough

text: Leaf endophyte microbiome collected from R. integrifolia in Alaska

characteristic: description

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant corpus (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Talkeetna Mountains

text: USA

characteristic: geographic location (country and/or sea)

text: Rhodiola integrifolia

text: plant

text: not collected

text: cm

text: Rhodiola

text: R. integrifolia

text: plant metagenome

characteristic: organism

text: UIC-COP

text: FALSE

text: Aerial parts

text: plant epiphyll

text: aerial parts epiphyte

text: Epiphyll

text: plant metagenome

text: Hatcher Pass Public Use Area

text: Alaska

characteristic: title

text: Fungal Microbiome of Medicinal Plants

text: Talkeetna mountains


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: USA

characteristic: country

text: Matanuska-Sustina Borough

characteristic: county

text: TRUE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant corpus (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Talkeetna Mountains

text: USA

text: Rhodiola integrifolia

characteristic: host scientific name

text: plant

text: not collected

text: cm

text: Rhodiola

characteristic: hostgenus

text: R. integrifolia

characteristic: hostspecies

text: plant metagenome

text: UIC-COP

text: FALSE

text: Aerial parts

text: plant epiphyll

text: aerial parts epiphyte

text: Epiphyll

text: plant metagenome

text: Hatcher Pass Public Use Area

text: Alaska

text: Fungal Microbiome of Medicinal Plants

text: Talkeetna mountains


text: UCSDMI

text: public

text: USA

text: Matanuska-Sustina Borough

text: TRUE

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant corpus (non-saline)

text: forest biome

text: plant-associated habitat

text: organic material/plant

text: plant-associated

text: USA:AK:Sanchef Island

text: USA

text: Rhodiola integrifolia

text: plant

text: not collected

text: cm

text: Rhodiola

text: R. integrifolia

characteristic: label

characteristic: latitude

characteristic: longitude

text: plant metagenome

text: UIC-COP

text: FALSE

text: Aerial parts

characteristic: plantpart

text: plant epiphyll

text: aerial parts epiphyte

text: Epiphyll

characteristic: sampletype

text: plant metagenome

text: Native Village of Shishmaref

characteristic: site

text: Alaska

characteristic: state

text: Fungal Microbiome of Medicinal Plants

text: Sanchef Island

characteristic: town