status: PUBLIC

text: Stomach

tag: attribute

characteristic: ArrayExpress-PHENOTYPE

text: unknown

characteristic: ArrayExpress-SEX

text: Canis familiaris

characteristic: ArrayExpress-SPECIES

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Unknown

characteristic: GENDER

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Stomach

characteristic: PHENOTYPE

characteristic: SRA accession

characteristic: Submitter Id

text: dog

characteristic: common name

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

characteristic: title


text: Liver

text: unknown

text: Canis familiaris

text: Unknown

text: SC

text: public

text: Liver

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Pancreas

text: unknown

text: Canis familiaris

text: Unknown

text: SC

text: public

text: Pancreas

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Testis

text: unknown

text: Canis familiaris

text: Unknown

text: SC

text: public

text: Testis

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Lymph node

text: unknown

text: Canis familiaris

text: Unknown

text: SC

text: public

text: Lymph node

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Adrenal gland

text: unknown

text: Canis familiaris

text: Unknown

text: SC

text: public

text: Adrenal gland

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Bladder

text: unknown

text: Canis familiaris

text: Unknown

text: SC

text: public

text: Bladder

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Brain

text: unknown

text: Canis familiaris

text: Unknown

text: SC

text: public

text: Brain

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Skin

text: female

text: Canis familiaris

text: Female

text: SC

text: public

text: Skin

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Skin

text: male

text: Canis familiaris

text: Male

text: SC

text: public

text: Skin

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Muscle

text: female

text: Canis familiaris

text: Female

text: SC

text: public

text: Muscle

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Testis

text: male

text: Canis familiaris

text: Male

text: SC

text: public

text: Testis

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Muscle

text: male

text: Canis familiaris

text: Male

text: SC

text: public

text: Muscle

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Lymph node

text: female

text: Canis familiaris

text: Female

text: SC

text: public

text: Lymph node

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Burkholderia pseudomallei

text: SC

text: public

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei


text: unknown

text: unknown

text: Human

text: Unknown

text: SC

text: public

text: unknown

text: human

text: Homo sapiens

text: Homo sapiens


text: Schistosoma mansoni

text: SC

text: public

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Schistosoma mansoni


text: DTU-GE

text: public

text: DTU-GE

characteristic: broker name

characteristic: collection date

text: mixed L. monocytogenes planktonic communities (Undiluted_community)

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA first public

text: DTU-GE

text: public

text: DTU-GE

text: mixed L. monocytogenes planktonic communities (Negative_control)

text: Denmark

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

text: DTU-GE

text: public

text: DTU-GE

text: mixed L. monocytogenes planktonic communities (Treatment with PAA)

text: Denmark

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: mixed L. monocytogenes planktonic communities (Treatment with BC)

text: Denmark

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: collected from animal

text: Slovenia

text: Listeria monocytogenes

text: Listeria monocytogenes


text: DTU-GE

text: public

text: DTU-GE

text: Ready to eat meat

text: Slovenia

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: 105280:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

tag: Namespace:Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

unit: m

characteristic: depth

text: 18S meta-barcoding Submesoscale Filament Fram Strait 2017

text: particulate organic matter [ENVO:04000012]

characteristic: environmental medium

text: water

characteristic: environmental package

text: Arctic Ocean

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

text: 18S Community Profiles Fram Strait Submesoscale Filament 2017

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105279:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105278:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: depth

characteristic: environmental medium

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105277:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105276:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105275:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105274:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105273:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105272:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105271:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105270:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105269:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105268:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105267:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105266:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: 18S meta-barcoding Submesoscale Filament Fram Strait 2017

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105265:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: particulate organic matter [ENVO:04000012]

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

text: 18S Community Profiles Fram Strait Submesoscale Filament 2017

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

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text: water

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

text: public

text: 105264:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

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characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

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characteristic: description

characteristic: environmental medium

text: water

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text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


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characteristic: SRA accession

text: 105263:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

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characteristic: broker name

text: water

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text: Arctic Ocean

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text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

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text: Illumina MiSeq

text: true

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105262:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

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characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

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text: water

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text: mimarks-survey

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characteristic: broker name

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text: water

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characteristic: organism

text: marine metagenome

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characteristic: title

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text: water

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text: Fram Strait

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characteristic: investigation type

text: microbial community [PCO:1000004]

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text: Illumina MiSeq

text: true

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characteristic: broker name

text: water

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text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

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text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

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text: water

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characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105258:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

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text: GFBIO

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


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characteristic: SRA accession

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characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

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text: Illumina MiSeq

text: true

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characteristic: ENA first public

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characteristic: External Id

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text: 105256:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

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characteristic: INSDC status

characteristic: SRA accession

text: 105255:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

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text: 105254:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

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text: GFBIO

characteristic: collection date

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characteristic: geographic location (latitude)

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text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

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characteristic: broker name

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characteristic: sequencing method

text: true

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characteristic: ENA-CHECKLIST

characteristic: External Id

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text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105216:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105215:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105214:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105213:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105212:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105211:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: 105210:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: 18S meta-barcoding Submesoscale Filament Fram Strait 2017

characteristic: description

characteristic: environmental medium

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 105209:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

characteristic: Submitter Id

text: water column [ENVO:06105011]

text: GFBIO

characteristic: broker name

text: particulate organic matter [ENVO:04000012]

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fram Strait

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: microbial community [PCO:1000004]

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

text: public

text: 105208:773cb4c6-76d8-40fb-89c2-5f2d2939a8ce

text: water column [ENVO:06105011]

characteristic: broad-scale environmental context

text: GFBIO

characteristic: collection date

characteristic: depth

text: water

text: Arctic Ocean

text: Fram Strait

text: mimarks-survey

text: microbial community [PCO:1000004]

characteristic: local environmental context

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


Kp52,145R TC (DHA-1)-Hcol2

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Kp52,145R TC (DHA-1)-Hcol2

tag: Namespace:Institut d'Investigacio Sanitaria de Palma

characteristic: Submitter Id

text: not provided

text: Klebsiella pneumoniae from HUSE

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens not provided

characteristic: host scientific name

text: not provided

characteristic: isolate

text: not provided

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Kp52,145R TC (DHA-1)-Hcol2

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: National Veterinary Institute

text: public

tag: Namespace:National Veterinary Institute

characteristic: collection date

text: Isolate from subcutaneous tissue of chicken inoculated with strain A18.

text: Sweden

text: diseased

text: Gallus domesticus

text: Subcutaneous tissue

text: Escherichia coli

text: Escherichia coli

characteristic: serovar


text: National Veterinary Institute

characteristic: INSDC center name

text: public

text: Isolate from subcutaneous tissue of chicken inoculated with strain B11.

text: Sweden

text: diseased

text: Gallus domesticus

text: Subcutaneous tissue

text: Escherichia coli

text: Escherichia coli


text: National Veterinary Institute

characteristic: INSDC last update

text: public

text: Isolate from blood of chicken inoculated with strain B11.

text: Sweden

text: diseased

text: Gallus domesticus

text: Blood

text: Escherichia coli

text: Escherichia coli


text: National Veterinary Institute

text: public

characteristic: INSDC status

text: Inoculation strain ECB11 after freezing showing light grey colony morphology.

text: Sweden

text: not applicable

text: Not applicable

text: Culture

text: Escherichia coli

text: Escherichia coli


text: National Veterinary Institute

text: public

characteristic: SRA accession

text: Inoculation strain ECB11 after freezing showing dark grey colony morphology.

text: Sweden

text: not applicable

text: Not applicable

text: Culture

text: Escherichia coli

text: Escherichia coli


text: National Veterinary Institute

text: public

characteristic: Submitter Id

text: Inoculation strain ECB11.

text: Sweden

text: diseased

text: Gallus domesticus

text: Subcutaneous tissue

text: Escherichia coli

text: Escherichia coli


text: National Veterinary Institute

text: public

text: Inoculation strain ECA18.

characteristic: description

text: Sweden

text: diseased

text: Gallus domesticus

text: Subcutaneous tissue

text: Escherichia coli

text: Escherichia coli


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: restricted access

text: Streptococcus pneumoniae

characteristic: common name

text: restricted access

characteristic: geographic location (country and/or sea)

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Pf bioinfo genotoul INRAE toulouse

text: public

tag: Namespace:Pf bioinfo genotoul INRAE toulouse

text: wastewater treatment plant

characteristic: broad-scale environmental context

text: Biofilm from bioreactors exposed to norfloxacin (2.5 �g/L).

text: biofilm

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: bioreactor

characteristic: local environmental context

text: biofilm metagenome

text: ATB_Biofilm - N�2020/1/183

characteristic: project name

text: biofilm metagenome

text: V3-V4 region of the 16S rRNA gene

characteristic: target gene


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Pf bioinfo genotoul INRAE toulouse

text: public

text: wastewater treatment plant

characteristic: collection date

text: Biofilm from bioreactors exposed to ciprofloxacin (2.5 �g/L).

text: biofilm

text: France

text: bioreactor

text: biofilm metagenome

characteristic: organism

text: ATB_Biofilm - N�2020/1/184

text: biofilm metagenome

text: V3-V4 region of the 16S rRNA gene

characteristic: title


text: Pf bioinfo genotoul INRAE toulouse

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: wastewater treatment plant

characteristic: description

text: biofilm

text: France

text: bioreactor

text: biofilm metagenome

text: ATB_Biofilm - N�2020/1/185

text: biofilm metagenome

text: V3-V4 region of the 16S rRNA gene


text: Pf bioinfo genotoul INRAE toulouse

text: public

text: wastewater treatment plant

characteristic: broad-scale environmental context

text: Biofilm from bioreactors exposed to ciprofloxacin (5000 �g/L).

text: biofilm

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: bioreactor

text: biofilm metagenome

text: ATB_Biofilm - N�2020/1/186

text: biofilm metagenome

text: V3-V4 region of the 16S rRNA gene


text: Pf bioinfo genotoul INRAE toulouse

text: public

text: wastewater treatment plant

text: Biofilm from bioreactors exposed to norfloxacin (5000 �g/L).

text: biofilm

text: France

characteristic: geographic location (longitude)

text: bioreactor

characteristic: local environmental context

text: biofilm metagenome

text: ATB_Biofilm - N�2020/1/187

characteristic: project name

text: biofilm metagenome

text: V3-V4 region of the 16S rRNA gene

characteristic: target gene


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Pf bioinfo genotoul INRAE toulouse

text: public

text: wastewater treatment plant

characteristic: collection date

text: biofilm

text: France

text: bioreactor

text: biofilm metagenome

text: ATB_Biofilm - N�2020/1/188

text: biofilm metagenome

text: V3-V4 region of the 16S rRNA gene


text: Pf bioinfo genotoul INRAE toulouse

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: wastewater treatment plant

text: biofilm

text: France

text: bioreactor

text: biofilm metagenome

characteristic: organism

text: ATB_Biofilm - N�2020/1/189

text: biofilm metagenome

text: V3-V4 region of the 16S rRNA gene

characteristic: title


text: Pf bioinfo genotoul INRAE toulouse

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: wastewater treatment plant

text: Wastewater from sewers collected at an entrance of a wastewater treatment plant.

characteristic: description

text: biofilm

text: France

text: bioreactor

text: wastewater metagenome

text: ATB_Biofilm - N�2020/1/190

text: wastewater metagenome

text: V3-V4 region of the 16S rRNA gene


text: Pf bioinfo genotoul INRAE toulouse

text: public

text: wastewater treatment plant

characteristic: broad-scale environmental context

text: biofilm

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: bioreactor

text: wastewater metagenome

text: ATB_Biofilm - N�2020/1/191

text: wastewater metagenome

text: V3-V4 region of the 16S rRNA gene


text: QBiC

text: public

text: University Hospital Tuebingen

text: house mouse

characteristic: common name

text: Liver, PH, shMKK4, 48 hours, mouse 1

text: Germany

text: Mus musculus

text: Mus musculus

text: pCaggs-rtTA3 x TRE GFP shMKK4

characteristic: strain

text: Liver


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: QBiC

text: public

text: University Hospital Tuebingen

text: house mouse

text: Liver, PH, shMKK4, 48 hours, mouse 2

text: Germany

text: Mus musculus

text: Mus musculus

text: pCaggs-rtTA3 x TRE GFP shMKK4

text: Liver


text: QBiC

text: public

text: University Hospital Tuebingen

characteristic: collection date

text: house mouse

text: Liver, PH, shMKK4, 48 hours, mouse 3

text: Germany

text: Mus musculus

text: Mus musculus

text: pCaggs-rtTA3 x TRE GFP shMKK4

text: Liver


text: QBiC

characteristic: INSDC center name

text: public

text: University Hospital Tuebingen

text: house mouse

text: Liver, PH, HRX215, 48 hours, mouse 1

text: Germany

text: Mus musculus

text: Mus musculus

text: C57BL6/N wildtype

text: Liver


text: QBiC

text: public

text: University Hospital Tuebingen

text: house mouse

text: Liver, PH, HRX215, 48 hours, mouse 2

text: Germany

text: Mus musculus

text: Mus musculus

text: C57BL6/N wildtype

text: Liver


text: QBiC

text: public

text: University Hospital Tuebingen

text: house mouse

text: Liver, PH, HRX215, 48 hours, mouse 3

text: Germany

text: Mus musculus

text: Mus musculus

text: C57BL6/N wildtype

text: Liver


text: Genentech

text: public

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: Protocols: Cultured cell lines were spun into cell pellets were snap frozen. Snap frozen cell pellets from cultured cell lines were directly lysed with RLT lysis buffer of the Rneasy Plus Mini kit (Qiagen).  Total RNA was quantified with the Qubit RNA HS Assay Kit (Thermo Fisher Scientific) and quality was assessed using RNA ScreenTape on a TapeStation 4200 (Agilent Technologies). For sequencing library generation, the TruseqStranded mRNA kit (Illumina) was used with an input of 100-1000 nanograms of total RNA. Libraries were quantified with Qubit dsDNA HS Assay Kit (Thermo Fisher Scientific) and the average library size was determined using D1000 ScreenTape on TapeStation 4200 (Agilent Technologies).

text: Control

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Mus musculus


E-MTAB-13815:B16-F10_Trex1 KO_1

text: Genentech

text: public

characteristic: INSDC status

text: E-MTAB-13815:B16-F10_Trex1 KO_1

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: B16-F10_Trex1 KO_1

characteristic: title


E-MTAB-13815:B16-F10_Trex1 KO_2

text: Genentech

text: public

characteristic: SRA accession

text: E-MTAB-13815:B16-F10_Trex1 KO_2

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

characteristic: description

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: B16-F10_Trex1 KO_2


E-MTAB-13815:B16-F10_Trex1 KO_3

text: Genentech

text: public

text: E-MTAB-13815:B16-F10_Trex1 KO_3

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: B16-F10_Trex1 KO_3


E-MTAB-13815:CT26.WT_Trex1 KO_NTC_1

text: Genentech

text: public

text: E-MTAB-13815:CT26.WT_Trex1 KO_NTC_1

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: CT26.WT_Trex1 KO_NTC_1


E-MTAB-13815:CT26.WT_Trex1 KO_NTC_2

text: Genentech

text: public

text: E-MTAB-13815:CT26.WT_Trex1 KO_NTC_2

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: CT26.WT_Trex1 KO_NTC_2


E-MTAB-13815:CT26.WT_Trex1 KO_NTC_3

text: Genentech

text: public

text: E-MTAB-13815:CT26.WT_Trex1 KO_NTC_3

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: CT26.WT_Trex1 KO_NTC_3


E-MTAB-13815:EMT6_Trex1 KO_1

text: Genentech

text: public

text: E-MTAB-13815:EMT6_Trex1 KO_1

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: EMT6_Trex1 KO_1


E-MTAB-13815:EMT6_Trex1 KO_2

text: Genentech

text: public

text: E-MTAB-13815:EMT6_Trex1 KO_2

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: EMT6_Trex1 KO_2


E-MTAB-13815:EMT6_Trex1 KO_3

text: Genentech

text: public

text: E-MTAB-13815:EMT6_Trex1 KO_3

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: EMT6_Trex1 KO_3


E-MTAB-13815:EO771_Trex1 KO_1

text: Genentech

text: public

text: E-MTAB-13815:EO771_Trex1 KO_1

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: EO771_Trex1 KO_1


E-MTAB-13815:EO771_Trex1 KO_2

text: Genentech

text: public

text: E-MTAB-13815:EO771_Trex1 KO_2

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: EO771_Trex1 KO_2


E-MTAB-13815:EO771_Trex1 KO_3

text: Genentech

text: public

text: E-MTAB-13815:EO771_Trex1 KO_3

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: EO771_Trex1 KO_3


E-MTAB-13815:MC-38_Trex1 KO_1

text: Genentech

text: public

text: E-MTAB-13815:MC-38_Trex1 KO_1

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: MC-38_Trex1 KO_1


E-MTAB-13815:MC-38_Trex1 KO_2

text: Genentech

text: public

text: E-MTAB-13815:MC-38_Trex1 KO_2

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: MC-38_Trex1 KO_2


E-MTAB-13815:MC-38_Trex1 KO_3

text: Genentech

text: public

text: E-MTAB-13815:MC-38_Trex1 KO_3

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: MC-38_Trex1 KO_3


text: Genentech

text: public

text: ArrayExpress

text: not collected

text: house mouse

text: Protocols: Tumors were collected 10 days after tumor inoculation. Tumors were weighed and homogenized using a tumor dissociation kit (Miltenyi, 130-096-730) with a GentleMACS (Miltenyi, program TDK1). Cell suspensions were incubated in Fc receptor block (BD Biosciences, 2.4G2, #553142, RRID:AB_394657) and fixable viability dye (Invitrogen, 65-0865-14) in PBS. Cells were labeled with surface antigens for 20-30min at 4°C. For transcription factor staining, cells were fixed with FoxP3 Fixation Buffer (005523, eBioscience) for 30 minutes in the dark at room temperature. For cytoplasmic protein labeling, cells were fixed with Fixation buffer (554714, BD Biosciences) for 20 min at 4°C. Then, cells were stained with intracellular antibodies for 30min at 4°C. The following antibodies were used: BST2 (clone 927, BioLegend, RRID:AB_2562477), CD4 (clone RM4-5, BD Biosciences, RRID:AB_2870166), CD8 (clone KT15, MBL, RRID:AB_10597265), CD11b (clone M1/70, BD Biosciences, RRID:AB_2874105), CD11c (clone HL3, BD Biosciences, RRID:AB_2738580), CD19 (clone 6D5, BioLegend, RRID:AB_11218994), CD44 (clone IM7, BD Biosciences, RRID:AB_2870671), CD45 (clone 30-F11, BD Biosciences, RRID:AB_2870247), CD49b (clone DX5, BD Biosciences, RRID:AB_11153857), CD90.2 (clone 30-H12, BioLegend, RRID:AB_493725), F4/80 (clone BM8, BioLegend, RRID:AB_2564588), GZMB (clone GB12, Invitrogen, RRID:AB_10373420), LY6C (clone HK1.4, BioLegend, RRID:AB_2562351), LY6G (clone 1A8, BioLegend, RRID:AB_2566317), MHC-ll (clone M5/114.15.2, BD Biosciences, RRID:AB_2738192), and SCA-1 (clone D7, BD Biosciences, RRID:AB_2871229). Data were acquired on a Symphony flow cytometer (BD Biosciences) or Cytek Aurora (Cytek Bioscience) and analyzed using FlowJo software (FlowJo LLC, RRID:SCR_008520).   For scRNA-seq, cells were incubated with Fc receptor block and labeled with TotalSeq-C hashtag antibodies (clone M1/42;30-F11, BioLegend, hashtag 1-12) together with the following surface markers: CD45 (clone 30-F11, BD Biosciences, RRID:AB_2870247), CD90.2 (clone 30-H12, BioLegend, RRID:AB_493725), CD31 (clone MEC13.3, BioLegend, RRID:AB_2572181), and PDGFRa (APA5, BioLegend, RRID:AB_2043969). Subsequently, cells were labeled with calcein blue (Invitrogen) and 7-AAD (BioLegend).  Samples were sorted for tumor cells (CD45-Pdgfra-CD31-) with a FACSAria instrument (BD Biosciences).   Snap frozen mouse tissues were homogenized with nuclease free hard tissue homogenizing mix 2.8 mm ceramic beads (OMNI International) by using a Bead Mill Homogenizer (OMNI International) in RLT buffer. Tissue homogenates were centrifuged at 13,000 rpm for 15 min at 4°C and the supernatants were proceeded for RNA isolation with RNeasy Plus Mini kit (Qiagen). Total RNA was quantified with the Qubit RNA HS Assay Kit (Thermo Fisher Scientific) and quality was assessed using RNA ScreenTape on a TapeStation 4200 (Agilent Technologies). For sequencing library generation, the TruseqStranded mRNA kit (Illumina) was used with an input of 100-1000 nanograms of total RNA. Libraries were quantified with Qubit dsDNA HS Assay Kit (Thermo Fisher Scientific) and the average library size was determined using D1000 ScreenTape on TapeStation 4200 (Agilent Technologies).

text: Control

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: balb/c


text: Genentech

text: public

text: ArrayExpress

text: not collected

text: house mouse

characteristic: common name

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: balb/c


text: Genentech

text: public

text: ArrayExpress

text: not collected

text: house mouse

text: Protocols: Tumors were collected 10 days after tumor inoculation for scRNA-seq. Tumors were weighed and homogenized using a tumor dissociation kit (Miltenyi, 130-096-730) with a GentleMACS (Miltenyi, program TDK1). Cell suspensions were incubated in Fc receptor block (BD Biosciences, 2.4G2, #553142, RRID:AB_394657) and fixable viability dye (Invitrogen, 65-0865-14) in PBS. Cells were labeled with surface antigens for 20-30min at 4°C. For transcription factor staining, cells were fixed with FoxP3 Fixation Buffer (005523, eBioscience) for 30 minutes in the dark at room temperature. For cytoplasmic protein labeling, cells were fixed with Fixation buffer (554714, BD Biosciences) for 20 min at 4°C. Then, cells were stained with intracellular antibodies for 30min at 4°C. The following antibodies were used: BST2 (clone 927, BioLegend, RRID:AB_2562477), CD4 (clone RM4-5, BD Biosciences, RRID:AB_2870166), CD8 (clone KT15, MBL, RRID:AB_10597265), CD11b (clone M1/70, BD Biosciences, RRID:AB_2874105), CD11c (clone HL3, BD Biosciences, RRID:AB_2738580), CD19 (clone 6D5, BioLegend, RRID:AB_11218994), CD44 (clone IM7, BD Biosciences, RRID:AB_2870671), CD45 (clone 30-F11, BD Biosciences, RRID:AB_2870247), CD49b (clone DX5, BD Biosciences, RRID:AB_11153857), CD90.2 (clone 30-H12, BioLegend, RRID:AB_493725), F4/80 (clone BM8, BioLegend, RRID:AB_2564588), GZMB (clone GB12, Invitrogen, RRID:AB_10373420), LY6C (clone HK1.4, BioLegend, RRID:AB_2562351), LY6G (clone 1A8, BioLegend, RRID:AB_2566317), MHC-ll (clone M5/114.15.2, BD Biosciences, RRID:AB_2738192), and SCA-1 (clone D7, BD Biosciences, RRID:AB_2871229). Data were acquired on a Symphony flow cytometer (BD Biosciences) or Cytek Aurora (Cytek Bioscience) and analyzed using FlowJo software (FlowJo LLC, RRID:SCR_008520).   For scRNA-seq, cells were incubated with Fc receptor block and labeled with TotalSeq-C hashtag antibodies (clone M1/42;30-F11, BioLegend, hashtag 1-12) together with the following surface markers: CD45 (clone 30-F11, BD Biosciences, RRID:AB_2870247), CD90.2 (clone 30-H12, BioLegend, RRID:AB_493725), CD31 (clone MEC13.3, BioLegend, RRID:AB_2572181), and PDGFRa (APA5, BioLegend, RRID:AB_2043969). Subsequently, cells were labeled with calcein blue (Invitrogen) and 7-AAD (BioLegend).  Samples were sorted into T cells (CD45+CD90.2+) and non-T immune cells (CD45+CD90.2- ) with a FACSAria instrument (BD Biosciences).  Same number of T cells and non-T immune cells from each animal per each population were pooled and duplicated for loading into a Chromium single cell sorting system (10X Genomics).   Using the 10x Genomics Chromium Single Cell 5′ V2 Reagent Kit and Chromium Chip K Single Cell Kit, 4 samples of sorted single cell suspension were loaded onto the Chromium Controller. Each sample was loaded into two channels on the chip, targeting for 30,000 cell recovery per channel, effectively recovering 60,000 cells per sample. Cells from all samples were over 90% viable, with concentrations ranging from 1430 to 1770 cells/mL. GEMs were generated and cells were lysed, mRNA were barcoded and underwent reverse transcription to produce full-length cDNA. cDNA was amplified with 13 PCR cycles. Two types of libraries were generated (Gene Expression and Cell Surface Protein) according to manufacturer instructions.

text: Control

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female


text: Genentech

text: public

text: ArrayExpress

text: T cell

text: not collected

text: house mouse

text: Control

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female


text: Genentech

text: public

text: ArrayExpress

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female


text: Genentech

text: public

text: ArrayExpress

text: T cell

text: not collected

text: house mouse

text: Trex1 KO

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female


Rhabditoides inermis DNA (RS5171)

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: Rhabditoides inermis DNA (RS5171)

text: Genome of mixed-stage nematodes and their microbiota, the correct strain number is RS6171. The strain was sequenced as RS5171

text: Germany

text: Rhabditoides inermis

text: Rhabditoides inermis

text: Rhabditoides inermis DNA (RS5171)


Rhabditoides inermis DNA (Totengraeber)

text: Rhabditoides inermis DNA (Totengraeber)

text: Genome of mixed-stage nematodes and their microbiota, RS6371 (Totengraeber)

text: Germany

text: Rhabditoides inermis

text: Rhabditoides inermis

text: Rhabditoides inermis DNA (Totengraeber)


E-MTAB-13832:Sample 1

text: UOC

text: public

text: E-MTAB-13832:Sample 1

text: ArrayExpress

text: not collected

text: Protocols: Algal cells were collected by centrifugation (500 g, 5 min), lysed as described in (Gerbracht et al., 2022) Algae were pre-grown in tissue culture flasks in liquid culture medium KW (Table S1) at 30 µmol m-2 s-1 photosynthetically active radiation (PAR) (LinearZ SunLike LEDs, 5700K, Lumitronix, Hechingen) with a 14/10 h light/dark cycle for four weeks. Before the start of the light experiment, the cells were transferred to Petri dishes with fresh medium and acclimatized to higher PAR conditions (120 µmol m-2 s-1, 14/10 h) for ten days.  During the experiment the algae were exposed to the above-mentioned LEDs and the UVB Broadband TL fluorescent tube lamp (20 W, Philips, Hamburg), resulting in 120 µmol m-2 s-1 PAR, 400 µW cm-2 UVB (280-315 nm), and 150 µW cm-2 UVA (315-400 nm). While PAR was applied in the regular 14/10 h photoperiod, UVR was applied for 4 h at noon. Control cells were covered with a Makrolon® polycarbonate plate that blocks UVR < 390 nm (Busch & Hess, 2021). The experiment was run in triplicates for three days at 16 °C. After the third UVR exposure, when the the algae displayed slight extracellular pigmentation, all samples were subjected to RNA isolation. RNA isolation with the TRIzol Reagent (Thermo Fisher Scientific Inc., Waltham) according to the manufacturer’s protocol RNA samples were submitted to the Cologne Center for Genomics (CCG) (Cologne, Germany) for paired-end mRNA library preparation (Illumina TruSeq mRNA stranded, Illumina, San Diego)

text: not collected

text: Ultraviolet radiation

characteristic: irradiate

text: not applicable

text: Mesotaenium testaceovaginatum

text: Mesotaenium testaceovaginatum

text: whole organism

characteristic: organism part

text: Mesotaenium testaceovaginatum

characteristic: strain

text: Sample 1


E-MTAB-13832:Sample 2

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UOC

text: public

text: E-MTAB-13832:Sample 2

text: ArrayExpress

text: not collected

characteristic: collection date

text: not collected

text: Ultraviolet radiation

text: not applicable

text: Mesotaenium testaceovaginatum

text: Mesotaenium testaceovaginatum

text: whole organism

text: Mesotaenium testaceovaginatum

text: Sample 2


E-MTAB-13832:Sample 3

text: UOC

characteristic: INSDC center name

text: public

text: E-MTAB-13832:Sample 3

text: ArrayExpress

characteristic: broker name

text: not collected

text: not collected

text: Ultraviolet radiation

text: not applicable

text: Mesotaenium testaceovaginatum

text: Mesotaenium testaceovaginatum

text: whole organism

text: Mesotaenium testaceovaginatum

text: Sample 3


E-MTAB-13832:Sample 4

text: UOC

text: public

characteristic: INSDC status

text: E-MTAB-13832:Sample 4

text: ArrayExpress

text: not collected

text: not collected

text: Negative Control

text: not applicable

characteristic: isolate

text: Mesotaenium testaceovaginatum

text: Mesotaenium testaceovaginatum

text: whole organism

text: Mesotaenium testaceovaginatum

text: Sample 4


E-MTAB-13832:Sample 5

text: UOC

text: public

text: E-MTAB-13832:Sample 5

text: ArrayExpress

text: not collected

text: not collected

text: Negative Control

text: not applicable

text: Mesotaenium testaceovaginatum

characteristic: organism

text: Mesotaenium testaceovaginatum

text: whole organism

text: Mesotaenium testaceovaginatum

text: Sample 5

characteristic: title


E-MTAB-13832:Sample 6

text: UOC

text: public

characteristic: SRA accession

text: E-MTAB-13832:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: not collected

text: Negative Control

text: not applicable

text: Mesotaenium testaceovaginatum

text: Mesotaenium testaceovaginatum

text: whole organism

text: Mesotaenium testaceovaginatum

text: Sample 6


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Limpopo

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Eastbourne


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Senegal


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Limpopo

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: SIB

text: public

text: SIB

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Seju Kang, Ayazhan Dauletova, Camille Hablützel, Rachel McLeod, Daniela Yordanova, Jolinda de Korne, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

text: TI

text: metagenome

characteristic: investigation type

text: Lugano (TI)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/TI-ETHZ-520230520/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020230521/2023


text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: GE

text: metagenome

text: Genève (GE)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-1620230521/2023

characteristic: title


text: SIB

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

characteristic: geographic location (region and locality)

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-1920230515/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: SG

text: metagenome

characteristic: investigation type

text: Altenrhein (SG)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-1920230523/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/TI-ETHZ-520230521/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020230522/2023


text: SIB

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

text: GR

text: metagenome

text: Chur (GR)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GR-ETHZ-1720230517/2023


text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: SG

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-1920230516/2023


text: SIB

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-2520230517/2023

characteristic: title


text: SIB

text: public

text: SIB

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Lugano (TI)

characteristic: name of the sampling site

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/TI-ETHZ-520230522/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/ZH-ETHZ-1020230523/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: GR

text: metagenome

text: Chur (GR)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/GR-ETHZ-1720230518/2023


text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

text: Switzerland

text: SG

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-1920230517/2023


text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-2520230518/2023


text: SIB

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/TI-ETHZ-520230523/2023


text: SIB

text: public

text: SIB

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Seju Kang, Ayazhan Dauletova, Camille Hablützel, Rachel McLeod, Daniela Yordanova, Jolinda de Korne, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: GE

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Genève (GE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-1620230515/2023

characteristic: title


text: SIB

text: public

text: SIB

text: Switzerland

text: GR

text: metagenome

text: Chur (GR)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

text: hCoV-19/Switzerland/GR-ETHZ-1720230519/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: SG

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: size of the catchment area

text: hCoV-19/Switzerland/SG-ETHZ-1920230518/2023


text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/BE-ETHZ-2520230519/2023


text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-1020230517/2023


text: SIB

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

text: metagenome

text: Genève (GE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-1620230517/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: GR

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Chur (GR)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GR-ETHZ-1720230520/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: SG

text: metagenome

text: Altenrhein (SG)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-1920230519/2023

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

text: hCoV-19/Switzerland/BE-ETHZ-2520230520/2023


text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: size of the catchment area

text: hCoV-19/Switzerland/TI-ETHZ-520230524/2023


text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-1020230525/2023