status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Darja

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: MT+

text: Cylindrotheca closterium

characteristic: organism

text: Cylindrotheca closterium

characteristic: title


S2_o    S2

text: Darja

text: public

text: S2_o S2

text: MT+

text: Cylindrotheca closterium

text: Cylindrotheca closterium


S3_o    S3

text: Darja

text: public

text: S3_o S3

text: MT-

text: Cylindrotheca closterium

text: Cylindrotheca closterium


S4_o    S4

text: Darja

text: public

text: S4_o S4

text: MT-

text: Cylindrotheca closterium

text: Cylindrotheca closterium


S5_o    S5

text: Darja

text: public

text: S5_o S5

text: MT-

text: Cylindrotheca closterium

text: Cylindrotheca closterium


S6_o    S6

text: Darja

text: public

text: S6_o S6

text: MT-

text: Cylindrotheca closterium

text: Cylindrotheca closterium


S7_o    S7

text: Darja

text: public

text: S7_o S7

text: MT+

text: Cylindrotheca closterium

text: Cylindrotheca closterium


S8_o    S8

text: Darja

text: public

text: S8_o S8

text: MT+

text: Cylindrotheca closterium

text: Cylindrotheca closterium


text: Darja

text: public

text: MT+

text: Cylindrotheca closterium

text: Cylindrotheca closterium

text: S10 11_big_div.clade


text: Darja

text: public

text: MT-

text: Cylindrotheca closterium

text: Cylindrotheca closterium


E-MTAB-13372:Sample 1

text: public

text: E-MTAB-13372:Sample 1

tag: Namespace:IUF – Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany

text: ArrayExpress

characteristic: broker name

text: A549; THP-1

text: alveolar epithelial cell type II; monocyte differentiated to macrophage-like phenotype

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: After 24 hours of exposure, the transwell membranes with the air-liquid interface co-cultures were rinsed with ice-cold PBS twice, both on the apical and basolateral sides. Subsequently, the membranes were cut out of their frame with a scalpel, immersed into 500 µL ice-cold TRIzol reagent (ThermoFisher, #15596026), vortexed, and frozen at -80°C. A549 (ATCC, #CCL-185) cells were cultured in RPMI-1640 (containing L-glutamine) (ThermoFisher, #21875) substituted with 10 % FCS (Merck, #F7524) and 1 % P/S (Sigma, #P0781), hereinafter A549 medium. After thawing, A549 cells were used at passages 2–20. THP 1 (ATCC, #TIB-202) cells were cultured in RPMI-1640 (containing L-glutamine and 25 mM HEPES) (ThermoFisher, #52400) substituted with 10 % FCS, 1 % P/S, 1 mM sodium pyruvate (ThermoFisher, #11360070), 0.7 % D-glucose (Sigma, #G8769) and 50 nM 2-mercaptoethanol (ME) (ThermoFisher, #31350010), hereinafter THP 1 medium. After thawing, THP-1 cells were used at passages 5–15. For air-liquid interface (ALI) co-cultures, on the first day, 1.12*105 A549 cells in 0.5 mL A549 medium were seeded on the apical side of transwell filters (Corning, #3460). At the basolateral side, 1.0 mL A549 medium was used. On the second day, the apical and basolateral medium was removed and fresh A549 medium added. In parallel, 3*106 THP-1 cells were differentiated with 100 nM phorbol 12-myristate-13-acetate (PMA) (Sigma, #P1585) in 25 cm² flasks (Greiner, #690175) for 24 h. On the third day, the basolateral medium removed and fresh A549 medium was added and the apical A549 was removed. The differentiated THP-1 cells were detached with accutase (Sigma, #A6964). 4.4*104 differentiated THP-1 cells in 0.5 mL THP-1 medium without ME were seeded on the apical side of the confluent A549 cell layer. After for 2 h, the apical medium was removed. The co-culture was maintained in contact with air for 22–26 h until exposure on the fourth. For exposure a Vitrocell Cloud 12α system was used. The ALI co-cultures were placed onto 3 mL A549 medium containing 25 mM HEPES (Sigma, #H0887). In the exposure chamber, 3x 500 µL 4 mg/mL Saharan dust or DQ12 suspended in 1.25 % PBS in endotoxin-free H2O was nebulized. In parallel, in the control chamber, 236 µL 1.25 % PBS in endotoxin-free H2O was nebulized. Before each nebulization, the humidity in the chambers was left to saturate for 30 min. After each nebulization, sedimentation was observed via Vitrocell quartz crystal microbalance, and at the end of sedimentation the chambers were lifted. After exposure, the ALI co-cultures were placed on 1.2 mL A549 medium and incubated for 24 h until sample collection. The transwell membranes with the cells of the co-culture immersed in TRIzol reagent were left to melt at room temperature. The samples were vigorously shaken at room temperature for 10 min using a Thermomixer 5436 (Eppendorf). Subsequently, 100 µL of ice-cold chloroform (Roth, #7331.2) was added, vortexed for 15 s, left at room temperature for 10 min, and centrifuged at 4°C, 12,000 g for 15 min. The upper aqueous phases were transferred to a new vial and 250 µL 2-propanol (Sigma-Aldrich, #I9516) were added. The mixtures were vortexed for 15 s, left at room temperature for 10 min, and centrifuged at 4°C, 12,000 g for 15 min. The supernatants were discarded and 900 µL 75% ethanol (Roth, #9065.4) in nuclease-free H2O (Qiagen, #1039498) was added. The samples were briefly vortexed and centrifuged at 4°C, 12,000 g for 5 min. The supernatants were discarded and the samples were left to dry for about 10 min. The dry RNA pellets were dissolved in 30 µL nuclease-free H2O. The RNA samples were treated with DNase I (Merck, # AMPD1) to digest genomic DNA. An RNA quality check was performed using a High Sensitivity RNA ScreenTape Analysis kit (Agilent, #5067-5579). Only RNA with an RNA integrity number equivalent of ≥ 7 was subjected to library preparation. 50 ng total RNA of each sample was used as input for library preparation using the PCR-cDNA Barcoding kit (Oxford Nanopore Technologies, #SQK-PCB109) according to the manufacturer’s instructions (protocol version: PCB_9092_v109_revD_10Oct2019).

text: adult; infant

characteristic: developmental stage

text: lung adenocarcinoma; childhood acute monocytic leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: air-liquid interface co-culture of A549 and THP-1

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

characteristic: organism part

text: Homo sapiens

text: male; male

characteristic: sex

text: Sample 1


E-MTAB-13372:Sample 10

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: IUF – Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-13372:Sample 10

text: ArrayExpress

text: A549; THP-1

text: not collected

text: human

text: adult; infant

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 10


E-MTAB-13372:Sample 11

text: public

characteristic: SRA accession

text: E-MTAB-13372:Sample 11

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: A549; THP-1

text: not collected

text: human

characteristic: description

text: adult; infant

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 11

characteristic: title


E-MTAB-13372:Sample 12

text: public

text: E-MTAB-13372:Sample 12

text: ArrayExpress

text: A549; THP-1

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: adult; infant

characteristic: developmental stage

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 12


E-MTAB-13372:Sample 2

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13372:Sample 2

text: ArrayExpress

text: A549; THP-1

text: not collected

text: human

text: adult; infant

text: wild type genotype

text: not collected

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

characteristic: organism part

text: Homo sapiens

text: male; male

characteristic: sex

text: Sample 2


E-MTAB-13372:Sample 3

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13372:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: A549; THP-1

text: not collected

text: human

text: adult; infant

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 3


E-MTAB-13372:Sample 4

text: public

text: E-MTAB-13372:Sample 4

text: ArrayExpress

characteristic: broker name

text: A549; THP-1

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult; infant

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 4

characteristic: title


E-MTAB-13372:Sample 5

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13372:Sample 5

text: ArrayExpress

text: A549; THP-1

text: not collected

text: human

text: adult; infant

characteristic: developmental stage

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 5


E-MTAB-13372:Sample 6

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-13372:Sample 6

text: ArrayExpress

text: A549; THP-1

text: not collected

text: human

text: adult; infant

text: wild type genotype

text: not collected

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

characteristic: organism part

text: Homo sapiens

text: male; male

characteristic: sex

text: Sample 6


E-MTAB-13372:Sample 7

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13372:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: A549; THP-1

text: not collected

characteristic: collection date

text: human

text: adult; infant

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 7


E-MTAB-13372:Sample 8

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13372:Sample 8

text: ArrayExpress

text: A549; THP-1

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult; infant

text: wild type genotype

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 8

characteristic: title


E-MTAB-13372:Sample 9

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-13372:Sample 9

text: ArrayExpress

text: A549; THP-1

text: not collected

text: human

text: adult; infant

characteristic: developmental stage

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: alveolus; blood

text: Homo sapiens

text: male; male

text: Sample 9


text: STANFORD UNIVERSITY

text: public

characteristic: INSDC status

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

text: Protocols: >1000-fold coverage of mutagenized cells (Brunello library) was infected with PeV-A1 or PeV-A2 at MOI 0.1. Resistant cell colonies were harvested. Uninfected starting populations of mutagenized cells were used as the unselected reference. Total genomic DNA from both virus-resistant and uninfected cells was respectively extracted using QIAamp DNA Mini Kit (Qiagen). A first round of PCR was used to amplify the guide RNA sequences encoded in the gDNA, followed by a second round of PCR to add the barcodes/adapters for amplicon sequencing. 2% agarose gels and a QIAquick gel extraction kit were used to purify the amplicons.

text: Intestinal Type Adenocarcinoma

text: lentiCas9-Blast; lentiGuide-Puro; SLC35A1/EXTL3 knockout, PeV-A1 infection

text: not collected

characteristic: infect

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


text: STANFORD UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: not collected

characteristic: collection date

text: human

text: Intestinal Type Adenocarcinoma

text: lentiCas9-Blast; lentiGuide-Puro; SLC35A1/EXTL3 knockout; PeV-A2 infection

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: STANFORD UNIVERSITY

text: public

text: ArrayExpress

text: epithelial cell

text: not collected

text: human

characteristic: common name

characteristic: description

text: Intestinal Type Adenocarcinoma

text: lentiCas9-Blast; lentiGuide-Puro; SLC35A1/EXTL3 knockout

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: Unselected


text: Swiss TPH

characteristic: INSDC center name

text: public

text: not provided

text: Outgroup strain L.4.4.1.2

text: Nepal

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

characteristic: strain

characteristic: title


text: Swiss TPH

text: public

text: Bernese outbreak strain L.4.4.1.1

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Swiss TPH

text: public

characteristic: INSDC status

text: not provided

text: Bernese outbreak strain L.4.4.1.1

text: Switzerland

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: WAGENINGEN UNIVERSITY

text: public

text: dog

text: China

text: Canis lupus familiaris

text: Canis lupus familiaris


Mock population

text: The Roslin Institute (University of Edinburgh)

text: public

text: Mock population

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: missing: control sample

text: metagenome

text: Mock community used as positive control for 16S rRNA sequencing

text: positive control

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mock community

characteristic: host body site

text: control

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome

text: FM


characteristic: ENA first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_10, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 7

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_123, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry )

characteristic: description

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_124, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_1, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_14, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

characteristic: environmental medium

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_3, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faeces

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_19, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 30

text: United Kingdom

text: faeces with glycerol

characteristic: host body site

text: recipient

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_16, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 0

text: United Kingdom

text: faeces

text: recipient

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_6, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces with glycerol

text: donor

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_12, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces

text: donor

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_21, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

characteristic: description

text: Donor of faecal tranplant

text: United Kingdom

text: faeces with glycerol

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_5, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

text: faeces

text: recipient

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_7, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_4, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: environmental medium

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_23, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faecal microbiome transplant slurry

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_24, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces with glycerol

characteristic: host body site

text: donor

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_22, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_97, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 90

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_98, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 7

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_55, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: description

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_66, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

text: faeces

text: recipient

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_20, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 0

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_67, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: environmental medium

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_54, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_62, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces with glycerol

characteristic: host body site

text: donor

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: The Roslin Institute (University of Edinburgh)

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_53, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_63, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces

text: donor

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_50, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces with glycerol

text: donor

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_39, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

characteristic: description

text: Donor of faecal tranplant

text: United Kingdom

text: faeces

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_43, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_15, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_52, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

characteristic: environmental medium

text: United Kingdom

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_65, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faecal microbiome transplant slurry

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_41, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

characteristic: host body site

text: donor

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_40, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_38, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces with glycerol

text: donor

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_29, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_28, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

characteristic: description

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_42, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 0

text: United Kingdom

text: faeces

text: recipient

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_26, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces with glycerol

text: donor

text: metagenome

text: metagenome


text: The Roslin Institute (University of Edinburgh)

text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_27, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

text: Donor of faecal tranplant

characteristic: environmental medium

text: United Kingdom

text: faeces

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_17, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_96, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 90

text: United Kingdom

text: faeces with glycerol

characteristic: host body site

text: recipient

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_99, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 7

text: United Kingdom

text: faeces

text: recipient

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_100, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 30

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_101, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_79, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: description

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_80, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

text: faeces

text: recipient

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_35, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_33, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: environmental medium

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_84, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_75, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces

characteristic: host body site

text: donor

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_11, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

characteristic: project name

text: metagenome


text: The Roslin Institute (University of Edinburgh)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_78, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 0

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_82, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_68, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

characteristic: description

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_77, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_85, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 90

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_72, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

characteristic: environmental medium

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_71, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 30

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_81, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 7

text: United Kingdom

text: faeces with glycerol

characteristic: host body site

text: recipient

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_83, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_74, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faeces with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: faeces with glycerol

text: donor

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_9, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_76, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

characteristic: description

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

text: metagenome


text: The Roslin Institute (University of Edinburgh)

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_69, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_73, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_70, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

characteristic: environmental medium

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_34, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_104, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

characteristic: host body site

text: recipient

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_105, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: recipient

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_107, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 0

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_32, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_94, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: description

text: Days since received last faceal transplant: Day 30

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_8, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_95, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_108, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

characteristic: environmental medium

text: United Kingdom

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_106, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_102, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

characteristic: host body site

text: recipient

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: The Roslin Institute (University of Edinburgh)

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_122, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_113, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_118, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_114, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: description

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_109, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_120, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: Days since received last faceal transplant: Day 7

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_18, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

characteristic: environmental medium

text: United Kingdom

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_126, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: donor

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_119, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: United Kingdom

text: faeces

characteristic: host body site

text: recipient

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_111, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

text: faecal microbiome transplant slurry

text: donor

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Canis lupus familiaris

text: metagenome

text: Sample_110, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Canis lupus familiaris

characteristic: collection date

text: metagenome

text: Sample_121, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 30

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_115, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

characteristic: description

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_112, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry with glycerol)

text: Donor of faecal tranplant

text: United Kingdom

text: donor

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

characteristic: INSDC status

text: Canis lupus familiaris

text: metagenome

text: Sample_116, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces with glycerol)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: faeces with glycerol

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

characteristic: broad-scale environmental context

text: metagenome

text: Sample_117, taken from a Canis lupus familiaris faecal microbial transplant recipient (16S rRNA gene sequencing: faeces)

text: Days since received last faceal transplant: Day 0

characteristic: environmental medium

text: United Kingdom

text: faeces

text: recipient

text: metagenome

text: metagenome


text: public

text: Canis lupus familiaris

text: metagenome

text: Sample_125, taken from a Canis lupus familiaris faecal microbial transplant donor (16S rRNA gene sequencing: faecal microbiome transplant slurry)

text: Donor of faecal tranplant

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: faecal microbiome transplant slurry

text: donor

text: metagenome

text: metagenome


text: public

text: Reagent only negative control

text: missing: control sample

text: metagenome

text: DNA extraction and PCR negative control (1) (16S rRNA gene sequencing)

text: Reagent only negative control

text: United Kingdom

text: Reagent only negative control

characteristic: host body site

text: control

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

text: public

text: Reagent only negative control

text: missing: control sample

text: metagenome

text: DNA extraction and PCR negative control (2) (16S rRNA gene sequencing)

text: Reagent only negative control

text: United Kingdom

text: Reagent only negative control

text: control

text: metagenome

characteristic: project name

text: metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Positive control

text: missing: control sample

text: metagenome

text: DNA extraction and PCR positive control (1) (16S rRNA gene sequencing)

text: Positive control

text: United Kingdom

text: Positive control

text: control

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: public

text: Positive control

text: missing: control sample

characteristic: collection date

text: metagenome

text: DNA extraction and PCR positive control (2) (16S rRNA gene sequencing)

text: Positive control

text: United Kingdom

text: Positive control

text: control

text: metagenome

text: metagenome


characteristic: INSDC center name

text: public

text: Unassigned reads from 16S sequencing run

text: missing: synthetic construct

text: metagenome

text: unassigned reads from 16S rRNA sequencing run

characteristic: description

text: United Kingdom

text: Unassignedonor readonors from 16S sequencing run

text: metagenome

text: metagenome


text: QUADRAM INSTITUTE

text: public

characteristic: broker name

text: United Kingdom

text: Not applicable

characteristic: isolate

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

characteristic: title


text: QUADRAM INSTITUTE

text: public

characteristic: INSDC status

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Not applicable

text: Campylobacter coli

text: Campylobacter coli


text: QUADRAM INSTITUTE

text: public

text: United Kingdom

text: Not applicable

text: Campylobacter lari

text: Campylobacter lari


text: QUADRAM INSTITUTE

text: public

text: United Kingdom

text: Not applicable

text: Campylobacter hyointestinalis

text: Campylobacter hyointestinalis


text: QUADRAM INSTITUTE

text: public

text: United Kingdom

text: Not applicable

text: Aliarcobacter cryaerophilus

text: Aliarcobacter cryaerophilus


text: QUADRAM INSTITUTE

text: public

text: United Kingdom

text: Not applicable

text: Aliarcobacter butzleri

text: Aliarcobacter butzleri


text: QUADRAM INSTITUTE

text: public

text: United Kingdom

text: Not applicable

text: Brucella intermedia

text: Brucella intermedia


characteristic: External Id

text: UNIVERSITY OF OXFORD

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: Ecoli CFT073 isolate ONT multiplex sequenced with r10.4

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT multiplex sequenced with r10.4

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT multiplex sequenced with r10.4

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT multiplex sequenced with r10.4

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UANTW

text: public

text: human vagina

text: human vaginal metagenome

text: human vaginal metagenome


text: UANTW

text: public

text: human vagina

text: human vaginal metagenome

text: human vaginal metagenome

text: NC-seq


text: INRAE

text: public

text: milk

text: cow milk

characteristic: environment (biome)

text: cow milk

characteristic: environment (feature)

text: cow milk

characteristic: environment (material)

text: France

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: milk metagenome

text: MSQ-16SV3F (5′- TACGGRAGGCWGCAG-3) and PCR1R-460 (5′- TTACCAGGGTATCTAATCCT-3)

characteristic: pcr primers

text: Actrade

text: milk metagenome

text: Illumina

characteristic: sequencing method

characteristic: target gene

text: milk sample j2 A


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: INRAE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pool

characteristic: description

text: cow teat skin

text: cow teat skin

text: cow teat skin

text: France

text: skin metagenome

text: Actrade

characteristic: project name

text: skin metagenome

text: Illumina

text: pool sample j2 A


characteristic: External Id

text: INRAE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: pool

text: cow teat skin

characteristic: environment (biome)

text: cow teat skin

characteristic: environment (feature)

text: cow teat skin

text: France

characteristic: geographic location (country and/or sea)

text: eukaryote

text: skin metagenome

characteristic: organism

text: ITS3f (5′-GCATCGATGAAGAACGCAGC-3′) and ITS4_KYO1 (5′-TCCTCCGCTTWTTGWTWTGC-3′)

text: Actrade

text: skin metagenome

text: Illumina

text: ITS

characteristic: title


text: INRAE

text: public

text: cow teat skin

text: cow teat skin

text: cow teat skin

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

characteristic: miscellaneous environmental package

text: skin metagenome

characteristic: pcr primers

text: Actrade

text: skin metagenome

text: Illumina

characteristic: sequencing method

text: ITS

characteristic: target gene


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: INRAE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: litter

characteristic: description

text: animal litter

text: animal litter

text: animal litter

text: France

text: eukaryote

text: surface metagenome

text: Actrade

characteristic: project name

text: surface metagenome

text: Illumina

text: ITS


characteristic: External Id

text: CNAP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Assembled Transcriptome of P. putredinis grown on six lignocellulosic substrates

text: Parascedosporium putredinis

characteristic: organism

text: Parascedosporium putredinis

text: P. putredinis NO1 Transcriptome Assembly

characteristic: title