status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: University of Tsukuba

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:258-81367

tag: Namespace:University of Tsukuba

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Whole exome sequencing in GCB cells sorted from tumor-bearing MxTR

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:258-81368

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:258-81369

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:258-81370

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81371

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81372

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81373

text: house mouse

text: Whole exome sequencing in TFH cells sorted from tumor-bearing MxTR

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81374

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81375

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81376

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81377

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81378

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81379

text: house mouse

text: Whole genome bisulfite sequencing in GCB cells sorted from tumor-bearing MxTR

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81380

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81381

text: house mouse

text: Whole genome bisulfite sequencing in GCB cells sorted from MxWT

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81382

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81383

text: human

text: RNA sequencing in Jurkat cells expressing the G17V RHOA mutant under stimulation by an anti-CD3 antibody

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81384

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81385

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81386

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:259-81387

text: human

text: RNA sequencing in Jurkat cells expressing the G17V RHOA mutant with stimulation by CD40-Fc chimera protein under stimulation by an anti-CD3 antibody

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81388

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81389

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81390

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81391

text: human

text: RNA sequencing in Jurkat cells expressing mock under stimulation by an anti-CD3 antibody

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81392

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81393

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81394

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81395

text: human

text: RNA sequencing in Jurkat cells expressing mock with stimulation by CD40-Fc chimera protein under stimulation by an anti-CD3 antibody

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81396

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81397

text: human

text: Homo sapiens

text: Homo sapiens


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81398

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81399

text: house mouse

text: RNA sequencing in GCB cells sorted from tumor-bearing MxTR

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81400

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81401

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81402

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81403

text: house mouse

text: RNA sequencing in GCB cells sorted from MxWT

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81404

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:260-81405

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-05-07-2022-16:18:22:261-81406

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

text: not provided

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Escherichia coli

text: Escherichia coli

characteristic: strain


text: public

text: not provided

text: Germany

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

tag: Namespace:Institut de recherche experimentale et clinique - IREC

text: Clinical isolate CTMA_1691

text: Democratic Republic of the Congo

text: Vibrio cholerae

text: Vibrio cholerae

text: Clinical isolate CTMA_1691


text: Institut de recherche experimentale et clinique - IREC

text: public

text: Clinical isolate CTMA_1693

text: Democratic Republic of the Congo

text: Vibrio cholerae

text: Vibrio cholerae

text: Clinical isolate CTMA_1693


text: public

text: Clinical isolate CTMA_1694

text: Democratic Republic of the Congo

text: Vibrio cholerae

text: Vibrio cholerae

text: Clinical isolate CTMA_1694


text: public

text: Clinical isolate CTMA_1695

text: Democratic Republic of the Congo

text: Vibrio cholerae

text: Vibrio cholerae

text: Clinical isolate CTMA_1695


text: Nathan Nakatsuka

text: public

tag: Namespace:Nathan Nakatsuka

text: human

text: Mexico

text: Homo sapiens

text: Homo sapiens


text: Nathan Nakatsuka

text: public

text: human

text: Mexico_CuevaDeLosMuertosChiquitos_1100BP

text: Mexico

text: Homo sapiens

text: Homo sapiens


text: Luxembourg Institute of Health

text: public

tag: Namespace:Luxembourg Institute of Health

text: house mouse

text: Fecal sample at day 21 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 62 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (Cr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 64 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (Cr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 13 from mouse (ID 293) colonised with 10SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 13 from mouse (ID SW20M043) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 16 from mouse (ID SW20M043) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 13 from mouse (ID SW20M047) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 16 from mouse (ID SW20M047) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 64 from mouse (ID SW20M047) colonised with 13SM and switched to a FF diet (Cr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 13 from mouse (ID SW20M048) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 16 from mouse (ID SW20M048) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 64 from mouse (ID SW20M048) colonised with 13SM and switched to a FF diet (Cr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 13 from mouse (ID SW20M049) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 16 from mouse (ID SW20M049) colonised with 13SM and switched to a FF diet (noCr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 64 from mouse (ID SW20M049) colonised with 13SM and switched to a FF diet (Cr)

text: Luxembourg

text: Mus musculus

text: Mus musculus


text: public

text: 135201:8819885e-b998-4593-93ec-c73c4f7de533

tag: Namespace:Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

text: freshwater lake biome [ENVO:01000252}

characteristic: broad-scale environmental context

text: GFBIO

characteristic: broker name

unit: m

characteristic: depth

text: Lake sediment samples

characteristic: elevation

text: lake sediment [ENVO:00000546]

characteristic: environmental medium

text: sediment

characteristic: environmental package

text: Russia

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lake Ulu, Oymakon

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: hydrographic feature [ENVO:00000012]

characteristic: local environmental context

text: freshwater sediment metagenome

characteristic: project name

text: Lake sediment samples

text: freshwater sediment metagenome

text: sediment

characteristic: sediment environmental package

text: NextSeq 500

characteristic: sequencing method

text: true

characteristic: submitted to insdc

characteristic: total depth of water column


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 135200:8819885e-b998-4593-93ec-c73c4f7de533

characteristic: Submitter Id

text: freshwater lake biome [ENVO:01000252}

text: GFBIO

characteristic: collection date

text: Lake sediment samples

characteristic: description

text: lake sediment [ENVO:00000546]

text: sediment

text: Russia

characteristic: geographic location (country and/or sea)

text: Lake Ulu, Oymakon

text: mimarks-survey

text: hydrographic feature [ENVO:00000012]

text: freshwater sediment metagenome

characteristic: organism

text: Lake sediment samples

text: freshwater sediment metagenome

text: sediment

text: NextSeq 500

text: true

characteristic: title


text: WAGENINGEN UNIVERSIT

text: public

tag: Namespace:WAGENINGEN UNIVERSIT

text: potato

characteristic: common name

text: Solanum tuberosum clone IVP92-057-3

characteristic: estimated size

characteristic: genotype

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Solanum tuberosum

text: potato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: ploidy

text: Solanum tuberosum

text: Potato IVP16-560 parent


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: potato

text: Solanum tuberosum clone IVP92-030-14

characteristic: description

text: Netherlands

text: glasshouse

text: Solanum tuberosum

text: potato

text: soil

text: Solanum tuberosum

text: Potato IVP16-560 parent


text: WAGENINGEN UNIVERSIT

text: public

text: potato

characteristic: common name

text: Solanum tuberosum IVP92-057-3 x IVP92-030-14 descendant

characteristic: estimated size

characteristic: genotype

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

characteristic: isolation and growth condition

text: Solanum tuberosum

characteristic: organism

text: potato

text: soil

text: Solanum tuberosum

text: Potato IVP16-560 descendant

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

text: public

text: potato

text: Solanum tuberosum C x E descendant

text: Netherlands

text: glasshouse

characteristic: number of replicons

text: Solanum tuberosum

text: potato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: ploidy

text: Solanum tuberosum

text: Potato CE-XW descendant


text: WAGENINGEN UNIVERSIT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: potato

characteristic: common name

text: Solanum tuberosum clone C (USW5337.3)

characteristic: description

characteristic: estimated size

text: C

characteristic: genotype

text: Netherlands

characteristic: geographic location (country and/or sea)

text: glasshouse

text: Solanum tuberosum

text: potato

text: soil

text: Solanum tuberosum

text: Potato CE-XW parent


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

text: public

text: potato

text: Solanum tuberosum clone E (77.2102.37)

text: E

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

characteristic: isolation and growth condition

text: Solanum tuberosum

characteristic: organism

text: potato

text: soil

text: Solanum tuberosum

text: Potato CE-XW parent

characteristic: title


text: UAM

characteristic: SRA accession

characteristic: Submitter Id

text: Argentina

text: Bacillus subtilis

text: Bacillus subtilis


text: Department of Pharmacy, The 960 Hospital of PLA, Jinan, China

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min.  Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\"adenylate, then the adaptors were ligated to the end of these 3\"adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

text: not collected

text: not applicable

characteristic: isolate

text: Candida albicans

text: Candida albicans

text: whole organism

characteristic: organism part

text: Aneuploid

characteristic: ploidy

text: Candida albicans


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: MRC Centre for Neurodevelopmental Disorders, Institute of psychiatry, psychology, & Neuroscience, King's College London.

text: public

text: ArrayExpress

text: not collected

text: zebrafish

characteristic: common name

text: Protocols: Heterozygous mutant (5bp deletion 32 bp from canonical start codon; AAATG) foxg1a adult zebrafish in a dlx5-6;GFP background were incrossed and progeny collected. Dlx+ interneuron phenotype was used to identify homozygous (no interneurons in telencephalon) and heterozygous (reduced number of interneurons in telencephalon). Genotyping was confirmed with RNA-sequencing reads at the foxg1a gene locus to ensure correct genotyping. RNA was extracted from single 24hpf zebrafish using the Qiagen RNeasy Micro Kit (Qiagen, 74004). RNA concentration was measured using the Qubit reagent kit and a small sample was tested for RNA integrity using a bioanalyzer instrument. Only samples with an RNA integrity number of 9 or above were used in this experiment. Total RNA Library was repapred using the Illumina TruSeq Stranded Total RNA Library kit. Ribosomal RNAs were depleted using Ribo-Zero Gold.

characteristic: description

text: pharyngula prim-5

characteristic: developmental stage

text: Foxg1a het

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Danio rerio

text: Danio rerio

text: whole organism

text: Danio rerio


characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

text: zebrafish

text: pharyngula prim-5

text: Foxg1a hom

text: not collected

text: not applicable

text: Danio rerio

characteristic: organism

text: Danio rerio

text: whole organism

text: Danio rerio


text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: zebrafish

text: pharyngula prim-5

text: Foxg1a WT

text: not collected

text: not applicable

text: Danio rerio

text: Danio rerio

text: whole organism

text: Danio rerio

characteristic: title


text: IBENS

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: thale cress

characteristic: ecotype

text: France

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: HUN-REN BRC

text: public

characteristic: collection date

text: Staphylococcus aureus  ATCC29213 line adapted to L-CHG10-teixobactin

text: Hungary

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: AWI

text: public

characteristic: broad-scale environmental context

characteristic: depth

text: lake sediment core samples

characteristic: elevation

characteristic: environmental medium

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: freshwater sediment metagenome

text: sedaDNA Lake Naleng

characteristic: project name

text: freshwater sediment metagenome


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: AWI

characteristic: INSDC center name

text: public

text: DNA extraction control

characteristic: description

text: China

characteristic: geographic location (country and/or sea)

text: freshwater sediment metagenome

text: sedaDNA Lake Naleng

text: freshwater sediment metagenome


text: AWI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: library preparation control

text: China

text: freshwater sediment metagenome

characteristic: organism

text: sedaDNA Lake Naleng

text: freshwater sediment metagenome

characteristic: title


text: University of Tsukuba

text: public

text: ena-SAMPLE-TAB-23-03-2024-22:06:09:167-118772

characteristic: collection date

text: house mouse

characteristic: common name

text: RNA sequencing in GCB cells sorted from tumor-bearing MxTR

text: Japan

text: Mus musculus

text: Mus musculus


text: IBENS

text: public

text: maize

characteristic: ecotype

text: France

text: Zea mays subsp. mays

text: Zea mays subsp. mays


text: INSTITUTE OF APPLIED BIOSCIENCES - CERTH

text: public

text: Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece

characteristic: collecting institution

text: not provided

text: not provided

characteristic: collector name

text: Greece

text: Thessaloniki

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Thessaloniki

text: human

text: not provided

text: Homo sapiens

text: not provided

text: RNA


text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Greece

text: Alexandroupoli

text: human

text: not provided

text: Homo sapiens

text: not provided

text: RNA

characteristic: organism

characteristic: title


text: public

text: not provided

characteristic: collector name

text: Greece

text: Therspotia

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: RNA


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: not provided

text: Greece

text: Thesprotia

text: human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host subject id

text: RNA

characteristic: isolate

characteristic: sample capture status


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Chalkidiki

text: human

text: not provided

text: Homo sapiens

text: not provided

text: RNA


text: public

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Greece

text: Lagadas

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: not provided

text: RNA

characteristic: organism

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Queensland | Great Barrier Reef | Davies Reef

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: sponge metagenome

text: NOT PROVIDED

text: b4078f04-6ca4-4969-986c-312333a106f5-asg-metagenome

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Pseudohongiella sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: uncultured Pseudohongiella sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 1f6577fb-77a0-4984-b60f-3c56dbd1a643-asg-MAGScoT_cleanbin_000001

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 3ae10c97-12d3-4f15-803a-c06529d25894-asg-MAGScoT_cleanbin_000002

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pseudomonadales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 21cef870-fa1b-4b3c-899b-e1067a33216a-asg-MAGScoT_cleanbin_000003

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Pseudohongiella sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudohongiella sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: b7dce049-0976-4d44-8fd2-f32d03c7f492-asg-MAGScoT_cleanbin_000004

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Parashewanella sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Parashewanella sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: 881e4487-a0c6-4dd3-941d-148c500e8729-asg-MAGScoT_cleanbin_000005

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 7d6f178f-f3ab-4a0a-92f0-e21e52ae7d67-asg-MAGScoT_cleanbin_000006

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pseudomonadales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification fully defined by topology

characteristic: taxonomic identity marker

text: 469ae773-3ade-45fd-bcab-e9e99387e7b8-asg-MAGScoT_cleanbin_000007

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Rhodothermales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Rhodothermales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: ANI

text: b05feed2-8960-4069-9db7-c9311d73c194-asg-MAGScoT_cleanbin_000008

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Rhodothermales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Rhodothermales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: f7302667-2df0-4779-859c-f0319a09bd08-asg-MAGScoT_cleanbin_000009

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Queensland | Great Barrier Reef | Davies Reef

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Alphaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 5d05a38c-d833-43fa-a28a-6dc6352126db-asg-MAGScoT_cleanbin_000010

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Paracoccaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Paracoccaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: bc2070dc-b5d9-42a8-9d67-a4da11dceb2f-asg-MAGScoT_cleanbin_000011

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Flavobacteriaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Flavobacteriaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: ab709e8a-14ed-4b26-b252-d1d33d429471-asg-MAGScoT_cleanbin_000012

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Acidimicrobiales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Acidimicrobiales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: f486971d-0145-4f21-b1b9-71211acd7392-asg-MAGScoT_cleanbin_000013

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: df31eaec-0dc2-4b4a-a242-29057862e582-asg-MAGScoT_cleanbin_000014

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Alphaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 9bbe8dc0-4739-4a5c-bc40-61a97bbb50f1-asg-MAGScoT_cleanbin_000015

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Synechococcus sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Synechococcus sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: f95ecb28-eecd-4dc9-a29e-4b8888562194-asg-MAGScoT_cleanbin_000016

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Arenicellales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Arenicellales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: ec974412-db14-4702-b477-234edc94d11d-asg-MAGScoT_cleanbin_000017

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Rhodobacter sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Rhodobacter sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: d416fc4f-4fe0-4670-9b24-9be4f364353a-asg-MAGScoT_cleanbin_000018

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Arenicellales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Arenicellales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: 1d99787c-7928-4490-acc2-233fdd75a9d7-asg-MAGScoT_cleanbin_000019

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Synechococcus sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Synechococcus sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 0482f29d-29c2-4e82-931e-116b28c2bdff-asg-MAGScoT_cleanbin_000020

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

text: Queensland | Great Barrier Reef | Davies Reef

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured candidatus Porisulfidus sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: uncultured candidatus Porisulfidus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 9763eae8-8697-40a4-ab8e-c6eafd03cdb7-asg-MAGScoT_cleanbin_000021

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Aestuariivita sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Aestuariivita sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 830a4d74-617a-40d7-9e73-f08ad7538350-asg-MAGScoT_cleanbin_000022

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Acidimicrobiales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Acidimicrobiales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: f3893f38-8f6c-42ac-9059-aea30e9af877-asg-MAGScoT_cleanbin_000023

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 145209d7-7914-405a-8318-355f2a3d3960-asg-MAGScoT_cleanbin_000024

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Flavobacteriaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Flavobacteriaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 0e7efe48-06a4-4e95-a370-e49143ed6bab-asg-MAGScoT_cleanbin_000025

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Thermodesulfobacteriota bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Thermodesulfobacteriota bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 0251ea69-d227-4e76-b062-55aef8c9e25e-asg-MAGScoT_cleanbin_000026

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 73c5ab18-6c3b-4587-8f11-5e1f73f53afc-asg-MAGScoT_cleanbin_000027

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 6a300481-f273-45a5-883b-b192f0f59bb5-asg-MAGScoT_cleanbin_000028

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Alphaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: e79d4470-296e-47d0-ad7b-56dbf10d3fbb-asg-MAGScoT_cleanbin_000029

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: sponge metagenome

text: NOT PROVIDED

text: 1040f4c8-7115-4c10-b34e-056c60360c72-asg-metagenome

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pseudomonadales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Pseudomonadales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 107bc46b-cdc0-435c-914a-470cb6f77f40-asg-MAGScoT_cleanbin_000014

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Queensland | Great Barrier Reef | Davies Reef

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Alphaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 08ce14fb-b0a2-46e5-b458-bc6dce67f551-asg-MAGScoT_cleanbin_000015

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Synechococcus sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: uncultured Synechococcus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 89550827-aa84-43eb-a813-3902717c93b4-asg-MAGScoT_cleanbin_000016

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: uncultured Synechococcus sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Synechococcus sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 4750a65c-4e32-4c3d-80de-ef5587663022-asg-MAGScoT_cleanbin_000020

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: f6dec066-834c-4211-92e3-010eeaf4c220-asg-MAGScoT_cleanbin_000024

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: NICOLE WEBSTER

text: AIMS

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reef

characteristic: habitat

text: adult

characteristic: host life stage

text: Carteriospongia foliascens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

text: Sponge: Carteriospongia foliascens

text: marine reef biome

characteristic: local environmental context

text: sponge metagenome

text: Gammaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: 3b81fb82-dce9-4f36-9eff-42c9324110a7-asg-MAGScoT_cleanbin_000027

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph; hic-mapping

characteristic: binning parameters

text: aquatic biome

text: NICOLE WEBSTER

text: AIMS

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Reef

text: adult

text: Carteriospongia foliascens

text: not collected

text: NICOLE WEBSTER

text: AIMS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Carteriospongia foliascens

text: marine reef biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 8b65be5d-4b91-4e15-bce1-e4438a35aa81-asg-MAGScoT_cleanbin_000028

characteristic: title