status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: University of Cologne

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Cologne

characteristic: Submitter Id

characteristic: collection date

text: grain amaranth

characteristic: common name

text: Pooled green flower sample, regulator BSA

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Amaranthus hypochondriacus

characteristic: organism

text: Amaranthus hypochondriacus

text: flower

characteristic: title


text: University of Cologne

text: public

text: grain amaranth

text: Pooled red flower sample, regulator BSA

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: flower


text: University of Cologne

text: public

text: grain amaranth

text: Pooled green flower sample, biosynthesis BSA

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: flower


text: University of Cologne

text: public

text: grain amaranth

text: Pooled red flower sample, biosynthesis BSA

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: flower


text: University of Cologne

text: public

text: grain amaranth

text: Regulator BSA, green bulk

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: leaf


text: University of Cologne

text: public

text: grain amaranth

text: Regulator BSA, red bulk

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: leaf


text: University of Cologne

text: public

text: grain amaranth

text: Biosynthesis BSA, green bulk

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: leaf


text: University of Cologne

text: public

text: grain amaranth

text: Biosynthesis BSA, red bulk

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: leaf


text: University of Cologne

text: public

text: grain amaranth

text: PacBio Iso-Seq of PI 558499, mature seed

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: mature seed


text: University of Cologne

text: public

text: grain amaranth

text: PacBio Iso-Seq of PI 558499, root

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: root


text: University of Cologne

text: public

text: grain amaranth

text: PacBio Iso-Seq of PI 558499, cotyledones

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: cotyledones


text: University of Cologne

text: public

text: grain amaranth

text: PacBio Iso-Seq of PI 558499, flower

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: flower


text: University of Cologne

text: public

text: grain amaranth

text: PacBio Iso-Seq of PI 558499, leaf

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: leaf


text: University of Cologne

text: public

text: grain amaranth

text: PacBio Iso-Seq of PI 558499, pollen

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: pollen


text: University of Cologne

text: public

text: grain amaranth

text: PacBio Iso-Seq of PI 558499, developing seed

text: Germany

text: Amaranthus hypochondriacus

text: Amaranthus hypochondriacus

text: developing seed


Inoc-bac

text: public

text: Inoc-bac

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: Bacterial 16S rRNA amplicon sequences from the dispersed anaerobic sludge used to inoculate all four reactors

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: Inoculum.Bac


text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: Bacterial 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R1

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: public

text: Bacterial 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R2

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: public

text: Bacterial 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R3

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: public

text: Bacterial 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R4

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


Inoc-arch

text: public

text: Inoc-arch

text: Archaeal 16S rRNA amplicon sequences from the dispersed anaerobic sludge used to inoculate all four reactors

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: Inoculum.Arch


text: public

text: Archaeal 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R1

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: public

text: Archaeal 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R2

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: public

text: Archaeal 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R3

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: public

text: Archaeal 16S rRNA amplicon sequences from time series of anaerobic granulating sludges in R4

text: Netherlands

text: anaerobic digester metagenome

text: anaerobic digester metagenome


text: CEDIMOL

text: public

text: ena-SAMPLE-TAB-10-12-2023-23:17:33:017-73942

text: DNA

text: Colombia

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: isolate

text: Human

text: not provided

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: not provided

characteristic: serovar

characteristic: strain


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CEDIMOL

text: public

text: ena-SAMPLE-TAB-10-12-2023-23:17:33:017-73949

text: DNA

text: Colombia

text: not provided

text: Homo sapiens

text: not provided

text: Human

text: not provided

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: not provided


text: HOSPITAL SIRIO LIBANES

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:HOSPITAL SIRIO LIBANES

text: human

text: Spheroids, Control 24h, Replicate 1

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Spheroids, Control 24h, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

characteristic: common name

text: Spheroids, Control 24h, Replicate 3

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 24h, Replicate 1

text: France

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 24h, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 24h, Replicate 3

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control NT, Replicate 1

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control NT, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control NT, Replicate 3

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control FOLFIRI, Replicate 1

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control FOLFIRI, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control FOLFIRI, Replicate 3

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control FOLFOX, Replicate 1

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control FOLFOX, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, Control FOLFOX, Replicate 3

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 NT, Replicate 1

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 NT, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 NT, Replicate 3

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 FOLFIRI, Replicate 1

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 FOLFIRI, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 FOLFIRI, Replicate 3

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 FOLFOX, Replicate 1

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 FOLFOX, Replicate 2

text: France

text: Homo sapiens

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Spheroids, T3 FOLFOX, Replicate 3

text: France

text: Homo sapiens

text: Homo sapiens


text: CIBIO

text: public

text: Stool metagenome sample from the MAMI cohort

text: Spain

text: human gut metagenome

text: human gut metagenome


text: CIBIO

text: public

text: Humanmilk metagenome sample from the MAMI cohort

text: Spain

text: human milk metagenome

text: human milk metagenome


magcap-rna-control

text: Comenius University, Faculty of Mathematics, Physics and Informatics

text: public

text: magcap-rna-control

text: Control RNA sample from Magnusiomyces capitatus without DEPC treatment

text: Sweden

text: wood pulp

text: Magnusiomyces capitatus NRRL Y-17686

text: Magnusiomyces capitatus NRRL Y-17686

text: NRRL Y-17686, CBS 197.35


magcap-rna-depc

text: public

text: magcap-rna-depc

text: RNA sample from Magnusiomyces capitatus treated with DEPC for RNA structure probing

text: Sweden

text: wood pulp

text: Magnusiomyces capitatus NRRL Y-17686

text: Magnusiomyces capitatus NRRL Y-17686

text: NRRL Y-17686, CBS 197.35


text: State Key Laboratory of Cardiovascular Disease, National Center for Cardiovascular Diseases, Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College

text: public

text: human-gut

characteristic: broad-scale environmental context

text: Donor

text: human-gut

characteristic: environmental medium

text: China

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: local environmental context

text: human gut metagenome

text: Fecal Microbiota Transplantation on Hypertension: an exploratory, multi-center, randomized, blinded, placebo-controlled trial

characteristic: project name

text: human gut metagenome


XDC

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: XDC

text: human-gut

text: Donor

text: human-gut

text: China

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: XDC


LXY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LXY

text: human-gut

text: Donor

text: human-gut

text: China

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: LXY


LXX

text: public

text: LXX

characteristic: Submitter Id

text: human-gut

characteristic: collection date

text: Donor

text: human-gut

text: China

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: LXX


LX

text: public

text: LX

text: human-gut

text: Donor

characteristic: description

text: human-gut

text: China

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: LX


LJS

text: public

text: LJS

text: human-gut

text: Donor

text: human-gut

text: China

characteristic: geographic location (country and/or sea)

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: LJS


HK

text: public

text: HK

text: human-gut

text: Donor

text: human-gut

text: China

text: human-gut

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: HK


HJ

text: public

text: HJ

text: human-gut

text: Donor

text: human-gut

text: China

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: HJ

characteristic: title


HGR

text: public

text: HGR

text: human-gut

characteristic: broad-scale environmental context

text: Donor

text: human-gut

text: China

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: HGR


CHY

text: public

text: CHY

text: human-gut

text: Donor

text: human-gut

characteristic: environmental medium

text: China

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: CHY


text: public

text: human-gut

text: human-gut

text: China

characteristic: geographic location (latitude)

text: human-gut

text: human gut metagenome

text: human gut metagenome


text: NIPH

text: public

text: ELIXIR-Norway

characteristic: broker name

text: S. pyogenes

characteristic: common name

text: GAS routine sample

text: Norway

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood

text: Streptococcus pyogenes

text: Streptococcus pyogenes


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: NIPH

characteristic: INSDC center name

text: public

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

text: not provided

text: Homo sapiens

text: abscess

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: NIPH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

text: N. meningitidis

text: Norway

text: not provided

text: Homo sapiens

text: Spinal fluid

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NIPH

text: public

text: ELIXIR-Norway

characteristic: collection date

text: S. pyogenes

text: GAS routine sample

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: Pleural fluid

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: SIB

text: public

text: SIB

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Seju Kang, Ayazhan Dauletova, Camille Hablützel, Rachel McLeod, Daniela Yordanova, Jolinda de Korne, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Bern (BE)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/BE-ETHZ-H33220240319/2024

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-H22520240313/2024


text: SIB

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/TI-ETHZ-H10520240316/2024


text: SIB

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: metagenome

text: Bern (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-G33220240317/2024


text: SIB

text: public

text: SIB

text: Switzerland

text: SG

text: metagenome

characteristic: investigation type

text: Altenrhein (SG)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-G21920240318/2024


text: SIB

text: public

text: SIB

text: Switzerland

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/TI-ETHZ-G10520240313/2024


characteristic: ENA first public

text: SIB

text: public

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Bern (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/BE-ETHZ-F33220240314/2024

characteristic: title


characteristic: ENA-CHECKLIST

text: SIB

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: SG

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-F21920240316/2024


text: SIB

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: GR

text: metagenome

text: Chur (GR)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GR-ETHZ-F11720240317/2024


text: SIB

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

text: metagenome

text: Genève (GE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-E31620240319/2024


text: SIB

text: public

text: SIB

text: Switzerland

text: SG

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Altenrhein (SG)

characteristic: name of the sampling site

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-E21920240313/2024


text: SIB

text: public

text: SIB

text: Switzerland

text: GR

text: metagenome

text: Chur (GR)

text: wastewater metagenome

characteristic: organism

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

text: hCoV-19/Switzerland/GR-ETHZ-E11720240315/2024


characteristic: ENA first public

text: SIB

text: public

text: SIB

text: Switzerland

text: GE

text: metagenome

text: Genève (GE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/GE-ETHZ-D31620240317/2024


characteristic: ENA-CHECKLIST

text: SIB

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: LU

text: metagenome

text: Luzern (LU)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/LU-ETHZ-D21820240318/2024

characteristic: title


text: SIB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Switzerland

text: GR

text: metagenome

text: Chur (GR)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GR-ETHZ-D11720240312/2024


text: SIB

text: public

characteristic: Submitter Id

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BS

text: metagenome

text: Basel (BS)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BS-ETHZ-C41520240318/2024


text: SIB

text: public

text: SIB

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Seju Kang, Ayazhan Dauletova, Camille Hablützel, Rachel McLeod, Daniela Yordanova, Jolinda de Korne, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Genève (GE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-C31620240314/2024


text: SIB

text: public

text: SIB

text: Switzerland

text: LU

text: metagenome

text: Luzern (LU)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/LU-ETHZ-C21820240316/2024


characteristic: ENA first public

text: SIB

text: public

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

text: hCoV-19/Switzerland/ZH-ETHZ-C11020240317/2024


characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: BS

text: metagenome

text: Basel (BS)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/BS-ETHZ-B41520240315/2024


text: SIB

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: size of the catchment area

text: hCoV-19/Switzerland/BE-ETHZ-B32520240318/2024

characteristic: title


text: SIB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Switzerland

text: LU

text: metagenome

text: Luzern (LU)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/LU-ETHZ-B21820240313/2024


text: SIB

text: public

characteristic: Submitter Id

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-B11020240315/2024


text: SIB

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Basel (BS)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BS-ETHZ-A41520240313/2024


characteristic: ENA first public

text: SIB

text: public

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-A32520240316/2024


characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

text: hCoV-19/Switzerland/TI-ETHZ-A20520240318/2024


text: SIB

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-A11020240312/2024


text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

characteristic: collecting institution

unit: m

characteristic: depth

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

text: Cymodocea nodosa meadow next to a sailing club and public beach (high anthropogenic impact), muddy highly sulphidic sediment

characteristic: habitat

text: adult

characteristic: host life stage

text: Anodontia fragilis

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

characteristic: original collection location

text: ASG

characteristic: project name

characteristic: sample derived from

text: mollusc metagenome

text: NOT COLLECTED

text: 0b3df18b-a806-4e4e-9b8c-7e50e2fd4425-asg-metagenome

characteristic: title

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult bivalve tissue

text: Austria

characteristic: geographic location (country and/or sea)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

text: adult

text: Anodontia fragilis

text: not collected

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

characteristic: investigation type

text: Bivalve: Anodontia fragilis

text: marine benthic biome

text: mollusc metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Metamycoplasmataceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

text: ASG

text: Metamycoplasmataceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT COLLECTED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 1dc2f54d-770b-487c-9d02-97b64d73a1e6-asg-bin.191


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: habitat

text: adult

characteristic: host life stage

text: Anodontia fragilis

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

text: Bivalve: Anodontia fragilis

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

text: Sedimenticolaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

characteristic: original collection location

text: ASG

characteristic: project name

characteristic: sample derived from

text: Sedimenticolaceae bacterium

text: Pacbio Sequel II

text: NOT COLLECTED

text: PROKKA (version 1.14.5)

text: 9bf9d4b5-e8e9-4645-8227-4f7a8b40c34f-asg-bin.206

characteristic: title

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: depth

text: adult bivalve tissue

text: Austria

characteristic: geographic location (country and/or sea)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

text: adult

text: Anodontia fragilis

text: not collected

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

characteristic: investigation type

text: Bivalve: Anodontia fragilis

text: marine benthic biome

text: mollusc metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Candidatus Thiodiazotropha endolucinida

characteristic: organism

text: WHOLE ORGANISM

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

text: ASG

text: Candidatus Thiodiazotropha endolucinida

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT COLLECTED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: bf6bc920-79a4-469f-8f8a-ff22873e9c3b-asg-bin.5

text: xbAnoFrag1.Thiodiazotropha_endolucinida_1


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: habitat

text: adult

characteristic: host life stage

text: Anodontia fragilis

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: BENEDICT YUEN

text: UNIVERSITY OF VIENNA

text: metagenome-assembled genome

text: Bivalve: Anodontia fragilis

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

text: Rhodococcus qingshengii

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: SLOVENIA | PIRAN |BERNARDIN SQUARE

characteristic: original collection location

text: ASG

characteristic: project name

characteristic: sample derived from

text: Rhodococcus qingshengii

text: Pacbio Sequel II

text: NOT COLLECTED

text: PROKKA (version 1.14.5)

text: 8c9d4bc5-c036-4ce1-8c35-2cb9244593b9-asg-bin.283

characteristic: title

characteristic: tolid


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: aquatic biome

characteristic: broad-scale environmental context

text: LAETITIA WILKINS |. BENEDICT YUEN

text: MPI FOR MARINE MICROBIOLOGY | UNIVERSITY OF VIENNA

characteristic: collecting institution

characteristic: collection date

text: adult bivalve tissue

text: Austria

characteristic: geographic location (country and/or sea)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

text: intertidal, rocky rubble, mud, macroalgae

text: adult

text: Ctena cf. galapagana NHMUK 20210086

text: not collected

text: John Taylor

text: NATURAL HISTORY MUSEUM | LONDON | UK

text: marine benthic biome

text: mollusc metagenome

characteristic: organism

text: WHOLE ORGANISM

text: COSTA RICA | GUANACASTE | BAHIA SANTA ELENA

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: Shovel

characteristic: sample collection method

text: mollusc metagenome

text: 534931b2-25a9-4cd3-a8a2-65ea239acb60-asg-metagenome


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

text: University of Vienna (Mollusc)

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

text: LAETITIA WILKINS |. BENEDICT YUEN

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: habitat

text: adult

characteristic: host life stage

text: Ctena cf. galapagana NHMUK 20210086

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host taxid

text: John Taylor

text: NATURAL HISTORY MUSEUM | LONDON | UK

text: metagenome-assembled genome

characteristic: investigation type

text: Bivalve: Ctena cf. galapagana NHMUK 20210086

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Spirochaetaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

text: ASG

characteristic: project name

text: Shovel

characteristic: sample derived from

text: Spirochaetaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 66d5f01a-361c-4d6e-9cc1-00062d29de62-asg-MAGScoT_cleanbin_000003

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LAETITIA WILKINS |. BENEDICT YUEN

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Ctena cf. galapagana NHMUK 20210086

characteristic: host scientific name

text: not collected

text: John Taylor

text: NATURAL HISTORY MUSEUM | LONDON | UK

text: metagenome-assembled genome

text: marine benthic biome

text: mollusc metagenome

text: Rhodococcus qingshengii

characteristic: organism

text: WHOLE ORGANISM

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: Shovel

characteristic: sample collection method

text: Rhodococcus qingshengii

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 6dabea1c-7741-48bc-a34a-7d6fb9ada6bf-asg-MAGScoT_cleanbin_000006


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LAETITIA WILKINS |. BENEDICT YUEN

characteristic: collecting institution

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

text: adult bivalve tissue

text: Austria

text: VIENNA | UNIVERSITY OF VIENNA

text: adult

text: Ctena cf. galapagana NHMUK 20210086

text: not collected

characteristic: host sex

characteristic: host taxid

text: John Taylor

text: NATURAL HISTORY MUSEUM | LONDON | UK

text: metagenome-assembled genome

characteristic: investigation type

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Candidatus Thiodiazotropha sp.

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

text: ASG

characteristic: project name

text: Shovel

characteristic: sample derived from

text: Candidatus Thiodiazotropha sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: a40d02b7-fb89-4f62-b540-3daaa72e3dda-asg-MAGScoT_cleanbin_000001

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LAETITIA WILKINS |. BENEDICT YUEN

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Ctena cf. galapagana NHMUK 20210086

characteristic: host scientific name

text: not collected

text: John Taylor

text: NATURAL HISTORY MUSEUM | LONDON | UK

text: metagenome-assembled genome

text: marine benthic biome

text: mollusc metagenome

text: Spirochaetaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: Shovel

characteristic: sample collection method

text: Spirochaetaceae bacterium

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: taxonomic classification defined by topology and ANI

text: 7d23c4d1-5616-428e-a0a5-f106e7fd6841-asg-MAGScoT_cleanbin_000002


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LAETITIA WILKINS |. BENEDICT YUEN

characteristic: collecting institution

text: adult bivalve tissue

text: Austria

text: VIENNA | UNIVERSITY OF VIENNA

text: adult

text: Ctena cf. galapagana NHMUK 20210086

text: not collected

characteristic: host sex

characteristic: host taxid

text: John Taylor

text: NATURAL HISTORY MUSEUM | LONDON | UK

text: metagenome-assembled genome

characteristic: investigation type

text: marine benthic biome

characteristic: local environmental context

text: mollusc metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Spirochaetota bacterium

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

characteristic: original collection location

text: ASG

characteristic: project name

text: Shovel

characteristic: sample derived from

text: Spirochaetota bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 0a1bf947-7140-4121-940b-caa5add038ca-asg-MAGScoT_cleanbin_000004

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: LAETITIA WILKINS |. BENEDICT YUEN

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult bivalve tissue

characteristic: environmental medium

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: VIENNA | UNIVERSITY OF VIENNA

characteristic: geographic location (region and locality)

characteristic: habitat

text: adult

characteristic: host life stage

text: Ctena cf. galapagana NHMUK 20210086

characteristic: host scientific name

text: not collected

text: John Taylor

text: NATURAL HISTORY MUSEUM | LONDON | UK

text: metagenome-assembled genome

text: marine benthic biome

text: mollusc metagenome

text: Candidatus Thiodiazotropha sp.

characteristic: organism

text: WHOLE ORGANISM

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

text: Shovel

characteristic: sample collection method

text: Candidatus Thiodiazotropha sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 1bf225b1-b32a-41bb-bbb2-5726f9edb867-asg-MAGScoT_cleanbin_000005


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Seju Kang, Ayazhan Dauletova, Camille Hablützel, Rachel McLeod, Daniela Yordanova, Jolinda de Korne, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

text: BE

text: metagenome

characteristic: investigation type

text: Laupen (BE)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/BE-ETHZ-C52520230511/2023

characteristic: title


text: SIB

text: public

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/TI-ETHZ-D10520230513/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-D21020230514/2023


text: SIB

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: GE

text: metagenome

text: Genève (GE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-D31620230515/2023


text: SIB

text: public

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: GR

text: metagenome

characteristic: investigation type

text: Chur (GR)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GR-ETHZ-D41720230516/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

text: hCoV-19/Switzerland/BE-ETHZ-D52520230512/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/TI-ETHZ-E10520230514/2023

characteristic: title


text: SIB

text: public

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-E21020230515/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: GE

text: metagenome

text: Genève (GE)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-E31620230516/2023


text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

text: SG

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-E41920230510/2023


text: SIB

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-E52520230513/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: TI

text: metagenome

characteristic: investigation type

text: Lugano (TI)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/TI-ETHZ-F10520230515/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: ZH

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

characteristic: surveillance target

text: hCoV-19/Switzerland/ZH-ETHZ-F21020230516/2023


text: SIB

text: public

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GR

text: metagenome

text: Chur (GR)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GR-ETHZ-F31720230510/2023

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: SG

characteristic: geographic location (region and locality)

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/SG-ETHZ-F41920230511/2023


text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-F52520230514/2023


text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Christoph Ort, Tamar Kohn, Timothy R. Julian, Lea Caduff, Seju Kang, Ayazhan Dauletova, Camille Hablützel, Rachel McLeod, Daniela Yordanova, Jolinda de Korne, Charlie Gan, Catharine Aquino, Lennart Opitz, Tim Sykes, Katharina Jahn, Pelin Burcak Icer, David Dreifuss, Ivan Topolsky, Lara Fuhrmann, Kim Philipp Jablonski, Anika John, Matteo Carrara, Franziska Singer, Chaoran Chen, Sarah Nadeau, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: TI

text: metagenome

text: Lugano (TI)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/TI-ETHZ-G10520230516/2023


text: SIB

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: GE

text: metagenome

characteristic: investigation type

text: Genève (GE)

characteristic: name of the sampling site

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-G21620230510/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: GR

text: metagenome

text: Chur (GR)

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

characteristic: size of the catchment area

text: hCoV-19/Switzerland/GR-ETHZ-G31720230511/2023


text: SIB

text: public

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

text: metagenome

text: Altenrhein (SG)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: surveillance target

text: hCoV-19/Switzerland/SG-ETHZ-G41920230512/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SIB

text: public

text: SIB

text: Switzerland

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/BE-ETHZ-G52520230515/2023

characteristic: title


text: SIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: metagenome

text: Zürich (ZH)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/ZH-ETHZ-H11020230510/2023


text: SIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: GE

text: metagenome

text: Genève (GE)

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GE-ETHZ-H21620230511/2023


text: SIB

text: public

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: GR

text: metagenome

characteristic: investigation type

text: Chur (GR)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

text: hCoV-19/Switzerland/GR-ETHZ-H31720230512/2023


text: SIB

text: public

text: SIB

text: Switzerland

text: SG

text: metagenome

text: Altenrhein (SG)

characteristic: name of the sampling site

text: wastewater metagenome

characteristic: population size of the catchment area

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: sewage type

text: hCoV-19/Switzerland/SG-ETHZ-H41920230513/2023


text: SIB

text: public

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: metagenome

text: Laupen (BE)

text: wastewater metagenome

text: wastewater metagenome

text: municipal wastewater treatment plan

characteristic: size of the catchment area

text: hCoV-19/Switzerland/BE-ETHZ-H52520230516/2023


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: sponge metagenome

text: NOT PROVIDED

text: bba5960c-1bcd-434f-b04d-6e1ad41d9ebd-asg-metagenome

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Bryobacterales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Bryobacterales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 3a6eea47-c3db-4900-80b8-59df4715d43f-asg-MAGScoT_cleanbin_000053

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Bryobacterales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Bryobacterales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: d950606d-d841-4759-8f1a-9bc794760878-asg-MAGScoT_cleanbin_000110

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Vicinamibacterales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Vicinamibacterales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: f2f51bde-026c-4b37-9209-2344b543bbc1-asg-MAGScoT_cleanbin_000070

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: No

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Acidimicrobiia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Acidimicrobiia bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: a6dcdfb1-6c9a-4c65-a0e3-c0062a050b4a-asg-MAGScoT_cleanbin_000088

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Rhodothermales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Rhodothermales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: e52cfe36-7792-4e70-b003-4519d1043e89-asg-MAGScoT_cleanbin_000104

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Dehalococcoidia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: a1dccf2d-0d01-42a0-b398-2581cca5ccdb-asg-MAGScoT_cleanbin_000077

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Dehalococcoidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 946b0dd4-d99f-45d3-bf39-66ede7aa2ad7-asg-MAGScoT_cleanbin_000095

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Dehalococcoidia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic classification fully defined by topology

text: dd7dc8ef-b43a-4919-9d89-69be2a3d747a-asg-MAGScoT_cleanbin_000089

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: No

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Dehalococcoidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 8f99fdbf-64f1-4737-8738-fda6bc6710fb-asg-MAGScoT_cleanbin_000093

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: No

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Dehalococcoidia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: e6663373-dc6d-4b5f-b6ba-1e773496e2fb-asg-MAGScoT_cleanbin_000097

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Dehalococcoidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: e5ef8188-de84-441b-a04b-3d2f14ba8d09-asg-MAGScoT_cleanbin_000082

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Dehalococcoidia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: fdc05ce3-e6d2-4d62-8043-67935e81556b-asg-MAGScoT_cleanbin_000086

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: No

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Dehalococcoidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 8843a105-af69-4123-845c-7b50a9dc73bc-asg-MAGScoT_cleanbin_000106

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Dehalococcoidia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: taxonomic classification defined by topology and ANI

text: 832c4e96-8c22-4f7f-838e-5bd530382f6d-asg-MAGScoT_cleanbin_000074

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: No

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Dehalococcoidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 17d9e527-2d88-46dc-ba84-bacbad9fcb45-asg-MAGScoT_cleanbin_000075

characteristic: title


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

text: commercial sponge

characteristic: common name

characteristic: depth

text: adult sponge tissue

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: La Ciotat

text: semi-dark cave

characteristic: habitat

text: adult

characteristic: host life stage

text: Spongia officinalis

characteristic: host scientific name

text: not applicable

characteristic: host sex

characteristic: host taxid

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

text: Sponge: Spongia officinalis

text: marine benthic biome

characteristic: local environmental context

text: sponge metagenome

text: Dehalococcoidia bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

characteristic: sample derived from

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 990217b8-1f39-4396-b4e9-eb74acd515d6-asg-MAGScoT_cleanbin_000072

characteristic: tolid


text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: THIERRY PEREZ

text: CNRS

characteristic: collecting institution

characteristic: collection date

text: commercial sponge

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult sponge tissue

text: France

characteristic: geographic location (country and/or sea)

text: La Ciotat

characteristic: geographic location (region and locality)

text: semi-dark cave

text: adult

text: Spongia officinalis

text: not applicable

text: THIERRY PEREZ

text: CNRS

text: metagenome-assembled genome

characteristic: investigation type

text: Sponge: Spongia officinalis

text: marine benthic biome

text: sponge metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Dehalococcoidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: e51d91dc-1b15-4982-ab62-8e069977a1e1-asg-MAGScoT_cleanbin_000078

characteristic: title