status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: IP

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: INRAE (France)

characteristic: collection date

text: ST38_1 strain used for experimental evolution

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: sewage

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: JEB8 MIAE 10523

characteristic: strain

characteristic: title


text: IP

text: public

text: INRAE (France)

text: ST38_2 strain used for experimental evolution

text: France

text: water

text: Escherichia coli

text: Escherichia coli

text: HET6 MIAE 10510


text: IP

text: public

text: INRAE (France)

text: ST38_3 strain used for experimental evolution

text: France

text: sewage

text: Escherichia coli

text: Escherichia coli

text: FFFEB2 MIAE 11482


text: IP

text: public

text: Fr-NRC for Antibiotic resistance

text: K.pneumoniae strain used as a donor of pOXA-48_3

text: France

text: Ile-de-France

characteristic: geographic location (region and locality)

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: IP

text: public

text: Fr-NRC for Antibiotic resistance

text: K.pneumoniae strain used as a donor of pOXA-48_1

text: France

text: Ile-de-France

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: IP

text: public

text: Fr-NRC for Antibiotic resistance

text: K.pneumoniae strain used as a donor of pOXA-48_2

text: France

text: Ile-de-France

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: ETH ZURICH

text: public

text: wood pink

characteristic: common name

text: Switzerland

text: Dianthus sylvestris

text: Dianthus sylvestris


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus anatolicus

text: Dianthus anatolicus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus arenarius

text: Dianthus arenarius


text: ETH ZURICH

text: public

text: grass pink

text: Italy

text: Dianthus armeria

text: Dianthus armeria


text: ETH ZURICH

text: public

text: grass pink

text: not applicable

text: Dianthus armeria

text: Dianthus armeria


text: ETH ZURICH

text: public

text: wood pink

text: Italy

text: Dianthus sylvestris

text: Dianthus sylvestris


text: ETH ZURICH

text: public

text: Spain

text: Dianthus broteri

text: Dianthus broteri


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus carthusianorum

text: Dianthus carthusianorum


text: ETH ZURICH

text: public

text: Switzerland

text: Dianthus carthusianorum

text: Dianthus carthusianorum


text: ETH ZURICH

text: public

text: maiden pink

text: not applicable

text: Dianthus deltoides

text: Dianthus deltoides


text: ETH ZURICH

text: public

text: maiden pink

text: Switzerland

text: Dianthus deltoides

text: Dianthus deltoides


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus fruticosus

text: Dianthus fruticosus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus furcatus

text: Dianthus furcatus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus giganteus

text: Dianthus giganteus


text: ETH ZURICH

text: public

text: Switzerland

text: Dianthus glacialis

text: Dianthus glacialis


text: ETH ZURICH

text: public

text: cheddar pink

text: not applicable

text: Dianthus gratianopolitanus

text: Dianthus gratianopolitanus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus plumarius

text: Dianthus plumarius


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus juniperinus

text: Dianthus juniperinus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus lusitanus

text: Dianthus lusitanus


text: ETH ZURICH

text: public

text: Spain

text: Dianthus lusitanus

text: Dianthus lusitanus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus monspessulanus

text: Dianthus monspessulanus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus pavonius

text: Dianthus pavonius


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus pontederae

text: Dianthus pontederae


text: ETH ZURICH

text: public

text: Spain

text: Dianthus pungens

text: Dianthus pungens


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus seguieri

text: Dianthus seguieri


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus serotinus

text: Dianthus serotinus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus strictus

text: Dianthus strictus


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus subacaulis

text: Dianthus subacaulis


text: ETH ZURICH

text: public

text: Switzerland

text: Dianthus superbus

text: Dianthus superbus


text: ETH ZURICH

text: public

text: wood pink

text: Switzerland

text: Dianthus sylvestris

text: Dianthus sylvestris


text: ETH ZURICH

text: public

text: wood pink

text: not applicable

text: Dianthus sylvestris

text: Dianthus sylvestris


text: ETH ZURICH

text: public

text: not applicable

text: Dianthus viscidus

text: Dianthus viscidus


text: Klinik und Poliklinik für Innere Medizin II Klinikum rechts der Isar der Technischen Universität München

text: public

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

text: Protocols: Pancreatic tissue was collected from 10 week old mice Acute pancreatitis was induced as published (Jensen et al., Gastroenterology 2005) Maxwell 16 Tissue LEV Total RNA Purification Kit was used for RNA extraction according to the manufacturer's instructions (Promega) Library preparation for bulk 3’-sequencing of poly(A)-RNA was done as described previously (Parekh et al., 2016) barcoded cDNA of each sample was generated with a Maxima RT polymerase (Thermo Fisher) using oligo-dT primer containing barcodes, unique molecular identifiers (UMIs) and an adapter. 5’ ends of the cDNAs were extended by a template switch oligo (TSO) and after pooling of all samples full-length cDNA was amplified with primers binding to the TSO-site and the adapter. cDNA was tagmented with the Nextera XT kit (Illumina) and 3’-end-fragments finally amplified using primers with Illumina P5 and P7 overhangs.

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: organism part

text: Mus musculus

characteristic: stimulus

text: C57BL6 / FVB/129


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: C57BL6 / FVB/129


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

characteristic: description

text: wild type genotype

text: not collected

text: not applicable

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: acute pancreatitis

text: C57BL6 / FVB/129


text: public

text: ArrayExpress

text: not collected

text: house mouse

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pancreas

text: Mus musculus

text: acute pancreatitis

text: C57BL6 / FVB/129

characteristic: strain

characteristic: title


text: SC

text: public

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate


text: SC

text: public

text: SC

characteristic: broker name

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: SC

text: public

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: United Kingdom

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INSTITUT PASTEUR DE PARIS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

tag: Namespace:INSTITUT PASTEUR DE PARIS

text: Bacterial culture

text: Italy

text: healthy

text: fox

text: Istituto Zooprofilattico Sperimentale Puglia e Basilicata, Antonio Parisi

text: nasopharynx

text: Bordetella bronchiseptica

text: Bordetella bronchiseptica

text: B. bronchiseptica strain


LL

text: GuangXi University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LL

tag: Namespace:GuangXi University

characteristic: Submitter Id

text: mixed leaf samples of three low sugar varities: 12-17204, 15-701, 16-104

text: Saccharum hybrid cultivar

text: Saccharum hybrid cultivar

text: low-leaf


LS

text: GuangXi University

text: public

text: LS

text: mixed stem samples of three low sugar varities: 12-17204, 15-701, 16-104

characteristic: description

text: Saccharum hybrid cultivar

text: Saccharum hybrid cultivar

text: low-stem


HL

text: GuangXi University

text: public

text: HL

text: mixed leaf samples of three high sugar varities: YT93-159, GT35, ROC22

text: Saccharum hybrid cultivar

characteristic: organism

text: Saccharum hybrid cultivar

text: high-leaf


HS

text: GuangXi University

text: public

text: HS

text: mixed stem samples of three high sugar varities: YT93-159, GT35, ROC22

text: Saccharum hybrid cultivar

text: Saccharum hybrid cultivar

text: high-stem

characteristic: title


text: UDS

text: public

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae, strain AAB, library12

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, AAQ-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAD, library16

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, AAR-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAE, library14

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, AAS-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAG, library17

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, AAV-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAH, library7

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, AAV-re2


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAI, library10

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABF-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAK, library8

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABG-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAL, library7

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABH-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAM, library1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABK-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAN, library14

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABL-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAP, library7

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABP-re1


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAQ, library16

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABP-re2


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAR, library5

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABP-re3


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAS, library5

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ABS-re2


text: UDS

text: public

text: baker's yeast

text: Saccharomyces cerevisiae, strain AAT, library4

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae, ACA-re1


text: Carbamazepine

characteristic: Compound

text: 169 uM

characteristic: Concentration

text: 168 h

characteristic: Exposure time

text: mixed

characteristic: Gender

text: TissUse GmbH

text: public

tag: Namespace:TissUse GmbH

text: repeated dose

characteristic: Treatment

characteristic: Treatment scheme

text: EU-ToxRisk DCC

characteristic: broker name

text: Neurospheroids, Proximal Tubular like cells, Podocyte like cells, Microliver tissues, EpiIntestinal model

text: human

text: Homo sapiens

text: Homo sapiens


text: - nan

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: 168 h

characteristic: External Id

text: mixed

text: TissUse GmbH

text: public

text: repeated dose

text: EU-ToxRisk DCC

text: human

text: Homo sapiens

text: Homo sapiens


text: Haloperidol

text: 1.5 mM

text: 168 h

text: mixed

text: TissUse GmbH

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: repeated dose

text: EU-ToxRisk DCC

text: human

text: Homo sapiens

text: Homo sapiens


text: INIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa


text: female

characteristic: ArrayExpress-SEX

text: Milnesium variefidum

characteristic: ArrayExpress-SPECIES

text: Female

characteristic: GENDER

text: SC

text: public

text: Milnesium variefidum

characteristic: common name

text: Milnesium variefidum

characteristic: organism

text: Milnesium variefidum

characteristic: title


text: female

text: Milnesium eurystomum

text: Female

text: SC

text: public

text: Milnesium eurystomum

text: Milnesium eurystomum

text: Milnesium eurystomum


text: male

text: Milnesium eurystomum

text: Male

text: SC

text: public

text: Milnesium eurystomum

text: Milnesium eurystomum

text: Milnesium eurystomum


text: female

text: Diploechiniscus oihonnae

text: Female

text: SC

text: public

text: Diploechiniscus oihonnae

text: Diploechiniscus oihonnae

text: Diploechiniscus oihonnae


text: unknown

text: Macrobiotus scoticus

text: Unknown

text: SC

text: public

text: Macrobiotus scoticus

text: Macrobiotus scoticus

text: Macrobiotus scoticus


text: ETH ZURICH

text: public

tag: Namespace:ETH ZURICH

text: Dianthus sylvestris

text: Dianthus sylvestris

text: sample for genome sequencing


text: ETH ZURICH

text: public

text: Dianthus sylvestris

text: Dianthus sylvestris


text: ETH ZURICH

text: public

text: Dianthus carthusianorum

text: Dianthus carthusianorum