status: PUBLIC

characteristic: ENA first public

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characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: portal vein embolization

characteristic: clinical history

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characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Human adult liver tissue samples were obtained from macroscopically healthy tissue that remained from resected human liver of patients with primary or secondary liver tumors or benign liver diseases with or without pretreatment with portal vein embolization. Informed consent of the patients for the use of tissue for research purposes was obtained according to the ethical guidelines of Leipzig University Hospital (006/17-ek, 21 March 2017, revised and renewed 12 February 2019). Acquired tissue from portal vein embolized livers included samples of regenerating (R) and embolized (E) tissue, whereas tissue samples from benign liver diseases were defined as quiescent healthy controls (H). Single stranded cDNA was generated in droplets according to 10X Genomics 3' Single cell Kit v2 and v3 guide instructions. Quality and quantity of the resulting cDNA was assessed using Agilent's Bioanalyzer High Sensitivity DNA assay. cDNA libraries were prepared as described in the 10X Genomics user guide (Single Cell 3′ Reagent Kits User Guide PN-120233, 10X Genomics). Libraries were quantified and checked for size distribution using Agilent Bioanalyzer DNA High Sensitivity Assays

characteristic: description

text: adult

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characteristic: individual

text: not applicable

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text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: parenchymal

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text: Homo sapiens

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characteristic: ENA first public

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text: Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany

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text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

text: adult

text: normal

text: individual 9

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: male


text: public

characteristic: Submitter Id

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text: ArrayExpress

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text: hepatocyte

text: portal vein embolization

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text: embolized tissue

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text: human

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text: adult

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text: individual 9

text: not applicable

text: Homo sapiens

text: Homo sapiens

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text: non-parenchymal

text: Homo sapiens

text: male


text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

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characteristic: developmental stage

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characteristic: individual

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text: Homo sapiens

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text: Homo sapiens

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characteristic: ENA first public

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text: public

text: ArrayExpress

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text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

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text: ArrayExpress

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text: non-parenchymal

text: Homo sapiens

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text: public

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text: Homo sapiens

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text: Homo sapiens

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text: parenchymal

text: Homo sapiens

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characteristic: ENA first public

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text: public

text: ArrayExpress

text: hepatocyte

text: normal

text: normal tissue

text: human

text: adult

text: normal

text: individual 3

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: non-parenchymal

characteristic: sampling site

text: Homo sapiens

text: female


text: public

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text: ArrayExpress

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text: Homo sapiens

text: Homo sapiens

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text: crude

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characteristic: ENA first public

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text: public

text: ArrayExpress

text: hepatocyte

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text: Homo sapiens

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text: Homo sapiens

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text: crude

text: Homo sapiens

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text: public

characteristic: INSDC status

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text: ArrayExpress

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text: hepatocyte

text: normal

text: normal tissue

text: human

text: adult

text: normal

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text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: non-parenchymal

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text: Homo sapiens

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text: public

text: ArrayExpress

text: hepatocyte

text: normal

characteristic: clinical history

text: normal tissue

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text: human

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text: adult

characteristic: developmental stage

text: normal

text: individual 1

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: female

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characteristic: ENA first public

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characteristic: External Id

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text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

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text: human

text: adult

text: normal

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text: individual 7

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: ArrayExpress

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text: hepatocyte

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text: human

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text: individual 7

text: not applicable

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text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

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text: public

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text: hepatocyte

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characteristic: clinical history

text: embolized tissue

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text: human

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text: adult

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text: normal

text: individual 7

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: non-parenchymal

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text: Homo sapiens

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characteristic: ENA first public

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text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

text: adult

text: normal

text: individual 7

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: non-parenchymal

text: Homo sapiens

text: female

characteristic: sex

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text: public

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text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: portal vein embolization

text: embolized tissue

text: human

text: adult

text: normal

characteristic: disease

text: individual 8

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: female


text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

characteristic: clinical history

text: regenerating tissue

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text: human

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text: adult

characteristic: developmental stage

text: normal

text: individual 8

text: not applicable

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text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: embolized tissue

text: human

text: adult

text: normal

text: individual 8

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: non-parenchymal

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text: Homo sapiens

text: female


text: public

characteristic: INSDC status

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characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

text: adult

text: normal

text: individual 8

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: non-parenchymal

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

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text: embolized tissue

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text: human

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text: adult

characteristic: developmental stage

text: normal

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text: individual 4

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

text: adult

text: normal

text: individual 4

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: female


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: portal vein embolization

text: embolized tissue

text: human

text: adult

text: normal

text: individual 4

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: non-parenchymal

characteristic: sampling site

text: Homo sapiens

text: female


text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

characteristic: clinical history

text: regenerating tissue

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text: human

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text: adult

characteristic: developmental stage

text: normal

text: individual 4

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: non-parenchymal

text: Homo sapiens

text: female

characteristic: sex

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: embolized tissue

text: human

text: adult

text: normal

characteristic: disease

text: individual 5

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: male


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

text: adult

text: normal

text: individual 5

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

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text: public

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text: hepatocyte

text: portal vein embolization

characteristic: clinical history

text: embolized tissue

characteristic: clinical information

text: human

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text: adult

characteristic: developmental stage

text: normal

text: individual 5

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: non-parenchymal

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

text: adult

text: normal

text: individual 5

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: non-parenchymal

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: portal vein embolization

text: embolized tissue

text: human

text: adult

text: normal

characteristic: disease

text: individual 6

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: male


text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

characteristic: clinical history

text: regenerating tissue

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: individual 6

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: parenchymal

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

text: hepatocyte

text: portal vein embolization

text: embolized tissue

text: human

text: adult

text: normal

text: individual 6

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: non-parenchymal

characteristic: sampling site

text: Homo sapiens

text: male


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: portal vein embolization

text: regenerating tissue

text: human

text: adult

text: normal

text: individual 6

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: liver

text: non-parenchymal

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


text: CEB

text: public

characteristic: collection date

text: Aerobic biodegradation assays - Eukaryotic community

characteristic: description

text: Portugal

characteristic: geographic location (country and/or sea)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: PCL degradation under aerobic conditions


characteristic: ENA first public

text: CEB

text: public

text: Aerobic biodegradation assays - Prokaryotic community

text: Portugal

text: bioreactor sludge metagenome

characteristic: organism

text: bioreactor sludge metagenome


characteristic: ENA-CHECKLIST

text: CEB

text: public

text: Anaerobic biodegradation assays - Prokaryotic community

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: PCL degradation under anaerobic conditions


text: CEB

characteristic: INSDC center name

text: public

text: Leachate inoculum - Prokaryotic community

text: Portugal

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Leachate inoculum


text: The James Hutton Institute

text: public

text: potato

characteristic: common name

text: United Kingdom

text: Solanum tuberosum

text: Solanum tuberosum


characteristic: External Id

characteristic: INSDC last update

text: public

tag: Namespace:Natural Resources Institute Finland (Luke)

text: soil sample from boreal arable field with long-term organic farming of dairy crop

text: cultivated arable field

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Finland

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: OrgAni

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Toholampi


characteristic: ENA first public

text: Natural Resources Institute Finland (Luke)

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: cultivated arable field

text: field

text: soil

text: Finland

characteristic: geographic location (country and/or sea)

text: metagenome

text: soil metagenome

characteristic: organism

text: OrgAni

text: soil metagenome

text: Illumina

text: soil

text: Toholampi

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: soil sample from boreal arable field with long-term conventional farming of dairy crop

text: cultivated arable field

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Finland

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: OrgAni

text: soil metagenome

text: Illumina

text: soil

text: Toholampi


characteristic: ENA first public

text: public

text: soil sample from boreal arable field with long-term organic farming of cereal crop

text: cultivated arable field

text: field

text: soil

text: Finland

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: OrgAni

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Toholampi


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil sample from boreal arable field with long-term conventional farming of cereal crop

characteristic: description

text: cultivated arable field

text: field

text: soil

text: Finland

characteristic: geographic location (country and/or sea)

text: metagenome

text: soil metagenome

characteristic: organism

text: OrgAni

text: soil metagenome

text: Illumina

text: soil

text: Toholampi

characteristic: title


text: NPC

text: Not applicable

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Human

characteristic: ArrayExpress-SPECIES

text: QIAcube Batch 59

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Male

characteristic: GENDER

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Not applicable

characteristic: PHENOTYPE

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: NPC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 65

characteristic: ENA first public

text: Male

text: SC

text: public

characteristic: INSDC status

text: Not applicable

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 66

text: Male

text: SC

text: public

text: Not applicable

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 67

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 68

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 69

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 70

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 71

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 60

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 61

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 62

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 63

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: NPC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 64

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 72

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 73

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens


text: iPSC

text: Not applicable

text: male

text: Human

text: QIAcube Batch 74

text: Male

text: SC

text: public

text: Not applicable

text: human

text: Homo sapiens

text: Homo sapiens