text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-JE56-12-14-m2-bin37 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Asaia bogorensis

characteristic: project name

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text: Asaia bogorensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Biology Centre CAS

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-JE56-12-15-m2-bin38 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

unit: DD

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Brevundimonas vancanneytii

characteristic: organism

text: Brevundimonas vancanneytii

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

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text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-JE56-12-16-m2-bin39 - Bacteria; Candidatus Eremiobacteraeota; Candidatus Eremiobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: bacterium UBP9_UBA4705

characteristic: project name

characteristic: sample derived from

text: bacterium UBP9_UBA4705

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-JE56-12-1-mx-bin557 - Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Flavobacterium psychrophilum

characteristic: organism

text: Flavobacterium psychrophilum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

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text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-JE56-12-2-m2-bin40 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Acidovorax caeni

characteristic: project name

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text: Acidovorax caeni

text: Illumina NovaSeq 6000

text: multi-marker approach

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-JE56-12-2-mx-bin558 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hydrogenophaga intermedia

characteristic: organism

text: Hydrogenophaga intermedia

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-JE56-12-3-mx-bin559 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

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text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

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text: public

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characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-JE56-12-4-mx-bin560 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-JE56-12-5-mx-bin561 - Bacteria; Acidobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Sulfopaludibacter sp. SbA3

characteristic: project name

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text: Candidatus Sulfopaludibacter sp. SbA3

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

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text: public

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-JE56-12-7-mx-bin562 - Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chryseobacterium gleum

characteristic: organism

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

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text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-JE56-12-9-mx-bin563 - Bacteria; Actinobacteria; Actinobacteria; Micrococcales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Auritidibacter sp. Marseille-P8566

characteristic: project name

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text: Auritidibacter sp. Marseille-P8566

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-JJ2111-54-1-m1-bin258 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Acidovorax caeni

characteristic: organism

text: Acidovorax caeni

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

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text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-JJ2111-54-2-m1-bin259 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Cyanobium sp. NIES-981

characteristic: project name

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text: Cyanobium sp. NIES-981

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-JJ2111-54-3-m2-bin41 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hydrogenophaga intermedia

characteristic: organism

text: Hydrogenophaga intermedia

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

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characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K11792-97-1-m1-bin260 - Bacteria; Proteobacteria; Deltaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Syntrophobacter sp. SbD2

characteristic: project name

characteristic: sample derived from

text: Syntrophobacter sp. SbD2

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

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characteristic: External Id

text: Biology Centre CAS

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text: public

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text: MEGAHIT

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text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K11792-97-2-m1-bin261 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Azorhizobium sp. AG788

characteristic: organism

text: Azorhizobium sp. AG788

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K11792-97-2-mx-bin565 - Bacteria; Bacteroidetes; Sphingobacteriia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingobacterium thalpophilum

characteristic: project name

characteristic: sample derived from

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K11792-97-4-m1-bin262 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K11792-97-4-m2-bin42 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bosea thiooxidans

characteristic: project name

characteristic: sample derived from

text: Bosea thiooxidans

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K11792-97-7-m2-bin43 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Cyanobium sp. NIES-981

characteristic: organism

text: Cyanobium sp. NIES-981

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D3-5-012-mx-bin569 - Bacteria; Ignavibacteriae; Ignavibacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Melioribacter roseus P3M-2

characteristic: project name

characteristic: sample derived from

text: Melioribacter roseus P3M-2

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D3-5-13-m2-bin44 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Phenylobacterium deserti

characteristic: organism

text: Phenylobacterium deserti

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D3-5-2-m1-bin263 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingomonas paucimobilis

characteristic: project name

characteristic: sample derived from

text: Sphingomonas paucimobilis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D3-5-3-m1-bin264 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Polaromonas sp. YR568

characteristic: organism

text: Polaromonas sp. YR568

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D3-5-3-m2-bin45 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Ferrovibrio

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Ferrovibrio terrae

characteristic: project name

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text: Ferrovibrio terrae

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D3-5-4-m1-bin265 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Rhizobium sp. Q54

characteristic: organism

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D3-5-5-m1-bin266 - Bacteria; Bacteroidetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

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text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D3-5-5-mx-bin566 - Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D3-5-6-mx-bin567 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D3-5-8-mx-bin568 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Asaia bogorensis

characteristic: organism

text: Asaia bogorensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D3-5-9-m1-bin267 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D7-64-1-m2-bin46 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bradyrhizobium ivorense

characteristic: organism

text: Bradyrhizobium ivorense

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D7-64-1-mx-bin570 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Cyanobium sp. NIES-981

characteristic: project name

characteristic: sample derived from

text: Cyanobium sp. NIES-981

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D7-64-2-mx-bin571 - Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Phycisphaera mikurensis NBRC 102666

characteristic: organism

text: Phycisphaera mikurensis NBRC 102666

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D7-64-3-m2-bin47 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Mesorhizobium carmichaelinearum

characteristic: project name

characteristic: sample derived from

text: Mesorhizobium carmichaelinearum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1D7-64-3-mx-bin572 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Ramlibacter sp. 2FC

characteristic: organism

text: Ramlibacter sp. 2FC

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1D7-64-7-mx-bin573 - Bacteria; Bacteroidetes; Sphingobacteriia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingobacterium thalpophilum

characteristic: project name

characteristic: sample derived from

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1HD4-379-1-mx-bin574 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1HD4-379-2-mx-bin575 - Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Zoogloeaceae; Thauera

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thauera chlorobenzoica

characteristic: project name

characteristic: sample derived from

text: Thauera chlorobenzoica

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1HD4-379-4-mx-bin576 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Sediminibacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sediminibacterium ginsengisoli

characteristic: organism

text: Sediminibacterium ginsengisoli

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1HD4-379-6-m2-bin48 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1HD4-379-6-mx-bin577 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1K20-67-010-mx-bin582 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1K20-67-012-mx-bin583 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Asaia bogorensis

characteristic: organism

text: Asaia bogorensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1K20-67-11-m2-bin49 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1K20-67-15-m2-bin50 - Bacteria; Bacteroidetes; Bacteroidia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bacteroides fragilis

characteristic: organism

text: Bacteroides fragilis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1K20-67-17-m2-bin51 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Asaia bogorensis

characteristic: project name

characteristic: sample derived from

text: Asaia bogorensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1K20-67-1-mx-bin578 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1K20-67-2-mx-bin579 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingomonas paucimobilis

characteristic: project name

characteristic: sample derived from

text: Sphingomonas paucimobilis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1K20-67-3-mx-bin580 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas umsongensis

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Pseudomonas umsongensis

characteristic: organism

text: Pseudomonas umsongensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1K20-67-4-mx-bin581 - Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Phycisphaera mikurensis NBRC 102666

characteristic: project name

characteristic: sample derived from

text: Phycisphaera mikurensis NBRC 102666

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K1K20-67-5-m2-bin52 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Phenylobacterium deserti

characteristic: organism

text: Phenylobacterium deserti

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K1K20-67-8-m2-bin53 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Devosia equisanguinis

characteristic: project name

characteristic: sample derived from

text: Devosia equisanguinis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K9-75-1-m2-bin54 - Bacteria; Bacteroidetes; Bacteroidia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bacteroides fragilis

characteristic: organism

text: Bacteroides fragilis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K9-75-2-m2-bin55 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K9-75-3-m2-bin56 - Bacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: bacterium Ga0077546

characteristic: organism

text: bacterium Ga0077546

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K9-75-5-m2-bin57 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bradyrhizobium ivorense

characteristic: project name

characteristic: sample derived from

text: Bradyrhizobium ivorense

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K9-75-5-mx-bin584 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Pseudomonas synxantha

characteristic: organism

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-K9-75-6-m1-bin268 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Maricaulis salignorans

characteristic: project name

characteristic: sample derived from

text: Maricaulis salignorans

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-K9-75-7-m2-bin58 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Caulobacter sp. UNC279MFTsu5.1

characteristic: organism

text: Caulobacter sp. UNC279MFTsu5.1

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KAD2B2-407-1-mx-bin585 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas alcaligenes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pseudomonas alcaligenes

characteristic: project name

characteristic: sample derived from

text: Pseudomonas alcaligenes

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KAD2B2-407-2-mx-bin586 - Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KAD2B2-407-5-m1-bin269 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bradyrhizobium ivorense

characteristic: project name

characteristic: sample derived from

text: Bradyrhizobium ivorense

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KAD2B2-407-5-mx-bin587 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KAD2B2-407-7-m2-bin59 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KAD2B2-407-8-m1-bin270 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Limnohabitans

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Limnohabitans sp. Rim8

characteristic: organism

text: Limnohabitans sp. Rim8

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KC21115-111-1-m1-bin271 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KC21115-111-1-mx-bin588 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Vulcanococcus; Vulcanococcus limneticus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Vulcanococcus limneticus LL

characteristic: organism

text: Vulcanococcus limneticus LL

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KC21115-111-2-m1-bin272 - Bacteria; Bacteroidetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KC21115-111-3-mx-bin589 - Bacteria; Proteobacteria; Betaproteobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bordetella parapertussis

characteristic: organism

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KC21115-111-6-m2-bin60 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KC21117-112-1-m2-bin61 - Bacteria; Bacteroidetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KC21117-112-1-mx-bin590 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KC21117-112-2-m1-bin273 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hydrogenophaga intermedia

characteristic: organism

text: Hydrogenophaga intermedia

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL17-317-1-m1-bin274 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax; Variovorax paradoxus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Variovorax paradoxus

characteristic: project name

characteristic: sample derived from

text: Variovorax paradoxus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL17-317-1-m2-bin62 - Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Marivirga sericea

characteristic: organism

text: Marivirga sericea

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL17-317-1-mx-bin591 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Methylibium sp. Pch-M

characteristic: project name

characteristic: sample derived from

text: Methylibium sp. Pch-M

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL17-317-2-m1-bin275 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bosea thiooxidans

characteristic: organism

text: Bosea thiooxidans

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL17-317-2-m2-bin63 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Hydrogenophaga intermedia

characteristic: project name

characteristic: sample derived from

text: Hydrogenophaga intermedia

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL17-317-3-m1-bin276 - Bacteria; Proteobacteria; Alphaproteobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Rhizobium sp. Q54

characteristic: organism

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL17-317-5-m1-bin277 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

characteristic: sample derived from

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL17-317-6-m1-bin278 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL17-317-9-m2-bin879 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL2088-143-1-mx-bin592 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Vulcanococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Vulcanococcus limneticus LL

characteristic: organism

text: Vulcanococcus limneticus LL

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL21111-146-1-m1-bin279 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bradyrhizobium ivorense

characteristic: project name

characteristic: sample derived from

text: Bradyrhizobium ivorense

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL21111-146-2-mx-bin593 - Bacteria; Armatimonadetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Capsulimonas corticalis

characteristic: organism

text: Capsulimonas corticalis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL21111-146-3-m1-bin280 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Vulcanococcus; Vulcanococcus limneticus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Vulcanococcus limneticus LL

characteristic: project name

characteristic: sample derived from

text: Vulcanococcus limneticus LL

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL21111-146-3-mx-bin594 - Bacteria; Bacteroidetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL21111-146-4-m1-bin281 - Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Gulosibacter sp. Marseille-P7157

characteristic: project name

characteristic: sample derived from

text: Gulosibacter sp. Marseille-P7157

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KL21111-146-5-m1-bin282 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Brevundimonas vancanneytii

characteristic: organism

text: Brevundimonas vancanneytii

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KL21111-146-5-m2-bin64 - Bacteria; Actinobacteria; Actinobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bifidobacterium breve

characteristic: project name

characteristic: sample derived from

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KO21-114-1-m1-bin283 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Rhodobacter maris

characteristic: organism

text: Rhodobacter maris

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KO21-114-2-m2-bin65 - Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Phycisphaera mikurensis NBRC 102666

characteristic: project name

characteristic: sample derived from

text: Phycisphaera mikurensis NBRC 102666

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KO21-114-3-m1-bin284 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KO21-114-4-m1-bin285 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Vulcanococcus; Vulcanococcus limneticus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Vulcanococcus limneticus LL

characteristic: project name

characteristic: sample derived from

text: Vulcanococcus limneticus LL

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-KV10D3-173-1-m2-bin66 - Bacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: bacterium Ga0077546

characteristic: organism

text: bacterium Ga0077546

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-KV10D3-173-4-m2-bin880 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach