characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-13721_2:SQ_2854_PIC-X_Unexp_T2_CD22_BCR

text: ArrayExpress

text: CD22+ B-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

text: adult

text: Healthy donor

characteristic: disease

text: not collected

text: PIC-X

characteristic: individual

text: not applicable

text: BCR Sequencing

characteristic: library type

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex


status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

text: Fondazione Istituto Nazionale di Genetica Molecolare (INGM)

text: public

characteristic: SRA accession

text: E-MTAB-13721_2:SQ_2855_PIC-0028_Unexp_T2_CD22_BCR

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD22+ B-lymphocyte

text: SARS-CoV-2 Unexperienced

characteristic: clinical history

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: Peripheral Blood Mononuclear Cells (PBMCs) were isolated by density-gradient centrifugation using Ficoll-Plaque protocol and cryopreserved for subsequent cell sorting and scRNA-Seq analyses.  Single cell suspension was used according to Chromium Next GEM Single cell V(D)J Reagent kits v1.1 Chromium Next GEM Single Cell 5’ Library & Gel Bead Kit v1.1, 16 rxns PN-1000165 Chromium Next GEM Chip G Single Cell Kit, 48 rxns PN-1000120 Single Index Kit T Set A, 96 rxns PN-1000213 Chromium Next GEM Single Cell 5’ Library & Gel Bead Kit v1.1, 16 rxns PN-1000165 Chromium Single Cell 5' Library Construction Kit, 16 rxns PN-1000020 Chromium Single Cell V(D)J Enrichment Kit, Human T Cell, 96 rxns PN-1000005 Chromium Next GEM Chip G Single Cell Kit, 48 rxns PN-1000120 Single Index Kit T Set A, 96 rxns PN-1000213  Chromium Next GEM Single Cell 5’ Library & Gel Bead Kit v1.1, 16 rxns PN-1000165 Chromium Single Cell 5' Library Construction Kit, 16 rxns PN-1000020 Chromium Single Cell V(D)J Enrichment Kit, Human B Cell, 96 rxns PN-1000016 Chromium Next GEM Chip G Single Cell Kit, 48 rxns PN-1000120 Single Index Kit T Set A, 96 rxns PN-1000213 Chromium Next GEM Single Cell 5’ Library & Gel Bead Kit v1.1, 16 rxns PN-1000165 Chromium Single Cell 5' Library Construction Kit, 16 rxns PN-1000020 Chromium Next GEM Chip G Single Cell Kit, 48 rxns PN-1000120 Chromium Single Cell 5' Feature Barcode Library Kit, 16 rxns PN-1000080 Single Index Kit N Set A, 96 rxns PN-1000212

characteristic: description

text: adult

characteristic: developmental stage

text: Healthy donor

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: BCR Sequencing

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: title


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-13721_2:SQ_2856_PIC-X_Unexp_T1_CD4_FC

text: ArrayExpress

text: CD4+ T-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

text: adult

text: Healthy donor

characteristic: disease

text: not collected

text: PIC-X

characteristic: individual

text: not applicable

text: Cell surface

characteristic: library type

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-13721_2:SQ_2857_PIC-X_Unexp_T1_CD8_FC

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8+ T-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

text: adult

text: Healthy donor

text: not collected

text: PIC-X

text: not applicable

text: Cell surface

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


text: public

text: E-MTAB-13721_2:SQ_2858_PIC-X_Unexp_T1_CD22_FC

text: ArrayExpress

text: CD22+ B-lymphocyte

text: SARS-CoV-2 Unexperienced

characteristic: clinical history

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Healthy donor

text: not collected

characteristic: geographic location (country and/or sea)

text: PIC-X

text: not applicable

text: Cell surface

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-13721_2:SQ_2859_PIC-X_Unexp_T2_CD4_FC

text: ArrayExpress

text: CD4+ T-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

text: adult

text: Healthy donor

text: not collected

text: PIC-X

text: not applicable

characteristic: isolate

text: Cell surface

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13721_2:SQ_2860_PIC-X_Unexp_T2_CD8_FC

text: ArrayExpress

text: CD8+ T-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

text: adult

text: Healthy donor

characteristic: disease

text: not collected

text: PIC-X

characteristic: individual

text: not applicable

text: Cell surface

characteristic: library type

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex


text: public

characteristic: SRA accession

text: E-MTAB-13721_2:SQ_2861_PIC-X_Unexp_T2_CD22_FC

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD22+ B-lymphocyte

text: SARS-CoV-2 Unexperienced

characteristic: clinical history

text: not collected

characteristic: collection date

text: human

text: adult

text: Healthy donor

text: not collected

text: PIC-X

text: not applicable

text: Cell surface

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-13721_2:SQ_2862_PIC-0028_Unexp_T2_CD4_FC

text: ArrayExpress

text: CD4+ T-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Healthy donor

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Cell surface

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-13721_2:SQ_2863_PIC-0028_Unexp_T2_CD8_FC

text: ArrayExpress

text: CD8+ T-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

text: adult

text: Healthy donor

text: not collected

text: not applicable

characteristic: isolate

text: Cell surface

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: title


text: public

characteristic: SRA accession

text: E-MTAB-13721_2:SQ_2864_PIC-0028_Unexp_T2_CD22_FC

characteristic: Submitter Id

text: ArrayExpress

text: CD22+ B-lymphocyte

text: SARS-CoV-2 Unexperienced

text: not collected

text: human

text: adult

text: Healthy donor

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: FC Sequencing

characteristic: library type

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex


text: FIOCRUZ-MG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: human

text: Acute patient 1- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 01/23


text: FIOCRUZ-MG

text: public

text: human

characteristic: common name

text: Acute patient 2- Whole-blood

characteristic: description

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 02/23


characteristic: ENA first public

text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 3- Whole-blood

text: Brazil

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 03/23


characteristic: ENA-CHECKLIST

text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 4- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 04/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 5- Whole-blood

text: Brazil

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: FSA_Ag 05/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 7- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 07/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 8- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 08/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 9- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 09/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 10- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 10/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 11- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 11/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 12- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 12/23


text: FIOCRUZ-MG

text: public

text: human

text: Acute patient 13- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Ag 13/23


text: FIOCRUZ-MG

text: public

text: human

text: Control patient 1- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cont 01/23


text: FIOCRUZ-MG

text: public

text: human

text: Control patient 2- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cont 02/23


text: FIOCRUZ-MG

text: public

text: human

text: Control patient 4- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cont 04/23


text: FIOCRUZ-MG

text: public

text: human

text: Control patient 5- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cont 05/23


text: FIOCRUZ-MG

text: public

text: human

text: Control patient 6- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cont 06/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 1- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 01/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 2- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 02/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 3- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 03/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 4 - family member 1- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 04/23 P1


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 4 - family member 2- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 04/23 P2


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 4 - family member 3- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 04/23 P3


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 5- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 05/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 6- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 06/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 7- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 07/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 8- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 08/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 9- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 09/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 10- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 10/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 11- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 11/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 12- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 12/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 13- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 13/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 14- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 14/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 15- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 15/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 16- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 16/23


text: FIOCRUZ-MG

text: public

text: human

text: Chronic patient 17- Whole-blood

text: Brazil

text: Homo sapiens

text: Homo sapiens

text: FSA_Cr 17/23


text: PHAS

text: public

text: PHAS

characteristic: broker name

text: Clinical isolate

text: Sweden

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: PHAS

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: PHAS

text: not collected

text: isolate

text: Belgium

text: diseased

text: Homo sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title


text: PHAS

text: public

text: PHAS

text: not collected

text: isolate

text: Italy

text: diseased

text: Homo sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


ENA sample - s_37719-e_858

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

text: public

text: ENA sample - s_37719-e_858

text: Science Park of Comenius University of Bratislava

characteristic: collecting institution

text: unknown

characteristic: collector name

characteristic: ena-checklist

text: Slovakia

unit: years

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: unknown

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Betainfluenzavirus influenzae

text: N,N,N,N

characteristic: other pathogens test result

text: RSV A,RSV B,SARS-CoV-2,Monkeypox

characteristic: other pathogens tested

text: Betainfluenzavirus influenzae

text: s_37719-e_858-Betainfluenzavirus influenzae


ENA sample - s_37713-e_862

characteristic: ENA first public

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ENA sample - s_37713-e_862

characteristic: broker name

characteristic: collection date

text: unknown

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: unknown

text: RT-PCR

text: P

text: Alphainfluenzavirus influenzae

characteristic: organism

text: N,N,N,N

text: RSV A,RSV B,SARS-CoV-2,Monkeypox

text: Alphainfluenzavirus influenzae

text: s_37713-e_862-Alphainfluenzavirus influenzae


ENA sample - s_37717-e_863

text: public

characteristic: SRA accession

text: ENA sample - s_37717-e_863

characteristic: Submitter Id

characteristic: collecting institution

text: unknown

characteristic: collector name

characteristic: ena-checklist

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: unknown

text: RNA

characteristic: isolate

text: Orthopneumovirus hominis

text: Orthopneumovirus hominis

text: s_37717-e_863-Orthopneumovirus hominis

characteristic: title


ENA sample - s_37718-e_866

text: public

text: ENA sample - s_37718-e_866

text: unknown

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

text: unknown

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Betainfluenzavirus influenzae

text: N,N,N,N

characteristic: other pathogens test result

text: RSV A,RSV B,SARS-CoV-2,Monkeypox

characteristic: other pathogens tested

text: Betainfluenzavirus influenzae

text: s_37718-e_866-Betainfluenzavirus influenzae


ENA sample - s_37716-e_867

characteristic: ENA first public

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ENA sample - s_37716-e_867

characteristic: broker name

characteristic: collection date

text: unknown

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: unknown

text: RNA

text: Orthopneumovirus hominis

characteristic: organism

text: Orthopneumovirus hominis

text: s_37716-e_867-Orthopneumovirus hominis


ENA sample - s_37712-e_870

text: public

characteristic: SRA accession

text: ENA sample - s_37712-e_870

characteristic: Submitter Id

characteristic: collecting institution

text: unknown

characteristic: collector name

characteristic: ena-checklist

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: unknown

text: RNA

characteristic: isolate

text: Orthopneumovirus hominis

text: Orthopneumovirus hominis

text: s_37712-e_870-Orthopneumovirus hominis

characteristic: title


ENA sample - s_37714-e_872

text: public

text: ENA sample - s_37714-e_872

text: unknown

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

text: unknown

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Alphainfluenzavirus influenzae

text: N,N,N,N

characteristic: other pathogens test result

text: RSV A,RSV B,SARS-CoV-2,Monkeypox

characteristic: other pathogens tested

text: Alphainfluenzavirus influenzae

text: s_37714-e_872-Alphainfluenzavirus influenzae


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: St James's Hopsital

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: homo sapiens

text: clinical isolate

text: Mycolicibacterium vulneris

characteristic: organism

text: Mycolicibacterium vulneris

characteristic: serovar

characteristic: strain


text: NIPH

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: S. pyogenes

characteristic: common name

text: GAS routine sample

characteristic: description

text: Norway

text: not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Pleural fluid

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: NIPH

text: public

text: ELIXIR-Norway

text: N. meningitidis

text: Norway

text: not provided

text: Homo sapiens

text: Blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Heidelberg

characteristic: serovar


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Anatum


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Northern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Cerro


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Braenderup


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Stendal


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Concord


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Heidelberg


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Anatum


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Chandans


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Dublin


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Virchow


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Reading


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium Monophasic


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Umbilo


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC last update

text: public

tag: Namespace:Biology Centre CAS

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-10NR-37-1-m1-bin212 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Acidovorax caeni

characteristic: project name

characteristic: sample derived from

text: Acidovorax caeni

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-10NR-37-1-mx-bin484 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Vulcanococcus; Vulcanococcus limneticus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Vulcanococcus limneticus LL

characteristic: organism

text: Vulcanococcus limneticus LL

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-10NR-37-3-m2-bin1 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tabrizicola

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Tabrizicola sp. YIM 78059

characteristic: project name

characteristic: sample derived from

text: Tabrizicola sp. YIM 78059

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-8809-52-14-m2-bin2 - Bacteria; Bacteroidetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-8809-52-1-mx-bin485 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-8809-52-5-m1-bin213 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingomonadaceae bacterium Delta

characteristic: organism

text: Sphingomonadaceae bacterium Delta

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-8809-52-5-m2-bin3 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sandarakinorhabdus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sandarakinorhabdus cyanobacteriorum

characteristic: project name

characteristic: sample derived from

text: Sandarakinorhabdus cyanobacteriorum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-8809-52-5-mx-bin486 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Shinella sumterensis

characteristic: organism

text: Shinella sumterensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-8809-52-6-mx-bin487 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-8809-52-7-mx-bin488 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Limnobacter alexandrii

characteristic: organism

text: Limnobacter alexandrii

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-8809-52-9-m2-bin4 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pseudomonas synxantha

characteristic: project name

characteristic: sample derived from

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ACAR75-448-1-mx-bin489 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Rhizobium sp. Q54

characteristic: organism

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ACAR75-448-2-m1-bin214 - Bacteria; Actinobacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pimelobacter simplex

characteristic: project name

characteristic: sample derived from

text: Pimelobacter simplex

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ACAR75-448-5-m2-bin5 - Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Microbacterium timonense

characteristic: organism

text: Microbacterium timonense

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ACAR75-448-6-m2-bin6 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Mesorhizobium carmichaelinearum

characteristic: project name

characteristic: sample derived from

text: Mesorhizobium carmichaelinearum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ATTM11-21-1-mx-bin490 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Austria

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ATTM11-21-3-m2-bin7 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bosea thiooxidans

characteristic: project name

characteristic: sample derived from

text: Bosea thiooxidans

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-AX1-329-1-mx-bin491 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-AX1-329-2-mx-bin492 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pseudomonas synxantha

characteristic: project name

characteristic: sample derived from

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-AX1-329-3-mx-bin493 - Bacteria; Proteobacteria; Gammaproteobacteria; Nevskiales; Sinobacteraceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hydrocarboniphaga daqingensis

characteristic: organism

text: Hydrocarboniphaga daqingensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-BKS3-85-1-mx-bin494 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-BKS3-85-2-m1-bin215 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Ramlibacter sp. 2FC

characteristic: organism

text: Ramlibacter sp. 2FC

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-BKS3-85-2-mx-bin495 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-BKS3-85-5-m1-bin216 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Comamonas sp. lk

characteristic: organism

text: Comamonas sp. lk

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-BKS3-85-5-mx-bin496 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingomonas paucimobilis

characteristic: project name

characteristic: sample derived from

text: Sphingomonas paucimobilis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-BKS3-85-6-m1-bin217 - Bacteria; Actinobacteria; Actinobacteria

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bifidobacterium breve

characteristic: organism

text: Bifidobacterium breve

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-BR168-52-1-mx-bin497 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-BR168-52-2-m2-bin8 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hydrogenophaga intermedia

characteristic: organism

text: Hydrogenophaga intermedia

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-BR168-52-2-mx-bin498 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Acidovorax caeni

characteristic: project name

characteristic: sample derived from

text: Acidovorax caeni

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CERC1-25-1-m1-bin218 - Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Archangiaceae; Archangium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Archangium gephyra

characteristic: organism

text: Archangium gephyra

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CERC1-25-1-mx-bin499 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CERC1-25-4-m1-bin219 - Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CERC1-25-6-m2-bin9 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CU23-05-011-mx-bin506 - Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; Flavobacterium succinicans

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Flavobacterium succinicans

characteristic: organism

text: Flavobacterium succinicans

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CU23-05-10-m2-bin10 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Porphyrobacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Erythrobacter sanguineus

characteristic: project name

characteristic: sample derived from

text: Erythrobacter sanguineus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CU23-05-13-m1-bin220 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Curvibacter sp. AEP1-3

characteristic: organism

text: Curvibacter sp. AEP1-3

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CU23-05-13-m2-bin11 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Brevundimonas vancanneytii

characteristic: project name

characteristic: sample derived from

text: Brevundimonas vancanneytii

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CU23-05-1-mx-bin500 - Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chryseobacterium gleum

characteristic: organism

text: Chryseobacterium gleum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CU23-05-2-m1-bin221 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tabrizicola

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Tabrizicola sp. YIM 78059

characteristic: project name

characteristic: sample derived from

text: Tabrizicola sp. YIM 78059

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CU23-05-2-mx-bin501 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CU23-05-3-m1-bin222 - Bacteria; Proteobacteria; Alphaproteobacteria

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CU23-05-3-mx-bin502 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hydrogenophaga intermedia

characteristic: organism

text: Hydrogenophaga intermedia

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CU23-05-4-mx-bin503 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

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text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

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text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CU23-05-5-mx-bin504 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bordetella parapertussis

characteristic: organism

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CU23-05-7-m1-bin223 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Agrobacterium sp. 719_389

characteristic: project name

characteristic: sample derived from

text: Agrobacterium sp. 719_389

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-CU23-05-7-m2-bin12 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bosea thiooxidans

characteristic: organism

text: Bosea thiooxidans

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-CU23-05-7-mx-bin505 - Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Methylophilus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Methylophilus rhizosphaerae

characteristic: project name

characteristic: sample derived from

text: Methylophilus rhizosphaerae

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-D1D10-2-1-mx-bin507 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Germany

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

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text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-D1D10-2-2-m1-bin224 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Reyranella

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Reyranella massiliensis 521

characteristic: project name

characteristic: sample derived from

text: Reyranella massiliensis 521

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

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characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-D1D11-3-1-mx-bin508 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Germany

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Cyanobium sp. NIES-981

characteristic: organism

text: Cyanobium sp. NIES-981

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

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text: checkm

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characteristic: contamination score

text: JJ-D1D11-3-2-mx-bin509 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bradyrhizobium ivorense

characteristic: project name

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text: Bradyrhizobium ivorense

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

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text: Biology Centre CAS

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text: public

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text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-DHS118-246-1-m1-bin225 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Pseudomonas synxantha

characteristic: organism

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-DHS118-246-2-mx-bin510 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bordetella parapertussis

characteristic: project name

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text: Bordetella parapertussis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

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text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-DHS118-246-3-m1-bin226 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-DHS118-246-3-m2-bin13 - Bacteria; Bacteroidetes

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

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text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-DHS118-246-5-mx-bin511 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-DHS13-24-1-m1-bin227 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax; Variovorax paradoxus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Variovorax paradoxus

characteristic: project name

characteristic: sample derived from

text: Variovorax paradoxus

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-DHS13-24-1-mx-bin512 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-DHS13-24-2-mx-bin513 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Limnobacter alexandrii

characteristic: project name

characteristic: sample derived from

text: Limnobacter alexandrii

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title