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text: MEGAHIT

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characteristic: binning parameters

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characteristic: contamination score

text: JJ-LUK12B-28-7-m2-bin89 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Reyranella

text: freshwater lake

characteristic: environment (biome)

text: lake

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text: fresh water

characteristic: environment (material)

text: Switzerland

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characteristic: geographic location (longitude)

text: metagenome-assembled genome

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text: Freshwater lake

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text: Reyranella massiliensis 521

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text: Biology Centre CAS

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tag: Namespace:Biology Centre CAS

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text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

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text: checkm

text: JJ-LUK12B-28-9-m1-bin318 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas

characteristic: description

text: freshwater lake

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characteristic: geographic location (country and/or sea)

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text: metagenome-assembled genome

text: Freshwater lake

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text: Polaromonas sp. YR568

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characteristic: binning parameters

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text: JJ-M10A2-106-11-m2-bin90 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium

text: freshwater lake

characteristic: environment (biome)

text: lake

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text: fresh water

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text: Czech Republic

characteristic: geographic location (latitude)

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text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

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characteristic: metagenomic source

text: Cyanobium sp. NIES-981

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text: Cyanobium sp. NIES-981

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text: multi-marker approach


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text: Biology Centre CAS

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text: Rhizobium sp. Q54

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text: Biology Centre CAS

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text: JJ-M10A2-106-2-mx-bin638 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium

text: freshwater lake

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text: Freshwater lake

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text: Mesorhizobium carmichaelinearum

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text: MEGAHIT

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text: JJ-M10A2-106-6-m1-bin320 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales

characteristic: description

text: freshwater lake

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characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

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text: Sphingomonas paucimobilis

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text: Biology Centre CAS

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text: freshwater lake

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text: lake

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text: fresh water

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text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

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text: Klebsiella pneumoniae

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text: Biology Centre CAS

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text: JJ-M10A2-106-9-m2-bin92 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas

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text: Freshwater lake

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text: Brevundimonas vancanneytii

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text: JJ-M10A2-106-9-mx-bin639 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas

text: freshwater lake

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text: lake

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text: fresh water

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text: Czech Republic

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text: metagenome-assembled genome

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text: Freshwater lake

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text: JJ-M10D5-90-1-m2-bin93 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium

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text: freshwater lake

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text: Mesorhizobium carmichaelinearum

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text: JJ-M10D5-90-2-m2-bin94 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

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text: metagenome-assembled genome

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text: Freshwater lake

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text: freshwater lake

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text: lake

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text: JJ-M1A6-103-1-mx-bin641 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

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text: fresh water

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text: metagenome-assembled genome

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text: JJ-M1A6-103-4-m1-bin323 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

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text: fresh water

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text: metagenome-assembled genome

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text: Freshwater lake

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text: Maricaulis salignorans

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text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

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text: JJ-M3B2-104-1-m2-bin95 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas

text: freshwater lake

characteristic: environment (biome)

text: lake

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text: fresh water

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text: Czech Republic

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text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

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text: JJ-M3B2-36-1-mx-bin644 - Bacteria; Cyanobacteria; Chroococcales; Aphanothecaceae; Aphanothece; Aphanothece minutissima

text: freshwater lake

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text: Freshwater lake

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text: JJ-M3B2-36-2-mx-bin645 - Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium

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text: freshwater lake

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text: metagenome-assembled genome

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text: Mycobacterium ulcerans

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text: JJ-M3B2-36-3-mx-bin646 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

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text: metagenome-assembled genome

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text: Freshwater lake

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characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

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text: JJ-M6D1-105-2-m1-bin325 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium

text: freshwater lake

characteristic: environment (biome)

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text: fresh water

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text: metagenome-assembled genome

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text: Freshwater lake

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text: MEGAHIT

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text: coverage and kmer

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text: JJ-M6D1-105-2-m2-bin97 - Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter

characteristic: description

text: freshwater lake

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characteristic: geographic location (country and/or sea)

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text: Arthrobacter sp. P2b

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text: JJ-M6D1-105-4-m1-bin326 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

text: freshwater lake

characteristic: environment (biome)

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text: metagenome-assembled genome

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text: Freshwater lake

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characteristic: collection date

text: checkm

text: JJ-M6D1-105-4-mx-bin647 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Cyanobium sp. NIES-981

characteristic: organism

text: Cyanobium sp. NIES-981

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-M6D1-105-6-mx-bin648 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Janthinobacterium lividum

characteristic: project name

characteristic: sample derived from

text: Janthinobacterium lividum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MA1B5-281-10-m2-bin98 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Azorhizobium sp. AG788

characteristic: organism

text: Azorhizobium sp. AG788

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MA1B5-281-2-m2-bin99 - Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Opitutus sp. GAS368

characteristic: project name

characteristic: sample derived from

text: Opitutus sp. GAS368

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MA1B5-281-2-mx-bin649 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Polynucleobacter meluiroseus

characteristic: organism

text: Polynucleobacter meluiroseus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MA1B5-281-3-mx-bin650 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pseudomonas synxantha

characteristic: project name

characteristic: sample derived from

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MA1B5-281-4-m1-bin327 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Ferrovibrio

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Ferrovibrio terrae

characteristic: organism

text: Ferrovibrio terrae

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MA1B5-281-4-mx-bin651 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Hydrogenophaga intermedia

characteristic: project name

characteristic: sample derived from

text: Hydrogenophaga intermedia

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MA1B5-281-6-m1-bin328 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MA1B5-281-7-m1-bin329 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Sphingomonas paucimobilis

characteristic: project name

characteristic: sample derived from

text: Sphingomonas paucimobilis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MA1B5-281-8-m1-bin330 - Bacteria; Bacteroidetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAA6-279-1-mx-bin652 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAA6-279-3-m2-bin100 - Bacteria; Bacteroidetes; Sphingobacteriia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAA6-279-5-m2-bin101 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Ramlibacter sp. 2FC

characteristic: project name

characteristic: sample derived from

text: Ramlibacter sp. 2FC

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAA6-279-6-m2-bin102 - Bacteria; Bacteroidetes

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAC1KOLA6-346-1-mx-bin653 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAC1KOLA6-346-2-m1-bin331 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Ferrovibrio

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Ferrovibrio terrae

characteristic: organism

text: Ferrovibrio terrae

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAC1KOLA6-346-2-mx-bin654 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAC1KOLA6-346-3-mx-bin655 - Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAC1KOLA6-346-4-mx-bin656 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pseudomonas synxantha

characteristic: project name

characteristic: sample derived from

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAC1KOLB2-402-1-mx-bin657 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAC1KOLB2-402-2-mx-bin658 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Pseudomonas synxantha

characteristic: project name

characteristic: sample derived from

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAC1KOLB2-402-3-m1-bin332 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bordetella parapertussis

characteristic: organism

text: Bordetella parapertussis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAC1KOLB2-402-3-mx-bin659 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAC3-364-1-m1-bin333 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Asaia bogorensis

characteristic: organism

text: Asaia bogorensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MAC3-364-2-mx-bin660 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhizobium sp. Q54

characteristic: project name

characteristic: sample derived from

text: Rhizobium sp. Q54

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MAC3-364-4-m2-bin103 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sandarakinorhabdus; Sandarakinorhabdus limnophila

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sandarakinorhabdus limnophila DSM 17366

characteristic: organism

text: Sandarakinorhabdus limnophila DSM 17366

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ME644-99-1-m1-bin334 - Bacteria; Actinobacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Nocardioides psychrotolerans

characteristic: project name

characteristic: sample derived from

text: Nocardioides psychrotolerans

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ME644-99-1-mx-bin661 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ME644-99-2-m1-bin335 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Polaromonas sp. YR568

characteristic: project name

characteristic: sample derived from

text: Polaromonas sp. YR568

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ME644-99-3-m2-bin104 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hyphomicrobium sp. CS1GBMeth3

characteristic: organism

text: Hyphomicrobium sp. CS1GBMeth3

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ME644-99-3-mx-bin662 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Curvibacter sp. AEP1-3

characteristic: project name

characteristic: sample derived from

text: Curvibacter sp. AEP1-3

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ME9A6-316-11-m2-bin105 - Bacteria; Proteobacteria; Gammaproteobacteria; Nevskiales; Sinobacteraceae; Hydrocarboniphaga; Hydrocarboniphaga effusa

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Hydrocarboniphaga effusa AP103

characteristic: organism

text: Hydrocarboniphaga effusa AP103

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ME9A6-316-2-mx-bin663 - Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Crocinitomicaceae; Fluviicola

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Fluviicola taffensis DSM 16823

characteristic: project name

characteristic: sample derived from

text: Fluviicola taffensis DSM 16823

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ME9A6-316-3-mx-bin664 - Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Emticicia agri

characteristic: organism

text: Emticicia agri

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ME9A6-316-4-mx-bin665 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Azorhizobium sp. AG788

characteristic: project name

characteristic: sample derived from

text: Azorhizobium sp. AG788

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ME9A6-316-5-m2-bin106 - Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobiaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Prosthecobacter debontii

characteristic: organism

text: Prosthecobacter debontii

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ME9A6-316-8-m1-bin336 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-ME9A6-316-8-m2-bin107 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; Azospirillum thiophilum

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Azospirillum thiophilum

characteristic: organism

text: Azospirillum thiophilum

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-ME9A6-316-9-m2-bin108 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bradyrhizobium ivorense

characteristic: project name

characteristic: sample derived from

text: Bradyrhizobium ivorense

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM4D-83-2-mx-bin666 - Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM4D-83-3-mx-bin667 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM4D-83-4-m2-bin109 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Comamonas sp. lk

characteristic: organism

text: Comamonas sp. lk

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM4D-83-5-m1-bin337 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM4D-83-5-m2-bin110 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Pseudomonas synxantha

characteristic: organism

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM4D-83-6-mx-bin668 - Bacteria; Actinobacteria; Actinobacteria; Micrococcales

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Auritidibacter sp. Marseille-P8566

characteristic: project name

characteristic: sample derived from

text: Auritidibacter sp. Marseille-P8566

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM4D-83-7-m2-bin111 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Variovorax sp. YR752

characteristic: organism

text: Variovorax sp. YR752

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM4D-83-8-m1-bin338 - Bacteria; Actinobacteria; Actinobacteria; Candidatus Nanopelagicales; Candidatus Nanopelagicaceae; Candidatus Planktophila

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Planktophila lacus

characteristic: project name

characteristic: sample derived from

text: Candidatus Planktophila lacus

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM5D2-223-10-m1-bin340 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sandarakinorhabdus; Sandarakinorhabdus limnophila

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sandarakinorhabdus limnophila DSM 17366

characteristic: organism

text: Sandarakinorhabdus limnophila DSM 17366

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM5D2-223-10-m2-bin112 - Bacteria; Elusimicrobia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Endomicrobium trichonymphae

characteristic: project name

characteristic: sample derived from

text: Candidatus Endomicrobium trichonymphae

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM5D2-223-1-m1-bin339 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Pseudomonas synxantha

characteristic: organism

text: Pseudomonas synxantha

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM5D2-223-1-mx-bin669 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM5D2-223-2-m1-bin341 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Ramlibacter sp. 2FC

characteristic: organism

text: Ramlibacter sp. 2FC

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM5D2-223-3-m1-bin342 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Comamonas sp. lk

characteristic: project name

characteristic: sample derived from

text: Comamonas sp. lk

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM5D2-223-4-m1-bin343 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Polaromonas sp. YR568

characteristic: organism

text: Polaromonas sp. YR568

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM5D2-223-5-m1-bin344 - Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Caulobacter sp. UNC279MFTsu5.1

characteristic: project name

characteristic: sample derived from

text: Caulobacter sp. UNC279MFTsu5.1

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM5D2-223-6-m1-bin345 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MEM5D2-223-7-m1-bin346 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Devosia equisanguinis

characteristic: project name

characteristic: sample derived from

text: Devosia equisanguinis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MEM5D2-223-9-m2-bin113 - Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Sphingobacterium thalpophilum

characteristic: organism

text: Sphingobacterium thalpophilum

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MI52-106-1-mx-bin670 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Synechococcus sp. UW140

characteristic: project name

characteristic: sample derived from

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MIC7-10-10-m2-bin114 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MIC7-10-1-m1-bin347 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Bradyrhizobium ivorense

characteristic: project name

characteristic: sample derived from

text: Bradyrhizobium ivorense

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MIC7-10-2-m1-bin348 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Bosea thiooxidans

characteristic: organism

text: Bosea thiooxidans

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MIC7-10-4-m1-bin349 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Chitinophaga pinensis

characteristic: project name

characteristic: sample derived from

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MIC7-10-5-mx-bin672 - Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Chitinophaga pinensis

characteristic: organism

text: Chitinophaga pinensis

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MIC7-10-6-m1-bin350 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium; Cyanobium usitatum

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Cyanobium usitatum str. Tous

characteristic: project name

characteristic: sample derived from

text: Cyanobium usitatum str. Tous

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MIC7-10-7-m1-bin351 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker


text: Biology Centre CAS

text: public

text: MEGAHIT

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: JJ-MIC7-10-8-m2-bin115 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Rhodoferax sp. OV413

characteristic: project name

characteristic: sample derived from

text: Rhodoferax sp. OV413

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Biology Centre CAS

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

characteristic: assembly software

text: coverage and kmer

characteristic: collection date

text: checkm

text: JJ-MIK16A5-260-1-mx-bin673 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Synechococcus sp. UW140

characteristic: organism

text: Synechococcus sp. UW140

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach