characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: Asian cultivated rice

text: Sabharaj

text: seedling development stage

text: wild type genotype

text: not applicable

text: Oryza sativa

text: Oryza sativa

text: shoot

text: Oryza sativa

text: supplementary far red light


status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: SRA accession

tag: Namespace:Plant-Environment Signaling Group, Dept. of Biology, Faculty of Science, Utrecht University, The Netherlands

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Asian cultivated rice

characteristic: common name

text: Sabharaj

characteristic: cultivar

text: Protocols: At harvesting, tissue was snap frozen in liquid nitrogen and stored at -80 °C. All plants were grown in the greenhouse facilities of the Botanical Gardens, Utrecht University, in The Netherlands, in summer and autumn of 2021 (Supplemental Figure 1 A). Temperatures were set to 30 °C during the day and 25 °C during the night and a 12 h photoperiod from 8 am to 8 pm, with automatic watering keeping the soil saturated. Pots were arranged at 10 cm distance. For control group (WL) the light intensity was min 400 µmol m-2 s-1 of sunlight and artificial light (Valoya, Model Rx400 500mA 5730, Spectrum AP673L) switching on if sunlight flux rate dropped below 400 ɥmol m-2 s-1. For supplemental FR during photoperiod (WL+FR), the treatment group received in addition to the WL background, FR from LEDs (Valoya FR). Light intensity in PPFD range was the same between the control and treatment group. PFD was approx 400 µmol photons m–2 s–1 in control and 900 µmol photons m–2 s–1 (where approximately 500 ɥmol m-2 s-1 FR light was added (Supplemental Figure 1 B, C) in WL+FR. R:FR ratio was approximately 0.2. For end-of-day FR (EoD FR) treatment, control and treated group received the same light during photoperiod. EoD FR group received 10 minutes after the end of photoperiod (set to 8 pm) a 15-minute pulse of FR light (60-80 µmol m-2 s-1 FR light). To prevent transmission of FR to the control group, a black plastic screen was put up between treatment groups. Harvested tissue was ground with a Retsch grinder. From tissue powder, RNA was isolated using the Qiagen RNeasy kit with on-column DNAse treatment and quality was checked with the Bioanalyzer, before sequencing. RNA quality was checked with the Agilent Fragment Analyzer 5300 system using the RNA Kit (15nt) (Cat. DNF-471-1000). And RNA quantity was measured with the Invitrogen™ Qubit ™ Fluorometer using the Qubit RNA HS Assay Kit (Cat. Q32855). 100ng of total RNA was used to prepare TruSeq Stranded mRNA libraries (Cat. 20020594) following the manufacturers protocol. With custom 384 xGen UDI-UMI adapters from IDT. After the library preparation libraries were checked with the Fragment Analyzer system dsDNA 910 Reagent Kit (35-1500bp) (Cat. DNF-910-K1000) and with Qubit dsDNA HS Assay Kit (Cat. Q32854). Sample libraries were pooled equimolar.

characteristic: description

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: shoot

characteristic: organism part

text: Oryza sativa

text: supplementary far red light

characteristic: stimulus

characteristic: title


text: Plant-Environment Signaling Group, Dept. of Biology, Faculty of Science, Utrecht University, The Netherlands

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: Asian cultivated rice

text: Zhenshan

text: seedling development stage

text: wild type genotype

text: not applicable

text: Oryza sativa

text: Oryza sativa

text: shoot

text: Oryza sativa

text: supplementary far red light


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Wetsus

text: public

characteristic: SRA accession

characteristic: collection date

text: aquifer

text: Netherlands

characteristic: geographic location (country and/or sea)

text: aquifer metagenome

text: aquifer metagenome


text: Wetsus

text: public

text: groundwater

characteristic: description

text: Netherlands

text: groundwater metagenome

text: groundwater metagenome


text: Wetsus

text: public

text: blank

text: Netherlands

text: blank sample

text: blank sample

text: blank


text: Wetsus

text: public

text: blank

text: Netherlands

text: Bacillus phage vB_BthS-TP21T

text: Bacillus phage vB_BthS-TP21T

text: blank


text: Wetsus

text: public

text: blank

text: Netherlands

text: Avipoxvirus Japanese cormorant/Iwakuni/2017

text: blank


text: Wetsus

text: public

text: MOCK

text: Netherlands

text: synthetic metagenome

text: synthetic metagenome


E-MTAB-13193:SNA-2_PE1038_anti_GFP _1

text: UNIVERSITYOFABERDEEN

text: public

text: E-MTAB-13193:SNA-2_PE1038_anti_GFP _1

text: ArrayExpress

characteristic: broker name

text: not collected

text: Protocols: Embryonic extracts from C. elegans strains PE912, PE918, PE975 and PE1038 expressing GFP-tagged SUT-1, SNR-2, SNA-3 or SNA-2 proteins were prepared essentially as described (Fasimoye et al, 2022; https://doi.org/10.1093/nar/gkac534), with minor modifications. Synchronised populations were grown in liquid culture in S-complete medium supplemented with OP50. Approximately 1.5x10E6 embryos were transferred into a 2 L flask containing 500 ml S-complete medium (50 mM potassium phosphate buffer (pH 6), 100 mM NaCl, 10 mM potassium citrate (pH 6), 3 mM CaCl2, 3 mM MgSO4 and 1x standard trace metal solution) and grown overnight at 20°C in a shaking incubator at 200 rpm to L1 stage. After hatching of the embryos, 14-16 g frozen OP50 bacteria were added and the incubation was continued until synchronous gravid adult worms emerged. Adults were recovered by centrifugation at 400x g for 2 min, washed using MilliQ water, floated on 1 M sucrose and then washed again using MilliQ water to remove debris. Animals were then lysed by alkaline hypochlorite treatment and embryos recovered by floating on sucrose. The embryos were washed three times with MilliQ water, twice in 10mM Tris-HCl (pH 8.0), 1.5 mM MgCl2, 10 mM KCl, 50 mM sucrose, 0.05% NP-40, and once in homogenisation buffer (10mM Tris-HCl (pH 8.0), 1.5 mM MgCl2, 10 mM KCl, 1 mM DTT, 50 mM sucrose, 0.05% NP-40, 1X cOmplete EDTA-free protease inhibitor (Roche) and 1mM PMSF) and finally resuspended in 3 volumes homogenisation buffer. Embryos were lysed using a Dura-Grind Dounce Tissue Grinder (Wheaton) and extracts were then cleared by 10 min centrifugation at 10,000 × g at 4°C followed by two times 5 min centrifugation at 10,000 × g at 4°C. The final supernatants were dialysed against 20 mM Tris-HCl (pH 8.0), 50 mM KCl, 1 mM DTT, 10% glycerol, 0.5 mM EDTA, 1 mM PMSF at 4°C, and then flash-frozen in liquid nitrogen for storage at -80°C in an ultra-low temperature freezer. Immunoprecipitations were done in quadruplicates as described (Fasimoye et al, 2022; https://doi.org/10.1093/nar/gkac534) using either anti-GFP nanobody agarose beads (GFP) or control agarose beads (control) (ChromoTek) and 500 µl extract supplemented with ¼ volume of 175 mM KCl, 20 mM MgCl2. and 20 µl settled agarose beads. After 1 h, the beads were collected by centrifugation at 2000x g for 2 min at 4°C and washed twice by resuspension in 500 µl of 20 mM Tris-HCl (pH8.0), 100 mM KCl, 0.1 mM EDTA, 0.1% NP-40, 1 mM DTT followed by centrifugation at 1000x g for 1 min at 4°C. Then they were transferred into fresh 1.5 ml tubes and washed 3 more times with the same buffer. After removal of the last wash, settled beads were treated with 200 µl 0.2 mg/ml Proteinase K in 200 mM Tris-HCl (pH7.5), 1% SDS and 1 mM EDTA at 65°C for 15 min. Then the RNA was recovered by two subsequent extractions with acidic phenol:chloroform:isoamylalcohol (125:24:1, pH 4.5), supplemented with 10 µg linear acrylamide and concentrated by ethanol precipitation, washed with 70% ethanol and air dried. Libraries were prepared using the Diagenode D-Plex Small RNA-seq Kit for Illumina following the manufacturer’s instructions.

text: embryo

characteristic: developmental stage

text: uocIs1 II; unc-119(ed3) III; sna-2(fe124[sna-2::GFP^3xFLAG]) IV

characteristic: genotype

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

characteristic: strain

text: SNA-2_PE1038_anti_GFP _1


E-MTAB-13193:SNA-2_PE1038_anti_GFP _2

text: UNIVERSITYOFABERDEEN

text: public

text: E-MTAB-13193:SNA-2_PE1038_anti_GFP _2

text: ArrayExpress

text: not collected

text: embryo

text: not collected

text: not applicable

characteristic: isolate

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

text: SNA-2_PE1038_anti_GFP _2


E-MTAB-13193:SNA-2_PE1038_anti_GFP _3

text: UNIVERSITYOFABERDEEN

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-13193:SNA-2_PE1038_anti_GFP _3

text: ArrayExpress

text: not collected

text: embryo

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: SNA-2_PE1038_anti_GFP _3

characteristic: title


E-MTAB-13193:SNA-2_PE1038_anti_GFP _4

characteristic: ENA first public

text: UNIVERSITYOFABERDEEN

text: public

characteristic: INSDC status

text: E-MTAB-13193:SNA-2_PE1038_anti_GFP _4

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: embryo

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: SNA-2_PE1038_anti_GFP _4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITYOFABERDEEN

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: embryo

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans


text: UNIVERSITYOFABERDEEN

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

characteristic: description

text: embryo

text: uocIs1 II; sna-3(fe92[sna-3::GFP^3xFLAG]) unc-119(ed3) III

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans


text: UNIVERSITYOFABERDEEN

text: public

text: ArrayExpress

characteristic: broker name

text: not collected

text: embryo

characteristic: developmental stage

text: snr-2(fe82[GFP::3xFLAG::snr-2]) I

characteristic: genotype

text: not collected

text: not applicable

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans


text: UNIVERSITYOFABERDEEN

text: public

text: ArrayExpress

text: not collected

text: embryo

text: sut-1(fe79[sut-1::GFP^3xFLAG]) II

text: not collected

text: not applicable

characteristic: isolate

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC last update

text: public

tag: Namespace:FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 14

text: Algeria

text: Tlemcen

characteristic: geographic location (region and locality)

text: healthy

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Pasteurized milk storage tank

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 18

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

text: Pipeline of pasteurized milk

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato

characteristic: title


characteristic: External Id

text: public

characteristic: SRA accession

text: Université Abou Bekr Belkaid Tlemcen

characteristic: collection date

text: Strain 44

characteristic: description

text: Algeria

characteristic: geographic location (country and/or sea)

text: Tlemcen

text: healthy

text: Bos taurus

text: Pipeline of pasteurized milk

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 80

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

characteristic: isolate

text: Raw recombined milk storage tank

text: Bacillus cereus

characteristic: organism

text: Bacillus cereus

text: sensu lato


characteristic: INSDC center name

text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 82

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

text: Raw milk storage tank

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


characteristic: INSDC last update

text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 89

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

text: Pasteurized recombined milk storage tank

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 100

text: Algeria

text: Tlemcen

characteristic: geographic location (region and locality)

text: healthy

text: Bos taurus

text: Raw milk storage tank

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 107

text: Algeria

text: Tlemcen

text: healthy

characteristic: host health state

text: Bos taurus

text: Pipeline of pasteurized recombined milk

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 109

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

characteristic: host scientific name

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


characteristic: ENA first public

text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 120

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

text: Pipeline of pasteurized recombined milk

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


characteristic: ENA-CHECKLIST

text: public

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 123

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

text: Pipeline of pasteurized recombined milk

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


text: public

characteristic: INSDC status

text: Université Abou Bekr Belkaid Tlemcen

text: Strain 126-1

text: Algeria

text: Tlemcen

text: healthy

text: Bos taurus

text: Pipeline of raw milk

text: Bacillus cereus

text: Bacillus cereus

text: sensu lato


text: Luxembourg Institute of Health

text: public

tag: Namespace:Luxembourg Institute of Health

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Fecal sample at day 22 from mouse (ID 822) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 60 from mouse (ID 822) colonised with 14SM and switched to a FR diet (Cr)

text: USA

text: Mus musculus

text: Mus musculus

characteristic: title


text: Luxembourg Institute of Health

text: public

characteristic: SRA accession

characteristic: collection date

text: house mouse

text: Fecal sample at day 61 from mouse (ID 822) colonised with 14SM and switched to a FR diet (Cr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 62 from mouse (ID 822) colonised with 14SM and switched to a FR diet (Cr)

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 63 from mouse (ID 822) colonised with 14SM and switched to a FR diet (Cr)

text: USA

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Luxembourg Institute of Health

characteristic: INSDC center name

text: public

text: house mouse

text: Fecal sample at day 64 from mouse (ID 822) colonised with 14SM and switched to a FR diet (Cr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

characteristic: INSDC last update

text: public

text: house mouse

text: Fecal sample at day 6 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 8 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 15 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 16 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 17 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 18 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 20 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 21 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 22 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 23 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 54 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 64 from mouse (ID NT5) colonised with 14SM and switched to a FR diet (Cr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 6 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 8 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 15 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 16 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 17 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 18 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Fecal sample at day 19 from mouse (ID NT6) colonised with 14SM and switched to a FF diet (noCr)

text: USA

text: Mus musculus

text: Mus musculus


A-firstrun

text: public

text: A-firstrun

tag: Namespace:DST/NRF Centre of Excellence for Biomedical TB research, SAMRC Centre for TB Research

text: ONT WGS from Early positive culture

text: not applicable

text: not applicable

text: Homo sapiens

text: Early positive culture

characteristic: isolate

text: Early positive culture

text: not collected

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Early positive culture

characteristic: strain

text: A-firstrun


B-firstrun

text: DST/NRF Centre of Excellence for Biomedical TB research, SAMRC Centre for TB Research

text: public

text: B-firstrun

text: ONT WGS from Early positive culture

text: not applicable

text: not applicable

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Early positive culture

text: Early positive culture

text: not collected

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Early positive culture

text: B-firstrun


C-firstrun

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: C-firstrun

text: ONT WGS from Early positive culture

text: not applicable

text: not applicable

text: Homo sapiens

text: Early positive culture

text: Early positive culture

text: not collected

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Early positive culture

text: C-firstrun


D-firstrun

text: public

characteristic: INSDC status

text: D-firstrun

characteristic: Submitter Id

text: ONT WGS from Early positive culture

text: not applicable

text: not applicable

text: Homo sapiens

text: Early positive culture

text: Early positive culture

text: not collected

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Early positive culture

text: D-firstrun


E-firstrun

characteristic: External Id

text: public

text: E-firstrun

text: ONT WGS from Early positive culture

text: not applicable

text: not applicable

text: Homo sapiens

text: Early positive culture

text: Early positive culture

text: not collected

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Early positive culture

text: E-firstrun


F-firstrun

text: public

text: F-firstrun

text: ONT WGS from Early positive culture

text: not applicable

text: not applicable

text: Homo sapiens

text: Early positive culture

text: Early positive culture

text: not collected

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Early positive culture

text: F-firstrun

characteristic: title


text: public

characteristic: SRA accession

text: ONT WGS from Early positive culture

text: not applicable

text: not applicable

text: Homo sapiens

text: Early positive culture

text: Early positive culture

text: not collected

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Early positive culture


text: not provided

characteristic: ArrayExpress-Phenotype

text: unknown

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: collection date

text: human

characteristic: common name

text: United Kingdom

text: Homo sapiens

text: Homo sapiens


text: not provided

characteristic: ArrayExpress-PHENOTYPE

text: unknown

characteristic: ArrayExpress-SEX

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: Unknown

characteristic: GENDER

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: not provided

characteristic: PHENOTYPE

text: human

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Centre de recherche CHU Sainte-Justine

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-21-03-2024-15:51:05:590-172176

characteristic: Submitter Id

text: SIRVs-set4 sequenced on Nanopore PromethION using the LSK114 library preparation kit

characteristic: description

text: Canada

text: synthetic construct

text: synthetic construct


text: Centre de recherche CHU Sainte-Justine

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-21-03-2024-15:51:05:590-172177

text: SIRVs-set4 sequenced on Nanopore PromethION using the LSK114 library preparation kit ; subsampled to 40,000 reads

text: Canada

text: synthetic construct

text: synthetic construct

characteristic: title


text: Centre de recherche CHU Sainte-Justine

text: public

text: ena-SAMPLE-TAB-21-03-2024-15:51:05:590-172180

characteristic: collection date

text: Sequins mixA sequenced on Nanopore PromethION using the RNA002 library preparation kit

text: Canada

text: synthetic construct

text: synthetic construct


text: Centre de recherche CHU Sainte-Justine

text: public

text: ena-SAMPLE-TAB-21-03-2024-15:51:05:590-172181

text: Sequins mixA sequenced on Nanopore PromethION using the RNA002 library preparation kit ; subsampled to 150,000 reads

text: Canada

text: synthetic construct

text: synthetic construct


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (0.22-3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (3-20 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (20-200um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a double WP2 plankton net. The sample material was collected at a depth of 0-50 m. The sample was stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 750m. The sample was size-fractionated (0.22-3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a double WP2 plankton net. The sample material was collected at a depth of 0-200 m. The sample was stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 790m. The sample was size-fractionated (0.22-3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 790m. The sample was size-fractionated (> 3um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 75m. The sample was size-fractionated (0.22-3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 75m. The sample was size-fractionated (3-20 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 75m. The sample was size-fractionated (20-200um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (0.22-3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (3-20 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (20-200um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a double WP2 plankton net. The sample material was collected at a depth of 0-50 m. The sample was stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 40m. The sample was size-fractionated (0.22-3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 40m. The sample was size-fractionated (3-20 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 40m. The sample was size-fractionated (20-200um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station MareChiara in the Gulf of Naples, Italy, using a 20um plankton net. The sample material was collected at seawater surface. The sample was stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Sarno in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (0.22-3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Sarno in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (3-20 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Sarno in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 0m. The sample was size-fractionated (20-200um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Sarno in the Gulf of Naples, Italy, using a double WP2 plankton net. The sample material was collected at a depth of 0-10 m. The sample was stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 750m. The sample was size-fractionated (>3 um) and stored in liquid nitrogen for later detection of prokaryote nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

text: marine metagenome


text: East Malling Research

text: public

text: Coir microbiome

text: Coir

characteristic: environment (biome)

text: Polytunnel

characteristic: environment (feature)

text: Coir

characteristic: environment (material)

text: United Kingdom

text: metagenome

characteristic: investigation type

text: root metagenome

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: root metagenome

text: Illumina NovoSeq

characteristic: sequencing method

text: Fungal and bacterial amplicon of coir


text: East Malling Research

characteristic: INSDC center name

text: public

text: Strawberry root microbiome

text: Root

text: Polytunnel

text: Fruit

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: root metagenome

text: plant-associated

text: root metagenome

text: Illumina NovoSeq

text: Fungal and bacterial amplicon of coir


characteristic: ENA first public

text: NEREA

text: public

text: This sample was collected in the context of the NEREA project at the station Capri in the Gulf of Naples, Italy, using a ROSETTE sampler with CTD and Niskin bottles. The sample material, including plankton, was collected at a depth of 40m. The sample was size-fractionated (20-200 um) and stored in liquid nitrogen for later nucleic acid extraction and metagenomic analysis.

text: Mediterranean Sea

text: marine metagenome

characteristic: organism

text: marine metagenome


characteristic: ENA-CHECKLIST

text: Sapienza University

text: public

characteristic: INSDC status

text: terrestrial biome

characteristic: broad-scale environmental context

text: skin epidermis

characteristic: environmental medium

text: Italy

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: urban biome

characteristic: local environmental context

text: human skin metagenome

text: ADSA

text: human skin metagenome


text: Sapienza University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: terrestrial biome

characteristic: collection date

characteristic: description

text: skin epidermis

text: Italy

text: urban biome

text: Staphylococcus aureus

text: ADSA

text: Staphylococcus aureus

characteristic: title


text: Uni Vienna

text: public

text: chimpanzee

characteristic: common name

text: Museum sample from Salzburg

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

characteristic: INSDC center name

text: public

text: eastern gorilla

text: Museum sample from Bonn

text: Republic of the Congo

text: Gorilla beringei

text: Gorilla beringei


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Bonn

text: Republic of the Congo

characteristic: geographic location (country and/or sea)

text: Gorilla gorilla

text: Gorilla gorilla


characteristic: ENA first public

text: Uni Vienna

text: public

text: not provided

text: eastern gorilla

text: Museum sample from Bonn

text: Germany

text: Gorilla beringei

text: Gorilla beringei


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Bonn

text: Cameroon

text: Pan troglodytes

characteristic: organism

text: Pan troglodytes


characteristic: ENA-CHECKLIST

text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Bonn

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

characteristic: INSDC status

text: western lowland gorilla

text: Museum sample from Salzburg

text: Cameroon

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Salzburg

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Salzburg

text: not provided

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Bonn

text: Gabon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: not provided

text: western gorilla

text: Museum sample from Salzburg

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Frankfurt

text: Indonesia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: Sumatran orangutan

text: Museum sample from Frankfurt

text: Indonesia

text: Pongo abelii

text: Pongo abelii


text: Uni Vienna

text: public

text: not provided

text: Bornean orangutan

text: Museum sample from Stuttgart

text: Indonesia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Stuttgart

text: Indonesia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: pygmy chimpanzee

text: Museum sample from Stuttgart

text: not provided

text: Pan paniscus

text: Pan paniscus


text: Uni Vienna

text: public

text: Sumatran orangutan

text: Museum sample from Stuttgart

text: Indonesia

text: Pongo abelii

text: Pongo abelii


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Frankfurt

text: not provided

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: Sumatran orangutan

text: Museum sample from Bonn

text: Indonesia

text: Pongo abelii

text: Pongo abelii


text: Uni Vienna

text: public

text: pygmy chimpanzee

text: Museum sample from Salzburg

text: Germany

text: Pan paniscus

text: Pan paniscus


text: Uni Vienna

text: public

text: pygmy chimpanzee

text: Museum sample from Salzburg

text: Republic of the Congo

text: Pan paniscus

text: Pan paniscus


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Dresden

text: Indonesia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Prague

text: not provided

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: Sumatran orangutan

text: Museum sample from Prague

text: not provided

text: Pongo abelii

text: Pongo abelii


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Prague

text: Indonesia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: not provided

text: Bornean orangutan

text: Museum sample from Prague

text: not provided

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: not provided

text: Sumatran orangutan

text: Museum sample from Berlin

text: Indonesia

text: Pongo abelii

text: Pongo abelii


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Frankfurt

text: not provided

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Vienna

text: Republic of the Congo

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Prague

text: not provided

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Frankfurt

text: Indonesia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Vienna

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: pygmy chimpanzee

text: Museum sample from Frankfurt

text: not provided

text: Pan paniscus

text: Pan paniscus


text: Uni Vienna

text: public

text: Sumatran orangutan

text: Museum sample from Frankfurt

text: Indonesia

text: Pongo abelii

text: Pongo abelii


text: Uni Vienna

text: public

text: not provided

text: pygmy chimpanzee

text: Museum sample from Stuttgart

text: not provided

text: Pan paniscus

text: Pan paniscus


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Dresden

text: Malaysia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: Sumatran orangutan

text: Museum sample from Bonn

text: Indonesia

text: Pongo abelii

text: Pongo abelii


text: Uni Vienna

text: public

text: pygmy chimpanzee

text: Museum sample from Bonn

text: not provided

text: Pan paniscus

text: Pan paniscus


text: Uni Vienna

text: public

text: pygmy chimpanzee

text: Museum sample from Salzburg

text: not provided

text: Pan paniscus

text: Pan paniscus


text: Uni Vienna

text: public

text: Bornean orangutan

text: Museum sample from Prague

text: Czechia

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Vienna

text: not provided

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: not provided

text: western gorilla

text: Museum sample from Prague

text: not provided

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Prague

text: not provided

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: not provided

text: Bornean orangutan

text: Museum sample from Prague

text: not provided

text: Pongo pygmaeus

text: Pongo pygmaeus


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Salzburg

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Frankfurt

text: not provided

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Frankfurt

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Frankfurt

text: Equatorial Guinea

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Frankfurt

text: Gabon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Frankfurt

text: not provided

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Frankfurt

text: Republic of the Congo

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: Museum sample from Frankfurt

text: Cameroon

text: Pan troglodytes schweinfurthii

text: Pan troglodytes schweinfurthii


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Frankfurt

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: eastern gorilla

text: Museum sample from Frankfurt

text: Rwanda

text: Gorilla beringei

text: Gorilla beringei


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Frankfurt

text: Sudan

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Salzburg

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Bonn

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western lowland gorilla

text: Museum sample from Salzburg

text: not provided

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla


text: Uni Vienna

text: public

text: eastern gorilla

text: Museum sample from Bonn

text: Democratic Republic of the Congo

text: Gorilla beringei

text: Gorilla beringei


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Frankfurt

text: Guinea

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Dresden

text: Gabon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Dresden

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Dresden

text: Equatorial Guinea

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Dresden

text: Gabon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Dresden

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: western lowland gorilla

text: Museum sample from Salzburg

text: Cameroon

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Bonn

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Frankfurt

text: not provided

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: eastern gorilla

text: Museum sample from Bonn

text: Republic of the Congo

text: Gorilla beringei

text: Gorilla beringei


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Salzburg

text: not provided

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Bonn

text: Republic of the Congo

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: not provided

text: western gorilla

text: Museum sample from Salzburg

text: not provided

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Vienna

text: Republic of the Congo

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Vienna

text: not provided

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: western gorilla

text: Museum sample from Vienna

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: not provided

text: western lowland gorilla

text: Museum sample from Berlin

text: Angola

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla


text: Uni Vienna

text: public

text: eastern mountain gorilla

text: Museum sample from Berlin

text: Republic of the Congo

text: Gorilla beringei beringei

text: Gorilla beringei beringei


text: Uni Vienna

text: public

text: not provided

text: eastern lowland gorilla

text: Museum sample from Berlin

text: Republic of the Congo

text: Gorilla beringei graueri

text: Gorilla beringei graueri


text: Uni Vienna

text: public

text: not provided

text: Cross River gorilla

text: Museum sample from Berlin

text: Cameroon

text: Gorilla gorilla diehli

text: Gorilla gorilla diehli


text: Uni Vienna

text: public

text: Cross River gorilla

text: Museum sample from Berlin

text: Cameroon

text: Gorilla gorilla diehli

text: Gorilla gorilla diehli


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Berlin

text: Nigeria

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: not provided

text: chimpanzee

text: Museum sample from Berlin

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Berlin

text: Cameroon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: not provided

text: chimpanzee

text: Museum sample from Berlin

text: Ghana

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Berlin

text: Gabon

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: eastern lowland gorilla

text: Museum sample from Berlin

text: Republic of the Congo

text: Gorilla beringei graueri

text: Gorilla beringei graueri


text: Uni Vienna

text: public

text: not provided

text: western gorilla

text: Museum sample from Berlin

text: Cameroon

text: Gorilla gorilla

text: Gorilla gorilla


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Berlin

text: Rwanda

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: not provided

text: chimpanzee

text: Museum sample from Berlin

text: Angola

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Berlin

text: Central African Republic

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Berlin

text: Republic of the Congo

text: Pan troglodytes

text: Pan troglodytes


text: Uni Vienna

text: public

text: chimpanzee

text: Museum sample from Berlin

text: Togo

text: Pan troglodytes

text: Pan troglodytes


text: IPD

text: public

text: ena-SAMPLE-TAB-24-04-2024-13:42:41:133-64801

text: Bacteriophage

text: Senegal

text: Acinetobacter phage APK16

text: Acinetobacter phage APK16

text: Characterization of two friunavirus phages and their inhibition effect on biofilms of Acinetobacter baumanii.


text: IPD

text: public

text: ena-SAMPLE-TAB-24-04-2024-13:42:41:133-64802

text: Bacteriophage

text: Senegal

text: Acinetobacter virus fBenAci003

text: Acinetobacter virus fBenAci003


text: Burkholderia pseudomallei

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei


text: purple tipped acropora

text: The Great Barrier Reef and Red Sea Sequencing Project - Coral Genome of Acropora kenti

text: Australia

text: -18.608001 +146.489202

characteristic: lat lon

text: Acropora kenti

text: Acropora kenti

text: Coral genome of Acropora kenti - Genomic


text: University of Tehran / Iranian Biological Resource Center

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: This biosample is a metagenomic assembly obtained from the aquatic metagenome BioSamples: SAMN03444909, SAMN03444948, and SAMN03444961

characteristic: derived-from

text: The Caspian Sea is the world's largest enclosed body of water. The northern part of the Caspian sea is largely a freshwater habitat. Salinity increases gradually towards the middle part, and the southernmost part is a stable brackish ecosystem with 1.1% salinty (ca. one third of the open ocean). This biosample contains metagenomic data from depth profile of the Caspian. Briefly, 50L of water was collected from each depth and filtered serially through 20, 5 and 0.22 micron filters. This metagenome deposited here was obtained by sequencing (Illumina HiSeq) of the 0.22 micron fraction. After assembly and annotation Contigs were considered to belong to each phylum if a majority of genes gave best BLAST hits to that phylum. In each phylum contigs were grouped using taxonomy, principal component analysis of tetranucleotide frequencies, GC% and abundance profile in the metagenomes.

text: TRUE

characteristic: environmental sample

text: Iran: Caspian Sea near Babolsar

characteristic: geo loc name

characteristic: isolate

text: Capian Sea

characteristic: isolation source

text: aquatic metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: Alphaproteobacteria bacterium casp-alpha1

text: metagenomic assembly

characteristic: sample type

text: uncultured Alphaproteobacterium casp-alpha1


characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: collection date

text: The Caspian Sea is the world's largest enclosed body of water. The northern part of the Caspian sea is largely a freshwater habitat. Salinity increases gradually towards the middle part, and the southernmost part is a stable brackish ecosystem with 1.1% salinty (ca. one third of the open ocean). This biosample contains a genome in phylum Alphaproteobacteria assembled from Caspian Sea depth profile metagenomes.

characteristic: description

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha2

characteristic: organism

text: metagenomic assembly

characteristic: title


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha3

text: metagenomic assembly


text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: derived-from

text: TRUE

characteristic: environmental sample

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha4

text: metagenomic assembly


text: live

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

characteristic: geo loc name

characteristic: isolate

text: Capian Sea

characteristic: isolation source

text: aquatic metagenome

characteristic: metagenome source

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha5

text: metagenomic assembly


characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

characteristic: metagenomic

text: Alphaproteobacteria bacterium casp-alpha6

text: metagenomic assembly

characteristic: sample type


text: live

text: Microbe, viral or environmental

characteristic: collection date

characteristic: description

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha7

characteristic: organism

text: metagenomic assembly

characteristic: title


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha8

text: metagenomic assembly


text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: derived-from

text: TRUE

characteristic: environmental sample

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha9

text: metagenomic assembly


text: live

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

characteristic: geo loc name

characteristic: isolate

text: Capian Sea

characteristic: isolation source

text: aquatic metagenome

characteristic: metagenome source

text: TRUE

text: Alphaproteobacteria bacterium casp-alpha10

text: metagenomic assembly


Actinobacteria bacterium casp-actino1

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

characteristic: metagenomic

text: Actinobacteria bacterium casp-actino1

text: metagenomic assembly

characteristic: sample type

text: Actinobacteria bacterium casp-actino1


Actinobacteria bacterium casp-actino2

text: live

text: Microbe, viral or environmental

characteristic: collection date

characteristic: description

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Actinobacteria bacterium casp-actino2

characteristic: organism

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino2

characteristic: title


Actinobacteria bacterium casp-actino3

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Actinobacteria bacterium casp-actino3

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino3


Actinobacteria bacterium casp-actino4

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: derived-from

text: TRUE

characteristic: environmental sample

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Actinobacteria bacterium casp-actino4

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino4


Actinobacteria bacterium casp-actino5

text: live

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

characteristic: geo loc name

characteristic: isolate

text: Capian Sea

characteristic: isolation source

text: aquatic metagenome

characteristic: metagenome source

text: TRUE

text: Actinobacteria bacterium casp-actino5

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino5


Actinobacteria bacterium casp-actino6

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

characteristic: metagenomic

text: Actinobacteria bacterium casp-actino6

text: metagenomic assembly

characteristic: sample type

text: Actinobacteria bacterium casp-actino6


Actinobacteria bacterium casp-actino7

text: live

text: Microbe, viral or environmental

characteristic: collection date

characteristic: description

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Actinobacteria bacterium casp-actino7

characteristic: organism

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino7

characteristic: title


Actinobacteria bacterium casp-actino8

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Actinobacteria bacterium casp-actino8

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino8


Actinobacteria bacterium casp-actino9

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: derived-from

text: TRUE

characteristic: environmental sample

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Actinobacteria bacterium casp-actino9

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino9


Actinobacteria bacterium casp-actino10

text: live

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

characteristic: geo loc name

characteristic: isolate

text: Capian Sea

characteristic: isolation source

text: aquatic metagenome

characteristic: metagenome source

text: TRUE

text: Actinobacteria bacterium casp-actino10

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino10


Actinobacteria bacterium casp-actino11

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

characteristic: metagenomic

text: Actinobacteria bacterium casp-actino11

text: metagenomic assembly

characteristic: sample type

text: Actinobacteria bacterium casp-actino11


Actinobacteria bacterium casp-actino12

text: live

text: Microbe, viral or environmental

characteristic: collection date

characteristic: description

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Actinobacteria bacterium casp-actino12

characteristic: organism

text: metagenomic assembly

text: Actinobacteria bacterium casp-actino12

characteristic: title


Thaumarchaeota archaeum casp-thauma1

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Thaumarchaeota archaeon casp-thauma1

text: metagenomic assembly

text: Thaumarchaeota archaeon casp-thauma1


Thaumarchaeota archaeum casp-thauma2

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: derived-from

text: TRUE

characteristic: environmental sample

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

text: Thaumarchaeota archaeon casp-thauma2

text: metagenomic assembly

text: Thaumarchaeota archaeon casp-thauma2


Thaumarchaeota archaeum casp-thauma3

text: live

text: Microbe, viral or environmental

text: TRUE

text: Iran: Caspian Sea near Babolsar

characteristic: geo loc name

characteristic: isolate

text: Capian Sea

characteristic: isolation source

text: aquatic metagenome

characteristic: metagenome source

text: TRUE

text: Thaumarchaeota archaeon casp-thauma3

text: metagenomic assembly

text: Thaumarchaeota archaeon casp-thauma3


Thaumarchaeota archaeum casp-thauma4

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: TRUE

text: Iran: Caspian Sea near Babolsar

text: Capian Sea

text: aquatic metagenome

text: TRUE

characteristic: metagenomic

text: Thaumarchaeota archaeon casp-thauma4

text: metagenomic assembly

characteristic: sample type

text: Thaumarchaeota archaeon casp-thauma4


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: NHLBI ACCORD

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Peripheral Blood

characteristic: body site

text: WBC

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: NHLBI ACCORD

characteristic: submitter handle

text: Non-tumor DNA sample from Peripheral Blood of a human participant in the dbGaP study Action to Control Cardiovascular Risk in Diabetes (ACCORD)

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: NHLBI ACCORD

text: Peripheral Blood

text: WBC

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: Prospective Longitudinal Cohort

text: Action to Control Cardiovascular Risk in Diabetes (ACCORD)

text: NHLBI ACCORD


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

text: RNA

characteristic: analyte type

text: SCAP-T

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: neuron

characteristic: histological type

text: No

characteristic: is tumor

text: RNA Seq (NGS)

text: Homo sapiens

text: Case Set

text: SCAP-T

text: Non-tumor RNA sample from N/A of a human participant in the dbGaP study Single Cell Analysis Program - Transcriptome (SCAP-T) (USC)


text: dbGaP

text: live

text: Generic

text: RNA

text: SCAP-T

text: neuron

text: No

text: RNA Seq (NGS)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: Case Set

characteristic: study design

text: Single Cell Analysis Program - Transcriptome (SCAP-T) (USC)

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: SCAP-T


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RNA

text: SCAP-T

text: right temporal lobe (fusiform gyrus)

characteristic: body site

text: neuron

text: No

text: RNA Seq (NGS)

text: Homo sapiens

text: Case Set

text: SCAP-T

characteristic: submitter handle

text: Non-tumor RNA sample from right temporal lobe (fusiform gyrus) of a human participant in the dbGaP study Single Cell Analysis Program - Transcriptome (SCAP-T) (USC)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: Blood

text: No

text: Homo sapiens

text: male

characteristic: sex

text: Case Set

text: Atrial Fibrillation

characteristic: study disease

text: Yes

characteristic: subject is affected

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study NHLBI TOPMed - NHGRI CCDG: The Vanderbilt AF Ablation Registry


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: Blood

text: No

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

text: Case Set

characteristic: study design

text: Atrial Fibrillation

text: NHLBI TOPMed - NHGRI CCDG: The Vanderbilt AF Ablation Registry

characteristic: study name

text: Yes

characteristic: submitted sample id

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: Blood

characteristic: body site

text: No

text: Homo sapiens

text: female

text: Case Set

text: Atrial Fibrillation

text: Yes

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study NHLBI TOPMed - NHGRI CCDG: The Vanderbilt AF Ablation Registry

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: NCI Toxicities Treatment-Related Predictors

characteristic: biospecimen repository

text: FVSUSHsut

text: Blood

text: Peripheral blood

characteristic: histological type

text: No

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Clinical Trial

text: No

characteristic: subject is affected

text: FVSUSHsut

text: FVSUSHsut

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study GWAS for Breast Cancer Chemotherapy Toxicities in S0221


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: Blood

text: Peripheral blood

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Clinical Trial

characteristic: study design

text: GWAS for Breast Cancer Chemotherapy Toxicities in S0221

characteristic: study name

text: No

characteristic: submitted sample id

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: VKLnzrwxU

text: Blood

characteristic: body site

text: Peripheral blood

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Clinical Trial

text: No

text: VKLnzrwxU

text: VKLnzrwxU

characteristic: submitter handle

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: HXHLUPCVD

text: Blood

text: Peripheral blood

characteristic: histological type

text: No

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Clinical Trial

text: No

characteristic: subject is affected

text: HXHLUPCVD

text: HXHLUPCVD


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: FVAkGNwxr

characteristic: biospecimen repository sample id

text: Blood

text: Peripheral blood

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Clinical Trial

characteristic: study design

characteristic: study name

text: No

text: FVAkGNwxr

characteristic: submitted sample id

text: FVAkGNwxr

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: IEiGDVJDn

text: Blood

characteristic: body site

text: Peripheral blood

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Clinical Trial

text: No

text: IEiGDVJDn

text: IEiGDVJDn

characteristic: submitter handle

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: Blood

text: Peripheral blood

characteristic: histological type

text: No

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Clinical Trial

text: Peripheral Nervous System Diseases

characteristic: study disease

text: Yes

characteristic: subject is affected


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

text: sINGxmRJL

characteristic: biospecimen repository sample id

text: Blood

text: Peripheral blood

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Clinical Trial

characteristic: study design

characteristic: study name

text: No

text: sINGxmRJL

characteristic: submitted sample id

text: sINGxmRJL

characteristic: submitted subject id


characteristic: External Id

text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: GwykeCncc

text: Blood

characteristic: body site

text: Peripheral blood

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Clinical Trial

text: No

text: GwykeCncc

text: GwykeCncc

characteristic: submitter handle

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: XwAirqLqv

text: Blood

text: Peripheral blood

characteristic: histological type

text: No

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Clinical Trial

text: No

characteristic: subject is affected

text: XwAirqLqv

text: XwAirqLqv


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: OasakuDyf

characteristic: biospecimen repository sample id

text: Blood

text: Peripheral blood

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Clinical Trial

characteristic: study design

characteristic: study name

text: No

text: OasakuDyf

characteristic: submitted sample id

text: OasakuDyf

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: SgWqHPyJf

text: Blood

characteristic: body site

text: Peripheral blood

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Clinical Trial

text: No

text: SgWqHPyJf

text: SgWqHPyJf

characteristic: submitter handle

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: hLJJSvtFP

text: Blood

text: Peripheral blood

characteristic: histological type

text: No

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Clinical Trial

text: No

characteristic: subject is affected

text: hLJJSvtFP

text: hLJJSvtFP


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: VcqtXxhiP

characteristic: biospecimen repository sample id

text: Blood

text: Peripheral blood

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: male

text: Clinical Trial

characteristic: study design

characteristic: study name

text: No

text: VcqtXxhiP

characteristic: submitted sample id

text: VcqtXxhiP

characteristic: submitted subject id

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study GWAS for Breast Cancer Chemotherapy Toxicities in S0221


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: LQlJVOXjb

text: Blood

characteristic: body site

text: Peripheral blood

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Clinical Trial

text: No

text: LQlJVOXjb

text: LQlJVOXjb

characteristic: submitter handle

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: blood

text: No

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Family/Twin/Trios

text: Non-tumor DNA sample from blood of a human female participant in the dbGaP study Whole Genome Study for De Novo Mutation Rates


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: blood

text: No

characteristic: is tumor

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: female

text: Family/Twin/Trios

characteristic: study design

text: Whole Genome Study for De Novo Mutation Rates

characteristic: study name


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: blood

text: No

text: SNP Genotypes (NGS)

text: Homo sapiens

text: male

text: Family/Twin/Trios

characteristic: submitted sample id

characteristic: submitted subject id

text: Non-tumor DNA sample from blood of a human male participant in the dbGaP study Whole Genome Study for De Novo Mutation Rates


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: Blood

characteristic: body site

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Case-Control

text: No

characteristic: subject is affected

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study Genetic Risk Underlying Racial Disparities in Uterine Fibroids

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

text: Genetic Risk Underlying Racial Disparities in Uterine Fibroids

text: No


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Blood

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

characteristic: study design

text: Leiomyoma

characteristic: study disease

characteristic: study name

text: Yes


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: blood

characteristic: body site

text: blood

characteristic: histological type

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

text: female

text: Case-Control

text: Diabetes Mellitus, Type 2

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from blood of a human female participant in the dbGaP study Slim Initiative in Genomic Medicine for the Americas (SIGMA): Diabetes in Mexico Study (DMS)


characteristic: External Id

text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: blood

text: blood

text: SNP/CNV Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

text: No

text: DNA sample from blood of a human male participant in the dbGaP study Slim Initiative in Genomic Medicine for the Americas (SIGMA): Diabetes in Mexico Study (DMS)

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: blood

text: blood

text: SNP/CNV Genotypes (NGS)

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

characteristic: study design

text: Diabetes Mellitus, Type 2

characteristic: study disease

text: Slim Initiative in Genomic Medicine for the Americas (SIGMA): Diabetes in Mexico Study (DMS)

characteristic: study name

text: Yes


characteristic: External Id

text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: blood

characteristic: body site

text: blood

characteristic: histological type

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

text: female

text: Case-Control

text: Diabetes Mellitus, Type 2

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: blood

text: blood

text: SNP/CNV Genotypes (NGS)

characteristic: molecular data type

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

text: Diabetes Mellitus, Type 2

text: Yes

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: blood

text: blood

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

characteristic: study design

text: Diabetes Mellitus, Type 2

characteristic: study disease

characteristic: study name

text: Yes


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: blood

characteristic: body site

text: blood

characteristic: histological type

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

text: female

text: Case-Control

text: No

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


characteristic: External Id

text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: blood

text: blood

text: SNP/CNV Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

text: No

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: blood

text: blood

text: SNP/CNV Genotypes (NGS)

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

characteristic: study design

characteristic: study name

text: No


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: NCI SubSaharan Esophageal Squamous Cell Carcinoma

text: Esophagus

characteristic: body site

text: Esophageal squamous cell carcinoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

text: Esophageal Neoplasm

characteristic: study disease

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Esophageal Neoplasm tumor DNA sample from Esophagus of a human male participant in the dbGaP study Sub-Saharan Sophageal Squamous Cell Carcinoma Molecular Analysis


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Family/Twin/Trios

text: DNA sample from a human male participant in the dbGaP study Mexican-American Coronary Artery Disease Study (MACAD)

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Family/Twin/Trios

characteristic: study design

characteristic: study name

text: DNA sample from a human female participant in the dbGaP study Mexican-American Coronary Artery Disease Study (MACAD)


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Family/Twin/Trios

text: Mexican-American Coronary Artery Disease Study (MACAD)

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

characteristic: analyte type

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Family/Twin/Trios


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: DLBCL

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

text: Lymphoma, Large B-Cell, Diffuse

characteristic: study disease

text: Yes

characteristic: subject is affected

text: Lymphoma, Large B-Cell, Diffuse tumor DNA sample from a human female participant in the dbGaP study Genomic Variation in Diffuse Large B Cell Lymphomas


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: DLBCL

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Case Set

characteristic: study design

text: Lymphoma, Large B-Cell, Diffuse

text: Yes

text: Lymphoma, Large B-Cell, Diffuse tumor DNA sample from a human male participant in the dbGaP study Genomic Variation in Diffuse Large B Cell Lymphomas

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: DLBCL

text: Yes

text: Homo sapiens

text: male

text: Case Set

text: Lymphoma, Large B-Cell, Diffuse

text: Genomic Variation in Diffuse Large B Cell Lymphomas

characteristic: study name

text: Yes

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: DLBCL

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

text: Lymphoma, Large B-Cell, Diffuse

text: Yes

text: Lymphoma, Large B-Cell, Diffuse tumor RNA sample from a human female participant in the dbGaP study Genomic Variation in Diffuse Large B Cell Lymphomas


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: DLBCL

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Case Set

text: Lymphoma, Large B-Cell, Diffuse

characteristic: study disease

text: Yes

characteristic: subject is affected

text: Lymphoma, Large B-Cell, Diffuse tumor RNA sample from a human male participant in the dbGaP study Genomic Variation in Diffuse Large B Cell Lymphomas


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: DLBCL

text: Yes

text: Homo sapiens

text: Case Set

characteristic: study design

text: Lymphoma, Large B-Cell, Diffuse

characteristic: study name

text: Yes

characteristic: submitted sample id

text: Lymphoma, Large B-Cell, Diffuse tumor DNA sample from a human participant in the dbGaP study Genomic Variation in Diffuse Large B Cell Lymphomas

characteristic: title


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: DLBCL

characteristic: histological type

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Lymphoma, Large B-Cell, Diffuse

text: Yes

characteristic: submitted subject id

characteristic: submitter handle


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: DLBCL

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: Case Set

text: Lymphoma, Large B-Cell, Diffuse

text: Yes

text: Lymphoma, Large B-Cell, Diffuse tumor RNA sample from a human participant in the dbGaP study Genomic Variation in Diffuse Large B Cell Lymphomas


text: CBDM, Pathology, Harvard Medical School

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 7 weeks old

characteristic: age

text: Dendritic Cell

characteristic: cell type

text: Mus musculus

text: PI- (CD3/CD19/NK1.1/Ly6G)- CD11c+ MHC+ CD8a- CD103- CD11b-

characteristic: sorting markers

text: Peyer's Patch

characteristic: strain


text: CBDM, Pathology, Harvard Medical School

text: live

characteristic: INSDC status

text: Generic

text: 7 weeks old

text: Dendritic Cell

text: Mus musculus

text: Lymph Node (Mesenteric)

characteristic: title


text: CBDM, Pathology, Harvard Medical School

text: live

text: Generic

text: 7 weeks old

text: Dendritic Cell

text: Mus musculus

text: PI- (CD3/CD19/NK1.1/Ly6G)- CD11c+ MHC+ CD8a- CD103- CD11b+

text: Peyer's Patch


text: CBDM, Pathology, Harvard Medical School

text: live

text: Generic

text: 7 weeks old

text: Dendritic Cell

text: Mus musculus

text: Lymph Node (Mesenteric)


Hippophae rhamnoides Linn.

text: seabuckthorn fruit

text: live

text: Plant

text: the mature stage

text: seabuckthorn

characteristic: ecotype

text: China: Neimenggu

text: Hippophae rhamnoides

text: fruit

characteristic: tissue

text: Plant sample from seabuckthorn


characteristic: External Id

text: University of Liverpool

text: live

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: United Kingdom: St Helens

text: Cyprinus carpio

characteristic: host

text: Wild

characteristic: isolate

text: 53.46 N 2.74 W

text: not collected

text: Argulus japonicus

text: not collected

characteristic: ploidy

text: sexual

characteristic: propagation

text: MIGS Eukaryotic sample from Argulus japonicus


text: Southwest University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: cultivar

text: Grey moss period17

text: Brassica napus

characteristic: organism

text: flower bud


text: Southwest University

text: live

characteristic: INSDC status

text: Plant

text: Grey moss period18

text: Brassica napus

text: stem apex

characteristic: title


text: Southwest University

text: live

text: Plant

text: Grey moss period19

text: Brassica napus

text: flower bud

characteristic: tissue


characteristic: External Id

text: Southwest University

text: live

text: Plant

text: Grey moss period20

text: Brassica napus

text: stem apex


text: Southwest University

text: live

text: Plant

characteristic: NCBI submission model

text: Grey moss period21

text: Brassica napus

text: flower bud


text: Southwest University

text: live

text: Plant

text: Grey moss period22

text: Brassica napus

text: stem apex