status: PUBLIC

characteristic: External Id

text: Northeast Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: missing

text: missing

text: missing

text: China

text: missing

text: missing

text: missing

text: Bifidobacterium apis

characteristic: organism

text: missing

text: Bifidobacterium sp. F753-1

characteristic: strain

text: Bifidobacterium sp. F753-1

characteristic: title

text: type strain of Bifidobacterium apis

characteristic: type-material


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: GREG ROUSE | CHARLOTTE SEID

text: SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: depth

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: California | San Diego | Scripps Institution of Oceanography at the University of California San Diego | Marine Biology Research Division | Hubbs Hall | Greg Rouse Laboratory

characteristic: geographic location (region and locality)

text: marine laboratory culture

characteristic: habitat

text: GREG ROUSE

text: adult

characteristic: lifestage

text: Ophryotrocha siberti

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: proxy voucher

characteristic: proxy voucher url

text: preserved by hand from laboratory culture

characteristic: sample collection method

text: Ophryotrocha siberti

text: NOT COLLECTED

characteristic: sex

text: 9569b9c1-42ed-4cf3-98ab-25a393d5d436-ASG-specimen

characteristic: tolid

characteristic: voucher institution url


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collecting institution

text: USA

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Ophryotrocha siberti

text: NOT COLLECTED

text: a3d9f981-bdea-4701-b592-27e4d110ae89-ASG-specimen

characteristic: title


text: Queen Mary University of London

text: NOT PROVIDED

text: EarlhamInstitute

text: NOT PROVIDED

text: COPO

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collection date

characteristic: depth

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: marine laboratory culture

characteristic: habitat

text: GREG ROUSE

text: adult

characteristic: lifestage

text: Ophryotrocha siberti

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Ophryotrocha siberti

text: NOT COLLECTED

text: 84f8306c-7cca-4cdc-bf7d-202d9b09dec7-ASG-specimen


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: NOT PROVIDED

text: COPO

text: GREG ROUSE | CHARLOTTE SEID

text: USA

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

text: WHOLE ORGANISM

text: ASG

characteristic: proxy voucher

characteristic: proxy voucher url

characteristic: sample collection method

text: Ophryotrocha siberti

text: NOT COLLECTED

characteristic: sex

text: 362cc64b-0c15-4117-890a-9f23bd7ec7ac-ASG-specimen

characteristic: tolid

characteristic: voucher institution url


text: Queen Mary University of London

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Ophryotrocha siberti

text: NOT COLLECTED

text: e1d65b8d-a5f5-443f-82b2-57d8e231b5de-ASG-specimen

characteristic: title


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: NOT PROVIDED

text: COPO

text: GREG ROUSE | CHARLOTTE SEID

text: USA

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: marine laboratory culture

characteristic: habitat

text: GREG ROUSE

text: adult

characteristic: lifestage

text: Ophryotrocha siberti

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Ophryotrocha siberti

text: NOT COLLECTED

text: 32acc9e6-a97a-4d14-a4c6-e698bd45442c-ASG-specimen


text: Queen Mary University of London

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collecting institution

text: USA

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

text: WHOLE ORGANISM

text: ASG

characteristic: proxy voucher

characteristic: proxy voucher url

characteristic: sample collection method

text: Ophryotrocha siberti

text: NOT COLLECTED

characteristic: sex

text: 407c1316-f5b9-4851-8fde-419b473af089-ASG-specimen

characteristic: tolid

characteristic: voucher institution url


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: NOT PROVIDED

text: COPO

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collection date

characteristic: depth

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

characteristic: organism

text: MULTICELLULAR ORGANISMS IN CULTURE

text: ASG

characteristic: sample derived from

text: Ophryotrocha siberti

text: NOT COLLECTED

text: N

characteristic: symbiont

text: 12a9f09a-9df7-462e-840d-e9e15060b7a0-asg

characteristic: title


text: Queen Mary University of London

text: EarlhamInstitute

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collecting institution

text: USA

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: marine laboratory culture

characteristic: habitat

text: GREG ROUSE

text: adult

characteristic: lifestage

text: Ophryotrocha siberti

text: MULTICELLULAR ORGANISMS IN CULTURE

characteristic: organism part

text: ASG

characteristic: project name

characteristic: proxy voucher

characteristic: proxy voucher url

text: Ophryotrocha siberti

text: NOT COLLECTED

text: N

text: 0233eee9-5834-422c-94f6-d5c3c0283d67-asg


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: NOT PROVIDED

text: COPO

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collection date

characteristic: depth

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

text: MULTICELLULAR ORGANISMS IN CULTURE

text: ASG

characteristic: sample collection method

text: Ophryotrocha siberti

text: NOT COLLECTED

characteristic: sex

text: N

text: f51b8165-7489-440a-9bd1-a3ae245024ac-asg

characteristic: tolid

characteristic: voucher institution url


text: Queen Mary University of London

text: EarlhamInstitute

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collecting institution

text: USA

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: marine laboratory culture

characteristic: habitat

text: GREG ROUSE

text: adult

characteristic: lifestage

text: Ophryotrocha siberti

characteristic: organism

text: MULTICELLULAR ORGANISMS IN CULTURE

text: ASG

characteristic: sample derived from

text: Ophryotrocha siberti

text: NOT COLLECTED

text: N

characteristic: symbiont

text: 28ad8d82-ab98-4646-a5a5-ca537cd0ab79-asg

characteristic: title


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: NOT PROVIDED

text: COPO

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collection date

characteristic: depth

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

text: MULTICELLULAR ORGANISMS IN CULTURE

characteristic: organism part

text: ASG

characteristic: project name

characteristic: proxy voucher

characteristic: proxy voucher url

text: Ophryotrocha siberti

text: NOT COLLECTED

text: N

text: 9d838ad4-f895-4fc9-8eb3-d5daadb401dd-asg


text: Queen Mary University of London

text: EarlhamInstitute

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collecting institution

text: USA

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: marine laboratory culture

characteristic: habitat

text: GREG ROUSE

text: adult

characteristic: lifestage

text: Ophryotrocha siberti

text: MULTICELLULAR ORGANISMS IN CULTURE

text: ASG

characteristic: sample collection method

text: Ophryotrocha siberti

text: NOT COLLECTED

characteristic: sex

text: N

text: e3e7f903-d9e3-4916-9014-179aeebb6509-asg

characteristic: tolid

characteristic: voucher institution url


characteristic: ENA-CHECKLIST

text: Queen Mary University of London

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: NOT PROVIDED

text: COPO

text: GREG ROUSE | CHARLOTTE SEID

characteristic: collection date

characteristic: depth

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: marine laboratory culture

text: GREG ROUSE

text: adult

text: Ophryotrocha siberti

characteristic: organism

text: MULTICELLULAR ORGANISMS IN CULTURE

text: ASG

characteristic: sample derived from

text: Ophryotrocha siberti

text: NOT COLLECTED

text: N

characteristic: symbiont

text: 9cb6749c-23e8-45c8-ba57-72653add6f7e-asg

characteristic: title


E-MTAB-12822:Sample 1

characteristic: ENA first public

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12822:Sample 1

tag: Namespace:UNIVERSITY OF MANCHESTER

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: Protocols: First trimester fetal kidneys collected after maternal consent and ethical approval (ethics REC 08/H0906/21+5; and REC 18/NE/0290) and were provided by the MRC and Wellcome Trust Human Developmental Biology Resource (http://www.hdbr.org/). Total RNA was extracted using the miRVana miRNA isolation kit (Thermo Fisher, AM1560) without using the optional miRNA-enriching protocol Truseq stranded mRNA Assay. Paired end.

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: organoid

characteristic: growth condition

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 1


E-MTAB-12822:Sample 2

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12822:Sample 2

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens

text: male

characteristic: sex

text: Sample 2

characteristic: title


E-MTAB-12822:Sample 3

characteristic: ENA first public

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12822:Sample 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: normal

text: wild type genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-12822:Sample 4

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-12822:Sample 4

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: organoid

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: male

text: Sample 4


characteristic: ENA-CHECKLIST

text: ITQB NOVA

characteristic: INSDC center name

text: public

text: E-MTAB-13376:WaterDeficit_Innerbark_rep1

tag: Namespace:ITQB NOVA

unit: year

text: ArrayExpress

text: not collected

characteristic: collection date

text: Protocols: Xylem, inner bark (including phloem and cortex), and outer bark (phellem) layers were manually peeled from the first 10 cm segments of the main stem taken above root collar and frozen in liquid nitrogen. Phellem and inner bark layers were collected using the natural breaking regions occurring at the vascular cambium and phellogen, by quickly stripping the full bark layer. Debarked stems were immediately placed in liquid nitrogen and developing xylem was collected by scraping the wood with a scalpel blade. Plants were grown in a glasshouse, in 7 L pots containing a mixture of soil and sand (1:1); well watered plants were treated with 300ml water/day for 18 months; water deficit plants were treated with 300ml water/day for 12 months followed by water witholding for 1 month and 5 months with 300ml water/week. Frozen samples were ground with a mortar and pestle in liquid nitrogen and RNA extraction was performed according to (Reid et al., 2006; DOI:10.1186/1471-2229-6-27) with minor modifications described in (Leal et al., 2022; DOI:10.1093/treephys/tpab176) 1)mRNA enrichment and purification: Oligo dT Selection to enrich the mRNA; 2)RNA fragment and reverse transcription; 3)End repair, add A and adaptor ligation; 4)PCR;5)Single strand separation and cyclization; 6)DNA nanoball synthesis

text: plant tissue development stage

text: water deficit

characteristic: environmental stress

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Quercus suber

text: Quercus suber

text: Cork oak

characteristic: organism common name

text: inner bark

characteristic: organism part

characteristic: replicate

text: first 10 cm segment of the main stem

characteristic: sampling site

text: Quercus suber


characteristic: ENA first public

characteristic: External Id

text: ITQB NOVA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13376:WaterDeficit_Innerbark_rep2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

text: plant tissue development stage

text: water deficit

text: wild type genotype

text: not collected

text: not applicable

text: Quercus suber

characteristic: organism

text: Quercus suber

text: Cork oak

text: inner bark

text: first 10 cm segment of the main stem

text: Quercus suber

characteristic: title


characteristic: ENA-CHECKLIST

text: ITQB NOVA

characteristic: INSDC center name

text: public

text: E-MTAB-13376:WaterDeficit_Innerbark_rep3

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

characteristic: description

text: plant tissue development stage

characteristic: developmental stage

text: water deficit

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

text: Quercus suber

text: Quercus suber

text: Cork oak

text: inner bark

text: first 10 cm segment of the main stem

text: Quercus suber


text: ITQB NOVA

text: public

text: ArrayExpress

text: not collected

text: plant tissue development stage

text: water deficit

characteristic: environmental stress

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Quercus suber

text: Quercus suber

text: Cork oak

characteristic: organism common name

text: phellem

characteristic: organism part

characteristic: replicate

text: first 10 cm segment of the main stem

characteristic: sampling site

text: Quercus suber


characteristic: ENA first public

characteristic: External Id

text: ITQB NOVA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: not collected

text: plant tissue development stage

text: water deficit

text: wild type genotype

text: not collected

text: not applicable

text: Quercus suber

text: Quercus suber

text: Cork oak

text: xylem

text: first 10 cm segment of the main stem

text: Quercus suber


characteristic: ENA-CHECKLIST

text: ITQB NOVA

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

characteristic: description

text: plant tissue development stage

text: none (well watered)

text: wild type genotype

text: not collected

text: not applicable

text: Quercus suber

characteristic: organism

text: Quercus suber

text: Cork oak

text: inner bark

text: first 10 cm segment of the main stem

text: Quercus suber

characteristic: title


text: ITQB NOVA

text: public

text: ArrayExpress

text: not collected

text: plant tissue development stage

characteristic: developmental stage

text: none (well watered)

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Quercus suber

text: Quercus suber

text: Cork oak

characteristic: organism common name

text: phellem

characteristic: organism part

text: first 10 cm segment of the main stem

text: Quercus suber


characteristic: ENA first public

characteristic: External Id

text: ITQB NOVA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: plant tissue development stage

text: none (well watered)

text: wild type genotype

text: not collected

text: not applicable

text: Quercus suber

text: Quercus suber

text: Cork oak

text: xylem

characteristic: replicate

text: first 10 cm segment of the main stem

characteristic: sampling site

text: Quercus suber


characteristic: ENA-CHECKLIST

text: MDSC

characteristic: FACS

characteristic: INSDC center name

text: public

tag: Namespace:Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK University of Cambridge, Department of Haematology, Cambridge, CB2 0AW, UK Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute, Cambridge, CB2 0AW, UK

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: Tissues were kept in cold complete RPMI medium (RPMI [Invitrogen] supplemented with 10% FBS [Sigma Millipore], 2mM L-Glutamine [Life Technologies] and 100U/ml Penicillin-Streptomycin [Thermofisher]) until dissection, which was performed on the same day of collection. Single-cell suspensions were generated as previously described25. Briefly, tissues were placed into a petri dish and cutted into small pieces of 2-4 mm and transferred into a 1.5ml tube containing the digestion mix (complete RPMI media supplemented with  1 mg ml−1 collagenase IV and 0.1 mg ml−1 DNase I) and minced using surgical scissors. Minced tissues were incubated for 45 minutes at 37℃ and vortexed every 15 minutes. Digested tissues were passed through a 100 μm strain into a falcon tube prefilled with cold PBS. Cells were then centrifuged for 5 minutes at 300 g, 4°C and the pellet was resuspended into 1x RBC lysis buffer (eBioscience) for 2 minutes at room temperature, after which 20 ml of cold PBS were added to stop the lysis reaction. Cells were cryopreserved in 5% DMSO in KnockOut Serum Replacement (KOSR; GibcoTM) until further use. On the day of the experiment, cells were rapidly thawed at 37℃ and transferred to complete RPMI media. Live cell enrichment was performed using MACS Dead Cell Removal Kit (Miltenyi Biotec) following the manufacturer's instructions. Red blood cells were further depleted by negative selection using CD235a Microbeads (Miltenyi Biotec) and MACS LS columns (Miltenyi Biotec), following the manufacturer's instructions. For FACS sorting, cells were stained with Zombie Aqua to exclude dead cells and the cocktail of antibodies for 30 minutes at 4°C. Cells were centrifuged for 5 minutes at 300 g, 4°C, resuspended in 500 μl of 5% FBS in PBS and subsequently filtered into polypropylene FACS tubes. Immune cells were sorted as live, CD45+; MDSC were sorted as live, CD45+, Lineage- (Lin: CD3, CD56, CD19), CD11b+, CD33+;. e-MDSC were sorted as live, CD45+, Lin-, CD33+, HLA-DR-/low. Cells were sorted into a 1.5 ml tube, counted and submitted for 10x scRNA seq library preparation. Each cell suspension was submitted for 3’ single cell RNA sequencing using Single Cell G Chip Kit, chemistry v3.1 (10x Genomics Pleasanton, CA, USA), following the manufacturer’s instructions. Each cell suspension was submitted for 3’ single cell RNA sequencing using Single Cell G Chip Kit, chemistry v3.1 (10x Genomics Pleasanton, CA, USA), following the manufacturer’s instructions.

characteristic: description

text: adult

text: non-small cell lung cancer

characteristic: disease

text: not collected

text: Patient 1

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

text: MDSC

text: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK University of Cambridge, Department of Haematology, Cambridge, CB2 0AW, UK Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute, Cambridge, CB2 0AW, UK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: non-small cell lung cancer

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 1

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

text: MDSC

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 2

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: External Id

text: MDSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung squamous cell carcinoma

characteristic: disease

text: not collected

text: Patient 2

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

text: CD45+ + MDSC

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 3

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA first public

characteristic: External Id

text: CD45+ + MDSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 3

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: CD45+ + MDSC

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 5

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

text: CD45+ + MDSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 5

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: not collected

text: Donor 1

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: upper lobe

characteristic: sampling site

text: Homo sapiens

text: male

text: not applicable


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: normal

characteristic: disease

text: not collected

text: Donor 2

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: upper lobe

text: Homo sapiens

text: male

characteristic: sex

text: not applicable

characteristic: tumor grading


characteristic: ENA-CHECKLIST

text: MDSC

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: Donor 2

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: upper lobe

text: Homo sapiens

text: male

characteristic: title

text: not applicable


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: not collected

text: Donor 2

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: lower lobe

characteristic: sampling site

text: Homo sapiens

text: male

text: not applicable


characteristic: ENA-CHECKLIST

text: MDSC

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: normal

characteristic: disease

text: not collected

text: Donor 2

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: lower lobe

text: Homo sapiens

text: male

characteristic: sex

text: not applicable

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 6

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 6

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 13

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 13

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 14

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 14

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: non-small cell lung cancer

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 12

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 15

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 15

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 16

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 16

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung squamous cell carcinoma

characteristic: disease

text: not collected

text: Patient 4

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 4

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: non-small cell lung cancer

text: not collected

text: Patient 17

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: non-small cell lung cancer

characteristic: disease

text: not collected

text: Patient 17

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

text: CD45+ + MDSC

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 4

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: External Id

text: CD45+ + MDSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 4

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 10

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 10

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: non-small cell lung cancer

text: not collected

text: Patient 12

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 9

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 9

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 7

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 7

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

text: CD45+ + MDSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 8

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 11

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: External Id

text: CD45+ + MDSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung squamous cell carcinoma

characteristic: disease

text: not collected

text: Patient 8

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 11

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 18

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung squamous cell carcinoma

characteristic: disease

text: not collected

text: Patient 20

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 18

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 20

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung squamous cell carcinoma

characteristic: disease

text: not collected

text: Patient 19

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 19

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 24

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 24

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 22

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 8

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 22

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 8

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 21

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

text: not collected

text: Patient 21

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grading


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: non-small cell lung cancer

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 23

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: FACS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: non-small cell lung cancer

text: not collected

text: Patient 23

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: Protocols: Tissues were frozen in dry-ice cooled isopentane and stored in air-tight tissue cryovials at -80°C. Prior to undertaking any spatial transcriptomics protocol, the tissues were embedded in an optimal cutting temperature compound (OCT) and tested for RNA quality with RNA integrity number (RIN). Tissues with RIN values >7 were cryosectioned in a pre-cooled cryostat at 10 μm thickness. Two consecutive sections were cryosectioned at 10 μm thickness in a pre-cooled cryostat and transferred to the four 6.5mm x 6.5mm capture areas of the gene expression slide. Slides were fixed in methanol for 30 minutes prior to staining with H&E and then imaged using the Nanozoomer slide scanner. The tissues underwent permeabilization for 24 minutes. Reverse transcription and second strand synthesis was performed on the slide with cDNA quantification using qRT-PCR using KAPA SYBR FAST-qPCR kit (KAPA Biosystems) and analysed on the QuantStudio (ThermoFisher). Following library construction, these were quantified and pooled at 2.25 nM concentration. Reverse transcription and second strand synthesis was performed on the slide with cDNA quantification using qRT-PCR using KAPA SYBR FAST-qPCR kit (KAPA Biosystems) and analysed on the QuantStudio (ThermoFisher). Following library construction, these were quantified and pooled at 2.25 nM concentration.

text: adult

text: normal

characteristic: disease

text: not applicable

characteristic: disease staging

text: not collected

text: Donor 1

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: healthy tissue

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: normal

text: not applicable

text: not collected

characteristic: geographic location (country and/or sea)

text: Donor 2

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: healthy tissue

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 10

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

characteristic: disease staging

text: not collected

text: Patient 10

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA first public

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 11

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not collected

text: Patient 11

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

characteristic: disease staging

text: not collected

text: Patient 15

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 15

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 16

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

characteristic: disease staging

text: not collected

text: Patient 16

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA first public

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: non-small cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 17

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: non-small cell carcinoma

text: not collected

text: Patient 17

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung squamous cell carcinoma

characteristic: disease

characteristic: disease staging

text: not collected

text: Patient 19

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 19

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 24

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumor

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

text: adult

text: lung adenocarcinoma

characteristic: disease

characteristic: disease staging

text: not collected

text: Patient 24

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: original source name

text: tumor

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA first public

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

text: human

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: not collected

characteristic: geographic location (country and/or sea)

text: Patient 25

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumor

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: lung adenocarcinoma

text: not collected

text: Patient 25

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumor

characteristic: sampling site

text: Homo sapiens

text: male


Afasciculatus

characteristic: ENA first public

characteristic: External Id

text: WAGENINGEN UNIVERSITY

text: public

characteristic: INSDC status

text: FAIR Data Station

characteristic: Metadata submission software

text: Afasciculatus

tag: Namespace:WAGENINGEN UNIVERSITY

characteristic: Submitter Id

characteristic: biosafety level

text: Netherlands

text: Wageningen

characteristic: geographic location (region and locality)

text: Aetherobacter fasciculatus from Leibniz-Institut DSMZ, DSM 24601, NCCB 100377

characteristic: observation_unit description

text: Afasciculatus

characteristic: observation_unit identifier

text: Aetherobacter fasciculatus

characteristic: observation_unit name

text: Aetherobacter fasciculatus

text: default

characteristic: packageName

characteristic: sample description

text: Afasciculatus

characteristic: sample identifier

text: Aetherobacter fasciculatus

characteristic: sample name

text: Aetherobacter fasciculatus

text: Aetherobacter fasciculatus


Amuciniphila

characteristic: ENA-CHECKLIST

text: MRC Tox

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Amuciniphila

characteristic: collection date

text: Monoculture

text: Germany

characteristic: geographic location (country and/or sea)

text: synthetic metagenome

characteristic: organism

text: synthetic metagenome

text: Amuciniphila

characteristic: title


Aodontolyticus

characteristic: ENA first public

text: MRC Tox

text: public

characteristic: INSDC status

text: Aodontolyticus

characteristic: Submitter Id

text: Monoculture

characteristic: description

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Aodontolyticus


Aputredinis

text: MRC Tox

text: public

text: Aputredinis

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Aputredinis


Badolescentis

text: MRC Tox

text: public

text: Badolescentis

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Badolescentis


Bcrossotus

text: MRC Tox

text: public

text: Bcrossotus

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Bcrossotus


Bfragilis

text: MRC Tox

text: public

text: Bfragilis

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Bfragilis


Bhansenii

text: MRC Tox

text: public

text: Bhansenii

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Bhansenii


Binfantis

text: MRC Tox

text: public

text: Binfantis

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Binfantis


text: MRC Tox

text: public

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome


Blongum

text: MRC Tox

text: public

text: Blongum

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Blongum


Bthetaiotaomicron

text: MRC Tox

text: public

text: Bthetaiotaomicron

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Bthetaiotaomicron


Buniformis

text: MRC Tox

text: public

text: Buniformis

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Buniformis


Bvulgatus

text: MRC Tox

text: public

text: Bvulgatus

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Bvulgatus


Cbolteae

text: MRC Tox

text: public

text: Cbolteae

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Cbolteae


Ccomes

text: MRC Tox

text: public

text: Ccomes

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Ccomes


Cramosum

text: MRC Tox

text: public

text: Cramosum

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Cramosum


Csaccharolyticum

text: MRC Tox

text: public

text: Csaccharolyticum

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Csaccharolyticum


Elenta

text: MRC Tox

text: public

text: Elenta

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Elenta


Erectale

text: MRC Tox

text: public

text: Erectale

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Erectale


Esiraeum

text: MRC Tox

text: public

text: Esiraeum

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Esiraeum


Fnucleatum

text: MRC Tox

text: public

text: Fnucleatum

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Fnucleatum


Lgasseri

text: MRC Tox

text: public

text: Lgasseri

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Lgasseri


Llactis

text: MRC Tox

text: public

text: Llactis

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Llactis


Lparacasei

text: MRC Tox

text: public

text: Lparacasei

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Lparacasei


text: MRC Tox

text: public

text: Synthetic community

text: Germany

text: synthetic metagenome

text: synthetic metagenome


Pcapillosus

text: MRC Tox

text: public

text: Pcapillosus

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Pcapillosus


Pcopri

text: MRC Tox

text: public

text: Pcopri

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Pcopri


Pmelaninogenica

text: MRC Tox

text: public

text: Pmelaninogenica

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Pmelaninogenica


Rbromii

text: MRC Tox

text: public

text: Rbromii

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Rbromii


Rgnavus

text: MRC Tox

text: public

text: Rgnavus

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Rgnavus


Rintestinalis

text: MRC Tox

text: public

text: Rintestinalis

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Rintestinalis


Ssalivarius

text: MRC Tox

text: public

text: Ssalivarius

text: Monoculture

text: Germany

text: synthetic metagenome

text: synthetic metagenome

text: Ssalivarius


text: RADBOUD UNIVERSITY NIJMEGEN

text: public

text: Bin MG Vulcano Island

text: Italy

text: volcano metagenome

text: volcano metagenome


text: DSMZ

text: public

text: 16S rRNA amplicon sequences generated from 20ml bulk wholemilk (not quarter) taken from Holstein Firisan cows by an automated milking system

text: milk metagenome

text: milk metagenome

text: Illumina MiSeq 2x 300bp

characteristic: sequencing method

text: bovine milk microbiome


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

characteristic: common name

text: Child with diarrhea

text: Ethiopia

text: diseased

characteristic: host health state

text: Escherichia coli

characteristic: host scientific name

characteristic: isolate

text: Feces

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: Child with diarrhea

text: Ethiopia

text: diseased

text: Salmonella enterica

text: Feces

text: Salmonella enterica

text: Salmonella enterica


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Caretaker of child with diarrhea

text: Ethiopia

text: healthy

text: Escherichia coli

text: Feces

text: Escherichia coli

text: Escherichia coli

text: Caretaker


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Chicken feces

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Feces

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: Caretaker of child with diarrhea

text: Ethiopia

text: healthy

text: Salmonella enterica

text: Feces

text: Salmonella enterica

text: Salmonella enterica

text: Caretaker


text: Technical University of Denmark

text: public

text: Haramaya University

text: Chicken feces

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Feces

text: Salmonella enterica

text: Salmonella enterica


text: Technical University of Denmark

text: public

text: Haramaya University

text: Caretaker of child with diarrhea

text: Ethiopia

text: healthy

text: Shigella flexneri

text: Feces

text: Shigella flexneri

text: Shigella flexneri

text: Caretaker


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Non-dairy or non-meat product

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Mashed product

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Waste from unspecified animal

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Feces

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: Child with diarrhea

text: Ethiopia

text: diseased

text: Shigella flexneri

text: Feces

text: Shigella flexneri

text: Shigella flexneri


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Bovine meat

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Meat

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: Goat from market

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Feces

text: Salmonella enterica

text: Salmonella enterica

text: Goat


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Waste from unspecified human at market

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Feces

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Milk from cow

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Milk

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Feces from cattle/bovine

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Feces

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: Unspecified water source

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Water

text: Salmonella enterica

text: Salmonella enterica


text: Technical University of Denmark

text: public

text: Haramaya University

text: Bovine meat

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Meat

text: Salmonella enterica

text: Salmonella enterica


text: Technical University of Denmark

text: public

text: Haramaya University

text: Feces from cattle/bovine

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Feces

text: Salmonella enterica

text: Salmonella enterica


text: Technical University of Denmark

text: public

text: Haramaya University

text: Non-dairy or non-meat product

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Mashed product

text: Salmonella enterica

text: Salmonella enterica


text: Technical University of Denmark

text: public

text: Haramaya University

text: Waste from unspecified animal

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Feces

text: Salmonella enterica

text: Salmonella enterica


text: Technical University of Denmark

text: public

text: Haramaya University

text: Drinking water from abbatoir

text: Ethiopia

text: not applicable

text: Shigella flexneri

text: Water

text: Shigella flexneri

text: Shigella flexneri


text: Technical University of Denmark

text: public

text: Haramaya University

text: Bovine meat

text: Ethiopia

text: not applicable

text: Shigella flexneri

text: Meat

text: Shigella flexneri

text: Shigella flexneri


text: Technical University of Denmark

text: public

text: Haramaya University

text: E. coli

text: Waste water from unspecified abbatoir

text: Ethiopia

text: not applicable

text: Escherichia coli

text: Water

text: Escherichia coli

text: Escherichia coli


text: Technical University of Denmark

text: public

text: Haramaya University

text: Sheep/mutton meat

text: Ethiopia

text: not applicable

text: Salmonella enterica

text: Meat

text: Salmonella enterica

text: Salmonella enterica


text: IZSLER

text: public

text: Whole Genome sequencing (WGS) of Mycobacterium bovis spoligotype SB0120 and SB0841 isolates circulating in Italy

text: Italy

text: diseased

text: Bos Taurus

text: Mycobacterium tuberculosis variant bovis


text: IZSLER

text: public

text: Italy

text: diseased

text: Sus scrofa domesticus


text: IZSLER

text: public

text: Italy

text: diseased

text: Sus scrofa


text: Wellcome Sanger Institute

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: Protocols: The human embryonic samples were collected from medical abortions. The samples were stored in hibernate E medium (Thermo Fisher A1370601) and transported to the research lab for dissection. The whole limb bud or upper part of the lower limbs were then dissected are stored in ice-cold PBS before single-cell isolation. Samples were chopped into a mash using a scalpel and incubated in 5ml of 2.5mg/ml liberase at 37 degrees for 30-40 min till fully digestion. Cells were spun down at 4C 750 for 5min and resuspended in 3ml of 1X RBC lysis buffer (eBioscience 00-4333, or diluted from eBioscience 00-4300) followed by 4-5 min incubation at RT. 10ml of 1X PBS was then added. The cells were then spun down at 4C at 750 for 5min, resuspended in 5ml of 2% FBS in 1X PBS, filtered through a 40um strainer, spun down again iat 4C 750g for 5min, resuspended in 50-200ul of 2% FBS in PBS, and spun down again. Libraries were prepared according to the standard protocol of the Chromium single cell 3’ V2 kit

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: hindlimb

characteristic: organism part

text: hindlimb stylopod

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

text: embryo stage

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: hindlimb

text: Homo sapiens

text: male

characteristic: title


text: Wellcome Sanger Institute

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: not collected

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: hindlimb

text: Homo sapiens

text: female


text: Wellcome Sanger Institute

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: Protocols: The human embryonic samples were collected from medical abortions. The samples were stored in hibernate E medium (Thermo Fisher A1370601) and transported to the research lab for dissection. The whole limb bud or upper part of the lower limbs were then dissected are stored in ice-cold PBS before single-cell isolation. Samples were chopped into a mash using a scalpel and incubated in 5ml of 2.5mg/ml liberase at 37 degrees for 30-40 min till fully digestion. Cells were spun down at 4C 750 for 5min and resuspended in 3ml of 1X RBC lysis buffer (eBioscience 00-4333, or diluted from eBioscience 00-4300) followed by 4-5 min incubation at RT. 10ml of 1X PBS was then added. The cells were then spun down at 4C at 750 for 5min, resuspended in 5ml of 2% FBS in 1X PBS, filtered through a 40um strainer, spun down again iat 4C 750g for 5min, resuspended in 50-200ul of 2% FBS in PBS, and spun down again. Cells were loaded according to the standard protocol of the Chromium single cell 5' V1 kit

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: forelimb

text: Homo sapiens

text: male


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Wellcome Sanger Institute

text: public

text: ArrayExpress

text: not collected

text: human

text: embryo stage

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: hindlimb

characteristic: organism part

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex


text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

text: embryo stage

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: hindlimb

text: hindlimb stylopod

text: Homo sapiens

text: male


text: Wellcome Sanger Institute

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: human

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: forelimb

text: Homo sapiens

text: male

characteristic: title


text: CeMM

text: public

text: ena-SAMPLE-TAB-29-04-2024-10:40:56:462-77333

text: Jump-In T-REx HEK 293 (RRID:CVCL_YL74)

text: human

text: deep mutational scanning library, plasmid preparation

text: Germany

text: Homo sapiens

text: Homo sapiens

text: PLASMID PREPARATION


text: CeMM

text: public

text: ena-SAMPLE-TAB-29-04-2024-10:40:56:462-77334

text: Jump-In T-REx HEK 293 (RRID:CVCL_YL74)

text: human

text: deep mutational scanning library, amplified from HEK293-JI cells after R4 integration

text: Germany

text: Homo sapiens

text: Homo sapiens

text: AFTER R4 INTEGRATION


text: CeMM

text: public

text: ena-SAMPLE-TAB-29-04-2024-10:40:56:462-77335

text: Jump-In T-REx HEK 293 (RRID:CVCL_YL74)

text: human

text: deep mutational scanning library, amplified from HEK293-JI cells after R4 integration and FACS enrichment round 1

text: Germany

text: Homo sapiens

text: Homo sapiens

text: AFTER ROUND 1


text: CeMM

text: public

text: ena-SAMPLE-TAB-29-04-2024-10:40:56:462-77336

text: Jump-In T-REx HEK 293 (RRID:CVCL_YL74)

text: human

text: deep mutational scanning library, amplified from HEK293-JI cells after R4 integration and FACS enrichment round 2

text: Germany

text: Homo sapiens

text: Homo sapiens

text: AFTER ROUND 2


text: CeMM

text: public

text: ena-SAMPLE-TAB-29-04-2024-10:40:56:462-77337

text: Jump-In T-REx HEK 293 (RRID:CVCL_YL74)

text: human

text: deep mutational scanning library, amplified from HEK293-JI cells after R4 integration and FACS enrichment round 3

text: Germany

text: Homo sapiens

text: Homo sapiens

text: AFTER ROUND 3


text: CeMM

text: public

text: ena-SAMPLE-TAB-29-04-2024-10:40:56:463-77338

text: Jump-In T-REx HEK 293 (RRID:CVCL_YL74)

text: human

text: deep mutational scanning library, amplified from HEK293-JI cells after R4 integration and FACS enrichment round 4

text: Germany

text: Homo sapiens

text: Homo sapiens

text: AFTER ROUND 4


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: Western Cape

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae

characteristic: serovar

characteristic: strain


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Liverpool


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Kingabwa


characteristic: External Id

text: Croatian Institute of Publich Health

characteristic: INSDC last update

text: public

tag: Namespace:Croatian Institute of Publich Health

text: Croatian Institute of Public Health

characteristic: collecting institution

text: not provided

characteristic: collector name

text: SARS-COV 2 sequenced

text: Croatia

unit: years

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: nasopharynx swab

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


text: INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

characteristic: INSDC center name

characteristic: SRA accession

characteristic: Submitter Id

text: osteoblasts

characteristic: cell type

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: Poland

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone

characteristic: tissue type

text: d0 TENT5A KO osteoblasts direct RNA rep1 / S. cerevisiae WT BY4741 30°C, biological replicate 1

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: GBC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: thale cress

characteristic: estimated size

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: under 16 h light/8 h dark condition at 22℃.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: reproductive development stage

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: flower

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Arabidopsis thaliana

text: SWR1 and ERECTA in regulating female gametophyte