E-MTAB-13362:NC week 15 rep 1

characteristic: External Id

text: IMBUQ

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-13362:NC week 15 rep 1

text: ArrayExpress

text: not collected

text: house mouse

text: adult

text: Normal chow

text: normal

text: wild type genotype

text: not collected

text: NC week 15 rep 1

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: C57BL/6J Inbred

characteristic: strain

text: NC week 15 rep 1


E-MTAB-13362:NC week 15 rep 2

status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

text: IMBUQ

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13362:NC week 15 rep 2

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: Protocols: Hearts were minced and incubated in collagenase type II (Worthington) at 37oC before filtering through 40mm strainers. Cells were resuspended in red cell lysis buffer, followed by dead cell removal and two times wash with FACS buffer (2% FBS, 2mM EDTA in PBS, pH 7.4) before the acquisition. For CM nuclei extraction, strainers were washed with FACS buffer to collect CMs in a 50-ml Falcon tube. After 2 rounds of centrifugation (500g x 5 min), CM nuclei were isolated by swelling CMs in a hypotonic solution (91 mM NaCl, 5.3 mM KCl, 0.5 mM MgCl2, 0.293 mM CaCl2, 10 mM glucose, 10 mM HEPES at pH 7.4 and 0.05% Triton-X-100 supplemented with 40 U/ul RNasin® Ribonuclease Inhibitor (Promega Corporation)) before triturating cells using a 30-gauge hypodermic needle to mechanically fragment cells. Nuclei were then isolated by filtration through a 40 µm cell strainer to exclude large debris. Finally, nuclei suspension was centrifuged at (500g x 5 min) before staining with DAPI, followed by FACS for isolation of nuclei. FACS sorted live (DAPI-) TIP cells and CM nuclei were counted, and loaded on to the 10x Chromium microfluidics chip (3-prime v3.1). TIP and CM nuclei were FACS-sorted and subsequently pooled at specific proportions (50% TIP (without CD31+ cells), 20% CD31+ cells and 30% CM nuclei). Isolation of single cells was performed in two batches on separate days, with samples from each treatment group split across days to mitigate batch effects. Cells/nuclei from 2 mice were pooled together after FACS isolation and considered as one replicate and 2 replicates per condition were run for sequencing. FACS-sorted TIP cells and CM nuclei from each heart were manually counted using a hemocytometer and were mixed) and used for single cell transcriptomic library preparation on the Chromium controller (10X Genomics). Approximately 6000 total cells/nuclei (per condition) were loaded into each channel and processed using the Chromium Single Cell 3’ v3.1 reagent kit (10X Genomics). Following capture and lysis, we synthesized cDNA and amplified for 12 cycles as per manufacturer’s protocol (10X Genomics). The amplified cDNA was used to construct Illumina sequencing libraries that were each sequenced on one lane of an Illumina NovaSeq 6000 to an approximate depth of 30,000 reads per cell. Isolation of single cells was performed in two batches on separate days, with samples from each treatment group split across days to mitigate batch effects. 10x Chromium 3-prime v3.1 protocol 10x Chromium 3-prime v3.1 protocol

characteristic: description

text: adult

characteristic: developmental stage

text: Normal chow

characteristic: diet

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: NC week 15 rep 2

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: C57BL/6J Inbred

text: NC week 15 rep 2

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: 6730_HET_VAC_contig_11299_metaflye_circ MAG

tag: Namespace:The Roslin Institute (University of Edinburgh)

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138939

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Coprenecus stercorigallinarum

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: GTDB-Tk

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11916_metaflye_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

characteristic: description

text: Caecal contents

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Alphaproteobacteria bacterium

text: GTDB-Tk

characteristic: title


text: public

text: 6730_HET_VAC_s0.ctg000451l_hifiasm_large MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: uncultured Bacilli bacterium

text: GTDB-Tk


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s3.ctg000004l_hifiasm_large MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Atopobiaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Atopobiaceae bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s367.ctg000510c_hifiasm_circ MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Onthousia faecigallinarum

text: Candidatus Onthousia faecigallinarum

text: GTDB-Tk

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s86.ctg000137c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Atopobiaceae bacterium

characteristic: organism

text: uncultured Atopobiaceae bacterium

text: GTDB-Tk


text: public

text: 6732_HOM_VAC_contig_38_metaflye_large MAG

text: metaFlye

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138940

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Porphyromonadaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6732_HOM_VAC_s127.ctg000167c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Scatomonas sp.

text: Candidatus Scatomonas sp.

text: GTDB-Tk

characteristic: title


text: public

text: 6732_HOM_VAC_s129.ctg000173l_hifiasm_large MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Peptococcaceae bacterium

characteristic: organism

text: uncultured Peptococcaceae bacterium

text: GTDB-Tk


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6732_HOM_VAC_s92.ctg000117c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Collinsella tanakaei

characteristic: project name

characteristic: sample derived from

text: Collinsella tanakaei

text: GTDB-Tk

characteristic: taxonomic identity marker


text: public

text: 6732_HOM_VAC_s94.ctg000121c_hifiasm_circ MAG

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: GTDB-Tk

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s118.ctg000143c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921

text: Caecal contents

text: United Kingdom

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Olsenella sp. An293

characteristic: organism

text: Olsenella sp. An293

text: GTDB-Tk


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6737_HOM_CTRL_s164.ctg000202c_hifiasm_circ MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Coriobacteriaceae bacterium

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: uncultured Coriobacteriaceae bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s170.ctg000210c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Coprosoma intestinipullorum

text: Candidatus Coprosoma intestinipullorum

text: GTDB-Tk

characteristic: title


text: public

text: 6737_HOM_CTRL_s20.ctg000116l_hifiasm_large MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: organism

text: uncultured Eubacteriales bacterium

text: GTDB-Tk


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s20.ctg000294l_hifiasm_large MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Mordavella massiliensis

characteristic: project name

characteristic: sample derived from

text: Mordavella massiliensis

text: GTDB-Tk

characteristic: taxonomic identity marker


text: public

text: 6737_HOM_CTRL_s227.ctg000287c_hifiasm_circ MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: GTDB-Tk

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s26.ctg000031c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Barnesiella sp. An22

characteristic: organism

text: Barnesiella sp. An22

text: GTDB-Tk


text: public

text: 6737_HOM_CTRL_s263.ctg000347c_hifiasm_circ MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Limicola stercorigallinarum

characteristic: project name

characteristic: sample derived from

text: Candidatus Limicola stercorigallinarum

text: GTDB-Tk

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s274.ctg000360c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Megamonas hypermegale

text: Megamonas hypermegale

text: GTDB-Tk

characteristic: title


text: public

text: 6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Erysipelatoclostridium sp. An173

characteristic: organism

text: Erysipelatoclostridium sp. An173

text: GTDB-Tk


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s502.ctg000643c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Fimenecus excrementavium

characteristic: project name

characteristic: sample derived from

text: Candidatus Fimenecus excrementavium

text: GTDB-Tk

characteristic: taxonomic identity marker


text: public

text: 6737_HOM_CTRL_s7.ctg000008l_hifiasm_large MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Bacteroides sp.

text: uncultured Bacteroides sp.

text: GTDB-Tk

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s71.ctg000086c_hifiasm_circ MAG

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: GTDB-Tk


text: public

text: 6737_HOM_CTRL_s741.ctg000943l_hifiasm_large MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Gallibacteroides avistercoris

characteristic: project name

characteristic: sample derived from

text: GTDB-Tk

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_tig00017473_hicanu_large MAG

characteristic: Submitter Id

characteristic: assembly quality

text: HiCanu

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Bacilli bacterium

text: uncultured Bacilli bacterium

text: GTDB-Tk

characteristic: title


text: public

text: 6755_HET_CTRL_contig_16021_metaflye_large MAG

text: metaFlye

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Faecalibacterium sp.

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: uncultured Faecalibacterium sp.

text: GTDB-Tk


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_16071_metaflye_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Olsenella sp. An285

characteristic: project name

characteristic: sample derived from

text: Olsenella sp. An285

text: GTDB-Tk

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_contig_17144_metaflye_large MAG

text: metaFlye

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Megasphaera stantonii

text: Megasphaera stantonii

text: GTDB-Tk

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_17442_metaflye_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: uncultured Bacilli bacterium

text: GTDB-Tk


text: public

text: 6755_HET_CTRL_contig_2013_metaflye_large MAG

text: metaFlye

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Parabacteroides sp. An277

characteristic: project name

characteristic: sample derived from

text: Parabacteroides sp. An277

text: GTDB-Tk

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_469_metaflye_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Borkfalkia faecavium

text: Candidatus Borkfalkia faecavium

text: GTDB-Tk

characteristic: title


text: public

text: 6755_HET_CTRL_contig_661_metaflye_large MAG

text: metaFlye

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Prevotella sp. CAG:1058

characteristic: organism

text: Prevotella sp. CAG:1058

text: GTDB-Tk


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_977_metaflye_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Bacteroidales bacterium SW299

characteristic: project name

characteristic: sample derived from

text: Bacteroidales bacterium SW299

text: GTDB-Tk

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s226.ctg000285l_hifiasm_large MAG

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: GTDB-Tk

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s271.ctg000340c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Faecalibacterium intestinigallinarum

characteristic: organism

text: GTDB-Tk


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6755_HET_CTRL_s308.ctg000382l_hifiasm_large MAG

text: Hifiasm-meta

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Subdoligranulum sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Subdoligranulum sp.

text: GTDB-Tk

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s80.ctg000101c_hifiasm_circ MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Megamonas hypermegale

text: Megamonas hypermegale

text: GTDB-Tk

characteristic: title


text: public

text: 6755_HET_CTRL_tig00002018_hicanu_circ MAG

text: HiCanu

characteristic: assembly software

text: Not applicable

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Parasutterella secunda

characteristic: organism

text: Parasutterella secunda

text: GTDB-Tk


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_tig00013926_hicanu_large MAG

characteristic: Submitter Id

characteristic: assembly quality

text: HiCanu

text: Not applicable

text: Not applicable

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Gastranaerophilales bacterium

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: GTDB-Tk

characteristic: taxonomic identity marker


metabat2_6730_HET_VAC_hicanu.280 MAG

text: public

text: metabat2_6730_HET_VAC_hicanu.280 MAG

text: HiCanu

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138939

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: GTDB-Tk

text: metabat2_6730_HET_VAC_hicanu.280 MAG

characteristic: title


metabat2_6730_HET_VAC_hicanu.346 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6730_HET_VAC_hicanu.346 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: HiCanu

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Heritagella intestinalis

characteristic: organism

text: Candidatus Heritagella intestinalis

text: GTDB-Tk

text: metabat2_6730_HET_VAC_hicanu.346 MAG


metabat2_6730_HET_VAC_hicanu.398 MAG

text: public

text: metabat2_6730_HET_VAC_hicanu.398 MAG

text: HiCanu

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Scatomorpha merdipullorum

characteristic: project name

characteristic: sample derived from

text: Candidatus Scatomorpha merdipullorum

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6730_HET_VAC_hicanu.398 MAG


metabat2_6730_HET_VAC_hifiasm.289 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6730_HET_VAC_hifiasm.289 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Mediterraneibacter tabaqchaliae

text: GTDB-Tk

text: metabat2_6730_HET_VAC_hifiasm.289 MAG

characteristic: title


metabat2_6730_HET_VAC_hifiasm.293 MAG

text: public

text: metabat2_6730_HET_VAC_hifiasm.293 MAG

text: Hifiasm-meta

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Cloacibacillus sp.

characteristic: organism

text: uncultured Cloacibacillus sp.

text: GTDB-Tk

text: metabat2_6730_HET_VAC_hifiasm.293 MAG


metabat2_6730_HET_VAC_hifiasm.324 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6730_HET_VAC_hifiasm.324 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Bacteroides intestinavium

characteristic: project name

characteristic: sample derived from

text: Candidatus Bacteroides intestinavium

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6730_HET_VAC_hifiasm.324 MAG


metabat2_6730_HET_VAC_hybrid.107 MAG

text: public

text: metabat2_6730_HET_VAC_hybrid.107 MAG

text: metaSPAdes

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Bacteroides sp.

text: uncultured Bacteroides sp.

text: GTDB-Tk

text: metabat2_6730_HET_VAC_hybrid.107 MAG

characteristic: title


metabat2_6730_HET_VAC_hybrid.12 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6730_HET_VAC_hybrid.12 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: uncultured Oscillospiraceae bacterium

text: GTDB-Tk

text: metabat2_6730_HET_VAC_hybrid.12 MAG


metabat2_6730_HET_VAC_hybrid.7 MAG

text: public

text: metabat2_6730_HET_VAC_hybrid.7 MAG

text: metaSPAdes

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Escherichia coli

characteristic: project name

characteristic: sample derived from

text: Escherichia coli

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6730_HET_VAC_hybrid.7 MAG


metabat2_6730_HET_VAC_metaflye.321 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6730_HET_VAC_metaflye.321 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Saccharibacteria bacterium

text: Candidatus Saccharibacteria bacterium

text: GTDB-Tk

text: metabat2_6730_HET_VAC_metaflye.321 MAG

characteristic: title


metabat2_6730_HET_VAC_metaflye.493 MAG

text: public

text: metabat2_6730_HET_VAC_metaflye.493 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Muribaculum sp. An289

characteristic: organism

text: Muribaculum sp. An289

text: GTDB-Tk

text: metabat2_6730_HET_VAC_metaflye.493 MAG


metabat2_6732_HOM_VAC_hicanu.328 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6732_HOM_VAC_hicanu.328 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: HiCanu

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138940

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Faecalibacterium sp. UBA1819

characteristic: project name

characteristic: sample derived from

text: Faecalibacterium sp. UBA1819

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6732_HOM_VAC_hicanu.328 MAG


metabat2_6732_HOM_VAC_hifiasm.148 MAG

text: public

text: metabat2_6732_HOM_VAC_hifiasm.148 MAG

text: Hifiasm-meta

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Olsenella sp. An270

text: Olsenella sp. An270

text: GTDB-Tk

text: metabat2_6732_HOM_VAC_hifiasm.148 MAG

characteristic: title


metabat2_6732_HOM_VAC_hifiasm.161 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6732_HOM_VAC_hifiasm.161 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: uncultured Muribaculaceae bacterium

text: GTDB-Tk

text: metabat2_6732_HOM_VAC_hifiasm.161 MAG


metabat2_6732_HOM_VAC_hifiasm.170 MAG

text: public

text: metabat2_6732_HOM_VAC_hifiasm.170 MAG

text: Hifiasm-meta

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Scatomonas sp.

characteristic: project name

characteristic: sample derived from

text: Candidatus Scatomonas sp.

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6732_HOM_VAC_hifiasm.170 MAG


metabat2_6732_HOM_VAC_hybrid.128 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6732_HOM_VAC_hybrid.128 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Anaerobutyricum avicola

text: Candidatus Anaerobutyricum avicola

text: GTDB-Tk

text: metabat2_6732_HOM_VAC_hybrid.128 MAG

characteristic: title


metabat2_6732_HOM_VAC_hybrid.196 MAG

text: public

text: metabat2_6732_HOM_VAC_hybrid.196 MAG

text: metaSPAdes

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: organism

text: uncultured Eubacteriales bacterium

text: GTDB-Tk

text: metabat2_6732_HOM_VAC_hybrid.196 MAG


metabat2_6732_HOM_VAC_hybrid.40 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6732_HOM_VAC_hybrid.40 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6732_HOM_VAC_hybrid.40 MAG


metabat2_6737_HOM_CTRL_hicanu.147 MAG

text: public

text: metabat2_6737_HOM_CTRL_hicanu.147 MAG

text: HiCanu

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Lachnospiraceae bacterium

text: uncultured Lachnospiraceae bacterium

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_hicanu.147 MAG

characteristic: title


metabat2_6737_HOM_CTRL_hicanu.191 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_hicanu.191 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: HiCanu

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_hicanu.191 MAG


metabat2_6737_HOM_CTRL_hicanu.200 MAG

text: public

text: metabat2_6737_HOM_CTRL_hicanu.200 MAG

text: HiCanu

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Bacilli bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6737_HOM_CTRL_hicanu.200 MAG


metabat2_6737_HOM_CTRL_hifiasm.274 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_hifiasm.274 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Mediterraneibacter gallistercoris

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_hifiasm.274 MAG

characteristic: title


metabat2_6737_HOM_CTRL_hifiasm.628 MAG

text: public

text: metabat2_6737_HOM_CTRL_hifiasm.628 MAG

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Barnesiella viscericola

characteristic: organism

text: Barnesiella viscericola

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_hifiasm.628 MAG


metabat2_6737_HOM_CTRL_hifiasm.752 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_hifiasm.752 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Limivicinus faecipullorum

characteristic: project name

characteristic: sample derived from

text: Candidatus Limivicinus faecipullorum

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6737_HOM_CTRL_hifiasm.752 MAG


metabat2_6737_HOM_CTRL_hybrid.22 MAG

text: public

text: metabat2_6737_HOM_CTRL_hybrid.22 MAG

text: metaSPAdes

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Alloprevotella sp.

text: uncultured Alloprevotella sp.

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_hybrid.22 MAG

characteristic: title


metabat2_6737_HOM_CTRL_hybrid.262 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_hybrid.262 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Clostridiales bacterium CHKCI006

characteristic: organism

text: Clostridiales bacterium CHKCI006

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_hybrid.262 MAG


metabat2_6737_HOM_CTRL_hybrid.61 MAG

text: public

text: metabat2_6737_HOM_CTRL_hybrid.61 MAG

text: metaSPAdes

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Methanobrevibacter woesei

characteristic: project name

characteristic: sample derived from

text: Methanobrevibacter woesei

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6737_HOM_CTRL_hybrid.61 MAG


metabat2_6737_HOM_CTRL_metaflye.277 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_metaflye.277 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Bacillota bacterium

text: Bacillota bacterium

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_metaflye.277 MAG

characteristic: title


metabat2_6737_HOM_CTRL_metaflye.500 MAG

text: public

text: metabat2_6737_HOM_CTRL_metaflye.500 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Blautia stercoripullorum

characteristic: organism

text: Candidatus Blautia stercoripullorum

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_metaflye.500 MAG


metabat2_6737_HOM_CTRL_metaflye.52 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_metaflye.52 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Faecalibacterium gallistercoris

characteristic: project name

characteristic: sample derived from

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6737_HOM_CTRL_metaflye.52 MAG


metabat2_6737_HOM_CTRL_metaflye.535 MAG

text: public

text: metabat2_6737_HOM_CTRL_metaflye.535 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Mollicutes bacterium

text: uncultured Mollicutes bacterium

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_metaflye.535 MAG

characteristic: title


metabat2_6737_HOM_CTRL_metaflye.550 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_metaflye.550 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: organism

text: uncultured Alistipes sp.

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_metaflye.550 MAG


metabat2_6737_HOM_CTRL_metaflye.656 MAG

text: public

text: metabat2_6737_HOM_CTRL_metaflye.656 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Ruminococcus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Ruminococcus sp.

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6737_HOM_CTRL_metaflye.656 MAG


metabat2_6737_HOM_CTRL_metaflye.658 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_metaflye.658 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Merdimonas sp.

text: uncultured Merdimonas sp.

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_metaflye.658 MAG

characteristic: title


metabat2_6737_HOM_CTRL_metaflye.768 MAG

text: public

text: metabat2_6737_HOM_CTRL_metaflye.768 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Massilistercora timonensis

characteristic: organism

text: Massilistercora timonensis

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_metaflye.768 MAG


metabat2_6737_HOM_CTRL_metaflye.816 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6737_HOM_CTRL_metaflye.816 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6737_HOM_CTRL_metaflye.816 MAG


metabat2_6737_HOM_CTRL_metaflye.82 MAG

text: public

text: metabat2_6737_HOM_CTRL_metaflye.82 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: GTDB-Tk

text: metabat2_6737_HOM_CTRL_metaflye.82 MAG

characteristic: title


metabat2_6755_HET_CTRL_hicanu.134 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_hicanu.134 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: HiCanu

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: uncultured Bacilli bacterium

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hicanu.134 MAG


metabat2_6755_HET_CTRL_hicanu.336 MAG

text: public

text: metabat2_6755_HET_CTRL_hicanu.336 MAG

text: HiCanu

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Scatomorpha stercorigallinarum

characteristic: project name

characteristic: sample derived from

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6755_HET_CTRL_hicanu.336 MAG


metabat2_6755_HET_CTRL_hicanu.359 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_hicanu.359 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: HiCanu

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Lachnoclostridium sp. An118

text: Lachnoclostridium sp. An118

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hicanu.359 MAG

characteristic: title


metabat2_6755_HET_CTRL_hicanu.547 MAG

text: public

text: metabat2_6755_HET_CTRL_hicanu.547 MAG

text: HiCanu

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Atopobiaceae bacterium

characteristic: organism

text: uncultured Atopobiaceae bacterium

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hicanu.547 MAG


metabat2_6755_HET_CTRL_hifiasm.247 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_hifiasm.247 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Mediterraneibacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Mediterraneibacter sp.

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6755_HET_CTRL_hifiasm.247 MAG


metabat2_6755_HET_CTRL_hifiasm.331 MAG

text: public

text: metabat2_6755_HET_CTRL_hifiasm.331 MAG

text: Hifiasm-meta

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Bifidobacterium pullorum

text: Bifidobacterium pullorum

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hifiasm.331 MAG

characteristic: title


metabat2_6755_HET_CTRL_hifiasm.367 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_hifiasm.367 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Blautia pullistercoris

characteristic: organism

text: Candidatus Blautia pullistercoris

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hifiasm.367 MAG


metabat2_6755_HET_CTRL_hifiasm.376 MAG

text: public

text: metabat2_6755_HET_CTRL_hifiasm.376 MAG

text: Hifiasm-meta

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Faecalibacterium faecigallinarum

characteristic: project name

characteristic: sample derived from

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6755_HET_CTRL_hifiasm.376 MAG


metabat2_6755_HET_CTRL_hifiasm.396 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_hifiasm.396 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: Hifiasm-meta

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Blautia stercorigallinarum

text: Candidatus Blautia stercorigallinarum

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hifiasm.396 MAG

characteristic: title


metabat2_6755_HET_CTRL_hybrid.175 MAG

text: public

text: metabat2_6755_HET_CTRL_hybrid.175 MAG

text: metaSPAdes

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Anaerostipes butyraticus

characteristic: organism

text: Anaerostipes butyraticus

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hybrid.175 MAG


metabat2_6755_HET_CTRL_hybrid.208 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_hybrid.208 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Bacilli bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6755_HET_CTRL_hybrid.208 MAG


metabat2_6755_HET_CTRL_hybrid.286 MAG

text: public

text: metabat2_6755_HET_CTRL_hybrid.286 MAG

text: metaSPAdes

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Bacteroides intestinipullorum

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_hybrid.286 MAG

characteristic: title


metabat2_6755_HET_CTRL_metaflye.158 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_metaflye.158 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Caecibacteroides pullorum

characteristic: organism

text: Caecibacteroides pullorum

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_metaflye.158 MAG


metabat2_6755_HET_CTRL_metaflye.324 MAG

text: public

text: metabat2_6755_HET_CTRL_metaflye.324 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Neglectibacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Neglectibacter sp.

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6755_HET_CTRL_metaflye.324 MAG


metabat2_6755_HET_CTRL_metaflye.41 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_metaflye.41 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Limadaptatus stercoripullorum

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_metaflye.41 MAG

characteristic: title


metabat2_6755_HET_CTRL_metaflye.421 MAG

text: public

text: metabat2_6755_HET_CTRL_metaflye.421 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Blautia merdipullorum

characteristic: organism

text: Candidatus Blautia merdipullorum

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_metaflye.421 MAG


metabat2_6755_HET_CTRL_metaflye.524 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_metaflye.524 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Lactobacillus crispatus

characteristic: project name

characteristic: sample derived from

text: Lactobacillus crispatus

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_6755_HET_CTRL_metaflye.524 MAG


metabat2_6755_HET_CTRL_metaflye.59 MAG

text: public

text: metabat2_6755_HET_CTRL_metaflye.59 MAG

text: metaFlye

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Mediterraneibacter guildfordensis

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_metaflye.59 MAG

characteristic: title


metabat2_6755_HET_CTRL_metaflye.735 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_6755_HET_CTRL_metaflye.735 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: metaFlye

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Merdibacter merdigallinarum

characteristic: organism

text: Candidatus Merdibacter merdigallinarum

text: GTDB-Tk

text: metabat2_6755_HET_CTRL_metaflye.735 MAG


metabat2_coassembly_bwa.113 MAG

text: public

text: metabat2_coassembly_bwa.113 MAG

text: MEGAHIT

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921, ERS16138922, ERS16138923, ERS16138924, ERS16138925, ERS16138926, ERS16138927, ERS16138928, ERS16138929, ERS16138930, ERS16138931, ERS16138932, ERS16138933, ERS16138934, ERS16138935, ERS16138936, ERS16138937, ERS16138938, ERS16138939, ERS16138940, ERS16138941, ERS16138942, ERS16138943, ERS16138944

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_coassembly_bwa.113 MAG


metabat2_coassembly_bwa.12 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_coassembly_bwa.12 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Clostridia bacterium

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: ERS16138921, ERS16138922, ERS16138923, ERS16138924, ERS16138925, ERS16138926, ERS16138927, ERS16138928, ERS16138929, ERS16138930, ERS16138931, ERS16138932, ERS16138933, ERS16138934, ERS16138935, ERS16138936, ERS16138937, ERS16138938, ERS16138939, ERS16138940, ERS16138941, ERS16138942, ERS16138943, ERS16138944

text: Clostridia bacterium

text: GTDB-Tk

text: metabat2_coassembly_bwa.12 MAG

characteristic: title


metabat2_coassembly_bwa.122 MAG

text: public

text: metabat2_coassembly_bwa.122 MAG

text: MEGAHIT

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroides sp.

characteristic: organism

text: uncultured Bacteroides sp.

text: GTDB-Tk

text: metabat2_coassembly_bwa.122 MAG


metabat2_coassembly_bwa.123 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_coassembly_bwa.123 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Ruminococcus sp. UBA1409

characteristic: project name

characteristic: sample derived from

text: Ruminococcus sp. UBA1409

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_coassembly_bwa.123 MAG


metabat2_coassembly_bwa.128 MAG

text: public

text: metabat2_coassembly_bwa.128 MAG

text: MEGAHIT

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: GTDB-Tk

text: metabat2_coassembly_bwa.128 MAG

characteristic: title


metabat2_coassembly_bwa.129 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_coassembly_bwa.129 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Butyrivibrio sp.

characteristic: organism

text: uncultured Butyrivibrio sp.

text: GTDB-Tk

text: metabat2_coassembly_bwa.129 MAG


metabat2_coassembly_bwa.136 MAG

text: public

text: metabat2_coassembly_bwa.136 MAG

text: MEGAHIT

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: Candidatus Blautia faecavium

characteristic: project name

characteristic: sample derived from

text: Candidatus Blautia faecavium

text: GTDB-Tk

characteristic: taxonomic identity marker

text: metabat2_coassembly_bwa.136 MAG


metabat2_coassembly_bwa.14 MAG

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metabat2_coassembly_bwa.14 MAG

characteristic: Submitter Id

characteristic: assembly quality

text: MEGAHIT

text: Default MetaBAT 2 parameters

text: MetaBAT 2

text: Gallus gallus

characteristic: collection date

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

text: uncultured Lachnospiraceae bacterium

text: uncultured Lachnospiraceae bacterium

text: GTDB-Tk

text: metabat2_coassembly_bwa.14 MAG

characteristic: title


metabat2_coassembly_bwa.141 MAG

text: public

text: metabat2_coassembly_bwa.141 MAG

text: MEGAHIT

characteristic: assembly software

text: Default MetaBAT 2 parameters

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Clostridiales bacterium

characteristic: organism

text: Clostridiales bacterium

text: GTDB-Tk

text: metabat2_coassembly_bwa.141 MAG