characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_s751.ctg000957c_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: sequencing method


status: PUBLIC

tag: attribute

text: public

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tag: Namespace:The Roslin Institute (University of Edinburgh)

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138921

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

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characteristic: organism

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text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

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characteristic: sequencing method


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characteristic: assembly quality

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text: Not applicable

characteristic: binning software

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characteristic: collection date

characteristic: completeness score

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text: United Kingdom

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characteristic: investigation type

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text: Not applicable

text: Gallus gallus

characteristic: description

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characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

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characteristic: title


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characteristic: assembly quality

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text: Not applicable

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characteristic: description

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characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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characteristic: local environmental context

text: chicken gut metagenome

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characteristic: collection date

characteristic: completeness score

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text: United Kingdom

text: metagenome

characteristic: investigation type

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characteristic: metagenomic source

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text: Gallus gallus

characteristic: description

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characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

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characteristic: sequencing method


text: public

text: 6737_HOM_CTRL_s88.ctg000109l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

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characteristic: completeness score

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text: Hifiasm-meta

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text: Gallus gallus

characteristic: description

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characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


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text: 6737_HOM_CTRL_s96.ctg000118c_hifiasm_large

characteristic: assembly quality

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text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

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text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


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characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: 6737_HOM_CTRL_s969.ctg001215l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

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characteristic: taxonomic identity marker


text: public

text: 6737_HOM_CTRL_s972.ctg001218l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

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text: Not applicable

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text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

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characteristic: investigation type

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characteristic: metagenomic source

text: metagenome

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text: metagenome

text: Sequel IIe

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text: public

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characteristic: SRA accession

text: 6737_HOM_CTRL_s974.ctg001220l_hifiasm_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6737_HOM_CTRL_s137.ctg000167l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

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text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138921

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

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text: Not applicable

text: Gallus gallus

characteristic: description

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characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

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characteristic: title


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characteristic: assembly quality

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text: Not applicable

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characteristic: collection date

characteristic: completeness score

characteristic: completeness software

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text: United Kingdom

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characteristic: investigation type

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text: public

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text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

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characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


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characteristic: assembly quality

text: Hifiasm-meta

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characteristic: binning parameters

text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

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text: United Kingdom

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characteristic: investigation type

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: Not applicable

text: Gallus gallus

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characteristic: environmental medium

text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

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characteristic: sequencing method


text: public

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characteristic: assembly quality

text: Hifiasm-meta

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text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

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text: public

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text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

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text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

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characteristic: title


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characteristic: assembly quality

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characteristic: binning parameters

text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

characteristic: completeness software

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characteristic: investigation type

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text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

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text: hifiasm_meta -oasm

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characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6737_HOM_CTRL_NODE_10_length_648372_cov_11.115303_hybrid_large

characteristic: assembly quality

text: metaSPAdes

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text: Not applicable

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text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

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text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

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characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_11_length_639522_cov_9.474109_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6737_HOM_CTRL_NODE_12_length_607500_cov_89.937249_hybrid_large

characteristic: assembly quality

text: metaSPAdes

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text: spades.py --meta

characteristic: binning parameters

text: Not applicable

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text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

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characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


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characteristic: ENA-CHECKLIST

characteristic: External Id

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_13_length_579113_cov_8.686745_hybrid_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

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characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

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text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138921

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

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characteristic: sequencing method


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characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_15_length_558817_cov_31.809298_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6737_HOM_CTRL_NODE_16_length_555917_cov_27.060378_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: 6737_HOM_CTRL_NODE_17_length_549248_cov_75.334589_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6737_HOM_CTRL_NODE_18_length_543732_cov_19.881974_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

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text: public

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characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_19_length_538406_cov_13.295447_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6737_HOM_CTRL_NODE_1_length_1381503_cov_32.253349_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_20_length_531193_cov_70.314493_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6737_HOM_CTRL_NODE_21_length_518794_cov_29.064543_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_2_length_907152_cov_21.322754_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6737_HOM_CTRL_NODE_3_length_877418_cov_7.168702_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_4_length_854110_cov_27.261326_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6737_HOM_CTRL_NODE_5_length_826538_cov_27.886539_hybrid_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_6_length_769910_cov_29.170605_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138921

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6737_HOM_CTRL_NODE_7_length_683983_cov_16.473544_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: title


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characteristic: ENA-CHECKLIST

characteristic: External Id

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6737_HOM_CTRL_NODE_8_length_676283_cov_58.037875_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6737_HOM_CTRL_NODE_9_length_674863_cov_20.293083_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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text: metaSPAdes

text: spades.py --meta

text: MetaBAT 2

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_contig_10128_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


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characteristic: ENA-CHECKLIST

characteristic: External Id

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_10298_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

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text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

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characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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text: metagenome

characteristic: organism

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text: public

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characteristic: SRA accession

text: 6755_HET_CTRL_contig_11961_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


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characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_12139_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


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text: 6755_HET_CTRL_contig_12319_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_13355_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_contig_13724_metaflye_circ

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: title


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

text: 6755_HET_CTRL_contig_13841_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6755_HET_CTRL_contig_13842_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_14188_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_contig_14405_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_15178_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_contig_16047_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: title


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_16071_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_contig_16087_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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text: metagenome

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text: metagenome

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text: 6755_HET_CTRL_contig_16219_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

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text: chicken gut metagenome

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characteristic: assembly quality

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characteristic: broad-scale environmental context

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text: Caecal contents

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text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

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text: chicken gut metagenome

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characteristic: assembly quality

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characteristic: collection date

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text: Caecal contents

text: United Kingdom

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characteristic: metagenomic source

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text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

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text: United Kingdom

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characteristic: assembly quality

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text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

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text: United Kingdom

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text: Gastrointestinal tract microbiota

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text: Not applicable

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characteristic: description

text: Caecal contents

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text: United Kingdom

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text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

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text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

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text: Caecal contents

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characteristic: Submitter Id

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text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

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text: United Kingdom

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text: Not applicable

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text: United Kingdom

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text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

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text: Caecal contents

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text: United Kingdom

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text: metagenome

text: Gastrointestinal tract microbiota

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text: Caecal contents

text: United Kingdom

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text: Gastrointestinal tract microbiota

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text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

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text: Caecal contents

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text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

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text: flye --meta --pacbio-hifi

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text: The Roslin Institute (University of Edinburgh)

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text: Not applicable

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text: United Kingdom

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text: Gastrointestinal tract microbiota

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text: flye --meta --pacbio-hifi

text: Not applicable

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text: Caecal contents

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text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

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characteristic: assembly quality

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text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

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text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

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characteristic: metagenomic source

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text: Sequel IIe

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text: 6755_HET_CTRL_contig_17210_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

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text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

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text: Sequel IIe

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text: flye --meta --pacbio-hifi

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text: Not applicable

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text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

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text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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text: 6755_HET_CTRL_contig_17249_metaflye_circ

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text: flye --meta --pacbio-hifi

text: Not applicable

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text: Caecal contents

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text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

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characteristic: assembly quality

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text: Not applicable

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text: Gallus gallus

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text: Caecal contents

text: United Kingdom

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text: metagenome

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text: public

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text: 6755_HET_CTRL_contig_17352_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

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characteristic: taxonomic identity marker


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text: 6755_HET_CTRL_contig_17395_metaflye_circ

characteristic: assembly quality

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text: flye --meta --pacbio-hifi

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text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

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text: Caecal contents

text: United Kingdom

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characteristic: investigation type

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text: metagenome

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text: Sequel IIe

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text: public

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text: 6755_HET_CTRL_contig_17438_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


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text: 6755_HET_CTRL_contig_17442_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

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characteristic: External Id

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text: public

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characteristic: SRA accession

text: 6755_HET_CTRL_contig_17453_metaflye_circ

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6755_HET_CTRL_contig_17457_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

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characteristic: investigation type

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text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_17466_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_contig_17480_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_17488_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_contig_17603_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_17606_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_contig_17612_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_17624_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_contig_17648_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_17658_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_contig_17669_metaflye_circ

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_17692_metaflye_circ

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_contig_17701_metaflye_circ

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method