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text: public

characteristic: INSDC status

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text: 6755_HET_CTRL_contig_3582_metaflye_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


status: PUBLIC

tag: attribute

text: public

tag: Namespace:The Roslin Institute (University of Edinburgh)

characteristic: assembly quality

text: metaFlye

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text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

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text: United Kingdom

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characteristic: assembly quality

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characteristic: Submitter Id

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text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

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text: United Kingdom

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characteristic: assembly quality

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text: United Kingdom

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characteristic: assembly quality

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text: United Kingdom

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characteristic: assembly quality

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text: Gastrointestinal tract microbiota

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characteristic: assembly quality

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characteristic: assembly quality

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characteristic: Submitter Id

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text: United Kingdom

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

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text: Sequel IIe

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characteristic: assembly quality

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text: Caecal contents

text: United Kingdom

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characteristic: Submitter Id

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text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

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text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

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characteristic: completeness score

characteristic: completeness software

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characteristic: Submitter Id

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text: Not applicable

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text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

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text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

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characteristic: assembly quality

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text: Caecal contents

text: United Kingdom

text: metagenome

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text: public

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text: 6755_HET_CTRL_contig_7036_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

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characteristic: assembly quality

text: metaFlye

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characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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characteristic: taxonomic identity marker


characteristic: ENA first public

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characteristic: External Id

characteristic: INSDC center name

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characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

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characteristic: assembly quality

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characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

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characteristic: sequencing method


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text: 6755_HET_CTRL_contig_7254_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

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characteristic: taxonomic identity marker


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characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

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characteristic: External Id

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_7527_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_contig_7921_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

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characteristic: taxonomic identity marker


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


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characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_8662_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_contig_9164_metaflye_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_contig_9189_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: The Roslin Institute (University of Edinburgh)

text: public

characteristic: assembly quality

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characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: MetaBAT 2

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: HiCanu

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s10091.ctg010780c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s1013.ctg001198c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s10580.ctg011323c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s108.ctg000137c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s109.ctg000139c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s1112.ctg001312c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


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characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s1115.ctg001317c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s12169.ctg013073c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s12449.ctg013408c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s128.ctg000162c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s1286.ctg001505c_hifiasm_circ

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s129.ctg000163c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s130.ctg000164c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s137.ctg000173c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s15.ctg000020c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s156.ctg000200c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s1592.ctg001843c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s169.ctg000214c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s1726.ctg001987c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s175.ctg000222c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s180.ctg000229c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s187.ctg000240c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s1880.ctg002151c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s189.ctg000243c_hifiasm_circ

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s1971.ctg002248c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6755_HET_CTRL_s1975.ctg002253c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s1981.ctg002260c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s2.ctg000003c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s202.ctg000258c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s205.ctg000262c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s207.ctg000264c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s2097.ctg002383c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s2134.ctg002422c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s214.ctg000272c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s2235.ctg002533c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s237.ctg000300c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s241.ctg000306c_hifiasm_circ

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s268.ctg000337c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s2685.ctg003010c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s271.ctg000340c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s2740.ctg003066c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s2749.ctg003076c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s2790.ctg003119c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s2798.ctg003127c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s2807.ctg003138c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s2894.ctg003227c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s30.ctg000039c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s3049.ctg003387c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s310.ctg000384c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s3119.ctg003459c_hifiasm_circ

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s3292.ctg003644c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6755_HET_CTRL_s3322.ctg003675c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s3429.ctg003787c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s3450.ctg003810c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s35.ctg000045c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6755_HET_CTRL_s350.ctg000437c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s367.ctg000456c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6755_HET_CTRL_s376.ctg000466c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s38.ctg000048c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6755_HET_CTRL_s3831.ctg004204c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6755_HET_CTRL_s3913.ctg004288c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker