status: PUBLIC

text: Burkholderia cenocepacia

tag: attribute

characteristic: ArrayExpress-SPECIES

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Burkholderia cenocepacia

characteristic: common name

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

characteristic: title


E-MTAB-11749:Sample 1

text: public

text: E-MTAB-11749:Sample 1

tag: Namespace:Division of Life Science, The Hong Kong University of Science and Technology

text: ArrayExpress

characteristic: broker name

text: trophoblast cell

text: human

text: Protocols: Human trophoblast stem cells (hTSCs) were a gift from Prof. Pengtao Liu, School of Biomedical Sciences, the University of Hong Kong. TSC was cultured in TSC medium, 37C, 5% CO2 and maintained as previously described (PMID: 31160711). QIAseq Stranded Total RNA Library Kits

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: placenta

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-11749:Sample 2

characteristic: ENA first public

text: Division of Life Science, The Hong Kong University of Science and Technology

text: public

text: E-MTAB-11749:Sample 2

text: ArrayExpress

text: trophoblast cell

text: human

text: Protocols: Human trophoblast stem cells (hTSCs) were a gift from Prof. Pengtao Liu, School of Biomedical Sciences, the University of Hong Kong. TSC was cultured in TSC medium, 37C, 5% CO2 and maintained as previously described (PMID: 31160711). micro-ChIP-seq

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens

text: Sample 2


E-MTAB-11749:Sample 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11749:Sample 3

text: ArrayExpress

text: trophoblast cell

text: human

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens

text: Sample 3


E-MTAB-11749:Sample 4

characteristic: External Id

text: public

text: E-MTAB-11749:Sample 4

text: ArrayExpress

text: trophoblast cell

text: human

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens

text: Sample 4


E-MTAB-11749:Sample 5

characteristic: INSDC center name

text: public

text: E-MTAB-11749:Sample 5

text: ArrayExpress

text: trophoblast cell

text: human

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens

text: Sample 5


E-MTAB-11749:Sample 6

characteristic: INSDC last update

text: public

text: E-MTAB-11749:Sample 6

text: ArrayExpress

text: trophoblast cell

text: human

text: Protocols: Human trophoblast stem cells (hTSCs) were a gift from Prof. Pengtao Liu, School of Biomedical Sciences, the University of Hong Kong. TSC was cultured in TSC medium, 37C, 5% CO2 and maintained as previously described (PMID: 31160711). Arima HiC kit

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens

text: Sample 6


XCR1 KO HOM 6737

text: public

characteristic: INSDC status

text: XCR1 KO HOM 6737

tag: Namespace:The Roslin Institute (University of Edinburgh)

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HOM 6737 a XCR1 homozygous knockout, not vaccinated against IBV

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome

text: XCR1 KO HOM 6737


XCR1 KO HOM 6739

text: The Roslin Institute (University of Edinburgh)

text: public

characteristic: SRA accession

text: XCR1 KO HOM 6739

characteristic: Submitter Id

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HOM 6739 a XCR1 homozygous knockout, not vaccinated against IBV

characteristic: description

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

characteristic: organism

text: metagenome

text: XCR1 KO HOM 6739

characteristic: title


XCR1 KO HOM 6740

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: XCR1 KO HOM 6740

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HOM 6740 a XCR1 homozygous knockout, not vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HOM 6740


XCR1 KO HET 6747

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: XCR1 KO HET 6747

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HET 6747 a XCR1 heterozygous knockout, not vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 6747


XCR1 KO HET 6748

text: public

text: XCR1 KO HET 6748

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HET 6748 a XCR1 heterozygous knockout, not vaccinated against IBV

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 6748


XCR1 KO HET 6753

text: public

text: XCR1 KO HET 6753

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HET 6753 a XCR1 heterozygous knockout, not vaccinated against IBV

text: Caecal contents

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 6753


XCR1 KO HET 6755

text: public

characteristic: SRA accession

text: XCR1 KO HET 6755

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HET 6755 a XCR1 heterozygous knockout, not vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome

text: XCR1 KO HET 6755


XCR1 KO HOM 6756

text: public

text: XCR1 KO HOM 6756

characteristic: Submitter Id

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HOM 6756 a XCR1 homozygous knockout, not vaccinated against IBV

characteristic: description

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

characteristic: organism

text: metagenome

text: XCR1 KO HOM 6756


XCR1 KO HET 6758

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: XCR1 KO HET 6758

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HET 6758 a XCR1 heterozygous knockout, not vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 6758

characteristic: title


XCR1 KO HOM 6759

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: XCR1 KO HOM 6759

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HOM 6759 a XCR1 homozygous knockout, not vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HOM 6759


XCR1 KO HET 7867

text: public

characteristic: INSDC status

text: XCR1 KO HET 7867

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HET 7867 a XCR1 heterozygous knockout, not vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 7867


XCR1 KO HOM 7868

text: public

text: XCR1 KO HOM 7868

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HOM 7868 a XCR1 homozygous knockout, not vaccinated against IBV

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HOM 7868


XCR1 KO HET 6734

text: public

characteristic: SRA accession

text: XCR1 KO HET 6734

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HET 6734 a XCR1 heterozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: metagenome

text: metagenome

text: XCR1 KO HET 6734


XCR1 KO HOM 7864

text: public

text: XCR1 KO HOM 7864

characteristic: Submitter Id

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HOM 7864 a XCR1 homozygous knockout, vaccinated against IBV

characteristic: description

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

characteristic: project name

text: metagenome

text: XCR1 KO HOM 7864


XCR1 KO HET 6741

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: XCR1 KO HET 6741

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HET 6741 a XCR1 heterozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

characteristic: organism

text: metagenome

text: XCR1 KO HET 6741


XCR1 KO HET 7839

characteristic: External Id

characteristic: INSDC center name

text: public

text: XCR1 KO HET 7839

text: Gallus gallus

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HET 7839 a XCR1 heterozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 7839

characteristic: title


XCR1 KO HOM 7853

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: XCR1 KO HOM 7853

text: Gallus gallus

characteristic: broad-scale environmental context

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HOM 7853 a XCR1 homozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HOM 7853


XCR1 KO HOM 7857

text: The Roslin Institute (University of Edinburgh)

text: public

text: XCR1 KO HOM 7857

text: Gallus gallus

characteristic: collection date

text: metagenome

text: Caecal content sample from female chicken XCR1 KO HOM 7857 a XCR1 homozygous knockout, vaccinated against IBV

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HOM 7857


XCR1 KO HET 6730

text: public

characteristic: SRA accession

text: XCR1 KO HET 6730

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HET 6730 a XCR1 heterozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 6730


XCR1 KO HOM 6732

text: public

text: XCR1 KO HOM 6732

characteristic: Submitter Id

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HOM 6732 a XCR1 homozygous knockout, vaccinated against IBV

characteristic: description

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: metagenome

text: metagenome

text: XCR1 KO HOM 6732


XCR1 KO HOM 7865

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: XCR1 KO HOM 7865

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HOM 7865 a XCR1 homozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

characteristic: project name

text: metagenome

text: XCR1 KO HOM 7865


XCR1 KO HET 7840

characteristic: External Id

characteristic: INSDC center name

text: public

text: XCR1 KO HET 7840

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HET 7840 a XCR1 heterozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

characteristic: organism

text: metagenome

text: XCR1 KO HET 7840


XCR1 KO HOM 7852

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: XCR1 KO HOM 7852

text: Gallus gallus

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HOM 7852 a XCR1 homozygous knockout, vaccinated against IBV

text: Caecal contents

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HOM 7852

characteristic: title


XCR1 KO HET 7832

text: public

text: XCR1 KO HET 7832

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

text: metagenome

text: Caecal content sample from male chicken XCR1 KO HET 7832 a XCR1 heterozygous knockout, vaccinated against IBV

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

text: Gastrointestinal tract microbiota

text: metagenome

text: metagenome

text: XCR1 KO HET 7832


text: public

characteristic: SRA accession

text: Gallus gallus

text: metagenome

text: This sample is a virtual sample of assembled raw reads from multiple physical samples of ERS16138939, ERS16138940, ERS16138933, ERS16138921, ERS16138922, ERS16138923, ERS16138935, ERS16138924, ERS16138925, ERS16138926, ERS16138927, ERS16138928, ERS16138929, ERS16138930, ERS16138944, ERS16138936, ERS16138942, ERS16138943, ERS16138937, ERS16138938, ERS16138934, ERS16138941, ERS16138931, ERS16138932

text: Caecal contents

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Gastrointestinal tract microbiota

text: metagenome

characteristic: sample composed of

text: metagenome


text: public

characteristic: Submitter Id

text: Gallus gallus

text: metagenome

text: This sample is a virtual sample of assembled raw reads from multiple physical samples of ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: description

text: Caecal contents

text: United Kingdom

characteristic: geographic location (longitude)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: metagenome

text: metagenome


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Louvain Drug Research Institute

text: public

tag: Namespace:Louvain Drug Research Institute

text: gut microbiome

text: house mouse

characteristic: common name

text: mouse gut microbiota

text: caecal content

text: Belgium

unit: DD

text: control diet

characteristic: host diet

text: caecum

text: Mus musculus

text: control

characteristic: perturbation

text: High salt diet and uveitis

characteristic: project name

text: Mus musculus

text: Non-immunised


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method

characteristic: taxonomic identity marker

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11079_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

characteristic: project name

text: metagenome

text: Sequel IIe


text: public

text: 6730_HET_VAC_contig_11084_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11093_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_contig_11158_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11198_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_contig_11248_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11299_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_contig_11307_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11312_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_contig_11334_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11417_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_contig_11432_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11495_metaflye_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_contig_11551_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11565_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_contig_11624_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11652_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

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text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_11916_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_contig_12029_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_12063_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

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characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


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characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_contig_12190_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: HiCanu

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s1007.ctg001246c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s1035.ctg001277c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s108.ctg000169c_hifiasm_circ

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s11.ctg000016c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s115.ctg000177c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_s1164.ctg001419c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s1214.ctg001476c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s1243.ctg001505c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s1371.ctg001640c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s144.ctg000217c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s1443.ctg001716c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s151.ctg000227c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s1544.ctg001827c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s1741.ctg002041c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s1776.ctg002077c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s1854.ctg002157c_hifiasm_circ

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s1883.ctg002189c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s2087.ctg002408c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s212.ctg000315c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s2133.ctg002458c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2146.ctg002472c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s2156.ctg002484c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2178.ctg002507c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s2203.ctg002532c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2273.ctg002609c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s2336.ctg002683c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s241.ctg000350c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s2425.ctg002778c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2442.ctg002796c_hifiasm_circ

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s2483.ctg002840c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2493.ctg002850c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_s2760.ctg003139c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2784.ctg003164c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s281.ctg000397c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s284.ctg000402c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s2985.ctg003381c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s3049.ctg003449c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s3141.ctg003549c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s32.ctg000045c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s3215.ctg003629c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s3287.ctg003710c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s3585.ctg004024c_hifiasm_circ

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s367.ctg000510c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s3673.ctg004114c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s385.ctg000535c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s3975.ctg004426c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s4088.ctg004549c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s4192.ctg004659c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s4276.ctg004748c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s4282.ctg004755c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s4379.ctg004856c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s438.ctg000599c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s4471.ctg004950c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s4488.ctg004967c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s4573.ctg005055c_hifiasm_circ

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s4625.ctg005108c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s4635.ctg005119c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_s47.ctg000069c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s474.ctg000643c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s4919.ctg005423c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s4957.ctg005464c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s51.ctg000076c_hifiasm_circ

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s5122.ctg005639c_hifiasm_circ

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker