characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00037314_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


status: PUBLIC

tag: attribute

text: public

text: pooled_unmapgallusfeed_hifi_tig00037376_hicanu_large

tag: Namespace:The Roslin Institute (University of Edinburgh)

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker

characteristic: title


characteristic: ENA first public

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characteristic: INSDC center name

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characteristic: INSDC status

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characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: metagenome

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characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00037502_hicanu_large

characteristic: assembly quality

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characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

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characteristic: SRA accession

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characteristic: Submitter Id

text: HiCanu

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text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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characteristic: local environmental context

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text: pooled_unmapgallusfeed_hifi_tig00037605_hicanu_large

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characteristic: collection date

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text: United Kingdom

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text: HiCanu

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text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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text: Gastrointestinal tract microbiota

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text: chicken gut metagenome

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characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00037666_hicanu_large

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text: Gallus gallus

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characteristic: completeness score

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text: Caecal contents

text: United Kingdom

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characteristic: Submitter Id

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text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

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text: public

text: pooled_unmapgallusfeed_hifi_tig00037824_hicanu_large

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text: Not applicable

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characteristic: collection date

characteristic: completeness score

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characteristic: environmental medium

text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

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characteristic: local environmental context

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characteristic: assembly quality

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text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

characteristic: completeness software

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text: public

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text: pooled_unmapgallusfeed_hifi_tig00038000_hicanu_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

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text: Sequel IIe

characteristic: taxonomic identity marker


text: public

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characteristic: assembly quality

text: HiCanu

characteristic: assembly software

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

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characteristic: Submitter Id

text: HiCanu

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text: Gallus gallus

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text: Caecal contents

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text: United Kingdom

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characteristic: geographic location (longitude)

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text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

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text: metagenome

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00038371_hicanu_large

characteristic: assembly quality

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text: Not applicable

characteristic: binning software

text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

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text: HiCanu

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text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

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characteristic: local environmental context

text: chicken gut metagenome

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characteristic: assembly quality

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characteristic: binning parameters

text: Not applicable

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text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

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text: United Kingdom

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text: HiCanu

text: Not applicable

text: Gallus gallus

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characteristic: environmental medium

text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

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text: metagenome

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characteristic: taxonomic identity marker


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characteristic: assembly quality

text: HiCanu

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characteristic: binning parameters

text: Not applicable

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text: Gallus gallus

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characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

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characteristic: investigation type

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characteristic: organism

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text: HiCanu

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text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

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text: metagenome

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characteristic: assembly quality

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text: Not applicable

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text: Gallus gallus

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characteristic: collection date

characteristic: completeness score

characteristic: completeness software

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text: Caecal contents

text: United Kingdom

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text: metagenome

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text: Sequel IIe

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text: public

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characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

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characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

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text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

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text: United Kingdom

text: metagenome

characteristic: investigation type

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: Sequel IIe

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text: public

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characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00039576_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: The Roslin Institute (University of Edinburgh)

text: public

text: pooled_unmapgallusfeed_hifi_tig00039603_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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text: metagenome

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text: public

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text: pooled_unmapgallusfeed_hifi_tig00039615_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00040046_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

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text: metagenome

characteristic: organism

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text: Sequel IIe

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text: public

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text: pooled_unmapgallusfeed_hifi_tig00040199_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00040221_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

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text: metagenome

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00040562_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00040598_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: Sequel IIe

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text: public

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text: pooled_unmapgallusfeed_hifi_tig00040688_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00040951_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00040958_hicanu_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00041087_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00041133_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00041172_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00041423_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00041527_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

text: ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00041587_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00041594_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00041862_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00041863_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00041872_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00041966_hicanu_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00042021_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

text: pooled_unmapgallusfeed_hifi_tig00042276_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00042277_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00042552_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00042692_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00042767_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

text: ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00042938_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00042991_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00043137_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00043595_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00043623_hicanu_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00043911_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00044384_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00044486_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00044634_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00044635_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00044829_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00045256_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00045767_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00045873_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00045945_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00046000_hicanu_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00046015_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: The Roslin Institute (University of Edinburgh)

text: public

text: pooled_unmapgallusfeed_hifi_tig00046318_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00046491_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00046612_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00046651_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00047133_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

text: ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00047291_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00048001_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00048283_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00048284_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00048298_hicanu_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00048470_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00048520_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00048799_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00048845_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00049420_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00050675_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: ERS16138939, ERS16138940, ERS16138921, ERS16138927

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00051016_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00051148_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00051172_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00051968_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00051993_hicanu_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00052108_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: The Roslin Institute (University of Edinburgh)

text: public

text: pooled_unmapgallusfeed_hifi_tig00052303_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00052559_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: pooled_unmapgallusfeed_hifi_tig00052644_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00054735_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: pooled_unmapgallusfeed_hifi_tig00055276_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

text: ERS16138939, ERS16138940, ERS16138921, ERS16138927

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00056091_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: pooled_unmapgallusfeed_hifi_tig00056328_hicanu_large

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pooled_unmapgallusfeed_hifi_tig00056714_hicanu_large

characteristic: Submitter Id

text: HiCanu

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

characteristic: assembly quality

text: HiCanu

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT 2

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MEGAHIT

text: megahit--kmin-1pass --k-list 27,37,47,57,67,77,87 --min-contig-len 1000

text: MetaBAT 2

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138925

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Illumina NovaSeq 6000

characteristic: title


E-MTAB-13362:HFpEF week 10 rep 1

text: IMBUQ

text: public

text: E-MTAB-13362:HFpEF week 10 rep 1

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: Protocols: Hearts were minced and incubated in collagenase type II (Worthington) at 37oC before filtering through 40mm strainers. Cells were resuspended in red cell lysis buffer, followed by dead cell removal and two times wash with FACS buffer (2% FBS, 2mM EDTA in PBS, pH 7.4) before the acquisition. For CM nuclei extraction, strainers were washed with FACS buffer to collect CMs in a 50-ml Falcon tube. After 2 rounds of centrifugation (500g x 5 min), CM nuclei were isolated by swelling CMs in a hypotonic solution (91 mM NaCl, 5.3 mM KCl, 0.5 mM MgCl2, 0.293 mM CaCl2, 10 mM glucose, 10 mM HEPES at pH 7.4 and 0.05% Triton-X-100 supplemented with 40 U/ul RNasin® Ribonuclease Inhibitor (Promega Corporation)) before triturating cells using a 30-gauge hypodermic needle to mechanically fragment cells. Nuclei were then isolated by filtration through a 40 µm cell strainer to exclude large debris. Finally, nuclei suspension was centrifuged at (500g x 5 min) before staining with DAPI, followed by FACS for isolation of nuclei. FACS sorted live (DAPI-) TIP cells and CM nuclei were counted, and loaded on to the 10x Chromium microfluidics chip (3-prime v3.1). TIP and CM nuclei were FACS-sorted and subsequently pooled at specific proportions (50% TIP (without CD31+ cells), 20% CD31+ cells and 30% CM nuclei). Isolation of single cells was performed in two batches on separate days, with samples from each treatment group split across days to mitigate batch effects. Cells/nuclei from 2 mice were pooled together after FACS isolation and considered as one replicate and 2 replicates per condition were run for sequencing. FACS-sorted TIP cells and CM nuclei from each heart were manually counted using a hemocytometer and were mixed) and used for single cell transcriptomic library preparation on the Chromium controller (10X Genomics). Approximately 6000 total cells/nuclei (per condition) were loaded into each channel and processed using the Chromium Single Cell 3’ v3.1 reagent kit (10X Genomics). Following capture and lysis, we synthesized cDNA and amplified for 12 cycles as per manufacturer’s protocol (10X Genomics). The amplified cDNA was used to construct Illumina sequencing libraries that were each sequenced on one lane of an Illumina NovaSeq 6000 to an approximate depth of 30,000 reads per cell. Isolation of single cells was performed in two batches on separate days, with samples from each treatment group split across days to mitigate batch effects. 10x Chromium 3-prime v3.1 protocol 10x Chromium 3-prime v3.1 protocol

text: adult

characteristic: developmental stage

text: high fat diet/L-NAME

characteristic: diet

text: heart failure with preserved ejection fraction

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: HFpEF week 10 rep 1

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: C57BL/6J Inbred

characteristic: strain

text: HFpEF week 10 rep 1


E-MTAB-13362:HFpEF week 10 rep 2

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: IMBUQ

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13362:HFpEF week 10 rep 2

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: house mouse

characteristic: description

text: adult

text: high fat diet/L-NAME

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: HFpEF week 10 rep 2

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: C57BL/6J Inbred

text: HFpEF week 10 rep 2


E-MTAB-13362:HFpEF week 15 rep 1

text: IMBUQ

text: public

text: E-MTAB-13362:HFpEF week 15 rep 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: high fat diet/L-NAME

characteristic: diet

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: HFpEF week 15 rep 1

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: C57BL/6J Inbred

text: HFpEF week 15 rep 1

characteristic: title


E-MTAB-13362:HFpEF week 15 rep 2

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: IMBUQ

text: public

text: E-MTAB-13362:HFpEF week 15 rep 2

text: ArrayExpress

text: not collected

text: house mouse

text: adult

text: high fat diet/L-NAME

text: wild type genotype

text: not collected

text: HFpEF week 15 rep 2

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: C57BL/6J Inbred

characteristic: strain

text: HFpEF week 15 rep 2


E-MTAB-13362:NC week 10 rep 1

text: IMBUQ

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13362:NC week 10 rep 1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: house mouse

characteristic: description

text: adult

text: Normal chow

text: normal

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: NC week 10 rep 1

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: C57BL/6J Inbred

text: NC week 10 rep 1


E-MTAB-13362:NC week 10 rep 2

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: IMBUQ

text: public

text: E-MTAB-13362:NC week 10 rep 2

text: ArrayExpress

text: not collected

characteristic: collection date

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: Normal chow

characteristic: diet

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

text: NC week 10 rep 2

text: not applicable

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: C57BL/6J Inbred

text: NC week 10 rep 2

characteristic: title