characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000127l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


status: PUBLIC

tag: attribute

text: public

text: 6730_HET_VAC_s2.ctg000130l_hifiasm_large

tag: Namespace:The Roslin Institute (University of Edinburgh)

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

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text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000134l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s2.ctg000147l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

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text: metagenome

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characteristic: sequencing method


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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000197l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

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characteristic: title


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characteristic: assembly quality

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text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000213l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

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characteristic: sequencing method


text: public

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characteristic: assembly quality

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characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000233l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s2.ctg000254l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

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text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

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characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


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characteristic: External Id

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text: public

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text: 6730_HET_VAC_s2.ctg000272l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s2.ctg000302l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000312l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s2.ctg000327l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000331l_hifiasm_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s2.ctg000351l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

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text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

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text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

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text: public

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text: 6730_HET_VAC_s2.ctg000398l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s2.ctg000408l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

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text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000455l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s2.ctg000463l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

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text: metagenome

text: Sequel IIe

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characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000530l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s2.ctg000558l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000593l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s2.ctg000603l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000618l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s2.ctg000632l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000718l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s2.ctg000813l_hifiasm_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s2.ctg000876l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_s2.ctg001658l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s212.ctg000315c_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s22.ctg000082l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s22.ctg000098l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s22.ctg000256l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s22.ctg000269l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s22.ctg000533l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s22.ctg000550l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s224.ctg000328l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s225.ctg000329l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s228.ctg000333l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s234.ctg000340l_hifiasm_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s24.ctg000035l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s244.ctg000355l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s246.ctg000357l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s264.ctg000377l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s27.ctg000039l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s27.ctg000395l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s271.ctg000385l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s276.ctg000390l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s279.ctg000394l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s28.ctg000041l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s289.ctg000409l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s295.ctg000416l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s3.ctg000004l_hifiasm_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s3.ctg000080l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_s3.ctg000180l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s316.ctg000446l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s32.ctg000045c_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s367.ctg000510c_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s373.ctg000518l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s385.ctg000535c_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s407.ctg000565l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s416.ctg000575l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s459.ctg000625l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s466.ctg000634l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s48.ctg000070l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s48.ctg000109l_hifiasm_large

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s48.ctg000275l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The Roslin Institute (University of Edinburgh)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s48.ctg000294l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s48.ctg000376l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s503.ctg000677l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s51.ctg000076c_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s522.ctg000697l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s63.ctg000093l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s747.ctg000946l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_s75.ctg000117l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s790.ctg000996l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s8.ctg000012c_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s84.ctg000129l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s86.ctg000137c_hifiasm_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s882.ctg001104l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_s9.ctg000013l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s934.ctg001163l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_s948.ctg001178l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_s958.ctg001188l_hifiasm_large

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_s984.ctg001219l_hifiasm_large

characteristic: assembly quality

text: Hifiasm-meta

characteristic: assembly software

text: hifiasm_meta -oasm

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Hifiasm-meta

text: hifiasm_meta -oasm

text: MetaBAT 2

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_NODE_1_length_1378680_cov_25.012087_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_NODE_2_length_1228560_cov_14.759824_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6730_HET_VAC_NODE_3_length_955788_cov_92.259110_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_NODE_4_length_717181_cov_34.543002_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6730_HET_VAC_NODE_5_length_672527_cov_118.303559_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_NODE_6_length_636381_cov_21.858184_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6730_HET_VAC_NODE_7_length_616023_cov_24.768134_hybrid_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6730_HET_VAC_NODE_8_length_591360_cov_103.009501_hybrid_large

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: Not applicable

text: Gallus gallus

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138939

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: The Roslin Institute (University of Edinburgh)

text: public

text: 6730_HET_VAC_NODE_9_length_540487_cov_19.250063_hybrid_large

characteristic: assembly quality

text: metaSPAdes

characteristic: assembly software

text: spades.py --meta

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes

text: spades.py --meta

text: MetaBAT 2

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS16138940

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6732_HOM_VAC_contig_10561_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6732_HOM_VAC_contig_10694_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6732_HOM_VAC_contig_11795_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6732_HOM_VAC_contig_11798_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6732_HOM_VAC_contig_11803_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: sequencing method


text: public

text: 6732_HOM_VAC_contig_11806_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6732_HOM_VAC_contig_11810_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker


text: public

text: 6732_HOM_VAC_contig_11815_metaflye_large

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6732_HOM_VAC_contig_11846_metaflye_large

characteristic: Submitter Id

text: metaFlye

text: flye --meta --pacbio-hifi

text: Not applicable

text: Gallus gallus

characteristic: description

text: Caecal contents

characteristic: environmental medium

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Caecal contents from a chicken (Gallus gallus)

text: Gastrointestinal tract microbiota

characteristic: local environmental context

text: chicken gut metagenome

text: metagenome

text: metagenome

text: Sequel IIe

characteristic: title


text: public

text: 6732_HOM_VAC_contig_11922_metaflye_large

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaFlye

characteristic: assembly software

text: flye --meta --pacbio-hifi

characteristic: binning parameters

text: Not applicable

characteristic: binning software

text: Gallus gallus

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: Caecal contents

text: United Kingdom

text: metagenome

characteristic: investigation type

text: Gastrointestinal tract microbiota

text: chicken gut metagenome

characteristic: metagenomic source

text: metagenome

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: metagenome

text: Sequel IIe

characteristic: taxonomic identity marker