status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: AMSTERDAM UMC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:AMSTERDAM UMC

characteristic: Submitter Id

text: Human Aortic Endothelial Cells

text: endothelial cells

characteristic: collection date

text: human

characteristic: common name

text: HAECs stimulated with 100 nM ImP for 12h, replicate 1

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: AMSTERDAM UMC

text: public

text: Human Aortic Endothelial Cells

text: endothelial cells

text: human

text: HAECs stimulated with 100 nM ImP for 12h, replicate 2

text: Homo sapiens

text: Homo sapiens


text: AMSTERDAM UMC

text: public

text: Human Aortic Endothelial Cells

text: endothelial cells

text: human

text: HAECs stimulated with 100 nM ImP for 12h, replicate 3

text: Homo sapiens

text: Homo sapiens


text: AMSTERDAM UMC

text: public

text: Human Aortic Endothelial Cells

text: endothelial cells

text: human

text: HAECs stimulated with medium for 12h, replicate 1

text: Homo sapiens

text: Homo sapiens


text: AMSTERDAM UMC

text: public

text: Human Aortic Endothelial Cells

text: endothelial cells

text: human

text: HAECs stimulated with medium for 12h, replicate 2

text: Homo sapiens

text: Homo sapiens


text: AMSTERDAM UMC

text: public

text: Human Aortic Endothelial Cells

text: endothelial cells

text: human

text: HAECs stimulated with medium for 12h, replicate 3

text: Homo sapiens

text: Homo sapiens


E-MTAB-13008:Sample 1

text: public

text: E-MTAB-13008:Sample 1

tag: Namespace:Instituto de Investigacion Sanitaria del Principado de Asturias (ISPA)

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Fresh visceral adipose tissue and skeletal muscle were obtained simultaneously during the bariatric surgery procedure under sterile conditions and immediately transported to the laboratory. A laminar flux cabin was used for tissue manipulation to avoid contamination and blood vessels were cleaned out by using tweezers and scissors. Then, samples were frozen at -80oC immediately total RNA of each sample was extracted from 50-100 mg of tissue by using trizol reagent. Total RNA of each sample was used to prepare the miRNA sequencing library. After the completed libraries were quantified with Agilent 2100 Bioanalyzer, the DNA fragments in the libraries were denatured with 0.1M NaOH to generate single-stranded DNA molecules, captured on Illumina flow cells, amplified in situ and finally sequenced for 51 cycles on Illumina NextSeq 500 according to the manufacturer’s instruction. The libraries were denatured as single-stranded DNA molecules, captured on Illumina flow cells, amplified in situ as clusters and finally sequenced for 51 cycles on Illumina NextSeq per the manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: morbid obesity

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


E-MTAB-13008:Sample 10

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Instituto de Investigacion Sanitaria del Principado de Asturias (ISPA)

characteristic: INSDC center name

text: public

text: E-MTAB-13008:Sample 10

text: ArrayExpress

text: human

text: adult

text: morbid obesity

text: Homo sapiens

text: Homo sapiens

text: visceral abdominal adipose tissue

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-13008:Sample 11

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13008:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: morbid obesity

text: Homo sapiens

text: Homo sapiens

text: visceral abdominal adipose tissue

text: Homo sapiens

text: female

text: Sample 11


E-MTAB-13008:Sample 12

text: public

text: E-MTAB-13008:Sample 12

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

text: morbid obesity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: visceral abdominal adipose tissue

text: Homo sapiens

text: female

text: Sample 12


E-MTAB-13008:Sample 2

text: public

text: E-MTAB-13008:Sample 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: morbid obesity

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: Homo sapiens

text: female

text: Sample 2

characteristic: title


E-MTAB-13008:Sample 3

text: public

text: E-MTAB-13008:Sample 3

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: morbid obesity

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-13008:Sample 4

characteristic: ENA first public

text: public

text: E-MTAB-13008:Sample 4

text: ArrayExpress

text: human

text: adult

text: morbid obesity

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 4


E-MTAB-13008:Sample 5

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-13008:Sample 5

text: ArrayExpress

text: human

text: adult

text: morbid obesity

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: Homo sapiens

text: female

text: Sample 5


E-MTAB-13008:Sample 6

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13008:Sample 6

text: ArrayExpress

text: human

text: adult

text: morbid obesity

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-13008:Sample 7

text: public

text: E-MTAB-13008:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

text: morbid obesity

text: Homo sapiens

text: Homo sapiens

text: visceral abdominal adipose tissue

text: Homo sapiens

text: female

text: Sample 7


E-MTAB-13008:Sample 8

text: public

text: E-MTAB-13008:Sample 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: morbid obesity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: visceral abdominal adipose tissue

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-13008:Sample 9

text: public

text: E-MTAB-13008:Sample 9

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: morbid obesity

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: visceral abdominal adipose tissue

text: Homo sapiens

text: female

text: Sample 9

characteristic: title


characteristic: ENA first public

text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

characteristic: collection date

text: Illumina shotgun metagenome of human fecal microbiome from donor sample

text: Denmark

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: MicroPouch

characteristic: project name

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: AALBORG UNIVERSITY

characteristic: INSDC center name

text: public

text: Illumina shotgun metagenome of human fecal microbiome from patient

text: Denmark

text: human gut metagenome

text: MicroPouch

text: human gut metagenome


text: AALBORG UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Negative control - Nuclease Free Water

text: Denmark

text: human gut metagenome

text: MicroPouch

text: human gut metagenome


text: AALBORG UNIVERSITY

text: public

characteristic: Submitter Id

text: DNA Extraction Positive control - Activated Sludge

characteristic: description

text: Denmark

text: human gut metagenome

text: MicroPouch

text: human gut metagenome


text: AALBORG UNIVERSITY

text: public

text: Library Positive control - Activated Sludge

text: Denmark

text: human gut metagenome

text: MicroPouch

text: human gut metagenome


text: ECEHH - April Hayes

text: public

text: illumina metagenomic sequencing

text: estradiol

text: United Kingdom

text: wastewater influent

text: wastewater metagenome

text: wastewater metagenome


text: ECEHH - April Hayes

text: public

text: illumina transcriptomic sequencing

text: metformin

text: United Kingdom

text: wastewater influent

text: wastewater metagenome

text: wastewater metagenome


text: ECEHH - April Hayes

text: public

text: illumina metagenomic sequencing

text: diclofenac

text: United Kingdom

text: wastewater influent

text: wastewater metagenome

text: wastewater metagenome


text: Fred Hutch

text: public

text: fecal sample

characteristic: broad-scale environmental context

text: study participant fecal sample

text: DNA Genotek OMNIgene Gut OMR-200

characteristic: environmental medium

text: USA

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: fecal sample

characteristic: local environmental context

text: human gut metagenome

text: fecal microbiomes in juvenile dermatomyositis

text: human gut metagenome

text: fecal bacterial V4-16S rRNA sequencing datasets


characteristic: ENA first public

text: Fred Hutch

text: public

text: saliva sample

text: study participant saliva sample

text: DNA Genotek OMNIgene Oral OM-505

text: USA

text: saliva sample

text: human saliva metagenome

characteristic: organism

text: saliva microbiomes in juvenile dermatomyositis

text: human saliva metagenome

text: saliva bacterial V4-16S rRNA sequencing datasets

characteristic: title


text: Fred Hutch

text: public

text: anterior subgingival sample

characteristic: collection date

text: study participant anterior subgingival sample

text: DNA Genotek OMNIgene Oral OM-505

text: USA

characteristic: geographic location (country and/or sea)

text: anterior subgingival sample

text: human oral metagenome

text: anterior subgingival microbiomes in juvenile dermatomyositis

characteristic: project name

text: human oral metagenome

text: anterior subgingival bacterial V4-16S rRNA sequencing datasets


characteristic: ENA-CHECKLIST

text: Fred Hutch

characteristic: INSDC center name

text: public

text: posterior subgingival sample

text: study participant posterior subgingival sample

text: DNA Genotek OMNIgene Oral OM-505

text: USA

text: posterior subgingival sample

text: human oral metagenome

text: posterior subgingival microbiomes in juvenile dermatomyositis

text: human oral metagenome

text: posterior subgingival bacterial V4-16S rRNA sequencing datasets


text: Fred Hutch

text: public

characteristic: INSDC status

text: supragingival sample

text: study participant supragingival sample

text: DNA Genotek OMNIgene Oral OM-505

text: USA

text: supragingival sample

text: human oral metagenome

text: supragingival microbiomes in juvenile dermatomyositis

text: human oral metagenome

text: supragingival bacterial V4-16S rRNA sequencing datasets


text: NIOO-KNAW

text: public

characteristic: SRA accession

text: Greenhouse

unit: m

characteristic: depth

characteristic: elevation

text: soil

text: Netherlands

text: not collected

text: not collected

text: pot experiment

text: soil metagenome

text: Drought mitigates negative effects of natural microbiomes in grasses

text: soil metagenome

text: Microbial communities


text: CENTRE FOR GEOGENETICS

text: public

characteristic: Submitter Id

text: not provided

text: human

characteristic: common name

characteristic: description

text: Sweden

text: Homo sapiens

text: Homo sapiens


text: McGill University

text: public

text: Wastewater

characteristic: broad-scale environmental context

text: Lab scale activated sludge reactor sample

text: Wastewater

characteristic: environmental medium

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Activated sludge

text: activated sludge metagenome

text: Immigration Experiment

text: activated sludge metagenome


characteristic: ENA first public

text: Open Genomes

text: public

text: human

text: human donor

text: Slovakia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

text: Earlham Institute

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: CONTACT DAVID BELL FROM ROYAL BOTATIC GARDENS EDINBURGH| NOTE VOUCHERED SPECIMEN IS A SIBLING

text: COPO

characteristic: broker name

text: DANA MACGREGOR

text: ROTHAMSTED RESEARCH

characteristic: collecting institution

characteristic: collection date

characteristic: collector ORCID ID

text: DERIVED FROM KEW MILLENIAL SEED BANK REFERENCE 828127

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Rothamsted

characteristic: geographic location (region and locality)

text: NOT APPLICABLE

characteristic: habitat

text: ROYAL BOTANIC GARDENS, KEW

text: ROYAL BOTANIC GARDENS, KEW

text: vegetative structure

characteristic: lifestage

text: Alopecurus aequalis

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: UNITED KINGDOM

characteristic: original geographic location

text: ERGA

characteristic: project name

text: SAMPLES WITH 'A' OR 'B' AFTER THE KEW REFERENCE ARE CLONES OR EACH OTHER | ALL ROOT SAMPLES ARE SIBLINGS OF EACH OTHER AND HAVE AN ASSOCIATED WITH A SHOOT SAMPLE VIA THE LETTER SUFFIX AFTER THE KEW REFERENCE| ALL FLOWERS HEADS  AND FLAG LEAVES ARE ASSUMED TO BE FROM DIFFERENT PLANTS, BUT MIGHT BE FROM THE SAME

characteristic: relationship

text: NOT APPLICABLE

characteristic: sample collection method

text: ANTHONY HALL

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

text: EARLHAM INSTITUTE

characteristic: sample coordinator affiliation

text: Alopecurus aequalis

text: NOT APPLICABLE

text: ERGA AH 6020 00018

text: b5c8a454-06b2-4578-a1b2-35198ad70326-ERGA-specimen

characteristic: tolid


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Earlham Institute

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DANA MACGREGOR

text: ROTHAMSTED RESEARCH

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Rothamsted

text: NOT APPLICABLE

text: ROYAL BOTANIC GARDENS, KEW

text: ROYAL BOTANIC GARDENS, KEW

text: vegetative structure

text: Alopecurus aequalis

characteristic: organism

text: WHOLE ORGANISM

text: UNITED KINGDOM

text: ERGA

text: NOT APPLICABLE

text: ANTHONY HALL

text: EARLHAM INSTITUTE

text: Alopecurus aequalis

text: NOT APPLICABLE

characteristic: sex

text: ERGA AH 6020 00017

text: 3f8f1161-ecca-498e-a584-bbe31c825373-ERGA-specimen

characteristic: title


text: Sanger Institute

text: Tree of Life Programme

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland | North Ayrshire | Great Cumbrae | Farland Point

characteristic: geographic location (region and locality)

text: MARINE

characteristic: habitat

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

characteristic: lifestage

text: Porcellana platycheles

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Porcellana platycheles

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: green crab

characteristic: common name

text: United Kingdom

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Carcinus maenas

text: WHOLE ORGANISM

text: Carcinus maenas

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: tolid


text: Sanger Institute

text: Tree of Life Programme

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: edible crab

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Cancer pagurus

characteristic: organism

text: WHOLE ORGANISM

text: Cancer pagurus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA first public

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Mark Blaxter

text: Wellcome Sanger Institute

text: 0 m

characteristic: depth

text: United Kingdom

text: Scotland | North Ayrshire | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: marine

characteristic: habitat

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Munida rugosa

text: BRAIN

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Munida rugosa

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont


characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Amjad Khalaf

text: Wellcome Sanger Institute

characteristic: collecting institution

text: common hermit crab

characteristic: common name

text: United Kingdom

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Pagurus bernhardus

text: WHOLE ORGANISM

characteristic: sample same as

text: Pagurus bernhardus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: tolid


characteristic: ENA first public

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Pisidia longicornis

characteristic: organism

text: WHOLE ORGANISM

text: Pisidia longicornis

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: green crab

text: United Kingdom

text: MARINE

characteristic: habitat

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

characteristic: lifestage

text: Carcinus maenas

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Carcinus maenas

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont


characteristic: ENA first public

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Amjad Khalaf

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Porcellana platycheles

text: WHOLE ORGANISM

characteristic: sample same as

text: Porcellana platycheles

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: tolid


text: Sanger Institute

text: Tree of Life Programme

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

characteristic: collection date

text: common hermit crab

characteristic: common name

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Pagurus bernhardus

characteristic: organism

text: WHOLE ORGANISM

text: Pagurus bernhardus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: United Kingdom

text: MARINE

characteristic: habitat

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

characteristic: lifestage

text: Palaemon serratus

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Palaemon serratus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA first public

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Amjad Khalaf

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Pinnotheres pisum

text: WHOLE ORGANISM

characteristic: sample same as

text: Pinnotheres pisum

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

text: Tree of Life Programme

text: public

text: Mark Blaxter

text: Wellcome Sanger Institute

characteristic: collection date

text: 0 m

characteristic: depth

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: marine

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: adult

text: Munida rugosa

characteristic: organism

text: LEG

characteristic: sample derived from

text: Munida rugosa

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: edible crab

characteristic: common name

text: United Kingdom

text: MARINE

characteristic: habitat

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

characteristic: lifestage

text: Cancer pagurus

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Cancer pagurus

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: title


text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Mark Blaxter

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: 0 m

characteristic: depth

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: marine

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: adult

text: Munida rugosa

text: MUSCLE

text: Munida rugosa

text: NOT COLLECTED

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

text: public

text: Amjad Khalaf

text: Wellcome Sanger Institute

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: MARINE

text: AMJAD KHALAF

text: Tree of Life, Sanger Institute

text: adult

text: Necora puber

characteristic: organism

text: WHOLE ORGANISM

characteristic: sample same as

text: Necora puber

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-05-2022-10:39:27:846-9161

tag: Namespace:Department of Biology - University of Padova

text: RNA extracted from sediment samples at the Chioggia inlet, Venice Lagoon

characteristic: description

text: marine sediment

characteristic: environment (biome)

text: lagoon sediment

characteristic: environment (feature)

text: surface sediment

characteristic: environment (material)

text: Italy

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

characteristic: investigation type

text: marine sediment metagenome

text: Ribodepletion test on lagoon sediment samples

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina NovaSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Department of Biology - University of Padova

text: public

text: ena-SAMPLE-TAB-10-05-2022-10:45:10:884-9163

characteristic: Submitter Id

characteristic: collection date

text: RNA extracted from sediment samples at Marghera, Venice Lagoon

text: marine sediment

text: lagoon sediment

text: surface sediment

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

text: marine sediment metagenome

characteristic: organism

text: marine sediment metagenome

text: sediment

text: Illumina NovaSeq


characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-10-05-2022-10:53:15:820-8339

text: RNA extracted from sediment samples at Palude della Rosa, Venice Lagoon

characteristic: description

text: marine sediment

characteristic: environment (biome)

text: lagoon sediment

characteristic: environment (feature)

text: surface sediment

text: Italy

text: metatranscriptome

text: marine sediment metagenome

text: marine sediment metagenome

text: sediment

text: Illumina NovaSeq


text: Center for Microbial Communities

text: public

tag: Namespace:Center for Microbial Communities

text: MAG from a laboratory enrichment culture

text: metagenome

text: metagenome

text: MQ MAG for unclassified Bacteria (taxid: 49928)

characteristic: title


characteristic: ENA first public

text: Center for Microbial Communities

text: public

text: metagenome

text: metagenome

text: HQ MAG for unclassified Pseudomonadaceae (taxid: 190017)


characteristic: ENA-CHECKLIST

text: Hospital Ramon y Cajal, Madrid, Spain

text: public

tag: Namespace:Hospital Ramon y Cajal, Madrid, Spain

text: Spain

text: Yes

characteristic: host HIV status

unit: centuries

characteristic: host age

text: anal cytobrush

characteristic: host body site

text: HSIL

characteristic: host disease status

text: Male

characteristic: host sex

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: SCRAtCH

characteristic: project name

text: human gut metagenome

text: sequencing by synthesis

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text: Hospital Ramon y Cajal, Madrid, Spain

characteristic: INSDC center name

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text: public

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text: Spain

characteristic: geographic location (country and/or sea)

text: Yes

text: anal cytobrush

text: LSIL

text: Male

text: metagenome

text: human gut metagenome

characteristic: organism

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spain

text: Yes

text: anal cytobrush

text: normal

text: Male

text: metagenome

text: human gut metagenome

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis

characteristic: title


characteristic: ENA first public

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text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Spain

text: Yes

characteristic: host HIV status

text: anal cytobrush

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text: Male

text: metagenome

text: human gut metagenome

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Spain

characteristic: host age

text: anal cytobrush

characteristic: host body site

text: LSIL

characteristic: host disease status

text: Female

text: metagenome

text: human gut metagenome

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Spain

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characteristic: host sex

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text: Hospital Ramon y Cajal, Madrid, Spain

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text: public

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text: Female

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text: human gut metagenome

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text: human gut metagenome

text: sequencing by synthesis

characteristic: sequencing method


text: Hospital Ramon y Cajal, Madrid, Spain

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Spain

characteristic: geographic location (country and/or sea)

text: anal cytobrush

text: normal

text: Male

text: metagenome

text: human gut metagenome

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

characteristic: INSDC status

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text: Spain

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text: metagenome

text: human gut metagenome

characteristic: organism

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Spain

text: anal cytobrush

text: LSIL

text: Transgender Woman

text: metagenome

text: human gut metagenome

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis

characteristic: title


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Spain

characteristic: host age

text: anal cytobrush

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text: not valid

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text: metagenome

text: human gut metagenome

text: SCRAtCH

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text: sequencing by synthesis


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Spain

text: anal cytobrush

text: Female

characteristic: host sex

text: metagenome

text: human gut metagenome

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Spain

text: anal cytobrush

text: Male

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: SCRAtCH

text: human gut metagenome

text: sequencing by synthesis


text: Hospital Ramon y Cajal, Madrid, Spain

text: public

text: Italy

text: anal cytobrush

text: metagenome

text: human gut metagenome

text: SCRAtCH

characteristic: project name

text: human gut metagenome

text: sequencing by synthesis


characteristic: External Id

text: Hospital Ramon y Cajal, Madrid, Spain

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text: Italy

text: anal cytobrush

text: Male

text: metagenome

text: human gut metagenome

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text: sequencing by synthesis


text: Center for Microbial Communities

characteristic: INSDC center name

text: public

characteristic: description

text: metagenome

text: metagenome


text: Center for Microbial Communities

characteristic: INSDC last update

text: public

text: metagenome

text: metagenome


text: Mycobacteroides abscessus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: Submitter Id

text: Mycobacteroides abscessus

characteristic: common name

text: Mycobacteroides abscessus

text: Mycobacteroides abscessus


text: Geomar Helmholtz Centre

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: SRA accession

text: COPO

characteristic: broker name

text: RODRIGO COSTA

characteristic: collected by

text: UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sagres

characteristic: geographic location (region and locality)

text: Coastal Seawater

characteristic: habitat

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

characteristic: lifestage

text: Cliona viridis

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

text: Cliona viridis

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: 007dac96-b5fd-4bb7-9e39-e2a3e32468e5-ASG-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: ALG21 270

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: RODRIGO COSTA

text: Portugal

text: Sagres

text: Coastal Seawater

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

text: Cliona viridis

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: sample derived from

text: Cliona viridis

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 2032e6b7-05e4-4f3b-a3fb-f269b178cabc-asg

characteristic: title


text: Geomar Helmholtz Centre

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characteristic: collected by

characteristic: collecting institution

characteristic: collection date

characteristic: depth

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sagres

characteristic: geographic location (region and locality)

text: Coastal Seawater

characteristic: habitat

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

text: Cliona viridis

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Cliona viridis

text: NOT PROVIDED

text: N

text: 90fa15cd-f83f-4900-800c-a00c7ec2df7a-asg


characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: ALG21 270

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characteristic: INSDC center name

characteristic: SRA accession

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text: RODRIGO COSTA

text: Portugal

text: Sagres

text: Coastal Seawater

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

characteristic: lifestage

text: Cliona viridis

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

text: Cliona viridis

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: N

text: a79562e2-a0e4-460d-9eae-5ca0d06c6270-asg

characteristic: tolid


text: Geomar Helmholtz Centre

text: ALG21 270

text: EarlhamInstitute

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characteristic: broker name

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characteristic: collected by

characteristic: collecting institution

characteristic: collection date

text: Portugal

text: Sagres

text: Coastal Seawater

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

text: Cliona viridis

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: sample derived from

text: Cliona viridis

text: NOT PROVIDED

text: N

characteristic: symbiont

text: d20f05f7-bd72-4da8-8024-0065026274e3-asg

characteristic: title


characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

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text: ALG21 270

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: COPO

text: RODRIGO COSTA

characteristic: depth

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sagres

characteristic: geographic location (region and locality)

text: Coastal Seawater

characteristic: habitat

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

text: Cliona viridis

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Cliona viridis

text: NOT PROVIDED

text: N

text: 8619bc8d-df21-4344-86cb-71fdbfa88ce5-asg


text: Geomar Helmholtz Centre

text: ALG21 270

text: EarlhamInstitute

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: RODRIGO COSTA

characteristic: collected by

characteristic: collecting institution

text: Portugal

text: Sagres

text: Coastal Seawater

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

characteristic: lifestage

text: Cliona viridis

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

text: Cliona viridis

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: N

text: c84da621-f228-4b5d-9077-16e056798717-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: ALG21 270

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: COPO

text: RODRIGO COSTA

characteristic: collection date

text: Portugal

text: Sagres

text: Coastal Seawater

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

text: Cliona viridis

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: sample derived from

text: Cliona viridis

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 17302a91-0f59-492d-8368-1e28e9830d43-asg

characteristic: title


text: Geomar Helmholtz Centre

text: ALG21 270

text: EarlhamInstitute

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: RODRIGO COSTA

characteristic: collected by

characteristic: collecting institution

characteristic: depth

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sagres

characteristic: geographic location (region and locality)

text: Coastal Seawater

characteristic: habitat

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

text: Cliona viridis

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Heterotrophic Microbiome (Mostly)

text: Cliona viridis

text: NOT PROVIDED

text: N

text: 21fd545a-a577-44e6-8466-15fd5b6e46a6-asg


characteristic: ENA-CHECKLIST

text: Geomar Helmholtz Centre

characteristic: GAL

text: ALG21 270

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: SRA accession

text: COPO

text: RODRIGO COSTA

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text: Sagres

text: Coastal Seawater

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

characteristic: lifestage

text: Cliona viridis

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

text: Heterotrophic Microbiome (Mostly)

characteristic: relationship

text: Cliona viridis

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: N

text: 7cb8d29b-e049-4fa9-b910-56a788288c00-asg

characteristic: tolid


text: Geomar Helmholtz Centre

text: ALG21 270

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characteristic: collected by

characteristic: collecting institution

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text: Portugal

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text: Coastal Seawater

text: JORGE GONÃ‡ALVES

text: CENTRE OF MARINE SCIENCES

text: adult

text: Cliona viridis

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

characteristic: project name

text: Heterotrophic Microbiome (Mostly)

characteristic: sample derived from

text: Cliona viridis

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 5ea1d06d-9a52-4572-8bff-3ebfe81d629a-asg

characteristic: title