E-MTAB-13017:Sample 1

status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 1

tag: Namespace:The First Affiliated Hospital of Kunming Medical University

characteristic: Submitter Id

text: 1 to 3

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: house mouse

characteristic: common name

text: Protocols: Primary cortical neuron culture was established from C57BL/6 neonatal mice aged 1-3 days by collecting brain tissue from the cerebral cortex after decapitation, and divided into control group, OGD/R group, and breviscapine administration group. Total RNA was isolated and purified by TRIzol reagent following the instruction manual. These compounds doublets of DNA and RNA were converted into DNA doublets, dUTP Solution was incorporated into the doublets at the same time, and the ends of the double-stranded DNA were complemented to flat ends. An additional base was added to each end to enable ligation with a linker with a T base at the end, and its fragment size was screened and purified using magnetic beads. The second strand was digested with UDG enzyme, and then PCR was performed to form a library with a fragment size of 300bp ± 50bp.

characteristic: description

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

text: primary cortical neuron culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: control

characteristic: study group

text: Sample 1

characteristic: title


E-MTAB-13017:Sample 10

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: The First Affiliated Hospital of Kunming Medical University

characteristic: INSDC center name

text: public

text: E-MTAB-13017:Sample 10

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: normal

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: control

text: Sample 10


E-MTAB-13017:Sample 11

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 11

characteristic: Submitter Id

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: oxygen-glucose deprivation/reoxygenation

characteristic: environmental stress

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: OGD/R

text: Sample 11


E-MTAB-13017:Sample 12

text: public

text: E-MTAB-13017:Sample 12

text: 1 to 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: house mouse

characteristic: common name

characteristic: description

text: neonate

characteristic: developmental stage

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: OGD/R

text: Sample 12


E-MTAB-13017:Sample 13

text: public

text: E-MTAB-13017:Sample 13

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

characteristic: disease

text: primary cortical neuron culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: OGD/R

text: Sample 13


E-MTAB-13017:Sample 14

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-13017:Sample 14

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: OGD/R

characteristic: study group

text: Sample 14

characteristic: title


E-MTAB-13017:Sample 15

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 15

characteristic: Submitter Id

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: OGD/R

text: Sample 15


E-MTAB-13017:Sample 16

text: public

text: E-MTAB-13017:Sample 16

text: 1 to 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: stroke

characteristic: environmental stress

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: OGD/R

text: Sample 16


E-MTAB-13017:Sample 17

text: public

text: E-MTAB-13017:Sample 17

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

characteristic: developmental stage

text: stroke

characteristic: disease

text: primary cortical neuron culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: OGD/R

text: Sample 17


E-MTAB-13017:Sample 18

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-13017:Sample 18

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

characteristic: strain

text: OGD/R

characteristic: study group

text: Sample 18


E-MTAB-13017:Sample 19

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 19

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: OGD/R

text: Sample 19

characteristic: title


E-MTAB-13017:Sample 2

text: public

text: E-MTAB-13017:Sample 2

characteristic: Submitter Id

text: 1 to 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: normal

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: control

text: Sample 2


E-MTAB-13017:Sample 20

text: public

text: E-MTAB-13017:Sample 20

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

characteristic: developmental stage

text: stroke

characteristic: disease

characteristic: environmental stress

text: primary cortical neuron culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: OGD/R

text: Sample 20


E-MTAB-13017:Sample 21

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-13017:Sample 21

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: therapy

text: Sample 21


E-MTAB-13017:Sample 22

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 22

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: therapy

characteristic: study group

text: Sample 22


E-MTAB-13017:Sample 23

text: public

text: E-MTAB-13017:Sample 23

characteristic: Submitter Id

text: 1 to 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: house mouse

characteristic: common name

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: therapy

text: Sample 23

characteristic: title


E-MTAB-13017:Sample 24

text: public

text: E-MTAB-13017:Sample 24

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

characteristic: description

text: neonate

characteristic: developmental stage

text: stroke

characteristic: disease

characteristic: environmental stress

text: primary cortical neuron culture

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: therapy

text: Sample 24


E-MTAB-13017:Sample 25

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-13017:Sample 25

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: therapy

text: Sample 25


E-MTAB-13017:Sample 26

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 26

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

characteristic: strain

text: therapy

text: Sample 26


E-MTAB-13017:Sample 27

text: public

text: E-MTAB-13017:Sample 27

characteristic: Submitter Id

text: 1 to 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: house mouse

characteristic: common name

text: neonate

text: stroke

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: therapy

characteristic: study group

text: Sample 27


E-MTAB-13017:Sample 28

text: public

text: E-MTAB-13017:Sample 28

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

characteristic: description

text: neonate

characteristic: developmental stage

text: stroke

characteristic: disease

characteristic: environmental stress

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: therapy

text: Sample 28

characteristic: title


E-MTAB-13017:Sample 29

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-13017:Sample 29

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: stroke

text: primary cortical neuron culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: therapy

text: Sample 29


E-MTAB-13017:Sample 3

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 3

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: normal

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: control

text: Sample 3


E-MTAB-13017:Sample 30

text: public

text: E-MTAB-13017:Sample 30

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neuron

text: stroke

text: primary cortical neuron culture

text: Mus musculus x Mus spretus

text: Mus musculus x Mus spretus

text: brain

text: Mus musculus x Mus spretus

text: therapy

text: Sample 30


E-MTAB-13017:Sample 4

text: public

text: E-MTAB-13017:Sample 4

text: 1 to 3

characteristic: age

text: ArrayExpress

text: neuron

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: normal

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

characteristic: strain

text: control

characteristic: study group

text: Sample 4


E-MTAB-13017:Sample 5

characteristic: ENA first public

text: public

text: E-MTAB-13017:Sample 5

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: control

text: Sample 5

characteristic: title


E-MTAB-13017:Sample 6

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-13017:Sample 6

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: normal

text: primary cortical neuron culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: control

text: Sample 6


E-MTAB-13017:Sample 7

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13017:Sample 7

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

text: neonate

text: normal

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: control

text: Sample 7


E-MTAB-13017:Sample 8

text: public

text: E-MTAB-13017:Sample 8

characteristic: Submitter Id

text: 1 to 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: house mouse

text: neonate

text: normal

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: control

text: Sample 8


E-MTAB-13017:Sample 9

text: public

text: E-MTAB-13017:Sample 9

text: 1 to 3

text: ArrayExpress

text: neuron

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: normal

text: primary cortical neuron culture

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

characteristic: strain

text: control

characteristic: study group

text: Sample 9


characteristic: ENA first public

text: THE UNIVERSITY OF SYDNEY

text: public

tag: Namespace:THE UNIVERSITY OF SYDNEY

characteristic: collection date

text: house mouse

text: Wildtype mice following chronic experimental colitis

text: Australia

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: THE UNIVERSITY OF SYDNEY

text: public

text: house mouse

text: Wildtype mice before chronic experimental colitis

text: Australia

text: Mus musculus

characteristic: organism

text: Mus musculus


text: THE UNIVERSITY OF SYDNEY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: MPO deficient mice before chronic experimental colitis

text: Australia

text: Mus musculus

text: Mus musculus


text: THE UNIVERSITY OF SYDNEY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: MPO deficient mice following chronic experimental colitis

text: Australia

text: Mus musculus

text: Mus musculus


text: IGC

text: public

text: house mouse

text: Hepa1-6 cell line Early-S replicate 1

text: not applicable

text: Mus musculus

text: Early

text: Mus musculus


text: IGC

text: public

text: house mouse

text: Hepa1-6 cell line Late-S replicate 1

text: not applicable

text: Mus musculus

text: Late

text: Mus musculus


text: IGC

text: public

text: house mouse

text: Hepa1-6 cell line Early-S replicate 2

text: not applicable

text: Mus musculus

text: Early

text: Mus musculus


text: IGC

text: public

text: house mouse

text: Hepa1-6 cell line Late-S replicate 2

text: not applicable

text: Mus musculus

text: Late

text: Mus musculus


text: Mohammed Al Abri

text: public

tag: Namespace:Mohammed Al Abri

text: Arabian camel

text: Camel Hair

text: Oman

text: Camelus dromedarius

text: Camelus dromedarius

text: camel


text: Royal Botanic Gardens, Kew

text: public

tag: Namespace:Royal Botanic Gardens, Kew

text: Goyder, D.J.

characteristic: collectorNo

text: not provided

text: Urochloa dura

text: Urochloa dura

text: Goyder, D.J. 8289 (K); K001333199

text: Urochloa dura


text: Royal Botanic Gardens, Kew

text: public

text: Unmounted

text: Vorontsova, M.S.

text: not provided

text: Urochloa brizantha

text: Urochloa brizantha

text: Vorontsova, M.S. 1665 (K); Unmounted

text: Urochloa brizantha


text: Royal Botanic Gardens, Kew

text: public

text: Germain

text: not provided

text: not provided

text: unidentified

text: unidentified

text: Germain 8229 (K); K000282149

text: Urochloa eminii


text: Royal Botanic Gardens, Kew

text: public

text: Ankrah, J.O.

text: not provided

text: unidentified

text: unidentified

text: Ankrah, J.O. 20103 (K); K001390825

text: Urochloa falcifera


text: Royal Botanic Gardens, Kew

text: public

text: Bingham, M.G.

text: not provided

text: Urochloa jubata

text: Urochloa jubata

text: Bingham, M.G. 10868 (K); K001390822

text: Urochloa jubata


text: Royal Botanic Gardens, Kew

text: public

text: Friis, I.

text: not provided

text: Urochloa leersioides

text: Urochloa leersioides

text: Friis, I. 12982 (K); K001390819

text: Urochloa leersioides


text: Royal Botanic Gardens, Kew

text: public

text: Sanou, L.

text: not provided

text: Urochloa mutica

text: Urochloa mutica

text: Sanou, L. 687371 (K); K001271132

text: Urochloa mutica


text: Royal Botanic Gardens, Kew

text: public

text: Mitchell, B.L.

text: not provided

text: unidentified

text: unidentified

text: Mitchell, B.L. 6/84 (K); K001390817

text: Urochloa oligobrachiata


text: Royal Botanic Gardens, Kew

text: public

text: Phillips , S.

text: not provided

text: Urochloa platynota

text: Urochloa platynota

text: Phillips , S. 3194 (K); K001390824

text: Urochloa platynota


text: Royal Botanic Gardens, Kew

text: public

text: Tisserant, R.P.C.

text: not provided

text: unidentified

text: unidentified

text: Tisserant, R.P.C. s.n. (K); K001390826

text: Urochloa reticulata


text: Royal Botanic Gardens, Kew

text: public

text: Pawek, J.

text: not provided

text: Urochloa subulifolia

text: Urochloa subulifolia

text: Pawek, J. 7614 (K); K001390823

text: Urochloa subulifolia


text: IGC

text: public

text: house mouse

characteristic: common name

text: Hep74.3a replicate 1 EL repliseq early-S fraction (1 of 2)

text: missing: lab stock

text: Mus musculus

text: Mus musculus


text: IGC

text: public

text: house mouse

text: Hep74.3a replicate 1 EL repliseq late-S fraction (2 of 2)

characteristic: description

text: missing: lab stock

text: Mus musculus

text: Mus musculus


text: IGC

text: public

text: house mouse

text: Hep74.3a replicate 2 EL repliseq early-S fraction (1 of 2)

text: missing: lab stock

text: Mus musculus

text: Mus musculus

characteristic: strain


text: IGC

text: public

text: house mouse

text: Hep74.3a replicate 2 EL repliseq late-S fraction (2 of 2)

text: missing: lab stock

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF BERGEN

text: public

unit: m

characteristic: depth

text: Ridge ice above void

characteristic: environment (biome)

text: Ridge

characteristic: environment (feature)

text: Ice

characteristic: environment (material)

text: Ice

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arctic Ocean

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: EukA7F, Euk570R

characteristic: pcr primers

text: HAVOC-winter-ridge-samples

characteristic: project name

unit: l

characteristic: sample volume or weight for dna extraction

text: marine metagenome

text: MiSeq

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ridge ice below void

text: Ridge

text: Ice

text: Ice

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Arctic Ocean

text: metagenome

text: marine metagenome

characteristic: organism

text: EukA7F, Euk570R

text: HAVOC-winter-ridge-samples

text: marine metagenome

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

characteristic: depth

characteristic: description

text: Ridge void water

characteristic: environment (biome)

text: Ridge

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arctic Ocean

text: metagenome

text: marine metagenome

text: EukA7F, Euk570R

text: HAVOC-winter-ridge-samples

text: marine metagenome

text: MiSeq


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: Second year ice

text: Level ice

text: Ice

text: Ice

text: Arctic Ocean

text: Arctic Ocean

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: EukA7F, Euk570R

characteristic: pcr primers

text: HAVOC-winter-ridge-samples

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: marine metagenome

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

characteristic: description

text: ROV net tow (30 �m mesh size)

text: Net-tow

text: water

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Arctic Ocean

text: metagenome

text: marine metagenome

characteristic: organism

text: EukA7F, Euk570R

text: HAVOC-winter-ridge-samples

text: marine metagenome

text: MiSeq

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

text: public

text: First year ice

characteristic: environment (biome)

text: Level ice

characteristic: environment (feature)

text: Ice

characteristic: environment (material)

text: Ice

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arctic Ocean

text: metagenome

text: marine metagenome

text: EukA7F, Euk570R

text: HAVOC-winter-ridge-samples

text: marine metagenome

text: MiSeq


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sea_water_sample_20m_Arctic_Ocean_february

text: Ocean surface

text: Sea water

text: water

text: water

text: Arctic Ocean

text: Arctic Ocean

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: EukA7F, Euk570R

characteristic: pcr primers

text: HAVOC-winter-ridge-samples

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: marine metagenome

text: MiSeq

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Sea_water_sample_1000m_Arctic_Ocean_february

characteristic: description

text: Deep Ocean

text: Sea water

text: water

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Arctic Ocean

text: metagenome

text: marine metagenome

characteristic: organism

text: EukA7F, Euk570R

text: HAVOC-winter-ridge-samples

text: marine metagenome

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Ridge ice above void

characteristic: environment (biome)

text: Ridge

characteristic: environment (feature)

text: Ice

characteristic: environment (material)

text: Ice

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arctic Ocean

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: HAVOC-winter-ridge-samples

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

text: public

characteristic: SRA accession

text: Ridge ice below void

text: Ridge

text: Ice

text: Ice

text: Arctic Ocean

text: Arctic Ocean

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: HAVOC-winter-ridge-samples

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

characteristic: description

text: Ridge void water

text: Ridge

text: water

text: water

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Arctic Ocean

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: HAVOC-winter-ridge-samples

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

text: public

text: Second year ice

characteristic: environment (biome)

text: Level ice

characteristic: environment (feature)

text: Ice

characteristic: environment (material)

text: Ice

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arctic Ocean

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: HAVOC-winter-ridge-samples

text: unidentified prokaryotic organism

text: MiSeq


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ROV net tow (30 �m mesh size)

text: Net-tow

text: water

text: water

text: Arctic Ocean

text: Arctic Ocean

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: HAVOC-winter-ridge-samples

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

characteristic: description

text: First year ice

text: Level ice

text: Ice

text: Ice

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Arctic Ocean

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: HAVOC-winter-ridge-samples

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Ocean surface

characteristic: environment (biome)

text: Sea water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arctic Ocean

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: HAVOC-winter-ridge-samples

text: unidentified prokaryotic organism

text: MiSeq


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

text: public

characteristic: SRA accession

text: Deep Ocean

text: Sea water

text: water

text: water

text: Arctic Ocean

text: Arctic Ocean

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: HAVOC-winter-ridge-samples

characteristic: project name

characteristic: sample volume or weight for dna extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method


text: Finnish Institute for Health and Welfare

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Finland

characteristic: geographic location (country and/or sea)

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: L. monocytogenes

characteristic: title


text: CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQU

text: public

text: RNAseq from abdomen of 20 females

characteristic: description

text: Nymph

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV+

characteristic: strain

text: Kobodo Nymph 1


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: RNAseq from abdomen of 20 females

text: Nymph

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV+

text: Kobodo Nymph 2


text: public

characteristic: SRA accession

text: RNAseq from abdomen of 20 females

text: Nymph

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV+

text: Kobodo Nymph 3


text: public

text: RNAseq from abdomen of 20 females

text: Adult

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV+

text: Kobodo Adult 1


text: public

text: RNAseq from abdomen of 20 females

text: Adult

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV+

text: Kobodo Adult 2


text: public

text: RNAseq from abdomen of 20 females

text: Adult

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV+

text: Kobodo Adult 3


text: public

text: RNAseq from abdomen of 20 females

text: Nymph

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV-

text: Makindu Nymph 1


text: public

text: RNAseq from abdomen of 20 females

text: Nymph

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV-

text: Makindu Nymph 2


text: public

text: RNAseq from abdomen of 20 females

text: Nymph

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV-

text: Makindu Nymph 3


text: public

text: RNAseq from abdomen of 20 females

text: Adult

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV-

text: Makindu Adult 1


text: public

text: RNAseq from abdomen of 20 females

text: Adult

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV-

text: Makindu Adult 2


text: public

text: RNAseq from abdomen of 20 females

text: Adult

text: Kenya

text: Cotesia typhae

text: Cotesia typhae

text: CtV-

text: Makindu Adult 3


text: public

text: Mediterranean corn borer

characteristic: common name

text: RNAseq from hemolymph of 6 caterpillars parasitized by C. typhae

text: Kenya

text: Sesamia nonagrioides

text: CtV+

text: Sesamia nonagrioides

text: hemolymph


text: public

text: Mediterranean corn borer

text: France

text: Sesamia nonagrioides

text: CtV+

text: Sesamia nonagrioides

text: hemolymph


text: public

text: Mediterranean corn borer

text: Kenya

text: Sesamia nonagrioides

text: CtV-

text: Sesamia nonagrioides

text: hemolymph


text: public

text: Mediterranean corn borer

text: France

text: Sesamia nonagrioides

text: CtV-

text: Sesamia nonagrioides

text: hemolymph


text: public

text: Mediterranean corn borer

text: RNAseq from hemolymph of 6 caterpillars

text: Kenya

text: Sesamia nonagrioides

text: Sesamia nonagrioides

text: unrelevent

text: hemolymph

text: T/K


text: public

text: Mediterranean corn borer

text: RNAseq from hemolymph of 6 caterpillars

text: France

text: Sesamia nonagrioides

text: Sesamia nonagrioides

text: unrelevent

text: hemolymph

text: T/F


text: The BioArte Ltd

text: public

text: human nasal swab

text: Malta

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome


text: The BioArte Ltd

text: public

text: human nasal swab

text: Malta

text: Severe acute respiratory syndrome coronavirus 2


text: UNIVERSITY OF COLOGNE

text: public

text: Germany

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: UNIVERSITY OF COLOGNE

text: public

text: Germany

text: Homo sapiens

characteristic: host

text: Yes

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: UNIVERSITY OF COLOGNE

text: public

text: E. coli

text: Germany

text: Homo sapiens

text: Yes

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF COLOGNE

text: public

text: Germany

text: Homo sapiens

text: Yes

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Germany

text: Homo sapiens

text: Yes

text: Enterobacter cloacae

text: Enterobacter cloacae


text: UNIVERSITY OF COLOGNE

text: public

text: Germany

text: Homo sapiens

text: Yes

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF COLOGNE

text: public

text: Germany

text: Homo sapiens

text: Yes

text: Proteus mirabilis

text: Proteus mirabilis


text: UNIVERSITY OF COLOGNE

text: public

text: Germany

text: Homo sapiens

text: Yes

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF SZEGED

text: public

text: Top strand: 5'-TTTTTTTTCCTGTACTTCGTTCAGTTACGTATTGCT-3' / Bottom strand: 5'-ACGTAACTGAACGAAGTACAGG-3'

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

text: dog

text: Dog stool sample of Toti

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 13 years

characteristic: host age

text: stool

characteristic: host body product

text: Hungarian herding terrier: Pumi

characteristic: host common name

text: omnivore

characteristic: host diet

text: Harsanyi-Tekergo Bator

characteristic: host family relationship

text: Canis lupus familiaris

characteristic: host scientific name

text: male

characteristic: host sex

text: not applicable

characteristic: host subject id

text: cross-breeding of Hungarian Puli with French and German herding dogs originated from 17. century

characteristic: host subspecific genetic lineage

characteristic: host taxid

text: Native Barcoding Kit 24 V14 (SQK-NBD114.24)

characteristic: library construction method

text: not provided

characteristic: library reads sequenced

text: ligation based

characteristic: library screening strategy

text: not provided

characteristic: library size

text: Szeged

characteristic: local environmental context

text: CACAAAGACACCGACAACTTTCTT

characteristic: multiplex identifiers

text: LongAmp Taq 2X Master Mix

characteristic: nucleic acid amplification

text: PureLink Microbiome DNA Purification Kit, Invitrogen

characteristic: nucleic acid extraction

text: Canis lupus familiaris

text: not collected

characteristic: organism count

text: no pcr

characteristic: pcr conditions

text: not applicable

characteristic: pcr primers

text: Ultra-deep, hybrid metagenomic sequencing of canine gut microbiome

characteristic: project name

text: n.a

characteristic: sample storage duration

characteristic: sample storage temperature

text: Canis lupus familiaris

text: LongQC

characteristic: sequence quality check

text: Oxford Nanopore, SQK-NBD114.24

text: whole genome

characteristic: target gene

text: not applicable

characteristic: target subfragment

characteristic: temperature


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

characteristic: collection date

text: dog

characteristic: common name

text: Dog stool sample of Toti

characteristic: description

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 13 years

characteristic: host age

text: stool

characteristic: host body product

text: Hungarian herding terrier: Pumi

characteristic: host common name

text: omnivore

characteristic: host diet

text: Harsanyi-Tekergo Bator

characteristic: host family relationship

text: Canis lupus familiaris

characteristic: host scientific name

text: male

characteristic: host sex

text: not applicable

characteristic: host subject id

characteristic: host subspecific genetic lineage

characteristic: host taxid

characteristic: library construction method

text: not provided

characteristic: library reads sequenced

text: ligation based

text: not provided

text: Szeged

text: ACAGACGACTACAAACGGAATCGA

text: LongAmp Taq 2X Master Mix

text: Canis lupus familiaris

characteristic: organism

text: not collected

text: no pcr

text: not applicable

text: n.a

text: Canis lupus familiaris

text: LongQC

text: Oxford Nanopore, SQK-NBD114.24

characteristic: sequencing method

text: whole genome

text: not applicable

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

characteristic: collection date

text: dog

characteristic: common name

text: Dog stool sample of Toti

characteristic: description

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: 13 years

text: stool

text: Hungarian herding terrier: Pumi

text: omnivore

text: Harsanyi-Tekergo Bator

text: Canis lupus familiaris

text: male

text: not applicable

text: not provided

text: ligation based

characteristic: library screening strategy

text: not provided

characteristic: library size

text: Szeged

characteristic: local environmental context

text: CCTGGTAACTGGGACACAAGACTC

characteristic: multiplex identifiers

text: LongAmp Taq 2X Master Mix

characteristic: nucleic acid amplification

characteristic: nucleic acid extraction

text: Canis lupus familiaris

text: not collected

characteristic: organism count

text: no pcr

characteristic: pcr conditions

text: not applicable

characteristic: pcr primers

characteristic: project name

text: n.a

characteristic: sample storage duration

characteristic: sample storage temperature

text: Canis lupus familiaris

text: LongQC

characteristic: sequence quality check

text: Oxford Nanopore, SQK-NBD114.24

text: whole genome

characteristic: target gene

text: not applicable

characteristic: target subfragment

characteristic: temperature


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

characteristic: collection date

text: dog

characteristic: common name

text: Dog stool sample of Toti

characteristic: description

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 13 years

characteristic: host age

text: stool

characteristic: host body product

text: Hungarian herding terrier: Pumi

characteristic: host common name

text: omnivore

characteristic: host diet

text: Harsanyi-Tekergo Bator

characteristic: host family relationship

text: Canis lupus familiaris

characteristic: host scientific name

text: male

characteristic: host sex

text: not applicable

characteristic: host subject id

characteristic: host subspecific genetic lineage

characteristic: host taxid

characteristic: library construction method

text: not provided

characteristic: library reads sequenced

text: ligation based

text: not provided

text: Szeged

text: TAGGGAAACACGATAGAATCCGAA

text: LongAmp Taq 2X Master Mix

text: Canis lupus familiaris

characteristic: organism

text: not collected

text: no pcr

text: not applicable

text: n.a

text: Canis lupus familiaris

text: LongQC

text: Oxford Nanopore, SQK-NBD114.24

characteristic: sequencing method

text: whole genome

text: not applicable

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

characteristic: collection date

text: dog

characteristic: common name

text: Dog stool sample of Toti

characteristic: description

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: 13 years

text: stool

text: Hungarian herding terrier: Pumi

text: omnivore

text: Harsanyi-Tekergo Bator

text: Canis lupus familiaris

text: male

text: not applicable

text: not provided

text: ligation based

characteristic: library screening strategy

text: not provided

characteristic: library size

text: Szeged

characteristic: local environmental context

text: AAGGTTACACAAACCCTGGACAAG

characteristic: multiplex identifiers

text: LongAmp Taq 2X Master Mix

characteristic: nucleic acid amplification

text: Quick-DNA HMW MagBead Kit, Zymo

characteristic: nucleic acid extraction

text: Canis lupus familiaris

text: not collected

characteristic: organism count

text: no pcr

characteristic: pcr conditions

text: not applicable

characteristic: pcr primers

characteristic: project name

text: n.a

characteristic: sample storage duration

characteristic: sample storage temperature

text: Canis lupus familiaris

text: LongQC

characteristic: sequence quality check

text: Oxford Nanopore, SQK-NBD114.24

text: whole genome

characteristic: target gene

text: not applicable

characteristic: target subfragment

characteristic: temperature


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

characteristic: collection date

text: dog

characteristic: common name

text: Dog stool sample of Toti

characteristic: description

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 13 years

characteristic: host age

text: stool

characteristic: host body product

text: Hungarian herding terrier: Pumi

characteristic: host common name

text: omnivore

characteristic: host diet

text: Harsanyi-Tekergo Bator

characteristic: host family relationship

text: Canis lupus familiaris

characteristic: host scientific name

text: male

characteristic: host sex

text: not applicable

characteristic: host subject id

characteristic: host subspecific genetic lineage

characteristic: host taxid

characteristic: library construction method

text: not provided

characteristic: library reads sequenced

text: ligation based

text: not provided

text: Szeged

text: GACTACTTTCTGCCTTTGCGAGAA

text: LongAmp Taq 2X Master Mix

text: Quick-DNA HMW MagBead Kit, Zymo

text: Canis lupus familiaris

characteristic: organism

text: not collected

text: no pcr

text: not applicable

text: n.a

text: Canis lupus familiaris

text: LongQC

text: Oxford Nanopore, SQK-NBD114.24

characteristic: sequencing method

text: whole genome

text: not applicable

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BACMIX_minion_v1_9_20230623_zymo_magbead_NZ1

characteristic: Submitter Id

text: 16SFw 5' - ATCGCCTACCGTGAC - barcode - AGAGTTTGATCMTGGCTCAG - 3'; 16S Rev 5' - ATCGCCTACCGTGAC - barcode - CGGTTACCTTGTTACGACTT - 3'

characteristic: adapters

text: not applicable

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

text: not collected

characteristic: collection date

text: ZymoBIOMICS Microbial Community Standard

characteristic: description

text: DNA/RNA Shield (R1100-50)

characteristic: environmental medium

text: not applicable

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (latitude)

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: 16S Barcoding Kit (SQK-RAB204)

text: not provided

text: ligation based

characteristic: library screening strategy

text: not provided

characteristic: library size

text: not applicable

characteristic: local environmental context

text: AACTAGGCACAGCGAGTCTTGGTT

characteristic: multiplex identifiers

text: LongAmp Taq 2X Master Mix

characteristic: nucleic acid amplification

text: ZymoBIOMICS 96 MagBead DNA Kit, Zymo

characteristic: nucleic acid extraction

text: gut metagenome

characteristic: organism count

text: Initial denaturation 1 min 95 °C (1 cycle); Denaturation 20 secs 95 °C (25 cycles); Annealing 30 secs 55 °C (25 cycles); Extension 2 mins 65 °C (25 cycles); Final extension 5 mins 65 °C (1 cycle)

characteristic: pcr conditions

text: 27F 5'-AGAGTTTGATCCTGGCTCAG-3'; 1492R 5'-GGTTACCTTGTTACGACTT-3'

characteristic: pcr primers

characteristic: project name

characteristic: sample storage duration

characteristic: sample storage temperature

text: gut metagenome

text: LongQC

characteristic: sequence quality check

text: Oxford Nanopore, SQK-RAB204

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BACMIX_minion_v1_9_20230623_zymo_magbead_NZ2

characteristic: Submitter Id

characteristic: adapters

text: not applicable

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

text: not collected

characteristic: collection date

characteristic: description

text: DNA/RNA Shield (R1100-50)

characteristic: environmental medium

text: not applicable

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (latitude)

text: not applicable

characteristic: geographic location (longitude)

text: not applicable

characteristic: host age

text: not applicable

characteristic: host body product

text: not applicable

characteristic: host common name

text: not applicable

characteristic: host diet

text: not applicable

characteristic: host family relationship

text: not applicable

characteristic: host scientific name

text: not applicable

characteristic: host sex

text: not applicable

characteristic: host subject id

text: not applicable

characteristic: host subspecific genetic lineage

text: not applicable

characteristic: host taxid

text: 16S Barcoding Kit (SQK-RAB204)

characteristic: library construction method

text: not provided

characteristic: library reads sequenced

text: ligation based

text: not provided

text: not applicable

text: AAGCGTTGAAACCTTTGTCCTCTC

text: LongAmp Taq 2X Master Mix

text: ZymoBIOMICS 96 MagBead DNA Kit, Zymo

text: gut metagenome

characteristic: organism

text: gut metagenome

text: LongQC

text: Oxford Nanopore, SQK-RAB204

characteristic: sequencing method

text: 16S rRNA

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BACMIX_minion_v1_9_20230623_zymo_magbead_NZ3

characteristic: Submitter Id

characteristic: adapters

text: not applicable

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

text: not collected

characteristic: collection date

characteristic: description

text: DNA/RNA Shield (R1100-50)

characteristic: environmental medium

text: not applicable

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (latitude)

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: 16S Barcoding Kit (SQK-RAB204)

text: not provided

text: ligation based

characteristic: library screening strategy

text: not provided

characteristic: library size

text: not applicable

characteristic: local environmental context

text: GTTTCATCTATCGGAGGGAATGGA

characteristic: multiplex identifiers

text: LongAmp Taq 2X Master Mix

characteristic: nucleic acid amplification

text: ZymoBIOMICS 96 MagBead DNA Kit, Zymo

characteristic: nucleic acid extraction

text: gut metagenome

characteristic: organism count

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage duration

characteristic: sample storage temperature

text: gut metagenome

text: LongQC

characteristic: sequence quality check

text: Oxford Nanopore, SQK-RAB204

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: temperature


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: toti_illumina_novaseq_WGS_20240129_zymo_magbead_R1

characteristic: Submitter Id

text: AGATCGGAAGAG

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

characteristic: collection date

text: dog

characteristic: common name

text: Dog stool sample of Toti

characteristic: description

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 14 years

characteristic: host age

text: stool

characteristic: host body product

text: Hungarian herding terrier: Pumi

characteristic: host common name

text: omnivore

characteristic: host diet

text: Harsanyi-Tekergo Bator

characteristic: host family relationship

text: Canis lupus familiaris

characteristic: host scientific name

text: male

characteristic: host sex

text: not applicable

characteristic: host subject id

characteristic: host subspecific genetic lineage

characteristic: host taxid

text: IDT xGen DNA Lib Prep Kit

characteristic: library construction method

text: not provided

characteristic: library reads sequenced

text: pcr based

text: not provided

text: Szeged

text: missing: third party data

text: not provided

text: ZymoBIOMICS 96 MagBead DNA Kit, Zymo

text: Canis lupus familiaris

characteristic: organism

text: not collected

text: missing: third party data

text: not applicable

text: n.a

text: Canis lupus familiaris

text: FastQC

text: Illumina, IDT xGen DNA Lib Prep Kit

characteristic: sequencing method

text: whole genome

text: not applicable

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: toti_illumina_novaseq_WGS_20240129_zymo_magbead_R2

characteristic: Submitter Id

text: AGATCGGAAGAG

characteristic: adapters

text: Csongrad county

characteristic: broad-scale environmental context

text: minitax

characteristic: chimera check software

characteristic: collection date

text: dog

characteristic: common name

text: Dog stool sample of Toti

characteristic: description

text: no

characteristic: environmental medium

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: 14 years

text: stool

text: Hungarian herding terrier: Pumi

text: omnivore

text: Harsanyi-Tekergo Bator

text: Canis lupus familiaris

text: male

text: not applicable

text: IDT xGen DNA Lib Prep Kit

text: not provided

text: pcr based

characteristic: library screening strategy

text: not provided

characteristic: library size

text: Szeged

characteristic: local environmental context

text: missing: third party data

characteristic: multiplex identifiers

text: not provided

characteristic: nucleic acid amplification

text: ZymoBIOMICS 96 MagBead DNA Kit, Zymo

characteristic: nucleic acid extraction

text: Canis lupus familiaris

text: not collected

characteristic: organism count

text: missing: third party data

characteristic: pcr conditions

text: not applicable

characteristic: pcr primers

characteristic: project name

text: n.a

characteristic: sample storage duration

characteristic: sample storage temperature

text: Canis lupus familiaris

text: FastQC

characteristic: sequence quality check

text: Illumina, IDT xGen DNA Lib Prep Kit

text: whole genome

characteristic: target gene

text: not applicable

characteristic: target subfragment

characteristic: temperature


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Basel

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: from the controls Experiment

characteristic: description

text: Switzerland

characteristic: geographic location (country and/or sea)

text: synthetic metagenome

characteristic: organism

text: synthetic metagenome

characteristic: title


text: University of Basel

text: public

text: from the Mice Experiment

text: Switzerland

text: mouse gut metagenome

text: mouse gut metagenome


text: University of Basel

text: public

text: from the plant_soil Experiment

text: Switzerland

text: plant metagenome

text: plant metagenome


text: University of Basel

text: public

text: from the lake_sedi Experiment

text: Switzerland

text: sediment metagenome

text: sediment metagenome


text: University of Basel

text: public

text: from the plant_soil Experiment

text: Switzerland

text: soil metagenome

text: soil metagenome


text: University of Basel

text: public

text: from the lake_sedi Experiment

text: Switzerland

text: lake water metagenome

text: lake water metagenome


text: University of Edinburgh

text: public

text: Air metagenome collected using an air sampler

text: United Kingdom

text: air metagenome

text: air metagenome

text: Air metagenome from Barn A1


text: University of Edinburgh

text: public

text: Pig oral fluid collected using a cotton rope

text: United Kingdom

text: Sus scrofa

characteristic: host scientific name

text: pig metagenome

text: pig metagenome

text: Pig oral fluid metagenome Barn A1


text: University of Edinburgh

text: public

text: United Kingdom

text: air metagenome

text: air metagenome

text: Air metagenome from Barn A2


text: University of Edinburgh

text: public

text: United Kingdom

text: Sus scrofa

text: pig metagenome

text: pig metagenome

text: Pig oral fluid metagenome A2


text: University of Edinburgh

text: public

text: United Kingdom

text: air metagenome

text: air metagenome

text: Air metagenome from Barn B1


text: University of Edinburgh

text: public

text: United Kingdom

text: Sus scrofa

text: pig metagenome

text: pig metagenome

text: Pig oral fluid metagenome B1


text: University of Edinburgh

text: public

text: United Kingdom

text: air metagenome

text: air metagenome

text: Air metagenome from Barn B2


text: University of Edinburgh

text: public

text: United Kingdom

text: Sus scrofa

text: pig metagenome

text: pig metagenome

text: Pig oral fluid metagenome B2


characteristic: GPSC

text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:877-156458

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: isolate

text: UNKNOWN

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: 10754X103_140620_D00294_0106_AC4FB4ANXX_6


characteristic: ENA first public

text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:877-156459

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X104_140620_D00294_0106_AC4FB4ANXX_6


characteristic: ENA-CHECKLIST

text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:877-156460

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: PLEURAL FLUID

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X109_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:877-156461

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: JOINT FLUID

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X113_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:877-156462

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: DEEP RESPIRATORY

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X115_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:877-156463

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X124_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:877-156464

characteristic: Submitter Id

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X130_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156465

characteristic: collection date

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X142_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156466

text: bacterial isolate

characteristic: description

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: EYE

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X163_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156467

text: bacterial isolate

text: USA

characteristic: geographic location (country and/or sea)

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: DEEP RESPIRATORY

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X167_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156468

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: CSF

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: 10754X178_140620_D00294_0106_AC4FB4ANXX_6


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156469

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X46_140620_D00294_0106_AC4FB4ANXX_5

characteristic: title


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156470

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X48_140620_D00294_0106_AC4FB4ANXX_5


characteristic: GPSC

text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156471

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X69_140620_D00294_0106_AC4FB4ANXX_5


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156472

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X83_140620_D00294_0106_AC4FB4ANXX_5


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156473

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

characteristic: host health state

text: Homo sapiens

text: PLEURAL FLUID

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156474

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

characteristic: isolate

text: MASTOID

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X91_140620_D00294_0106_AC4FB4ANXX_5


text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156475

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: 10754X94_140620_D00294_0106_AC4FB4ANXX_5


characteristic: ENA first public

text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156476

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: DEEP RESPIRATORY

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10754X99_140620_D00294_0106_AC4FB4ANXX_6


characteristic: ENA-CHECKLIST

text: WELLCOME SANGER INSTITUTE

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156477

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10847X18_140926_D00294_0134_AC4P96ANXX_5


text: WELLCOME SANGER INSTITUTE

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-16-05-2024-15:24:49:878-156478

text: bacterial isolate

text: USA

text: Utah: Salt Lake City

text: diseased

text: Homo sapiens

text: BLOOD

text: 40.76843552540423, -111.83924311484299

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 10847X25_140926_D00294_0134_AC4P96ANXX_5


text: PNRI

text: public

characteristic: INSDC status

text: brewer's yeast

characteristic: common name

text: Low coverage WGS of CYClones segregants

text: USA

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Centre for Discovery Brain Sciences, University of Edinburgh

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: IgG

characteristic: antibody

text: ArrayExpress

characteristic: broker name

text: not collected

text: Norway rat

text: Protocols: Primary cell cultures of cortical neurons and cortical astrocytes were generated from tissue collected from embryonic day 17.5 CD1 mice and embryonic day 20.5 Sprague-Dawley rats. Chromatin immunoprecipitation was performed with the SimpleChIP® Plus Enzymatic ChIP Kit (Magnetic Beads) (Cell Signalling Technology, #9005) according to the manufacturer’s protocol. Library preparation for the samples were performed using NEBNext Ultra II DNA Library Prep Kit for Illumina (New England Biolabs Inc, #E7645S) according to the manufacturer’s protocol.

text: embryo stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: coculture of rat neurons and mouse astrocytes

characteristic: growth condition

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

characteristic: organism part

text: Rattus norvegicus

text: not applicable

characteristic: sex

text: Sprague-Dawley

characteristic: strain


text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: Norway rat

characteristic: description

text: embryo stage

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: brain

text: Rattus norvegicus

text: not applicable

text: Sprague-Dawley

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IgG

text: ArrayExpress

text: not collected

text: Norway rat

characteristic: common name

text: embryo stage

text: wild type genotype

text: not collected

text: neuronal monoculture

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

text: Rattus norvegicus

text: not applicable

text: Sprague-Dawley

text: PN-In


text: public

characteristic: Submitter Id

characteristic: age

characteristic: antibody

text: ArrayExpress

characteristic: broker name

text: not collected

text: Norway rat

text: embryo stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: neuronal monoculture

text: not applicable

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

text: Rattus norvegicus

text: not applicable

text: Sprague-Dawley


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

text: Department of Clinical Microbiology, Hvidovre Hospital

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Clinical Microbiology, Vejle Sygehus

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: public

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2021-12-27

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-48639/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2022-01-03

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: public

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-92789/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2022-01-24

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2021-12-13

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-73728/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-31

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-673619/2021

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-439248/2022

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2021-05-10

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-12-07

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-345559/2022

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Department of Clinical Microbiology, Vejle Sygehus

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-285306/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Clinical Microbiology, Hvidovre Hospital

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-04-13

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2021-04-26

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-232288/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2021-10-25

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-10-18

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2022-01-03

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-47850/2020

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-02-14

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-673270/2021

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-678967/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2021-12-27

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2022-01-24

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Department of Clinical Microbiology, Hvidovre Hospital

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2021-12-13

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2022-01-17

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-673424/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-681667/2022

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-35946/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-168509/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-04-13

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-285108/2021

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2021-11-29

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Department of Clinical Microbiology, Vejle Sygehus

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2022-01-03

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-03-28

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2020-04-06

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Department of Clinical Microbiology, Hvidovre Hospital

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-116405/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2021-01-04

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-127264/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-680289/2022

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-111903/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-122644/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2022-04-04

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-18786/2020

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Human

text: n_infections=2,last_infection_date=2020-03-30

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Clinical Microbiology, Vejle Sygehus

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-12-21

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2022-02-07

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Human

text: n_infections=2,last_infection_date=2021-12-20

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2