status: PUBLIC

text: Staphylococcus aureus

tag: attribute

characteristic: ArrayExpress-SPECIES

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus aureus

characteristic: common name

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: title


text: Staphylococcus pseudintermedius

text: SC

text: public

text: Staphylococcus pseudintermedius

text: Staphylococcus pseudintermedius

text: Staphylococcus pseudintermedius


text: Staphylococcus condimenti

text: SC

text: public

text: Staphylococcus condimenti

text: Staphylococcus condimenti

text: Staphylococcus condimenti


text: Pseudomonas aeruginosa

text: SC

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Eurac Research

text: public

tag: Namespace:Eurac Research

text: Eurac

characteristic: collection date

text: human

text: Late iron age human individual excavated in Switzerland

characteristic: description

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Neuchâtel, Cornaux/les Sauges

characteristic: geographic location (region and locality)

text: 47.0523; 7.0228

text: Homo sapiens

text: Homo sapiens

text: XY

characteristic: sex

text: bone, petrous part


text: Eurac Research

text: public

text: Eurac

text: human

text: Switzerland

text: Neuchâtel, Cornaux/les Sauges

text: 47.0523; 7.0228

text: Homo sapiens

text: Homo sapiens

text: XY

text: bone, middle ear bones


text: Eurac Research

text: public

text: Eurac

text: human

text: Switzerland

text: Neuchâtel, Cornaux/les Sauges

text: 47.0523; 7.0228

text: Homo sapiens

text: Homo sapiens

text: XX

text: bone, petrous part


text: LSHTM

text: public

text: Throat swab

text: United Kingdom

text: Neisseria sp.

text: Neisseria sp.


text: MPIPZ

text: public

text: ArrayExpress

characteristic: broker name

text: not collected

text: thale cress

text: Protocols: Leaves were removed from plants and stored at -80 C until DNA extraction Greenhouse supplemented with additional light. Plants grown in the greenhouse (16 h day/8 h night) for 3 weeks NucleoMag Plant Kit (Macherey and Nagel, P/O 744400.4) on a robotic device (KingFisher, Thermo) TPase-based DNA library (>95 samples)

text: sporophyte vegetative stage

characteristic: developmental stage

text: Col x Ler

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not collected

text: thale cress

text: sporophyte vegetative stage

text: Col x Ler

text: mutant

text: not collected

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana


text: IRTA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: muskmelon

characteristic: common name

text: RNA-seq of Vedrantais flesh at 15 days after pollination

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cucumis melo

characteristic: organism

characteristic: plant developmental stage

text: Coconut fiber

characteristic: plant growth medium

characteristic: plant structure

text: Cucumis melo

text: Vedrantais flesh at 15 DAP

characteristic: title


characteristic: ENA first public

text: IRTA

text: public

text: muskmelon

text: RNA-seq of Vedrantais flesh at 25 days after pollination

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: Vedrantais flesh at 25 DAP


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IRTA

characteristic: INSDC center name

text: public

text: muskmelon

text: RNA-seq of Vedrantais flesh at 30 days after pollination

text: Spain

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: Vedrantais flesh at 30 DAP


text: IRTA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: muskmelon

text: RNA-seq of Vedrantais flesh at 36 days after pollination

text: Spain

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: Vedrantais flesh at 36 DAP


text: IRTA

text: public

characteristic: Submitter Id

characteristic: collection date

text: muskmelon

characteristic: common name

text: RNA-seq of Piel de Sapo flesh at 15 days after pollination

text: Spain

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: Piel de Sapo flesh at 15 DAP


text: IRTA

text: public

text: muskmelon

text: RNA-seq of Piel de Sapo flesh at 25 days after pollination

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cucumis melo

characteristic: organism

text: Coconut fiber

text: Cucumis melo

text: Piel de Sapo flesh at 25 DAP


text: IRTA

text: public

text: muskmelon

text: RNA-seq of Piel de Sapo flesh at 30 days after pollination

text: Spain

text: Cucumis melo

characteristic: plant developmental stage

text: Coconut fiber

characteristic: plant growth medium

characteristic: plant structure

text: Cucumis melo

text: Piel de Sapo flesh at 30 DAP


characteristic: ENA first public

text: IRTA

text: public

text: muskmelon

text: RNA-seq of Piel de Sapo flesh at 56 days after pollination

characteristic: description

text: Spain

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: Piel de Sapo flesh at 56 DAP

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IRTA

text: public

text: muskmelon

text: DAP-seq of ERF024 in Vedrantais genome

text: Spain

characteristic: geographic location (country and/or sea)

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: ERF024 binding to Vedrantais genome


text: IRTA

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: muskmelon

text: DAP-seq of ERF024 in Piel de Sapo genome

text: Spain

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: ERF024 binding to Piel de Sapo genome


text: IRTA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: muskmelon

text: DAP-seq of input in Piel de Sapo genome

text: Spain

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: Input in Piel de Sapo genome


text: IRTA

text: public

text: muskmelon

characteristic: common name

text: DAP-seq of input in Vedrantais genome

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: Input in Vedrantais genome


text: IRTA

text: public

text: muskmelon

text: Genome sequencing of R14 recombinant family

text: Spain

text: Cucumis melo

characteristic: organism

characteristic: plant developmental stage

text: Coconut fiber

characteristic: plant growth medium

text: Cucumis melo

text: R14 genome


characteristic: ENA first public

text: IRTA

text: public

text: muskmelon

text: Genome sequencing of R15 recombinant family

characteristic: description

text: Spain

text: Cucumis melo

text: Coconut fiber

characteristic: plant structure

text: Cucumis melo

text: R15 genome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IRTA

text: public

text: muskmelon

text: Genome sequencing of R68 recombinant family

text: Spain

text: Cucumis melo

text: Coconut fiber

text: Cucumis melo

text: R68 genome

characteristic: title


text: anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

text: public

text: not provided

text: African malaria mosquito

text: not provided

characteristic: geographic location (country and/or sea)

text: Anopheles gambiae

text: Anopheles gambiae


text: MPUSP

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CmR

text: Max Planck Unit for the Science of Pathogens

text: THY

text: S. pyogenes SF370 was transformed with Alw44I-linearized plasmid pSpy0C2, and transformants were selected on TSA plates with 5% sheep blood and 20 �g/mL chloramphenicol. A single colony was grown in THY without antibiotic and flash-frozen in liquid nitrogen in THY with 20% glycerol. The strain was then streaked on a TSA plate with 5% sheep blood, grown overnight in THY and finally grown to early stationary growth phase in fresh THY medium. Cells were pelleted, washed with PBS and stored at -80 degree C.

characteristic: genotype

text: Germany

text: Streptococcus pyogenes M1 GAS

text: Streptococcus pyogenes M1 GAS

characteristic: serotype (required for a seropositive sample)

characteristic: strain

text: S. pyogenes SF370 transformed with pSpy0C2, clone 1


text: MPUSP

text: public

text: CmR

characteristic: collection date

text: THY

text: Germany

text: Streptococcus pyogenes M1 GAS

characteristic: organism

text: Streptococcus pyogenes M1 GAS

text: S. pyogenes SF370 transformed with pSpy0C2, clone 2


characteristic: ENA first public

text: MPUSP

text: public

text: CmR

text: THY

text: S. pyogenes SF370 was transformed with Alw44I-linearized plasmid pSpy0C4, and transformants were selected on TSA plates with 5% sheep blood and 20 �g/mL chloramphenicol. A single colony was grown in THY without antibiotic and flash-frozen in liquid nitrogen in THY with 20% glycerol. The strain was then streaked on a TSA plate with 5% sheep blood, grown overnight in THY and finally grown to early stationary growth phase in fresh THY medium. Cells were pelleted, washed with PBS and stored at -80 degree C.

text: Germany

text: Streptococcus pyogenes M1 GAS

text: Streptococcus pyogenes M1 GAS

text: S. pyogenes SF370 transformed with pSpy0C4, clone 1


text: MPUSP

text: public

text: CmR

text: THY

characteristic: description

text: Germany

text: Streptococcus pyogenes M1 GAS

text: Streptococcus pyogenes M1 GAS

text: S. pyogenes SF370 transformed with pSpy0C4, clone 2


text: MPUSP

text: public

text: KanR

text: THY

text: S. pyogenes SF370 was transformed with Alw44I-linearized plasmid pSpy0K6, and transformants were selected on TSA plates with 5% sheep blood and 300 �g/mL kanamycin. A single colony was grown in THY without antibiotic and flash-frozen in liquid nitrogen in THY with 20% glycerol. The strain was then streaked on a TSA plate with 5% sheep blood, grown overnight in THY and finally grown to early stationary growth phase in fresh THY medium. Cells were pelleted, washed with PBS and stored at -80 degree C.

text: Germany

text: Streptococcus pyogenes M1 GAS

text: Streptococcus pyogenes M1 GAS

text: S. pyogenes SF370 transformed with pSpy0K6, clone 1


text: MPUSP

text: public

text: KanR

text: THY

text: Germany

text: Streptococcus pyogenes M1 GAS

text: Streptococcus pyogenes M1 GAS

text: S. pyogenes SF370 transformed with pSpy0K6, clone 2


text: MPUSP

text: public

text: ErmR

text: THY

text: S. pyogenes SF370 was transformed with plasmid p7INT.1, and transformants were selected on TSA plates with 5% sheep blood and 3 �g/mL erythromycin. A single colony was grown in THY without antibiotic and flash-frozen in liquid nitrogen in THY with 20% glycerol. The strain was then streaked on a TSA plate with 5% sheep blood, grown overnight in THY and finally grown to early stationary growth phase in fresh THY medium. Cells were pelleted, washed with PBS and stored at -80 degree C.

text: Germany

text: Streptococcus pyogenes M1 GAS

text: Streptococcus pyogenes M1 GAS

text: S. pyogenes SF370 transformed with p7INT.1, clone 1


text: MPUSP

text: public

text: ErmR

text: THY

text: Germany

text: Streptococcus pyogenes M1 GAS

text: Streptococcus pyogenes M1 GAS

text: S. pyogenes SF370 transformed with p7INT.1, clone 2


text: University of Galway

text: public

text: Marine environment

characteristic: broad-scale environmental context

characteristic: depth

text: Seawater microbial community

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: coastal seawater

characteristic: local environmental context

text: seawater metagenome

text: AREST

characteristic: project name

text: seawater metagenome


characteristic: ENA-CHECKLIST

text: University of Galway

characteristic: INSDC center name

text: public

text: Freshwater environment

text: Freshwater microbial community

text: Ireland

characteristic: geographic location (country and/or sea)

text: Loctic

text: freshwater metagenome

text: AREST

text: freshwater metagenome

characteristic: title


text: CeMESS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: Armelle Coeur d'Acier; Emmanuelle Jousselin

text: Sequencing of Buchnera aphidicola strain Pepopuli-3700, obligate endosymbiont of the aphid Pemphigus populi species voucher ACOE3700. Sample originates from a pool of individuals from the same population.

text: France

text: Languedoc-Roussillon, Hérault, Montferrier-sur-Lez

characteristic: geographic location (region and locality)

text: Pemphigus populi

characteristic: host scientific name

text: 43.6827 N 3.874722 E

text: Buchnera aphidicola (Pemphigus populi)

text: Buchnera aphidicola (Pemphigus populi)

text: host's whole body


characteristic: ENA first public

text: CeMESS

text: public

characteristic: collection date

text: Sequencing of Buchnera aphidicola strain Phfagi-3703, obligate endosymbiont of the aphid Phyllaphis fagi species voucher ACOE3703. Sample originates from a pool of individuals from the same population.

characteristic: description

text: France

text: Languedoc-Roussillon, Gard, Valleraugue

text: Phyllaphis fagi

text: 44.09504  N 3.551211 E

text: Buchnera aphidicola (Phyllaphis fagi)

characteristic: organism

text: Buchnera aphidicola (Phyllaphis fagi)

characteristic: strain

text: host's whole body


text: CeMESS

text: public

text: Sequencing of Buchnera aphidicola strain Taarundicolens-3697, obligate endosymbiont of the aphid Takecallis arundicolens species voucher ACOE3697. Sample originates from a pool of individuals from the same population.

text: France

text: Languedoc-Roussillon, Hérault, Brissac

text: Takecallis arundicolens

text: 43.876972 N 3.701793 E

text: Buchnera aphidicola (Takecallis arundicolens)

text: host's whole body


text: CeMESS

text: public

text: Sequencing of Buchnera aphidicola strain Teulmi-3693, obligate endosymbiont of the aphid Tetraneura ulmi species voucher ACOE3693. Sample originates from a pool of individuals from the same population.

text: France

text: Languedoc-Roussillon, Hérault, Brissac

text: Tetraneura ulmi

text: 43.87782 N 3.703014 E

text: Buchnera aphidicola (Tetraneura ulmi)

text: Buchnera aphidicola (Tetraneura ulmi)

text: host's whole body


14INRCT07 DNA

text: Max Planck Institute for Biology Tuebingen

text: public

text: 14INRCT07 DNA

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession 14INRCT07

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeds were germinated on soil and stratified in darkness at 4C for six days, after which they were transferred to long day conditions (16 h light) at 23C and 65% relative humidity under 110-140 umol m-2 s-1  light provided by Philips GreenPower TLED modules (Philips Lighting GmbH, Hamburg, Germany). To reduce starch accumulation, plants were placed into darkness for 24 h before harvesting.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: 14INRCT07 DNA


Pent-46 (2212) DNA

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pent-46 (2212) DNA

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Rosette of a single 26-days-old individual of accession Pent-46 (ecotype ID 2212)

text: USA

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: Pent-46 (2212) DNA

characteristic: title


LI-EF-011 (685) DNA

text: public

text: LI-EF-011 (685) DNA

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession LI-EF-011 (ecotype ID 685)

characteristic: description

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: LI-EF-011 (685) DNA


characteristic: ENA first public

text: Gwangju Institute of Science and Technology

text: public

text: house mouse

text: NT+IgG

text: South Korea

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

text: house mouse

text: South Korea

text: Mus musculus

text: Mus musculus


text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: Protocols: Samples no larger than 0.5cm2 were cut from each of the 5 locations of lung (trachea, bronchi at the 2nd/3rd generation, bronchi at the 4th generation, upper left lobe parenchyma and lower left lobe parenchyma) and additional small airway. Majority of the parenchyma was removed from the airway tissues, embedded in OCT and flash frozen in dry-ice cooled isopentane at -55°C.  Haematoxylin and eosin staining was used to determine the morphology of tissue blocks, in order to choose those to proceed to Visium. Ten micron sections were then cut from the blocks onto Visium slides (10X Genomics) and processed according to the manufacturer’s protocol. Nucleic acid was extracted according to the standard protocol of the Spatial 3' v1 protocol Tissue sections were loaded onto Visium chips according to the standard protocol of the Spatial 3' v1 protocol. Dual-indexed libraries were prepared, pooled at 2.25nM and sequenced.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: upper lobe of lung

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


text: Wellcome Sanger Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bronchus

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

text: ArrayExpress

text: not collected

text: human

text: adult

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lower lobe of lung

text: Homo sapiens

text: female


text: Wellcome Sanger Institute

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bronchus

text: Homo sapiens

text: female


text: Wellcome Sanger Institute

text: public

text: 70 to 74

text: ArrayExpress

text: not collected

text: human

text: adult

text: normal

text: not collected

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: bronchus

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


text: Wellcome Sanger Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 70 to 74

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

text: adult

text: normal

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: trachea

text: Homo sapiens

text: female


text: Wellcome Sanger Institute

text: public

text: 60 to 65

text: ArrayExpress

text: not collected

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: trachea

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

text: 60 to 65

text: ArrayExpress

text: not collected

text: human

text: adult

text: normal

text: not collected

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bronchiole

text: Homo sapiens

text: male


text: Wellcome Sanger Institute

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: bronchiole

text: Homo sapiens

text: female


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: ADAM BATES

text: WSI

characteristic: collecting institution

text: truffle oak

text: United Kingdom

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Wellcome Sanger Institute

characteristic: geographic location (region and locality)

text: Parkland

characteristic: habitat

text: ADAM BATES

text: WSI

text: vegetative structure

characteristic: lifestage

text: Quercus robur

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Quercus robur

text: NOT APPLICABLE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ADAM BATES

text: WSI

characteristic: collection date

text: truffle oak

characteristic: common name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: Wellcome Sanger Institute

text: Parkland

text: ADAM BATES

text: WSI

text: vegetative structure

text: Quercus robur

characteristic: organism

text: LEAF

characteristic: sample derived from

text: Quercus robur

text: NOT APPLICABLE

text: NOT COLLECTED

text: N

characteristic: title


text: CFB

text: public

text: human

text: Negative control

characteristic: description

text: France

text: Homo sapiens

text: Homo sapiens


text: CFB

text: public

text: human

text: Positive control

text: France

text: Homo sapiens

text: Homo sapiens


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

characteristic: collecting institution

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BRITTANY | SAINT-POL-DE-LEON | PEMPOUL | LITTORAL

characteristic: geographic location (region and locality)

text: HIGH INTERTIDAL | UNDER PEBBLES

characteristic: habitat

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

characteristic: lifestage

text: Jaera albifrons

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Jaera albifrons

text: MALE

text: NOT PROVIDED

text: N


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

text: BRITTANY | CARANTEC | INIZAN | LITTORAL

text: HIGH INTERTIDAL | UNDER PEBBLES

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera forsmani

text: WHOLE ORGANISM

text: ToL

text: Jaera forsmani

text: MALE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: BRITTANY | ROSCOFF | STATION BIOLOGIQUE DE ROSCOFF

text: LABORATORY CONDITIONS

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera ischiosetosa

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Jaera ischiosetosa

text: MALE

text: NOT PROVIDED

text: N

characteristic: title


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BRITTANY | SANTEC | PRAT | LITTORAL

characteristic: geographic location (region and locality)

text: HIGH INTERTIDAL | UNDER PEBBLES

characteristic: habitat

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

characteristic: lifestage

text: Jaera ischiosetosa

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Jaera ischiosetosa

text: MALE

text: NOT PROVIDED

text: N


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

text: HIGH INTERTIDAL | UNDER PEBBLES

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera ischiosetosa

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Jaera ischiosetosa

text: MALE

text: NOT PROVIDED

text: N


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: Submitter Id

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

characteristic: collecting institution

text: France

text: BRITTANY | CARANTEC | INIZAN | LITTORAL

text: HIGH INTERTIDAL | ON ASCOPHYLLUM ALGAE

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera praehirsuta

text: WHOLE ORGANISM

text: ToL

text: Jaera praehirsuta

text: MALE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: HIGH INTERTIDAL | VENTRAL SURFACE OF SPHAEROMA SERRATUM

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera hopeana

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Jaera hopeana

text: FEMALE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

characteristic: geographic location (region and locality)

characteristic: habitat

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

characteristic: lifestage

text: Jaera hopeana

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Jaera hopeana

text: NOT COLLECTED

text: NOT PROVIDED

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

text: HIGH INTERTIDAL | UNDER PEBBLES

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera albifrons

text: WHOLE ORGANISM

characteristic: project name

characteristic: sample same as

text: Jaera albifrons

text: MALE

text: NOT PROVIDED

text: N


text: Sanger Institute

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: BRITTANY | CARANTEC | INIZAN | LITTORAL

text: HIGH INTERTIDAL | UNDER PEBBLES

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera forsmani

text: WHOLE ORGANISM

text: Jaera forsmani

text: MALE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: LABORATORY CONDITIONS

characteristic: habitat

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera ischiosetosa

characteristic: organism

text: WHOLE ORGANISM

text: Jaera ischiosetosa

text: MALE

text: NOT PROVIDED

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

text: BRITTANY | SANTEC | PRAT | LITTORAL

text: HIGH INTERTIDAL | UNDER PEBBLES

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

characteristic: lifestage

text: Jaera ischiosetosa

text: WHOLE ORGANISM

characteristic: organism part

text: Jaera ischiosetosa

text: MALE

text: NOT PROVIDED

text: N


text: Sanger Institute

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: HIGH INTERTIDAL | UNDER PEBBLES

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera ischiosetosa

text: WHOLE ORGANISM

characteristic: project name

characteristic: sample same as

text: Jaera ischiosetosa

text: MALE

characteristic: sex

text: NOT PROVIDED

text: N


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

characteristic: geographic location (longitude)

text: BRITTANY | CARANTEC | INIZAN | LITTORAL

characteristic: geographic location (region and locality)

text: HIGH INTERTIDAL | ON ASCOPHYLLUM ALGAE

characteristic: habitat

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera praehirsuta

text: WHOLE ORGANISM

text: Jaera praehirsuta

text: MALE

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: France

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

text: Jaera hopeana

characteristic: organism

text: WHOLE ORGANISM

text: Jaera hopeana

text: FEMALE

text: NOT PROVIDED

text: N

characteristic: title


text: Sanger Institute

text: Tree of Life Programme

text: public

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: THOMAS BROQUET

text: SORBONNE UNIVERSITY

text: adult

characteristic: lifestage

text: Jaera hopeana

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Jaera hopeana

text: NOT COLLECTED

text: NOT PROVIDED

text: N


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: INSTITUT PASTEUR

text: public

text: Vibrio cholerae O5

characteristic: description

text: Slovakia

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae O5


E-MTAB-14100:C Ctrl

text: Gurdon Institute, University of Cambridge

text: public

text: E-MTAB-14100:C Ctrl

text: ArrayExpress

characteristic: broker name

text: not collected

text: fruit fly

characteristic: common name

text: Protocols: To extract genomic DNA for sequencing, 10 adult males were homogenised in 500 μl of solution A buffer (0.1 M Tris-Hcl pH 7.5, 0.01 M EDTA pH 8.0, 1% SDS) and incubated for 20 min at 70°C. 70μl of 8M potassium acetate was then added to the samples and incubated for 20 min on ice. After the incubation, the samples were centrifuged for 15 min at maximum speed.  The supernatant was mixed with 250 μl of isopropanol and centrifuged for 4 min at 13,000 g. The pellet was washed with 70% ethanol and diluted in 100 μl ddH2O.  The DNA library was prepared using the Illumina DNA Prep kit (Illumina, 20018705) and index kit (Illumina, 20027213) following the manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not collected

text: not applicable

characteristic: isolate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: male

characteristic: sex

text: C Ctrl


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: not collected

text: fruit fly

text: adult

text: not collected

text: not applicable

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: male

characteristic: title


text: Shanghai Tenth People's Hospital

text: public

text: ArrayExpress

text: not collected

characteristic: collection date

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min.  Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\"adenylate, then the adaptors were ligated to the end of these 3\"adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

text: wild type genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

text: Cryptococcus neoformans

text: Cryptococcus neoformans

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans

characteristic: strain


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Shanghai Tenth People's Hospital

text: public

text: ArrayExpress

text: not collected

characteristic: description

text: adaptor

text: not collected

text: not applicable

text: Cryptococcus neoformans

text: Cryptococcus neoformans

text: whole organism

text: Cryptococcus neoformans


text: PNRI

text: public

text: brewer's yeast

characteristic: common name

text: Low coverage WGS of CYClones segregants

text: USA

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

text: Western Cape

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Panama


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Limpopo

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Muenchen


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa

text: Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

characteristic: geographic location (country and/or sea)

text: North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Limpopo

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Anatum


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Limpopo

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Bovismorbificans


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Butantan


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Virchow


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Irumu


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Virchow


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Mpumalanga

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Bovismorbificans


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Limpopo

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Haifa


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Free State

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Centre for Palaeogenetics

text: woolly mammoth

text: woolly mammoth

text: Russia

text: Mammuthus primigenius

text: Mammuthus primigenius

text: woolly mammoth


characteristic: External Id

text: Royal Botanic Garden Edinburgh

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Phang & Ngo

text: Sapling

characteristic: ecotype

text: Singapore:BTNR

text: Palaquium obovatum

text: leaf

characteristic: tissue

text: Plant sample from Palaquium obovatum

characteristic: treatment


text: Royal Botanic Garden Edinburgh

characteristic: INSDC center name

text: live

text: Plant

text: Phang & Ngo

text: Sapling

text: Singapore:BTNR

text: Palaquium obovatum

text: SING 2022-855

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

characteristic: INSDC status

text: Plant

text: Phang & Ngo

text: Sapling

text: Singapore:BTNR

text: Palaquium obovatum

text: SING 2022-856

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

characteristic: SRA accession

text: Phang & Ngo

text: Sapling

text: Singapore:BTNR

text: Palaquium obovatum

text: SING 2022-857

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang & Ngo

text: Sapling

text: Singapore:BTNR

text: Palaquium obovatum

text: SING 2022-858

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang & Ngo

text: Sapling

text: Singapore:BTNR

text: Palaquium obovatum

text: SING 2022-859

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang & Ngo

text: Sapling

text: Singapore:BTNR

text: Palaquium obovatum

text: SING 2022-860

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang & Ngo

text: Tree

text: Singapore:BTNR

text: Palaquium obovatum

text: SING 2022-861

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang

text: Tree

text: Singapore:BBNP

text: Palaquium obovatum

text: SING 2022-862

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang

text: Singapore:BBNP

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang

text: Sapling

text: Singapore:BBNP

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang

text: Tree

text: Singapore:BBNP

text: Palaquium obovatum

text: SING 2022-863

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang

text: Tree

text: Singapore:BBNP

text: Palaquium obovatum

text: SING 2022-864

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Lim

text: Tree

text: Singapore:CCNR-MacRitchie

text: Palaquium obovatum

text: SING 2022-865

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Lim

text: Singapore:CCNR-MacRitchie

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Lim

text: Sapling

text: Singapore:CCNR-MacRitchie

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang & Neo

text: Tree

text: Singapore:SBG-cultivated

text: Palaquium obovatum

text: SING 2022-866

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang & Neo

text: Singapore:SBG-cultivated

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Tan

text: Tree

text: Singapore:Sentosa

text: Palaquium obovatum

text: SING 2022-867

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Tan

text: Singapore:Sentosa

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Tan

text: Sapling

text: Singapore:Sentosa

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Tan

text: Tree

text: Singapore:Sentosa

text: Palaquium obovatum

text: SING 2022-868

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Kong, Tan & Phang

text: Tree

text: Singapore:SBG-rainforest

text: Palaquium obovatum

text: SING 2022-923

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Kong, Tan & Phang

text: Singapore:SBG-rainforest

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Kong, Tan & Phang

text: Sapling

text: Singapore:SBG-rainforest

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Sng & Phang

text: Tree

text: Singapore:SBG-rainforest

text: Palaquium obovatum

text: SING 2022-924

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Sng & Phang

text: Singapore:SBG-rainforest

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Sng & Phang

text: Sapling

text: Singapore:SBG-rainforest

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Lim & Koh

text: Tree

text: Singapore:St. John's Island

text: Palaquium obovatum

text: SING 2022-869

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Lim & Koh

text: Singapore:St. John's Island

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Lim & Koh

text: Tree

text: Singapore:St. John's Island

text: Palaquium obovatum

text: SING 2022-870

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo, Ali, Tan & Hoo

text: Tree

text: Singapore:Ubin

text: Palaquium obovatum

text: SING 2022-920

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo, Ali, Tan & Hoo

text: Singapore:Ubin

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo, Ali, Tan & Hoo

text: Tree

text: Singapore:Ubin

text: Palaquium obovatum

text: SING 2022-921

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo, Ali, Tan & Hoo

text: Sapling

text: Singapore:Ubin

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Lim

text: Tree

text: Singapore:CCNR-Seletar

text: Palaquium obovatum

text: SING 2022-922

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Lim

text: Singapore:CCNR-Seletar

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Phang, Neo & Lim

text: Sapling

text: Singapore:CCNR-Seletar

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Wilkie et al.

text: Sapling

text: Malaysia:Langkawi, Kedah

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Wilkie et al.

text: Tree

text: Malaysia:Kepong

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Royal Botanic Garden Edinburgh

text: live

text: Plant

text: Wilkie et al.

text: Malaysia:Kepong

text: Palaquium obovatum

text: leaf

text: Plant sample from Palaquium obovatum


text: Oklahoma Medical Research Foundation

text: live

text: Generic

text: RPE Cells

characteristic: cell type

text: missing

text: Positive

characteristic: fraction

text: Aldh1l1-cre/ERT2+; NuTRAP+

characteristic: genotype

text: missing

text: Mus musculus

text: RPE-choroid eyecups

text: RPE-choroid eyecups

text: NEBNext Ultra II Directional RNA Library Prep Kit for Illumina


text: Oklahoma Medical Research Foundation

text: live

text: Generic

text: RPE Cells

text: missing

text: Input

text: Aldh1l1-cre/ERT2+; NuTRAP+

text: missing

text: Mus musculus

characteristic: organism

text: RPE-choroid eyecups

text: RPE-choroid eyecups

characteristic: title


characteristic: External Id

text: Integrative Physiology, NNF Center for Basic Metabolic Research, Copenhagen University

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1, rep6


characteristic: INSDC first public

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, vehicle, rep6

text: vehicle


characteristic: INSDC last update

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1, rep5


characteristic: INSDC secondary accession

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, conjugate 2, rep5

text: conjugate 2


text: live

text: Generic

characteristic: NCBI submission model

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, conjugate 2, rep4

text: conjugate 2


text: live

text: Generic

characteristic: NCBI submission package

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, vehicle, rep5

text: vehicle


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, vehicle, rep4

text: vehicle


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1/MK-801, rep6


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, vehicle, rep3

text: vehicle


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1/MK-801, rep5


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, vehicle, rep2

text: vehicle


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1, rep4


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1, rep3


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1, rep2


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1, rep1


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, conjugate 2, rep3

text: conjugate 2


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, vehicle, rep1

text: vehicle


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1/MK-801, rep4


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, conjugate 2, rep2

text: conjugate 2


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, conjugate 2, rep1

text: conjugate 2


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1/MK-801, rep3


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1/MK-801, rep2


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Hypothalamus

text: Hypothalamus

text: Hypothalamus, GLP-1/MK-801, rep1


text: Chinese Academy of Agricultural Sciences

text: live

text: Model organism or animal

characteristic: age

text: China: Harbin

text: Sus scrofa

text: biological replicate 1

characteristic: replicate

text: not collected

characteristic: sex

characteristic: strain

text: primary porcine alveolar macrophages

text: Model organism or animal sample from Sus scrofa

text: MGF300-4L-deleted ASFV mutant infection 12h


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Model organism or animal

text: China: Harbin

text: Sus scrofa

text: biological replicate 2

text: not collected

text: primary porcine alveolar macrophages

characteristic: tissue

characteristic: treatment


text: live

text: Model organism or animal

characteristic: SRA accession

text: China: Harbin

text: Sus scrofa

text: biological replicate 3

text: not collected

text: primary porcine alveolar macrophages


text: live

text: Model organism or animal

text: China: Harbin

text: Sus scrofa

characteristic: organism

text: biological replicate 1

text: not collected

text: primary porcine alveolar macrophages

text: MGF300-4L-deleted ASFV mutant infection 20h


text: live

text: Model organism or animal

text: China: Harbin

text: Sus scrofa

text: biological replicate 2

text: not collected

text: primary porcine alveolar macrophages

characteristic: title


characteristic: External Id

text: live

text: Model organism or animal

text: China: Harbin

text: Sus scrofa

text: biological replicate 3

text: not collected

text: primary porcine alveolar macrophages


text: Northwest A&F University

characteristic: INSDC first public

text: live

text: Plant

text: Junzao

characteristic: cultivar

text: mature

text: Qingjian County

characteristic: ecotype

text: China:Shaanxi

text: Ziziphus jujuba

text: leaf

text: Plant sample from Ziziphus jujuba


text: Icahn School of Medicine at Mt Sinai

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: antibody

characteristic: cell line

text: missing

characteristic: genotype

text: missing

text: Homo sapiens

text: SKmel147 YL1sh84, H4ac ChIPseq

text: YL1 KD


text: Icahn School of Medicine at Mt Sinai

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: missing

text: missing

text: Homo sapiens

text: SKmel147 YL1sh30, H4ac ChIPseq

text: YL1 KD


text: Icahn School of Medicine at Mt Sinai

text: live

characteristic: INSDC status

text: Generic

text: missing

text: missing

text: Homo sapiens

text: SKmel147 shSCR2, H4ac ChIPseq

text: shSCR


text: Icahn School of Medicine at Mt Sinai

text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: SKmel147 shSCR, H4ac ChIPseq

text: shSCR

characteristic: treatment


text: Icahn School of Medicine at Mt Sinai

text: live

text: Generic

characteristic: SRA accession

text: missing

text: missing

text: Homo sapiens

text: SKmel147, ZNHIT1 ChIPseq

text: Parental line


text: Icahn School of Medicine at Mt Sinai

text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

characteristic: organism

text: SKmel147, YL1 ChIPseq

text: Parental line