characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: killed

text: NCBI

characteristic: cell line

text: fruit fly

text: Drosophila melanogaster

text: empty plasmid

characteristic: plasmid

text: Drosophila melanogaster

text: dsGFP control

characteristic: silencing

text: S2 cells

text: empty dsGFP biological replicate 1


status: KILLED

tag: attribute

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

characteristic: broker name

text: fruit fly

characteristic: common name

text: Drosophila melanogaster

characteristic: organism

text: empty plasmid

text: Drosophila melanogaster

text: dsGFP control

text: S2 cells

text: empty dsGFP biological replicate 2

characteristic: title


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant WT BRM plasmid

text: Drosophila melanogaster

text: dsGFP control

text: S2 cells

text: WT dsGFP biological replicate 1


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant WT BRM plasmid

text: Drosophila melanogaster

text: dsGFP control

text: S2 cells

text: WT dsGFP biological replicate 2


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: empty plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: empty dsBRM biological replicate 1


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: empty plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: empty dsBRM biological replicate 2


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant WT BRM plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: WT dsBRM biological replicate 1


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant WT BRM plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: WT dsBRM biological replicate 2


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant WT BRM plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: WT dsBRM_100 biological replicate 1


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant WT BRM plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: WT dsBRM_100 biological replicate 2


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant K804R BRM plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: K804R dsBRM_100 biological replicate 1


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Recombinant K804R BRM plasmid

text: Drosophila melanogaster

text: BRM knockdown

text: S2 cells

text: K804R dsBRM_100 biological replicate 2


text: killed

text: NCBI

text: Rabbit polyclonal against rat BRG1 (Östlund Farrants et al. Mol Cell Biol. 17, 895-905, 1997)

characteristic: chip antibody

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: S2 cells

text: Endogenous BRM IP replicate 1


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: S2 cells

text: Endogenous BRM IP replicate 2


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: S2 cells

text: Endogenous BRM Input replicate 1


text: killed

text: NCBI

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: S2 cells

text: Endogenous BRM Input replicate 2


text: killed

text: NCBI

text: house mouse

characteristic: developmental stage

text: wild type

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Embryonic Limb Bud

characteristic: strain

text: Hindlimb

characteristic: tissue


black Soil with fertilization H1.2

text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: killed

text: black Soil with fertilization H1.2

characteristic: Submitter Id

text: NCBI

text: 2soil sample bacteria

characteristic: description

text: China:Gongzhuling,Jilin Province

text: 2not applicable

characteristic: host

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 2 soil


black Soil with fertilization H2.2

text: Metagenome or environmental

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: black Soil with fertilization H2.2

text: NCBI

text: 4soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 4not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 4 soil


black Soil with fertilization H3.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H3.2

text: NCBI

characteristic: broker name

text: 6soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 6not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

characteristic: organism

text: soil metagenome

text: 6 soil

characteristic: title


black Soil with fertilization H22.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H22.2

text: NCBI

text: 8soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 8not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 8 soil


black Soil with fertilization H23.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H23.2

text: NCBI

text: 10soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 10not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 10 soil


black Soil with fertilization H24.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H24.2

text: NCBI

text: 12soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 12not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 12 soil


black Soil with fertilization H25.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H25.2

text: NCBI

text: 14soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 14not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 14 soil


black Soil with fertilization H26.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H26.2

text: NCBI

text: 16soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 16not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 16 soil


black Soil with fertilization H27.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H27.2

text: NCBI

text: 18soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 18not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 18 soil


black Soil with fertilization H28.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H28.2

text: NCBI

text: 20soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 20not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 20 soil


black Soil with fertilization H29.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H29.2

text: NCBI

text: 22soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 22not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 22 soil


black Soil with fertilization H30.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H30.2

text: NCBI

text: 24soil sample bacteria

text: China:Gongzhuling,Jilin Province

text: 24not applicable

text: 43.31069 N 124.48292 E

text: soil metagenome

text: soil metagenome

text: 24 soil


black Soil with fertilization H31.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H31.2

text: NCBI

text: 26soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 26not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 26 soil


black Soil with fertilization H32.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H32.2

text: NCBI

text: 28soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 28not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 28 soil


black Soil with fertilization H33.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H33.2

text: NCBI

text: 30soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 30not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 30 soil


black Soil with fertilization H52.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H52.2

text: NCBI

text: 32soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 32not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 32 soil


black Soil with fertilization H53.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H53.2

text: NCBI

text: 34soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 34not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 34 soil


black Soil with fertilization H54.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H54.2

text: NCBI

text: 36soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 36not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 36 soil


black Soil with fertilization H55.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H55.2

text: NCBI

text: 38soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 38not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 38 soil


black Soil with fertilization H56.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H56.2

text: NCBI

text: 40soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 40not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 40 soil


black Soil with fertilization H57.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H57.2

text: NCBI

text: 42soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 42not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 42 soil


black Soil with fertilization H58.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H58.2

text: NCBI

text: 44soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 44not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 44 soil


black Soil with fertilization H59.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H59.2

text: NCBI

text: 46soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 46not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 46 soil


black Soil with fertilization H60.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H60.2

text: NCBI

text: 48soil sample bacteria

text: China:Minzhuxiang,Heilongjiang Province

text: 48not applicable

text: 45.50536 N 126.51132 E

text: soil metagenome

text: soil metagenome

text: 48 soil


black Soil with fertilization H61.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H61.2

text: NCBI

text: 50soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 50not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 50 soil


black Soil with fertilization H62.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H62.2

text: NCBI

text: 52soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 52not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 52 soil


black Soil with fertilization H63.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H63.2

text: NCBI

text: 54soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 54not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 54 soil


black Soil with fertilization H64.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H64.2

text: NCBI

text: 56soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 56not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 56 soil


black Soil with fertilization H65.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H65.2

text: NCBI

text: 58soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 58not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 58 soil


black Soil with fertilization H66.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H66.2

text: NCBI

text: 60soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 60not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 60 soil


black Soil with fertilization H67.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H67.2

text: NCBI

text: 62soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 62not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 62 soil


black Soil with fertilization H68.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H68.2

text: NCBI

text: 64soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 64not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 64 soil


black Soil with fertilization H69.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H69.2

text: NCBI

text: 66soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 66not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 66 soil


black Soil with fertilization H70.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H70.2

text: NCBI

text: 68soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 68not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 68 soil


black Soil with fertilization H71.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H71.2

text: NCBI

text: 70soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 70not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 70 soil


black Soil with fertilization H72.2

text: Metagenome or environmental

text: killed

text: black Soil with fertilization H72.2

text: NCBI

text: 72soil sample bacteria

text: China:Heihe,Heilongjiang Province

text: 72not applicable

text: 50.15158 N 127.27071 E

text: soil metagenome

text: soil metagenome

text: 72 soil


Bacteria from soil

characteristic: Bacteria from soil treated by 0.04 mg/kg ciprofloxacin

characteristic: Bacteria from soil treated by 0.4 mg/kg ciprofloxacin

characteristic: Bacteria from soil treated by 4 mg/kg ciprofloxacin

characteristic: Bacteria from soil without any antibiotic treatment

text: Metagenome or environmental

text: pda|doubao

text: killed

text: Bacteria from soil

text: NCBI

text: China: Guangzhou

text: soil bacteria

text: soil

text: 23.16 N 113.35000000000002 E

text: soil metagenome

text: soil metagenome


Previtellogenic ovary_Control

text: Model organism or animal

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: killed

text: Previtellogenic ovary_Control

text: 3-4 years

characteristic: age

text: Shang-Chien Lee

text: NCBI

text: Shang-Chien Lee

text: Japanese eel

characteristic: common name

text: The Japanese eel (Anguilla japonica) has been considered one of the important marine reproductive migratory fish in East Asia. To understand the the block of initial ovarian development in pubertal female eels during early reproduction, we used Illumina sequencing technology (HiSeq2000) to sequence and compare the transcriptomic response of previtellogenic ovary in female Japanese eel after salmon pituitary homogenate (SPH) injections.

text: Adult stage

text: Lukang aquaculture farm, Taiwan

characteristic: ecotype

text: Anguilla japonica

text: Ovarian tissue, ovarian follicles

text: Anguilla japonica

text: female

characteristic: sex

text: Ovary

characteristic: tissue

text: Control

characteristic: treatment


text: Pathogen.env

characteristic: External Id

text: pda|bfssi.nicholas.petronella@gmail.com

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NCBI

text: Health Canada

text: Canada

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: serotype

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: killed

text: NCBI

characteristic: broker name

text: CD8 TILs

characteristic: cell type

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus CD8 TILs

characteristic: title


text: Human

characteristic: BioSampleModel

characteristic: ENA-LAST-UPDATE

text: killed

characteristic: age

text: Wulab,Key Laboratory of Genomics and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China

text: NCBI

text: human

characteristic: common name

characteristic: description

text: chronic HBV infection and liver cirrhosis

text: hepatocellular carcinoma

characteristic: disease

text: grade III

characteristic: isolate

text: Homo sapiens

text: tissue sample

text: Homo sapiens

text: male

characteristic: sex

text: liver


text: Human

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

text: human

text: normal

text: nontumor

text: ampliseq

text: Homo sapiens

text: tissue sample

text: Homo sapiens

text: male

text: liver

characteristic: tissue


text: Human

characteristic: ENA-FIRST-PUBLIC

text: killed

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: human

text: hepatocellular carcinoma

text: grade III

text: ampliseq

text: Homo sapiens

characteristic: organism

text: tissue sample

text: Homo sapiens

text: male

text: liver


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293057 is currently private and is scheduled to be released on Sep 01, 2017.

characteristic: title


text: killed

text: NCBI

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293056 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293055 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293054 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293053 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293062 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293061 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293060 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293059 is currently private and is scheduled to be released on Sep 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2293058 is currently private and is scheduled to be released on Sep 01, 2017.


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: ENA-LAST-UPDATE

text: killed

text: NCBI

text: China:Nanjing

text: rat

characteristic: host

text: cecal content

text: 32.03 N 118.46 E

text: rat gut metagenome

text: replicate = biological replicate 1

characteristic: replicate

text: rat gut metagenome


characteristic: External Id

text: killed

text: NCBI

text: HeLa cells

characteristic: cell line

text: overexpress N terminal Flag tagged YTHDF3 for 24 hr (0.75 ug plasmid/ml media)

characteristic: cell treatment

text: human

text: Homo sapiens

text: Anti-Flag beads IP

characteristic: sample treatment

text: Homo sapiens

text: HeLa


characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: NCBI

text: HeLa cells

text: N terminal Flag-HA tagged YTHDF3 HeLa stable expression cell line

text: human

text: Homo sapiens

text: Fed with 200 uM 4SU, 365 nm UV crosslinked, partial digested with Rnase T1, anti-Flag beads IP, SDS-PAGE gel size selection

text: Homo sapiens

text: HeLa


characteristic: ENA-FIRST-PUBLIC

text: killed

characteristic: SRA accession

text: NCBI

text: HeLa cells

text: 40 nM siRNA knockdown for 48 hr, then 100 ug/ml Cycloheximide (CHX) incubation

text: human

text: Homo sapiens

text: Isolated according to illumina Truseq Ribo Profile kit: total RNA (>200 nt) extraction, rRNA removal, and fragmentation

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep2-siYTHDF3-input


text: killed

text: NCBI

characteristic: broker name

text: HeLa cells

text: human

text: Homo sapiens

text: Isolated according to illumina Truseq Ribo Profile kit: Nuclease digestion, Microspin S-400 column separation, RNA extration, TBE gel size selection

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep2-siYTHDF3-RPF


text: killed

text: NCBI

text: HeLa cells

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep2-siControl-input


text: killed

text: NCBI

text: HeLa cells

text: human

text: Homo sapiens

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep2-siControl-RPF

characteristic: title


text: killed

text: NCBI

text: HeLa cells

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep1-siYTHDF3-input


text: killed

text: NCBI

text: HeLa cells

text: human

text: Homo sapiens

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep1-siYTHDF3-RPF


text: killed

text: NCBI

text: HeLa cells

text: human

text: Homo sapiens

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep1-siControl-input


text: killed

text: NCBI

text: HeLa cells

text: human

text: Homo sapiens

text: Homo sapiens

text: HeLa

text: Ribosome profiling-rep1-siControl-RPF


text: killed

text: NCBI

text: HeLa cells

text: human

text: Homo sapiens

text: Extracted with Trizol, and rRNA removal with ribominus kit

text: Homo sapiens

text: HeLa


text: killed

text: NCBI

text: HeLa cells

text: human

text: Homo sapiens

text: Extracted with Trizol, and poly-dT beads selection

text: Homo sapiens

text: HeLa


Control 1

text: Model organism or animal

characteristic: BioSampleModel

text: pda|calpan

characteristic: INSDC center name

text: killed

text: Control 1

characteristic: Submitter Id

text: 20 weeks

characteristic: age

text: NCBI

text: house mouse

text: Control

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: quadriceps

characteristic: tissue


Control 2

text: Model organism or animal

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|calpan

characteristic: INSDC first public

text: killed

text: Control 2

text: 20 weeks

text: NCBI

text: house mouse

text: Control

text: Mus musculus

characteristic: replicate

text: Mus musculus

text: female

text: quadriceps


Control 3

text: Model organism or animal

characteristic: ENA-FIRST-PUBLIC

text: pda|calpan

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: Control 3

text: 20 weeks

text: NCBI

text: house mouse

text: Control

text: Mus musculus

text: Mus musculus

text: female

text: quadriceps


KO 1

text: Model organism or animal

text: pda|calpan

text: killed

text: KO 1

text: 20 weeks

text: NCBI

characteristic: broker name

text: house mouse

characteristic: common name

text: Knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: female

text: quadriceps


KO 2

text: Model organism or animal

characteristic: BioSampleModel

text: pda|calpan

characteristic: INSDC center name

text: killed

text: KO 2

characteristic: Submitter Id

text: 20 weeks

text: NCBI

text: house mouse

text: Knockout

text: Mus musculus

text: Mus musculus

text: female

text: quadriceps


KO 3

text: Model organism or animal

text: pda|calpan

text: killed

text: KO 3

text: 20 weeks

characteristic: age

text: NCBI

text: house mouse

text: Knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: quadriceps


text: Invertebrate

characteristic: ENA-LAST-UPDATE

text: pda|celika

text: killed

text: not applicable

text: not applicable

characteristic: altitude

characteristic: background

text: not applicable

text: not applicable

characteristic: breed

text: NCBI

text: Feng He

text: baker's yeast

text: not applicable

characteristic: depth

text: YEPD growth at 25 C

characteristic: description

text: not applicable

text: not applicable

text: USA: Worcester, MA

text: not applicable

characteristic: host

text: not applicable

text: not applicable

text: not applicable

characteristic: isolate

text: not applicable

text: not applicable

text: Saccharomyces cerevisiae

text: replicate 1

text: Saccharomyces cerevisiae

text: not applicable

characteristic: strain

text: not applicable

characteristic: temp

text: not applicable

characteristic: tissue


text: Invertebrate

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: pda|celika

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: NCBI

characteristic: broker name

text: Feng He

text: baker's yeast

characteristic: common name

text: not applicable

text: YEPD growth at 25 C

text: not applicable

text: not applicable

text: USA: Worcester, MA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Saccharomyces cerevisiae

characteristic: organism

text: replicate 2

characteristic: replicate

text: Saccharomyces cerevisiae

text: not applicable

text: not applicable

text: not applicable


text: Invertebrate

characteristic: ENA-LAST-UPDATE

text: pda|celika

characteristic: INSDC center name

text: killed

characteristic: Submitter Id

text: not applicable

characteristic: age

text: not applicable

characteristic: altitude

characteristic: background

text: not applicable

text: not applicable

characteristic: breed

text: NCBI

text: Feng He

text: baker's yeast

text: not applicable

characteristic: depth

text: YEPD growth at 25 C

characteristic: description

text: not applicable

text: not applicable

text: USA: Worcester, MA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Saccharomyces cerevisiae

text: replicate 3

text: Saccharomyces cerevisiae

text: not applicable

text: not applicable

text: not applicable


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

text: killed

text: dA-Wutz

characteristic: binding sites

text: NCBI

characteristic: cell line

text: house mouse

text: male

characteristic: gender

text: Mus musculus

text: Mus musculus

text: mouse ES cells

text: dALBRCLIP

characteristic: title

text: doxycycline-induced

characteristic: treatment


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: dLBS

text: NCBI

characteristic: broker name

text: house mouse

characteristic: common name

text: male

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mouse ES cells

text: dLBSLBRCLIP

text: doxycycline-induced


text: Pathogen.cl

characteristic: BioSampleModel

characteristic: INSDC center name

text: killed

characteristic: Submitter Id

text: NCBI

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: strain

text: Listeria monocytogenes


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

text: killed

text: MO488, MO489 (anti-hDUX4)

characteristic: antibody

text: NCBI

text: house mouse

text: MMH codon-altered

characteristic: genotype/variation

text: Mus musculus

text: Mus musculus

text: cultured mouse myoblasts (C2C12)

text: NO DOXYCYCLINE


characteristic: ENA-LAST-UPDATE

text: killed

text: anti-GFP

characteristic: anitbody

text: NCBI

text: house mouse

text: MMH codon-altered

text: Mus musculus

text: Mus musculus

text: cultured mouse myoblasts (C2C12)

characteristic: title

text: DOXYCYCLINE

characteristic: treatment


characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: MO488 (anti-hDUX4)

text: NCBI

characteristic: broker name

text: house mouse

text: MMH codon-altered

text: Mus musculus

text: Mus musculus

text: cultured mouse myoblasts (C2C12)

text: DOXYCYCLINE


text: killed

text: MO488, MO489 (anti-hDUX4)

text: NCBI

text: house mouse

characteristic: common name

text: MMH codon-altered

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cultured mouse myoblasts (C2C12)

text: DOXYCYCLINE


text: killed

text: MO489 (anti-hDUX4)

text: NCBI

text: house mouse

text: MMH codon-altered

text: Mus musculus

text: Mus musculus

text: cultured mouse myoblasts (C2C12)

text: DOXYCYCLINE


biofilm from A and B granules

text: Metagenome or environmental

characteristic: BioSampleModel

text: pda|xuzhongshuo

characteristic: INSDC center name

text: killed

text: biofilm from A and B granules

characteristic: Submitter Id

text: NCBI

text: China:Shanghai

text: activated sludge

text: 31.27 N 121.52 E

text: biofilm metagenome

text: biofilm metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

characteristic: strain

text: Embryonic stem cell

characteristic: tissue

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT+ day8) 2


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: killed

text: Flag antibody (M2; Sigma)

characteristic: antibody

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT+ day4) 2


text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT-) 2

characteristic: title


characteristic: INSDC last update

text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC (mock transfectant; OHT-; Negative cont for FLAG-ChIP) 2


text: killed

characteristic: INSDC status

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT+ day8) 1


text: killed

characteristic: SRA accession

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT+ day4) 1


text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

characteristic: broker name

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT-) 1


text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC (mock transfectant; OHT-; Negative cont for FLAG-ChIP) 1


text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Wild-type ESC stably expressing FLAG-PCGF6


text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT+)


text: killed

text: Flag antibody (M2; Sigma)

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: Pcgf6 fl/fl ESC stably expressing FLAG-PCGF6 (OHT-)


US weedy rice

text: Plant

characteristic: BioSampleModel

text: killed

text: US weedy rice

text: 1 year

characteristic: age

text: NCBI

text: rice

text: weed

characteristic: ecotype

text: USA

text: Oryza sativa

text: Oryza sativa

text: leaf


text: Human

characteristic: ENA-FIRST-PUBLIC

text: pda|lgmgeo

characteristic: INSDC center name

text: killed

characteristic: Submitter Id

text: CARGO, 1 Place de l’hôpital, 67091 STRASBOURG Cedex - France

text: NCBI

text: human

characteristic: disease

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: blood sample

text: WES of human: PIK3R4, affected sibling (II.1)


text: Human

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|lgmgeo

characteristic: INSDC first public

text: killed

text: NCBI

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: blood sample

characteristic: tissue

text: WES of human: PIK3R4, affected sibling (II.3)


text: Human

text: pda|lgmgeo

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood sample

text: WES of human: PIK3R4, affected sibling (II.5)

characteristic: title


text: Human

characteristic: BioSampleModel

text: pda|lgmgeo

text: killed

text: NCBI

characteristic: broker name

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: female

text: blood sample

text: WES of human: PIK3R4, healthy sister (II.4)


hES

text: Human

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: killed

text: hES

text: not applicable

characteristic: age

text: Zhongshan Ophthalmic Centre, 54th Xianlie Road, Guangzhou, China

text: NCBI

text: H9 hES

text: human embryonic cell

text: human

text: We induced human embryonic cells to lens lentoid bodies by sequential treatment with noggin, BMP4/BMP7/FGF2, and Wnt3a/FGF2. This is from human embryonic cells as control(hES).

text: Homo sapiens

text: Homo sapiens

text: not applicable

text: not applicable


text: Pathogen.cl

text: killed

characteristic: Submitter Id

text: NCBI

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: strain

text: Listeria monocytogenes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: killed

text: NCBI

text: human

text: Homo sapiens

text: Homo sapiens

text: tumor


characteristic: INSDC first public

text: killed

text: NCBI

text: human

text: Homo sapiens

text: Homo sapiens

text: mesenchymal stem cell

characteristic: tissue


characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: NCBI

text: human

text: Homo sapiens

text: Homo sapiens

text: cell line


Mock H. pylori multistrain

text: Metagenome or environmental

text: pda|jbeaulaurier

text: killed

characteristic: SRA accession

text: Mock H. pylori multistrain

text: NCBI

text: Mixture of two strains of Helicobacter pylori: 26695 and J99.

characteristic: description

text: USA: New York, NY

text: Homo sapiens

text: Helicobacter pylori: 26695 and J99; Lab strains cultured, sequenced then mixed

text: 40.71636291238809 N 74.00914192199707 W

text: mixed culture

text: mixed culture

text: Helicobacter pylori: strains 26695 and J99


text: Invertebrate

characteristic: BioSampleModel

text: killed

text: NCBI

characteristic: broker name

text: cotton bollworm

text: China:beijing

text: not collected

text: control larvae

characteristic: isolate

text: Helicoverpa armigera

text: Helicoverpa armigera

text: whole body


text: Invertebrate

characteristic: ENA-FIRST-PUBLIC

text: killed

text: NCBI

text: cotton bollworm

characteristic: common name

text: China:beijing

text: not collected

text: Mm-infected larvae

text: Helicoverpa armigera

characteristic: organism

text: Helicoverpa armigera

text: whole body


text: Invertebrate

characteristic: INSDC center name

text: killed

characteristic: Submitter Id

text: NCBI

text: cotton bollworm

text: China:beijing

text: not collected

text: Mt-infected larvae

text: Helicoverpa armigera

text: Helicoverpa armigera

text: whole body


Camellia sinensis

text: Plant

text: killed

text: Camellia sinensis

text: NCBI

text: Six years old

text: China: Hangzhou

text: Lower catechins content

text: Camellia sinensis

text: Camellia sinensis

text: young shoots


Camellia sinensis_Higher

text: Plant

text: killed

text: Camellia sinensis_Higher

text: Six years old

characteristic: age

text: NCBI

text: China: Hangzhou

text: Higher catechins content

text: Camellia sinensis

text: Camellia sinensis

text: young shoots

text: High-catechins

characteristic: title


characteristic: External Id

text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2390008 is currently private and is scheduled to be released on Mar 14, 2018.


characteristic: INSDC first public

text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394208 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394207 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394204 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394206 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394205 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394200 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394199 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394198 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394197 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394196 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394195 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394194 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394193 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394192 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394191 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394201 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394203 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394202 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394228 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394227 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394226 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394225 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394224 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394223 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394222 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394221 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394220 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394219 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394218 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394217 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394216 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394215 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394214 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394213 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394212 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394211 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394210 is currently private and is scheduled to be released on Mar 01, 2017.


text: killed

text: NCBI

text: house mouse

text: Mus musculus

text: Mus musculus

text: GEO accession GSM2394209 is currently private and is scheduled to be released on Mar 01, 2017.


ZjSGR transgenic Arabidopsis

text: Plant

characteristic: ENA-LAST-UPDATE

text: pda|tengke

text: killed

text: ZjSGR transgenic Arabidopsis

text: 3 week

text: NCBI

text: Columbia

characteristic: ecotype

text: China

text: Arabidopsis

text: Arabidopsis

text: leaf

characteristic: tissue


ZjSGR overexpressing Arabidopsis

text: Plant

text: pda|tengke

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: ZjSGR overexpressing Arabidopsis

text: 3 week

text: NCBI

text: Columbia

text: China

text: Arabidopsis

text: Arabidopsis

text: leaf


text: Pathogen.cl

characteristic: BioSampleModel

text: EDLB-CDC

text: killed

text: NCBI

characteristic: broker name

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain

text: Salmonella enterica


characteristic: ENA-FIRST-PUBLIC

text: killed

text: NCBI

text: human

characteristic: common name

text: grown in MEMa

characteristic: growth

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Primary neuroblastoma cell line established at the Children's Cancer Research Institute

text: Neuroblastoma cell line STA-NB-6 (1)


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Collected during reconstructive surgery or amputations of male and female patients

text: Peripheral nerve associated primary fibroblasts 3

characteristic: title


characteristic: External Id

text: killed

text: NCBI

text: human

text: Samples were not cultivated

text: Homo sapiens

text: Homo sapiens

text: Tumor cells-depleted bone marrow-derived mono nuclear cells

text: Mononuclear cells 60d


characteristic: INSDC first public

text: killed

text: NCBI

text: human

text: Samples were not cultivated

text: Homo sapiens

text: Homo sapiens

text: Mononuclear cells 59d


characteristic: ENA-LAST-UPDATE

text: killed

text: NCBI

text: human

text: Samples were not cultivated

text: Homo sapiens

text: Homo sapiens

text: Mononuclear cells 01d


text: killed

text: NCBI

text: human

text: Samples were not cultivated

text: Homo sapiens

text: Homo sapiens

text: Mononuclear cells 33d


text: killed

text: NCBI

text: human

text: Samples were not cultivated

text: Homo sapiens

text: Homo sapiens

text: Mononuclear cells 02d


text: killed

text: NCBI

text: human

text: Samples were not cultivated

text: Homo sapiens

text: Homo sapiens

text: Mononuclear cells 08d


text: killed

text: NCBI

text: human

text: Samples were not cultivated

text: Homo sapiens

text: Homo sapiens

text: Mononuclear cells 05d


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Neuroblastoma cell line STA-NB-15


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Neuroblastoma cell line STA-NB-7


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Neuroblastoma cell line STA-NB-2


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Neuroblastoma cell line STA-NB-6 (3)


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve associated primary fibroblasts 1


text: killed

text: NCBI

text: human

text: grown on PLL/Laminin in SC media

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve associated primary Schwann cells 5


text: killed

text: NCBI

text: human

text: grown on PLL/Laminin in SC media

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve associated primary Schwann cells 4


text: killed

text: NCBI

text: human

text: grown on PLL/Laminin in SC media

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve associated primary Schwann cells 3


text: killed

text: NCBI

text: human

text: grown on PLL/Laminin in SC media

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve associated primary Schwann cells 2


text: killed

text: NCBI

text: human

text: grown on PLL/Laminin in SC media

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve associated primary Schwann cells 1


text: killed

text: NCBI

text: human

text: Samples were kept in MEMa medium for 8 days. Not grown.

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve fascicle injured 3


text: killed

text: NCBI

text: human

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve fascicle injured 2


text: killed

text: NCBI

text: human

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve fascicle injured 1


text: killed

text: NCBI

text: human

text: Samples were fresh frozen. Not grown.

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve fascicle CTRL 3


text: killed

text: NCBI

text: human

text: Samples were fresh frozen. Not grown.

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve fascicle CTRL 2


text: killed

text: NCBI

text: human

text: Samples were fresh frozen. Not grown.

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve fascicle CTRL 1


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Peripheral nerve associated primary fibroblasts 2


text: killed

text: NCBI

text: human

text: grown in MEMa

text: Homo sapiens

text: Homo sapiens

text: Neuroblastoma cell line STA-NB-6 (2)


text: Pathogen.cl

text: pda|lcctruong

characteristic: INSDC center name

text: killed

characteristic: Submitter Id

text: NCBI

text: Missing

text: Missing

text: Missing

text: Missing

characteristic: description

text: Missing

characteristic: genotype

text: USA

text: Missing

text: Missing

text: Missing

text: Missing

text: Missing

text: Missing

text: Missing

text: Missing

text: Missing

text: Missing

text: Missing

characteristic: isolate

text: Missing

text: Missing

text: Listeria monocytogenes

text: Missing

text: Missing

characteristic: pathotype

text: Listeria monocytogenes

text: Missing

characteristic: serotype

text: Missing

characteristic: serovar

text: Missing

text: Missing

characteristic: subgroup

text: Missing

characteristic: subtype

text: Missing


text: Plant

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

text: pda|hengyouzhang

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: seedling

characteristic: age

text: NCBI

characteristic: broker name

text: soybean

characteristic: common name

characteristic: cultivar

text: seedling

text: China:Henan

text: Glycine max

text: Glycine max

text: Leaves

characteristic: tissue


text: Plant

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|hengyouzhang

characteristic: INSDC center name

characteristic: INSDC first public

text: killed

characteristic: Submitter Id

text: seedling

text: NCBI

text: soybean

text: seedling

text: China:Henan

text: Glycine max

characteristic: organism

text: Glycine max

text: Roots


text: Pathogen.cl

text: pda|uphl

text: killed

text: NCBI

text: CDC

text: Missing

text: USA

text: Missing

characteristic: host

text: Missing

text: Missing

characteristic: isolate

text: Missing

text: Missing

text: Shigella sonnei

text: Shigella sonnei

characteristic: strain


text: Plant

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

text: pda|hlszlaszlo

characteristic: INSDC last update

text: killed

text: 10 days

text: NCBI

text: thale cress

text: Arabidopsis thaliana plant sample used to map RNA:DNA hybrids with DRIP-seq.

characteristic: description

text: seedling

characteristic: ecotype

text: WT

characteristic: genotype

text: United Kingdom: Norwich

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling


text: Plant

text: pda|hlszlaszlo

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: 10 days

characteristic: age

text: NCBI

characteristic: broker name

text: thale cress

characteristic: common name

text: Arabidopsis thaliana plant sample where NDX is tagged with FLAG-epitope on the N-terminal of the protein. This sample was used to map NDX positions with ChIP-seq.

text: seedling

text: not applicable

text: United Kingdom: Norwich

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole seedling


text: Pathogen.cl

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EDLB-CDC

characteristic: INSDC center name

characteristic: INSDC first public

text: killed

text: NCBI

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


text: killed

text: NCBI

text: HSC sorted from cord blood

characteristic: cell type

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: human umbilical cord blood HSC

text: umbilical cord blood

characteristic: tissue


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: killed

text: NCBI

text: mHSC sorted from bone marrow

text: house mouse

text: Mus musculus

text: Mus musculus

text: mouse HSC

characteristic: strain

text: bone marrow

text: mouse-HSC-A


text: killed

text: 8 wk old

text: NCBI

text: HSC

text: house mouse

text: Mus musculus

text: anti-cGAS (Santa cruz biotechnology (USA), sc-245858, lot: L3114)

characteristic: rip antibody

text: Mus musculus

text: mouse HSC


text: killed

characteristic: INSDC status

text: 8 wk old

text: NCBI

text: HSC

text: house mouse

text: Mus musculus

text: Goat IgG (Boster (Wuhan, China), AR0009, lot: 08K26C09)

text: Mus musculus

text: mouse HSC


text: killed

characteristic: SRA accession

text: NCBI

text: human

text: colorectal cancer

characteristic: disease state

text: Homo sapiens

text: Homo sapiens

text: colorectal cancer_plasma


text: killed

text: NCBI

characteristic: broker name

text: human

text: pancreatic cancer

text: Homo sapiens

text: Homo sapiens

text: pancreatic cancer_plasma


text: killed

text: NCBI

text: human

characteristic: common name

text: lung cancer

text: Homo sapiens

text: Homo sapiens

text: lung cancer_plasma


SPA-K

text: Model organism or animal

characteristic: BioSampleModel

characteristic: ENA-LAST-UPDATE

text: killed

text: SPA-K

characteristic: Submitter Id

text: NCBI

text: adult

text: K

characteristic: isolate

text: Solenodon paradoxus woodi

text: Solenodon paradoxus woodi

text: male

characteristic: sex

text: woodi

text: blood

text: Solenodon paradoxus woodi, sample K


characteristic: External Id

characteristic: INSDC first public

text: killed

text: NCBI

text: zebrafish

characteristic: developmental stage

text: zfpm1 mutant

characteristic: genotype

text: Danio rerio

text: Danio rerio

text: Heart

text: TU

text: heart

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: killed

text: NCBI

text: zebrafish

text: control

text: Danio rerio

characteristic: organism

text: Danio rerio

text: Heart

text: TU

characteristic: strain

text: heart

characteristic: tissue


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

characteristic: INSDC center name

text: killed

characteristic: INSDC status

text: Manual

text: Staggered A

characteristic: Mock

text: GoTaq polymerase

characteristic: Replicate

characteristic: SRA accession

text: NCBI

characteristic: broker name

text: not applicable

text: Fungal mock community; staggered A

characteristic: description

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

characteristic: BioSampleModel

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|mbakker

text: killed

text: Manual

text: Staggered B

text: GoTaq polymerase

characteristic: Submitter Id

text: NCBI

text: not applicable

text: Fungal mock community; staggered B

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

characteristic: INSDC first public

text: killed

text: Manual

text: Even

text: GoTaq polymerase

text: NCBI

text: not applicable

text: Fungal mock community; even

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: ENA-FIRST-PUBLIC

text: pda|mbakker

text: killed

text: Juno

text: Staggered A

text: NCBI

text: not applicable

text: Fungal mock community; staggered A

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

characteristic: INSDC last update

text: killed

text: Juno

text: Staggered B

text: NCBI

text: not applicable

text: Fungal mock community; staggered B

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

text: killed

text: Juno

text: Even

text: NCBI

text: not applicable

text: Fungal mock community; even

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

characteristic: organism

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

text: killed

text: Juno

text: Negative control; DNA extraction stage

text: A

text: NCBI

text: not applicable

text: Negative control; DNA extraction stage

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

text: killed

text: Juno

text: Negative control; DNA extraction stage

text: B

text: NCBI

text: not applicable

text: Negative control; DNA extraction stage

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

text: killed

text: Juno

text: Negative control; PCR stage

text: A

text: NCBI

text: not applicable

text: Negative control; PCR stage

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: pda|mbakker

text: killed

text: Juno

text: Negative control; PCR stage

text: B

text: NCBI

text: not applicable

text: Negative control; PCR stage

text: synthetic

text: synthetic

text: synthetic

text: not applicable

text: not applicable

text: fungus metagenome

text: fungus metagenome


text: killed

text: NCBI

text: Induced

characteristic: induced

text: Plasmodium falciparum NF54

text: Plasmodium falciparum NF54

text: Single cell sorted Plasmodium falciparum NF54 infected human erythrocytes

characteristic: time point

characteristic: title


text: killed

characteristic: INSDC status

text: NCBI

text: Uninduced

text: Plasmodium falciparum NF54

text: Plasmodium falciparum NF54


text: killed

text: NCBI

text: Plasmodium falciparum NF54

text: Plasmodium falciparum NF54


text: Human

characteristic: INSDC center name

text: killed

text: missing

characteristic: age

text: Dr. Jaffee

text: NCBI

text: human

characteristic: common name

text: missing

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: pancreas

characteristic: tissue


text: Human

characteristic: BioSampleModel

characteristic: ENA-LAST-UPDATE

text: killed

characteristic: SRA accession

text: Dr. Iacobuzio-Donahue

text: NCBI

characteristic: broker name

text: human

text: missing

text: Homo sapiens

text: Homo sapiens

text: male

text: pancreas


text: Human

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

text: killed

characteristic: Submitter Id

text: missing

text: Dr. Iacobuzio-Donahue

text: NCBI

text: human

text: missing

text: Homo sapiens

text: Homo sapiens

text: missing

text: pancreas


text: Human

characteristic: INSDC last update

text: killed

text: Chen WH et al.

text: NCBI

text: human

text: missing

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: female

text: pancreas


text: Human

text: killed

characteristic: INSDC status

text: Loor et al.

text: NCBI

text: human

text: missing

text: Homo sapiens

text: Homo sapiens

text: female

text: pancreas


HPDE

text: Human

characteristic: INSDC center name

text: killed

text: HPDE

text: missing

text: Dr. Ming-Sound Tsao

text: NCBI

text: human

text: missing

text: Homo sapiens

text: HPDE

text: Homo sapiens

text: missing

text: pancreas


HPNE

text: Human

text: killed

text: HPNE

characteristic: age

text: Lee KM. Et al.

text: NCBI

text: human

text: missing

text: Homo sapiens

text: HPNE

text: Homo sapiens

text: male

text: pancreas


JRN

text: Human

text: killed

text: JRN

text: Dr. Iacobuzio-Donahue

text: NCBI

text: human

characteristic: common name

text: missing

text: Homo sapiens

text: JRN

text: Homo sapiens

text: male

text: pancreas


text: Plant

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

characteristic: cultivar

text: WT-Light, replicate 1, forward reads

characteristic: description

text: vegetative stage

text: WT-Light, replicate 1, forward reads

characteristic: genotype

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: full light

characteristic: treatment


text: Plant

characteristic: BioSampleModel

characteristic: ENA-LAST-UPDATE

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

text: WT-Light, replicate 2, forward reads

text: vegetative stage

text: WT-Light, replicate 2, forward reads

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

characteristic: tissue

text: full light


text: Plant

characteristic: ENA-FIRST-PUBLIC

text: pda|hamptonyili

text: killed

characteristic: SRA accession

text: NCBI

characteristic: broker name

text: Fiesta 4

text: WT-Light, replicate 3, forward reads

text: vegetative stage

text: WT-Light, replicate 3, forward reads

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: full light


text: Plant

characteristic: External Id

text: pda|hamptonyili

characteristic: INSDC first public

text: killed

characteristic: Submitter Id

text: NCBI

text: Fiesta 4

text: shadow-1-Light, replicate 1, forward reads

text: vegetative stage

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: full light


text: Plant

text: pda|hamptonyili

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: NCBI

text: Fiesta 4

text: shadow-1-Light, replicate 2, forward reads

text: vegetative stage

text: missing

text: Lolium perenne

characteristic: organism

text: Lolium perenne

text: leaf

text: full light


text: Plant

text: pda|hamptonyili

characteristic: INSDC center name

text: killed

text: NCBI

text: Fiesta 4

text: shadow-1-Light, replicate 3, reverse reads

text: vegetative stage

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: full light


text: Plant

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

characteristic: cultivar

text: WT-shade, replicate 1, forward reads

text: vegetative stage

text: WT-shade, replicate 1, forward reads

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: shade


text: Plant

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

text: WT-shade, replicate 2, reverse reads

characteristic: description

text: vegetative stage

text: WT-shade, replicate 2, reverse reads

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: shade


text: Plant

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

text: WT-shade, replicate 3, forward reads

text: vegetative stage

text: WT-shade, replicate 3, forward reads

characteristic: genotype

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: shade


text: Plant

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

text: shadow-1-shade replicate 1, forward reads

text: vegetative stage

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: shade

characteristic: treatment


text: Plant

characteristic: BioSampleModel

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

text: shadow-1-shade replicate 2, forward reads

text: vegetative stage

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: shade


text: Plant

characteristic: ENA-LAST-UPDATE

text: pda|hamptonyili

text: killed

text: NCBI

text: Fiesta 4

text: shadow-1-shade replicate 3, forward reads

text: vegetative stage

text: missing

text: Lolium perenne

text: Lolium perenne

text: leaf

text: shade